Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391190 | XP_024628855.1 | 47.078 | 308 | 101 | 6 | 1 | 252 | 17 | 318 | 8.59e-70 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391190 | sp|Q6Z2G9|TLP5_ORYSJ | 44.167 | 120 | 65 | 2 | 134 | 252 | 298 | 416 | 3.17e-17 | 83.6 |
| Msa0391190 | sp|Q6Z2G9|TLP5_ORYSJ | 34.286 | 105 | 48 | 2 | 33 | 127 | 66 | 159 | 4.39e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391190 | A0A396GTK9 | 67.424 | 132 | 36 | 1 | 128 | 252 | 187 | 318 | 1.26e-49 | 175 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0391190 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391190 | MtrunA17_Chr8g0373341 | 67.424 | 132 | 36 | 1 | 128 | 252 | 187 | 318 | 2.43e-53 | 175 |
| Msa0391190 | MtrunA17_Chr8g0373331 | 51.370 | 146 | 53 | 4 | 5 | 138 | 23 | 162 | 3.15e-33 | 123 |
| Msa0391190 | MtrunA17_Chr8g0373331 | 48.760 | 121 | 46 | 4 | 137 | 252 | 234 | 343 | 1.44e-21 | 92.0 |
| Msa0391190 | MtrunA17_Chr8g0373001 | 52.800 | 125 | 51 | 2 | 135 | 252 | 277 | 400 | 9.25e-30 | 115 |
| Msa0391190 | MtrunA17_Chr8g0373001 | 50.769 | 130 | 54 | 3 | 1 | 126 | 20 | 143 | 1.18e-29 | 115 |
| Msa0391190 | MtrunA17_Chr8g0373361 | 53.175 | 126 | 43 | 4 | 8 | 126 | 32 | 148 | 4.83e-27 | 107 |
| Msa0391190 | MtrunA17_Chr8g0373361 | 42.188 | 128 | 58 | 4 | 135 | 252 | 279 | 400 | 6.20e-16 | 76.6 |
| Msa0391190 | MtrunA17_Chr5g0404321 | 46.400 | 125 | 57 | 3 | 137 | 252 | 281 | 404 | 4.37e-22 | 94.4 |
| Msa0391190 | MtrunA17_Chr5g0404321 | 42.748 | 131 | 63 | 4 | 2 | 126 | 21 | 145 | 4.90e-19 | 85.5 |
| Msa0391190 | MtrunA17_Chr1g0155301 | 54.762 | 84 | 37 | 1 | 169 | 252 | 328 | 410 | 3.92e-19 | 85.9 |
| Msa0391190 | MtrunA17_Chr1g0196071 | 42.149 | 121 | 58 | 4 | 134 | 252 | 280 | 390 | 4.48e-16 | 77.0 |
| Msa0391190 | MtrunA17_Chr2g0315641 | 46.809 | 94 | 49 | 1 | 159 | 252 | 267 | 359 | 4.71e-16 | 76.6 |
| Msa0391190 | MtrunA17_Chr2g0278511 | 44.565 | 92 | 46 | 2 | 166 | 252 | 324 | 415 | 3.80e-14 | 71.2 |
| Msa0391190 | MtrunA17_Chr8g0373351 | 42.373 | 118 | 48 | 3 | 135 | 252 | 185 | 282 | 3.85e-14 | 70.5 |
| Msa0391190 | MtrunA17_Chr2g0286441 | 47.561 | 82 | 40 | 2 | 171 | 252 | 303 | 381 | 8.00e-14 | 70.5 |
| Msa0391190 | MtrunA17_Chr1g0201891 | 41.000 | 100 | 46 | 2 | 165 | 252 | 321 | 419 | 6.55e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391190 | AT1G47270.3 | 42.593 | 108 | 55 | 3 | 151 | 252 | 270 | 376 | 4.50e-16 | 77.4 |
| Msa0391190 | AT1G47270.2 | 42.593 | 108 | 55 | 3 | 151 | 252 | 294 | 400 | 6.00e-16 | 77.0 |
| Msa0391190 | AT1G47270.1 | 42.593 | 108 | 55 | 3 | 151 | 252 | 295 | 401 | 6.02e-16 | 77.0 |
| Msa0391190 | AT2G18280.2 | 50.000 | 82 | 40 | 1 | 171 | 252 | 301 | 381 | 6.34e-16 | 77.0 |
| Msa0391190 | AT2G18280.2 | 36.585 | 123 | 67 | 3 | 18 | 134 | 29 | 146 | 2.05e-11 | 63.5 |
| Msa0391190 | AT2G18280.1 | 50.000 | 82 | 40 | 1 | 171 | 252 | 301 | 381 | 6.34e-16 | 77.0 |
| Msa0391190 | AT2G18280.1 | 36.585 | 123 | 67 | 3 | 18 | 134 | 29 | 146 | 2.05e-11 | 63.5 |
| Msa0391190 | AT1G53320.1 | 53.086 | 81 | 37 | 1 | 172 | 252 | 288 | 367 | 8.70e-16 | 76.3 |
