AlfalfaGEDB | Msa0391210

M. sativa cultivar zhongmu-4 / Msa0391210

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01167.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391210	RHN42115.1	88.580	324	25	1	1	312	1	324	0.0	572

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391210	sp\|Q8GVE5\|TLP2_ARATH	39.695	393	142	13	1	308	1	383	5.86e-66	215

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391210	A0A396GTK9	88.580	324	25	1	1	312	1	324	0.0	572

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TFs/TRs:

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Gene ID	Type	Classification
Msa0391210	TF	TUB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391210	MtrunA17_Chr8g0373341	88.580	324	25	1	1	312	1	324	0.0	572
Msa0391210	MtrunA17_Chr8g0373001	55.157	223	44	5	1	185	1	205	8.50e-65	209
Msa0391210	MtrunA17_Chr8g0373001	60.000	125	49	1	184	308	279	402	7.51e-41	147
Msa0391210	MtrunA17_Chr8g0373331	42.493	353	150	10	1	308	1	345	2.73e-64	206
Msa0391210	MtrunA17_Chr1g0155301	37.587	431	127	13	1	308	1	412	4.44e-64	207
Msa0391210	MtrunA17_Chr8g0373361	52.995	217	50	4	1	185	11	207	1.79e-60	198
Msa0391210	MtrunA17_Chr8g0373361	47.656	128	58	3	184	308	281	402	3.78e-23	98.6
Msa0391210	MtrunA17_Chr5g0404321	47.556	225	60	6	1	185	1	207	4.09e-52	176
Msa0391210	MtrunA17_Chr5g0404321	51.181	127	59	2	184	308	281	406	2.39e-30	118
Msa0391210	MtrunA17_Chr2g0315641	34.897	341	123	7	49	309	41	362	4.59e-48	165

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0391210	AT2G18280.2	39.695	393	142	13	1	308	1	383	5.96e-67	215
Msa0391210	AT2G18280.1	39.695	393	142	13	1	308	1	383	5.96e-67	215
Msa0391210	AT1G47270.3	36.158	354	112	10	50	308	44	378	5.05e-53	178
Msa0391210	AT1G47270.2	36.158	354	112	10	50	308	68	402	8.70e-53	178
Msa0391210	AT1G47270.1	36.158	354	112	10	50	308	69	403	8.90e-53	178
Msa0391210	AT1G53320.1	35.549	346	118	8	50	309	44	370	7.75e-50	170
Msa0391210	AT5G18680.1	32.749	342	146	12	50	308	39	379	1.27e-35	132
Msa0391210	AT5G18680.2	34.859	284	132	10	77	308	5	287	2.26e-31	119
Msa0391210	AT2G47900.2	34.685	222	89	5	1	184	1	204	7.13e-31	120
Msa0391210	AT2G47900.2	52.381	84	37	2	225	308	316	396	1.81e-17	82.8