| Msa0391190 | AT3G06380.2 | 50.000 | 82 | 37 | 3 | 171 | 252 | 199 | 276 | 3.86e-15 | 73.6 |
| Msa0391190 | AT3G06380.1 | 50.000 | 82 | 37 | 3 | 171 | 252 | 291 | 368 | 9.33e-15 | 73.6 |
| Msa0391190 | AT2G47900.2 | 48.780 | 82 | 39 | 2 | 171 | 252 | 316 | 394 | 2.12e-13 | 69.7 |
| Msa0391190 | AT2G47900.1 | 48.780 | 82 | 39 | 2 | 171 | 252 | 316 | 394 | 2.12e-13 | 69.7 |
| Msa0391190 | AT2G47900.3 | 48.780 | 82 | 39 | 2 | 171 | 252 | 317 | 395 | 2.16e-13 | 69.7 |
| Msa0391190 | AT5G18680.2 | 47.674 | 86 | 40 | 3 | 171 | 252 | 201 | 285 | 2.19e-13 | 68.9 |
| Msa0391190 | AT5G18680.1 | 47.674 | 86 | 40 | 3 | 171 | 252 | 293 | 377 | 4.59e-13 | 68.6 |
| Msa0391190 | AT1G25280.3 | 44.086 | 93 | 40 | 2 | 171 | 252 | 164 | 255 | 1.42e-12 | 66.2 |
| Msa0391190 | AT1G25280.2 | 44.086 | 93 | 40 | 2 | 171 | 252 | 164 | 255 | 1.42e-12 | 66.2 |
| Msa0391190 | AT1G25280.1 | 44.086 | 93 | 40 | 2 | 171 | 252 | 342 | 433 | 3.33e-12 | 66.2 |
| Msa0391190 | AT1G76900.2 | 40.206 | 97 | 43 | 2 | 171 | 252 | 347 | 443 | 3.11e-11 | 63.2 |
| Msa0391190 | AT1G76900.1 | 40.206 | 97 | 43 | 2 | 171 | 252 | 347 | 443 | 3.11e-11 | 63.2 |
| Msa0391190 | AT1G76900.3 | 40.206 | 97 | 43 | 2 | 171 | 252 | 347 | 443 | 3.11e-11 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAAATTTGACCCGAAAA+TGG | 0.210727 | 3_2:-2700876 | None:intergenic |
| TTTCTCGTGCAGATCGAAAA+TGG | 0.275180 | 3_2:+2701402 | Msa0391190:CDS |
| ATTCCTGCTGTACTTAGATT+TGG | 0.307608 | 3_2:+2701004 | Msa0391190:CDS |
| CCCTGTTGAATAGGTTCAAT+TGG | 0.340120 | 3_2:-2700651 | None:intergenic |
| AATTATGTCTAAAAGCAATT+CGG | 0.348399 | 3_2:-2700694 | None:intergenic |
| TCCAATTGAACCTATTCAAC+AGG | 0.350379 | 3_2:+2700650 | Msa0391190:CDS |
| TCAGTCCGTGTAGCCTTGAT+AGG | 0.367629 | 3_2:-2701226 | None:intergenic |
| GCCCATTGTCCCTGTTGAAT+AGG | 0.377292 | 3_2:-2700660 | None:intergenic |
| GTCAAAGTCACACATTGTTC+TGG | 0.388147 | 3_2:+2700620 | Msa0391190:CDS |
| ATTATGTCTAAAAGCAATTC+GGG | 0.401390 | 3_2:-2700693 | None:intergenic |
| GGCCACTCTCGCAGTTACTA+AGG | 0.411085 | 3_2:+2701423 | Msa0391190:CDS |
| GCATTGTATCGGATGATTAG+AGG | 0.423818 | 3_2:-2700952 | None:intergenic |
| GTGTTTCGGTATGTAAATCA+TGG | 0.434036 | 3_2:+2700762 | Msa0391190:CDS |
| ATAAAATTTGACCCGAAAAT+GGG | 0.441456 | 3_2:-2700875 | None:intergenic |
| CATACTTTGCAAGCCTATCA+AGG | 0.445138 | 3_2:+2701213 | Msa0391190:intron |
| TTAACACGCCCCATGACATC+AGG | 0.446343 | 3_2:-2701323 | None:intergenic |
| ACCTATTCAACAGGGACAAT+GGG | 0.456062 | 3_2:+2700659 | Msa0391190:CDS |
| TTCTCCGTCACCTGCACTGA+AGG | 0.456657 | 3_2:+2701169 | Msa0391190:CDS |
| ATTCGAAGGGTGAGACATCT+TGG | 0.459333 | 3_2:+2700714 | Msa0391190:CDS |
| TAAAGGTATCGATCTGGCCT+TGG | 0.459438 | 3_2:-2701250 | None:intergenic |
| TTAGTATAAAGGTATCGATC+TGG | 0.471050 | 3_2:-2701256 | None:intergenic |
| TGGTTGGTGCCCTGATGTCA+TGG | 0.480715 | 3_2:+2701313 | Msa0391190:CDS |
| GAACAATGTGTGACTTTGAC+GGG | 0.488703 | 3_2:-2700617 | None:intergenic |
| AAGACAACAACAGCACGCAC+AGG | 0.491476 | 3_2:-2700737 | None:intergenic |
| ATCCTTCCACATTGCTGAGT+TGG | 0.504963 | 3_2:-2700812 | None:intergenic |
| ATCGGATGATTAGAGGGAAC+GGG | 0.510147 | 3_2:-2700945 | None:intergenic |
| GGTTGGTGCCCTGATGTCAT+GGG | 0.515230 | 3_2:+2701314 | Msa0391190:CDS |
| GCACCAAATCTAAGTACAGC+AGG | 0.526115 | 3_2:-2701007 | None:intergenic |
| ATCGATAAACAATGGCTACA+AGG | 0.537056 | 3_2:-2701370 | None:intergenic |
| CATTGTATCGGATGATTAGA+GGG | 0.537608 | 3_2:-2700951 | None:intergenic |
| AGAACAATGTGTGACTTTGA+CGG | 0.539455 | 3_2:-2700618 | None:intergenic |
| AACCTATTCAACAGGGACAA+TGG | 0.542913 | 3_2:+2700658 | Msa0391190:CDS |
| TCAGATGGCAAAGGCTAGGA+AGG | 0.547032 | 3_2:-2701495 | None:intergenic |
| TACATTTGACATCAATCAGA+TGG | 0.548858 | 3_2:-2701510 | None:intergenic |
| CTTCTGATATAGCATTGTAT+CGG | 0.555814 | 3_2:-2700963 | None:intergenic |
| CTCTCGCAGTTACTAAGGGC+TGG | 0.568361 | 3_2:+2701428 | Msa0391190:CDS |
| GCCCTTAGTAACTGCGAGAG+TGG | 0.571691 | 3_2:-2701425 | None:intergenic |
| GCCACTCTCGCAGTTACTAA+GGG | 0.572984 | 3_2:+2701424 | Msa0391190:CDS |
| TCTCCGTCACCTGCACTGAA+GGG | 0.575411 | 3_2:+2701170 | Msa0391190:CDS |
| TATCGGATGATTAGAGGGAA+CGG | 0.576893 | 3_2:-2700946 | None:intergenic |
| TTTCCCTTCAGTGCAGGTGA+CGG | 0.582726 | 3_2:-2701173 | None:intergenic |
| TCAATCAGATGGCAAAGGCT+AGG | 0.587267 | 3_2:-2701499 | None:intergenic |
| AAGGCTAGGAAGGCAGAGAG+TGG | 0.603013 | 3_2:-2701485 | None:intergenic |
| AAACAATGGCTACAAGGTCA+AGG | 0.605692 | 3_2:-2701364 | None:intergenic |
| CGATACAATGCTATATCAGA+AGG | 0.607137 | 3_2:+2700964 | Msa0391190:CDS |
| GGAGTGCTGAGAGCAAGCAT+TGG | 0.616653 | 3_2:+2700586 | Msa0391190:CDS |
| AAAGTTTCATCAAATACTGG+AGG | 0.619871 | 3_2:-2701146 | None:intergenic |
| ATTACAAGATCGATAAACAA+TGG | 0.620701 | 3_2:-2701378 | None:intergenic |
| ACTGTCGTATATAGTGAACT+TGG | 0.628879 | 3_2:-2701120 | None:intergenic |
| GAGTGGATAAGTGTAGTCCA+TGG | 0.637239 | 3_2:-2701468 | None:intergenic |
| GCAAGCCTATCAAGGCTACA+CGG | 0.639910 | 3_2:+2701221 | Msa0391190:intron |
| AGGCTACACGGACTGAGCCA+AGG | 0.643171 | 3_2:+2701233 | Msa0391190:CDS |
| TGACATCAATCAGATGGCAA+AGG | 0.647282 | 3_2:-2701504 | None:intergenic |
| TAACACGCCCCATGACATCA+GGG | 0.652203 | 3_2:-2701322 | None:intergenic |
| CCAATTGAACCTATTCAACA+GGG | 0.658968 | 3_2:+2700651 | Msa0391190:CDS |
| GGTATGTAAATCATGGAGGT+CGG | 0.660173 | 3_2:+2700769 | Msa0391190:CDS |
| GGGATGAACAGCACAATGGT+TGG | 0.661556 | 3_2:+2701297 | Msa0391190:CDS |
| TAGAAAAGATGTATTCACCA+TGG | 0.664951 | 3_2:+2701451 | Msa0391190:CDS |
| CGATGGGATGAACAGCACAA+TGG | 0.666246 | 3_2:+2701293 | Msa0391190:CDS |
| ATGTCTAAAAGCAATTCGGG+TGG | 0.680227 | 3_2:-2700690 | None:intergenic |
| GTTGGTGCCCTGATGTCATG+GGG | 0.688750 | 3_2:+2701315 | Msa0391190:CDS |
| TTTCGGTATGTAAATCATGG+AGG | 0.730348 | 3_2:+2700765 | Msa0391190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATGTCTAAAAGCAATT+CGG | - | chr3_2:2700697-2700716 | None:intergenic | 20.0% |
| !! | TTGATATTTATACATATGAC+AGG | + | chr3_2:2701081-2701100 | Msa0391190:intron | 20.0% |
| !! | TACCTTTATACTAAAAAACA+AGG | + | chr3_2:2701265-2701284 | Msa0391190:CDS | 20.0% |
| !! | AATTATGTCTAAAAGCAATT+CGG | - | chr3_2:2700697-2700716 | None:intergenic | 20.0% |
| !! | TTGATATTTATACATATGAC+AGG | + | chr3_2:2701081-2701100 | Msa0391190:intron | 20.0% |