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Find 67 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGCCAATCTTGCAATT+AGG	0.381085	3_2:+2709416	Msa0391210:CDS
AACCTCTTCCTAAGGGAGAA+TGG	0.415926	3_2:+2708227	Msa0391210:CDS
AAGCTACCAGAATTGAGCAG+AGG	0.699056	3_2:+2709230	Msa0391210:CDS
AAGGCTTGGAAGGCAGAGAA+TGG	0.529766	3_2:-2709482	None:intergenic
AATCTTGCAATTAGGAAGCG+CGG	0.662669	3_2:+2709424	Msa0391210:CDS
AATGAGCCTCTGCTCAATTC+TGG	0.343539	3_2:-2709236	None:intergenic
ACAAATATGTTGGTAAACTG+AGG	0.614123	3_2:+2708982	Msa0391210:CDS
ACAAATCAAGCAGATGGCAA+AGG	0.618453	3_2:-2709501	None:intergenic
ACCTCTTCCTAAGGGAGAAT+GGG	0.402298	3_2:+2708228	Msa0391210:CDS
ACGACAACAACAGCACGCGC+AGG	0.482373	3_2:-2708316	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAAATGGAATATCGAAGC+AGG	+	chr3_2:2708138-2708157	Msa0391210:CDS	30.0%
AAAAATGGAATATCGAAGCA+GGG	+	chr3_2:2708139-2708158	Msa0391210:CDS	30.0%
ATTTCCTATTTCATTGATGC+AGG	+	chr3_2:2708417-2708436	Msa0391210:intron	30.0%
AGAGAACATAAAAAACTCGA+GGG	-	chr3_2:2708494-2708513	None:intergenic	30.0%
AAGAGAACATAAAAAACTCG+AGG	-	chr3_2:2708495-2708514	None:intergenic	30.0%
ATCCGATACATTGCTTTATA+AGG	+	chr3_2:2708551-2708570	Msa0391210:CDS	30.0%
CTCCTTATAAAGCAATGTAT+CGG	-	chr3_2:2708556-2708575	None:intergenic	30.0%
ACTTACTTGCTCTACATTTA+TGG	+	chr3_2:2708741-2708760	Msa0391210:intron	30.0%
ATTTATTGTCATTCCGATTG+TGG	+	chr3_2:2708774-2708793	Msa0391210:intron	30.0%
CAATGACAATAAACCACAAT+CGG	-	chr3_2:2708790-2708809	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	2708100	2709532	2708100	ID=Msa0391210;Name=Msa0391210
chr3_2	mRNA	2708100	2709532	2708100	ID=Msa0391210-mRNA-1;Parent=Msa0391210;Name=Msa0391210-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|0\|0\|1\|0.66\|0.75\|4\|0\|312
chr3_2	exon	2708100	2708348	2708100	ID=Msa0391210-mRNA-1:exon:818;Parent=Msa0391210-mRNA-1
chr3_2	exon	2708535	2708616	2708535	ID=Msa0391210-mRNA-1:exon:819;Parent=Msa0391210-mRNA-1
chr3_2	exon	2708883	2709057	2708883	ID=Msa0391210-mRNA-1:exon:820;Parent=Msa0391210-mRNA-1
chr3_2	exon	2709100	2709532	2709100	ID=Msa0391210-mRNA-1:exon:821;Parent=Msa0391210-mRNA-1
chr3_2	CDS	2708100	2708348	2708100	ID=Msa0391210-mRNA-1:cds;Parent=Msa0391210-mRNA-1
chr3_2	CDS	2708535	2708616	2708535	ID=Msa0391210-mRNA-1:cds;Parent=Msa0391210-mRNA-1
chr3_2	CDS	2708883	2709057	2708883	ID=Msa0391210-mRNA-1:cds;Parent=Msa0391210-mRNA-1
chr3_2	CDS	2709100	2709532	2709100	ID=Msa0391210-mRNA-1:cds;Parent=Msa0391210-mRNA-1

Gene Sequence

>Msa0391210

ATGTCATTGAAAAGCATAGTTCAAGAACCCAACGGGATTAAAAATGGAATATCGAAGCAGGGTCCTGAGAGCAAGTGTTTGCTCCATCGGATAGTGTCGCATCTTGCTATGGATTCACTTCCAATTAAACCTCTTCCTAAGGGAGAATGGGAAAGTCTACCACGTGAATTGCTTTTGGACATAATCCGTAAGGTTGAAGAGAGTGAGACATCTTGGCCTGCGCGTGCTGTTGTTGTCGTTTGTGCTTCGCCTGGTCCTCATGATTATCCGATACATTGCTTTATAAGGAGGAACAGAAGAACTTCTACATTTCTGTTGTATTTGGTGCAGTCGGAGAGTAAGAATAATAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGGTCCAACTTCGTCATATCCTTGGCTGCAGATGATTTTTCTCGAGCAAGCAACAAATATGTTGGTAAACTGAGGCAAGTTTTGGCGATAAAAATATTGATTTACCCTTCTATCGACATTTCATCCTGGTCAAATTTTTGGCGCACCAAGTTCACTATATACGACACTCAACCTCCAGTGTTTGATGAAACTCTTTCTTCTTCACCAGCACTGAAGGGAAAACGTCGAATGAGAGATTCATACTTTGCAGGCCTATCAAAGCTACCAGAATTGAGCAGAGGCTCATTCGAGACCTTTATACTAAAAAACAAGGCTCTTAGATGGGATGAGCAGCGCAATGGTTGGTGCCCCGACTTCATGGGCCGTGTTAAAGTGGAATCTATGAAAAACTTTGACCTTGTAGCTGTTGTTGATCGATCTCATAATGTTTCTCCTGGAGTGCGAAAATGGCCAATCTTGCAATTAGGAAGCGCGGATGGGAAAGATATCTTCTTCATGCACTACACTTATCCATTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGATTTGTTGCATATAA

Protein sequence

>Msa0391210

MSLKSIVQEPNGIKNGISKQGPESKCLLHRIVSHLAMDSLPIKPLPKGEWESLPRELLLDIIRKVEESETSWPARAVVVVCASPGPHDYPIHCFIRRNRRTSTFLLYLVQSESKNNKLLLAAKRIRRSNFVISLAADDFSRASNKYVGKLRQVLAIKILIYPSIDISSWSNFWRTKFTIYDTQPPVFDETLSSSPALKGKRRMRDSYFAGLSKLPELSRGSFETFILKNKALRWDEQRNGWCPDFMGRVKVESMKNFDLVAVVDRSHNVSPGVRKWPILQLGSADGKDIFFMHYTYPFSAFQAFAICLICCI*