| !! | TACCTTTATACTAAAAAACA+AGG | + | chr3_2:2701265-2701284 | Msa0391190:CDS | 20.0% |
| ! | ATTATGTCTAAAAGCAATTC+GGG | - | chr3_2:2700696-2700715 | None:intergenic | 25.0% |
| ! | ATAAAATTTGACCCGAAAAT+GGG | - | chr3_2:2700878-2700897 | None:intergenic | 25.0% |
| ! | AATAAAATTTGACCCGAAAA+TGG | - | chr3_2:2700879-2700898 | None:intergenic | 25.0% |
| ! | GAAAAAGTTTCATCAAATAC+TGG | - | chr3_2:2701152-2701171 | None:intergenic | 25.0% |
| !!! | AGCCTTGTTTTTTAGTATAA+AGG | - | chr3_2:2701270-2701289 | None:intergenic | 25.0% |
| ! | ATTACAAGATCGATAAACAA+TGG | - | chr3_2:2701381-2701400 | None:intergenic | 25.0% |
| ! | ATTATGTCTAAAAGCAATTC+GGG | - | chr3_2:2700696-2700715 | None:intergenic | 25.0% |
| ! | ATAAAATTTGACCCGAAAAT+GGG | - | chr3_2:2700878-2700897 | None:intergenic | 25.0% |
| ! | AATAAAATTTGACCCGAAAA+TGG | - | chr3_2:2700879-2700898 | None:intergenic | 25.0% |
| ! | GAAAAAGTTTCATCAAATAC+TGG | - | chr3_2:2701152-2701171 | None:intergenic | 25.0% |
| !!! | AGCCTTGTTTTTTAGTATAA+AGG | - | chr3_2:2701270-2701289 | None:intergenic | 25.0% |
| ! | ATTACAAGATCGATAAACAA+TGG | - | chr3_2:2701381-2701400 | None:intergenic | 25.0% |
| ! | TGCTTTTAGACATAATTCGA+AGG | + | chr3_2:2700700-2700719 | Msa0391190:CDS | 30.0% |
| ! | GCTTTTAGACATAATTCGAA+GGG | + | chr3_2:2700701-2700720 | Msa0391190:CDS | 30.0% |
| ! | TGTTGTTGTCTTTTGTGTTT+CGG | + | chr3_2:2700748-2700767 | Msa0391190:CDS | 30.0% |
| ! | ATACATTCTTCACCCATTTT+CGG | + | chr3_2:2700863-2700882 | Msa0391190:CDS | 30.0% |
| !!! | GTCAAATTTTATTTTCCCTC+AGG | + | chr3_2:2700886-2700905 | Msa0391190:CDS | 30.0% |
| AGACAACATAAAAAACCTGA+GGG | - | chr3_2:2700904-2700923 | None:intergenic | 30.0% | |
| AAGACAACATAAAAAACCTG+AGG | - | chr3_2:2700905-2700924 | None:intergenic | 30.0% | |
| GGGCTATTTATACACATAAA+GGG | - | chr3_2:2700928-2700947 | None:intergenic | 30.0% | |
| CTTCTGATATAGCATTGTAT+CGG | - | chr3_2:2700966-2700985 | None:intergenic | 30.0% | |
| ! | TCAAGTTGTGAAGCTTATAA+GGG | - | chr3_2:2701065-2701084 | None:intergenic | 30.0% |
| ! | ATCAAGTTGTGAAGCTTATA+AGG | - | chr3_2:2701066-2701085 | None:intergenic | 30.0% |
| AAAGTTTCATCAAATACTGG+AGG | - | chr3_2:2701149-2701168 | None:intergenic | 30.0% | |
| GCAAAGTATGAATCTTACAT+TGG | - | chr3_2:2701203-2701222 | None:intergenic | 30.0% | |
| !! | TTAGTATAAAGGTATCGATC+TGG | - | chr3_2:2701259-2701278 | None:intergenic | 30.0% |
| TAGAAAAGATGTATTCACCA+TGG | + | chr3_2:2701451-2701470 | Msa0391190:CDS | 30.0% | |
| ! | TGCTTTTAGACATAATTCGA+AGG | + | chr3_2:2700700-2700719 | Msa0391190:CDS | 30.0% |
| ! | GCTTTTAGACATAATTCGAA+GGG | + | chr3_2:2700701-2700720 | Msa0391190:CDS | 30.0% |
| ! | TGTTGTTGTCTTTTGTGTTT+CGG | + | chr3_2:2700748-2700767 | Msa0391190:CDS | 30.0% |
| ! | ATACATTCTTCACCCATTTT+CGG | + | chr3_2:2700863-2700882 | Msa0391190:CDS | 30.0% |
| !!! | GTCAAATTTTATTTTCCCTC+AGG | + | chr3_2:2700886-2700905 | Msa0391190:CDS | 30.0% |
| AGACAACATAAAAAACCTGA+GGG | - | chr3_2:2700904-2700923 | None:intergenic | 30.0% | |
| AAGACAACATAAAAAACCTG+AGG | - | chr3_2:2700905-2700924 | None:intergenic | 30.0% | |
| GGGCTATTTATACACATAAA+GGG | - | chr3_2:2700928-2700947 | None:intergenic | 30.0% | |
| CTTCTGATATAGCATTGTAT+CGG | - | chr3_2:2700966-2700985 | None:intergenic | 30.0% | |
| ! | TCAAGTTGTGAAGCTTATAA+GGG | - | chr3_2:2701065-2701084 | None:intergenic | 30.0% |
| ! | ATCAAGTTGTGAAGCTTATA+AGG | - | chr3_2:2701066-2701085 | None:intergenic | 30.0% |
| AAAGTTTCATCAAATACTGG+AGG | - | chr3_2:2701149-2701168 | None:intergenic | 30.0% | |
| GCAAAGTATGAATCTTACAT+TGG | - | chr3_2:2701203-2701222 | None:intergenic | 30.0% | |
| !! | TTAGTATAAAGGTATCGATC+TGG | - | chr3_2:2701259-2701278 | None:intergenic | 30.0% |
| TAGAAAAGATGTATTCACCA+TGG | + | chr3_2:2701451-2701470 | Msa0391190:CDS | 30.0% | |
| AGAACAATGTGTGACTTTGA+CGG | - | chr3_2:2700621-2700640 | None:intergenic | 35.0% | |
| TCCAATTGAACCTATTCAAC+AGG | + | chr3_2:2700650-2700669 | Msa0391190:CDS | 35.0% | |
| CCAATTGAACCTATTCAACA+GGG | + | chr3_2:2700651-2700670 | Msa0391190:CDS | 35.0% | |
| GTGTTTCGGTATGTAAATCA+TGG | + | chr3_2:2700762-2700781 | Msa0391190:CDS | 35.0% | |
| TTTCGGTATGTAAATCATGG+AGG | + | chr3_2:2700765-2700784 | Msa0391190:CDS | 35.0% | |
| ATTTCCTATTTCACTGATGC+AGG | + | chr3_2:2700838-2700857 | Msa0391190:intron | 35.0% | |
| ATTACCTGCATCAGTGAAAT+AGG | - | chr3_2:2700845-2700864 | None:intergenic | 35.0% | |
| ! | TACATTCTTCACCCATTTTC+GGG | + | chr3_2:2700864-2700883 | Msa0391190:CDS | 35.0% |
| CGGGCTATTTATACACATAA+AGG | - | chr3_2:2700929-2700948 | None:intergenic | 35.0% | |
| CATTGTATCGGATGATTAGA+GGG | - | chr3_2:2700954-2700973 | None:intergenic | 35.0% | |
| CGATACAATGCTATATCAGA+AGG | + | chr3_2:2700964-2700983 | Msa0391190:CDS | 35.0% | |
| ATTCCTGCTGTACTTAGATT+TGG | + | chr3_2:2701004-2701023 | Msa0391190:CDS | 35.0% | |
| ACTGTCGTATATAGTGAACT+TGG | - | chr3_2:2701123-2701142 | None:intergenic | 35.0% | |
| TAAAAAACAAGGCTCTTCGA+TGG | + | chr3_2:2701276-2701295 | Msa0391190:CDS | 35.0% | |
| AAAAAACAAGGCTCTTCGAT+GGG | + | chr3_2:2701277-2701296 | Msa0391190:CDS | 35.0% | |
| ATCGATAAACAATGGCTACA+AGG | - | chr3_2:2701373-2701392 | None:intergenic | 35.0% | |
| AGAACAATGTGTGACTTTGA+CGG | - | chr3_2:2700621-2700640 | None:intergenic | 35.0% | |
| TCCAATTGAACCTATTCAAC+AGG | + | chr3_2:2700650-2700669 | Msa0391190:CDS | 35.0% | |
| CCAATTGAACCTATTCAACA+GGG | + | chr3_2:2700651-2700670 | Msa0391190:CDS | 35.0% | |
| GTGTTTCGGTATGTAAATCA+TGG | + | chr3_2:2700762-2700781 | Msa0391190:CDS | 35.0% | |
| TTTCGGTATGTAAATCATGG+AGG | + | chr3_2:2700765-2700784 | Msa0391190:CDS | 35.0% | |
| ATTTCCTATTTCACTGATGC+AGG | + | chr3_2:2700838-2700857 | Msa0391190:intron | 35.0% | |
| ATTACCTGCATCAGTGAAAT+AGG | - | chr3_2:2700845-2700864 | None:intergenic | 35.0% | |
| ! | TACATTCTTCACCCATTTTC+GGG | + | chr3_2:2700864-2700883 | Msa0391190:CDS | 35.0% |
| CGGGCTATTTATACACATAA+AGG | - | chr3_2:2700929-2700948 | None:intergenic | 35.0% | |
| CATTGTATCGGATGATTAGA+GGG | - | chr3_2:2700954-2700973 | None:intergenic | 35.0% | |
| CGATACAATGCTATATCAGA+AGG | + | chr3_2:2700964-2700983 | Msa0391190:CDS | 35.0% | |
| ATTCCTGCTGTACTTAGATT+TGG | + | chr3_2:2701004-2701023 | Msa0391190:CDS | 35.0% | |
| ACTGTCGTATATAGTGAACT+TGG | - | chr3_2:2701123-2701142 | None:intergenic | 35.0% | |
| TAAAAAACAAGGCTCTTCGA+TGG | + | chr3_2:2701276-2701295 | Msa0391190:CDS | 35.0% | |
| AAAAAACAAGGCTCTTCGAT+GGG | + | chr3_2:2701277-2701296 | Msa0391190:CDS | 35.0% | |
| ATCGATAAACAATGGCTACA+AGG | - | chr3_2:2701373-2701392 | None:intergenic | 35.0% | |
| GAACAATGTGTGACTTTGAC+GGG | - | chr3_2:2700620-2700639 | None:intergenic | 40.0% | |
| GTCAAAGTCACACATTGTTC+TGG | + | chr3_2:2700620-2700639 | Msa0391190:CDS | 40.0% | |
| CCCTGTTGAATAGGTTCAAT+TGG | - | chr3_2:2700654-2700673 | None:intergenic | 40.0% | |
| AACCTATTCAACAGGGACAA+TGG | + | chr3_2:2700658-2700677 | Msa0391190:CDS | 40.0% | |
| ACCTATTCAACAGGGACAAT+GGG | + | chr3_2:2700659-2700678 | Msa0391190:CDS | 40.0% | |
| ATGTCTAAAAGCAATTCGGG+TGG | - | chr3_2:2700693-2700712 | None:intergenic | 40.0% | |
| GGTATGTAAATCATGGAGGT+CGG | + | chr3_2:2700769-2700788 | Msa0391190:CDS | 40.0% | |
| TATCGGATGATTAGAGGGAA+CGG | - | chr3_2:2700949-2700968 | None:intergenic | 40.0% | |
| GCATTGTATCGGATGATTAG+AGG | - | chr3_2:2700955-2700974 | None:intergenic | 40.0% | |
| GTTGTGAAGCTTATAAGGGA+TGG | - | chr3_2:2701061-2701080 | None:intergenic | 40.0% | |
| CATACTTTGCAAGCCTATCA+AGG | + | chr3_2:2701213-2701232 | Msa0391190:intron | 40.0% | |
| AAACAATGGCTACAAGGTCA+AGG | - | chr3_2:2701367-2701386 | None:intergenic | 40.0% | |
| TTTCTCGTGCAGATCGAAAA+TGG | + | chr3_2:2701402-2701421 | Msa0391190:CDS | 40.0% | |
| GAACAATGTGTGACTTTGAC+GGG | - | chr3_2:2700620-2700639 | None:intergenic | 40.0% | |
| GTCAAAGTCACACATTGTTC+TGG | + | chr3_2:2700620-2700639 | Msa0391190:CDS | 40.0% | |
| CCCTGTTGAATAGGTTCAAT+TGG | - | chr3_2:2700654-2700673 | None:intergenic | 40.0% | |
| AACCTATTCAACAGGGACAA+TGG | + | chr3_2:2700658-2700677 | Msa0391190:CDS | 40.0% | |
| ACCTATTCAACAGGGACAAT+GGG | + | chr3_2:2700659-2700678 | Msa0391190:CDS | 40.0% | |
| ATGTCTAAAAGCAATTCGGG+TGG | - | chr3_2:2700693-2700712 | None:intergenic | 40.0% | |
| GGTATGTAAATCATGGAGGT+CGG | + | chr3_2:2700769-2700788 | Msa0391190:CDS | 40.0% | |
| TATCGGATGATTAGAGGGAA+CGG | - | chr3_2:2700949-2700968 | None:intergenic | 40.0% | |
| GCATTGTATCGGATGATTAG+AGG | - | chr3_2:2700955-2700974 | None:intergenic | 40.0% | |
| GTTGTGAAGCTTATAAGGGA+TGG | - | chr3_2:2701061-2701080 | None:intergenic | 40.0% | |
| CATACTTTGCAAGCCTATCA+AGG | + | chr3_2:2701213-2701232 | Msa0391190:intron | 40.0% | |
| AAACAATGGCTACAAGGTCA+AGG | - | chr3_2:2701367-2701386 | None:intergenic | 40.0% | |
| TTTCTCGTGCAGATCGAAAA+TGG | + | chr3_2:2701402-2701421 | Msa0391190:CDS | 40.0% | |
| ATTCGAAGGGTGAGACATCT+TGG | + | chr3_2:2700714-2700733 | Msa0391190:CDS | 45.0% | |
| ATTACGCCAACTCAGCAATG+TGG | + | chr3_2:2700806-2700825 | Msa0391190:intron | 45.0% | |
| ATCCTTCCACATTGCTGAGT+TGG | - | chr3_2:2700815-2700834 | None:intergenic | 45.0% | |
| ATCGGATGATTAGAGGGAAC+GGG | - | chr3_2:2700948-2700967 | None:intergenic | 45.0% | |
| GCACCAAATCTAAGTACAGC+AGG | - | chr3_2:2701010-2701029 | None:intergenic | 45.0% | |
| !! | TAAAGGTATCGATCTGGCCT+TGG | - | chr3_2:2701253-2701272 | None:intergenic | 45.0% |
| GAGTGGATAAGTGTAGTCCA+TGG | - | chr3_2:2701471-2701490 | None:intergenic | 45.0% | |
| ATTCGAAGGGTGAGACATCT+TGG | + | chr3_2:2700714-2700733 | Msa0391190:CDS | 45.0% | |
| ATTACGCCAACTCAGCAATG+TGG | + | chr3_2:2700806-2700825 | Msa0391190:intron | 45.0% | |
| ATCCTTCCACATTGCTGAGT+TGG | - | chr3_2:2700815-2700834 | None:intergenic | 45.0% | |
| ATCGGATGATTAGAGGGAAC+GGG | - | chr3_2:2700948-2700967 | None:intergenic | 45.0% | |
| GCACCAAATCTAAGTACAGC+AGG | - | chr3_2:2701010-2701029 | None:intergenic | 45.0% | |
| !! | TAAAGGTATCGATCTGGCCT+TGG | - | chr3_2:2701253-2701272 | None:intergenic | 45.0% |
| GAGTGGATAAGTGTAGTCCA+TGG | - | chr3_2:2701471-2701490 | None:intergenic | 45.0% | |
| GCCCATTGTCCCTGTTGAAT+AGG | - | chr3_2:2700663-2700682 | None:intergenic | 50.0% | |
| AAGACAACAACAGCACGCAC+AGG | - | chr3_2:2700740-2700759 | None:intergenic | 50.0% | |
| TTTCCCTTCAGTGCAGGTGA+CGG | - | chr3_2:2701176-2701195 | None:intergenic | 50.0% | |
| ! | GGATGTTTTCCCTTCAGTGC+AGG | - | chr3_2:2701182-2701201 | None:intergenic | 50.0% |
| GCAAGCCTATCAAGGCTACA+CGG | + | chr3_2:2701221-2701240 | Msa0391190:intron | 50.0% | |
| ! | TCAGTCCGTGTAGCCTTGAT+AGG | - | chr3_2:2701229-2701248 | None:intergenic | 50.0% |
| CGATGGGATGAACAGCACAA+TGG | + | chr3_2:2701293-2701312 | Msa0391190:CDS | 50.0% | |
| GGGATGAACAGCACAATGGT+TGG | + | chr3_2:2701297-2701316 | Msa0391190:CDS | 50.0% | |
| TAACACGCCCCATGACATCA+GGG | - | chr3_2:2701325-2701344 | None:intergenic | 50.0% | |
| TTAACACGCCCCATGACATC+AGG | - | chr3_2:2701326-2701345 | None:intergenic | 50.0% | |
| GCCACTCTCGCAGTTACTAA+GGG | + | chr3_2:2701424-2701443 | Msa0391190:CDS | 50.0% | |
| TCAGATGGCAAAGGCTAGGA+AGG | - | chr3_2:2701498-2701517 | None:intergenic | 50.0% | |
| GCCCATTGTCCCTGTTGAAT+AGG | - | chr3_2:2700663-2700682 | None:intergenic | 50.0% | |
| AAGACAACAACAGCACGCAC+AGG | - | chr3_2:2700740-2700759 | None:intergenic | 50.0% | |
| TTTCCCTTCAGTGCAGGTGA+CGG | - | chr3_2:2701176-2701195 | None:intergenic | 50.0% | |
| ! | GGATGTTTTCCCTTCAGTGC+AGG | - | chr3_2:2701182-2701201 | None:intergenic | 50.0% |
| GCAAGCCTATCAAGGCTACA+CGG | + | chr3_2:2701221-2701240 | Msa0391190:intron | 50.0% | |
| ! | TCAGTCCGTGTAGCCTTGAT+AGG | - | chr3_2:2701229-2701248 | None:intergenic | 50.0% |
| CGATGGGATGAACAGCACAA+TGG | + | chr3_2:2701293-2701312 | Msa0391190:CDS | 50.0% | |
| GGGATGAACAGCACAATGGT+TGG | + | chr3_2:2701297-2701316 | Msa0391190:CDS | 50.0% | |
| TAACACGCCCCATGACATCA+GGG | - | chr3_2:2701325-2701344 | None:intergenic | 50.0% | |
| TTAACACGCCCCATGACATC+AGG | - | chr3_2:2701326-2701345 | None:intergenic | 50.0% | |
| GCCACTCTCGCAGTTACTAA+GGG | + | chr3_2:2701424-2701443 | Msa0391190:CDS | 50.0% | |
| TCAGATGGCAAAGGCTAGGA+AGG | - | chr3_2:2701498-2701517 | None:intergenic | 50.0% | |
| !! | GGAGTGCTGAGAGCAAGCAT+TGG | + | chr3_2:2700586-2700605 | Msa0391190:CDS | 55.0% |
| CGCCAACTCAGCAATGTGGA+AGG | + | chr3_2:2700810-2700829 | Msa0391190:intron | 55.0% | |
| TTCTCCGTCACCTGCACTGA+AGG | + | chr3_2:2701169-2701188 | Msa0391190:CDS | 55.0% | |
| TCTCCGTCACCTGCACTGAA+GGG | + | chr3_2:2701170-2701189 | Msa0391190:CDS | 55.0% | |
| ! | TGGTTGGTGCCCTGATGTCA+TGG | + | chr3_2:2701313-2701332 | Msa0391190:CDS | 55.0% |
| ! | GGTTGGTGCCCTGATGTCAT+GGG | + | chr3_2:2701314-2701333 | Msa0391190:CDS | 55.0% |
| ! | GTTGGTGCCCTGATGTCATG+GGG | + | chr3_2:2701315-2701334 | Msa0391190:CDS | 55.0% |
| GGCCACTCTCGCAGTTACTA+AGG | + | chr3_2:2701423-2701442 | Msa0391190:CDS | 55.0% | |
| GCCCTTAGTAACTGCGAGAG+TGG | - | chr3_2:2701428-2701447 | None:intergenic | 55.0% | |
| CTCTCGCAGTTACTAAGGGC+TGG | + | chr3_2:2701428-2701447 | Msa0391190:CDS | 55.0% | |
| AAGGCTAGGAAGGCAGAGAG+TGG | - | chr3_2:2701488-2701507 | None:intergenic | 55.0% | |
| !! | GGAGTGCTGAGAGCAAGCAT+TGG | + | chr3_2:2700586-2700605 | Msa0391190:CDS | 55.0% |
| CGCCAACTCAGCAATGTGGA+AGG | + | chr3_2:2700810-2700829 | Msa0391190:intron | 55.0% | |
| TTCTCCGTCACCTGCACTGA+AGG | + | chr3_2:2701169-2701188 | Msa0391190:CDS | 55.0% | |
| TCTCCGTCACCTGCACTGAA+GGG | + | chr3_2:2701170-2701189 | Msa0391190:CDS | 55.0% | |
| ! | TGGTTGGTGCCCTGATGTCA+TGG | + | chr3_2:2701313-2701332 | Msa0391190:CDS | 55.0% |
| ! | GGTTGGTGCCCTGATGTCAT+GGG | + | chr3_2:2701314-2701333 | Msa0391190:CDS | 55.0% |
| ! | GTTGGTGCCCTGATGTCATG+GGG | + | chr3_2:2701315-2701334 | Msa0391190:CDS | 55.0% |
| GGCCACTCTCGCAGTTACTA+AGG | + | chr3_2:2701423-2701442 | Msa0391190:CDS | 55.0% | |
| GCCCTTAGTAACTGCGAGAG+TGG | - | chr3_2:2701428-2701447 | None:intergenic | 55.0% | |
| CTCTCGCAGTTACTAAGGGC+TGG | + | chr3_2:2701428-2701447 | Msa0391190:CDS | 55.0% | |
| AAGGCTAGGAAGGCAGAGAG+TGG | - | chr3_2:2701488-2701507 | None:intergenic | 55.0% | |
| ! | AGGCTACACGGACTGAGCCA+AGG | + | chr3_2:2701233-2701252 | Msa0391190:CDS | 60.0% |
| ! | AGGCTACACGGACTGAGCCA+AGG | + | chr3_2:2701233-2701252 | Msa0391190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 2700576 | 2701517 | 2700576 | ID=Msa0391190;Name=Msa0391190 |
| chr3_2 | mRNA | 2700576 | 2701517 | 2700576 | ID=Msa0391190-mRNA-1;Parent=Msa0391190;Name=Msa0391190-mRNA-1;_AED=0.40;_eAED=0.43;_QI=0|0|0|1|0|0.4|5|0|252 |
| chr3_2 | exon | 2700576 | 2700824 | 2700576 | ID=Msa0391190-mRNA-1:exon:825;Parent=Msa0391190-mRNA-1 |
| chr3_2 | exon | 2700860 | 2700907 | 2700860 | ID=Msa0391190-mRNA-1:exon:826;Parent=Msa0391190-mRNA-1 |
| chr3_2 | exon | 2700945 | 2701025 | 2700945 | ID=Msa0391190-mRNA-1:exon:827;Parent=Msa0391190-mRNA-1 |
| chr3_2 | exon | 2701116 | 2701204 | 2701116 | ID=Msa0391190-mRNA-1:exon:828;Parent=Msa0391190-mRNA-1 |
| chr3_2 | exon | 2701226 | 2701517 | 2701226 | ID=Msa0391190-mRNA-1:exon:829;Parent=Msa0391190-mRNA-1 |
| chr3_2 | CDS | 2700576 | 2700824 | 2700576 | ID=Msa0391190-mRNA-1:cds;Parent=Msa0391190-mRNA-1 |
| chr3_2 | CDS | 2700860 | 2700907 | 2700860 | ID=Msa0391190-mRNA-1:cds;Parent=Msa0391190-mRNA-1 |
| chr3_2 | CDS | 2700945 | 2701025 | 2700945 | ID=Msa0391190-mRNA-1:cds;Parent=Msa0391190-mRNA-1 |
| chr3_2 | CDS | 2701116 | 2701204 | 2701116 | ID=Msa0391190-mRNA-1:cds;Parent=Msa0391190-mRNA-1 |
| chr3_2 | CDS | 2701226 | 2701517 | 2701226 | ID=Msa0391190-mRNA-1:cds;Parent=Msa0391190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
