Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391240 | XP_024628855.1 | 59.286 | 140 | 35 | 2 | 117 | 234 | 182 | 321 | 1.56e-45 | 165 |
| Msa0391240 | XP_024628855.1 | 65.934 | 91 | 31 | 0 | 1 | 91 | 1 | 91 | 4.89e-23 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391240 | sp|Q8GVE5|TLP2_ARATH | 51.111 | 90 | 38 | 2 | 1 | 88 | 1 | 86 | 6.71e-18 | 85.1 |
| Msa0391240 | sp|Q8GVE5|TLP2_ARATH | 45.263 | 95 | 46 | 3 | 141 | 233 | 293 | 383 | 4.39e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391240 | A0A396GTK9 | 56.291 | 151 | 43 | 3 | 107 | 234 | 171 | 321 | 9.63e-46 | 164 |
| Msa0391240 | A0A396GTK9 | 63.918 | 97 | 35 | 0 | 1 | 97 | 1 | 97 | 1.19e-23 | 107 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0391240 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391240 | MtrunA17_Chr8g0373341 | 56.291 | 151 | 43 | 3 | 107 | 234 | 171 | 321 | 1.85e-49 | 164 |
| Msa0391240 | MtrunA17_Chr8g0373341 | 63.918 | 97 | 35 | 0 | 1 | 97 | 1 | 97 | 2.30e-27 | 107 |
| Msa0391240 | MtrunA17_Chr8g0373001 | 70.213 | 94 | 25 | 1 | 1 | 91 | 1 | 94 | 4.47e-37 | 134 |
| Msa0391240 | MtrunA17_Chr8g0373001 | 48.800 | 125 | 41 | 3 | 131 | 233 | 279 | 402 | 1.32e-25 | 103 |
| Msa0391240 | MtrunA17_Chr8g0373361 | 68.182 | 88 | 26 | 1 | 1 | 88 | 11 | 96 | 1.36e-33 | 125 |
| Msa0391240 | MtrunA17_Chr8g0373331 | 44.444 | 162 | 58 | 4 | 1 | 131 | 1 | 161 | 5.97e-31 | 117 |
| Msa0391240 | MtrunA17_Chr8g0373331 | 46.400 | 125 | 56 | 4 | 121 | 235 | 224 | 347 | 6.59e-25 | 100 |
| Msa0391240 | MtrunA17_Chr5g0404321 | 54.167 | 96 | 39 | 2 | 1 | 91 | 1 | 96 | 3.00e-26 | 105 |
| Msa0391240 | MtrunA17_Chr5g0404321 | 54.945 | 91 | 38 | 2 | 145 | 233 | 317 | 406 | 3.40e-21 | 91.3 |
| Msa0391240 | MtrunA17_Chr8g0373351 | 49.541 | 109 | 38 | 4 | 131 | 233 | 187 | 284 | 1.29e-18 | 82.8 |
| Msa0391240 | MtrunA17_Chr1g0155301 | 53.488 | 86 | 37 | 2 | 150 | 233 | 328 | 412 | 2.61e-17 | 80.1 |
| Msa0391240 | MtrunA17_Chr1g0155301 | 40.741 | 108 | 44 | 3 | 1 | 88 | 1 | 108 | 5.88e-15 | 73.6 |
| Msa0391240 | MtrunA17_Chr1g0196071 | 45.263 | 95 | 50 | 2 | 139 | 233 | 300 | 392 | 1.49e-15 | 75.1 |
| Msa0391240 | MtrunA17_Chr2g0278511 | 65.909 | 44 | 15 | 0 | 45 | 88 | 49 | 92 | 8.31e-13 | 67.0 |
| Msa0391240 | MtrunA17_Chr2g0278511 | 32.624 | 141 | 84 | 3 | 103 | 233 | 278 | 417 | 2.34e-12 | 65.9 |
| Msa0391240 | MtrunA17_Chr2g0286441 | 41.463 | 82 | 47 | 1 | 152 | 233 | 303 | 383 | 8.94e-13 | 67.0 |
| Msa0391240 | MtrunA17_Chr1g0201891 | 38.947 | 95 | 47 | 3 | 1 | 88 | 1 | 91 | 3.80e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391240 | AT2G18280.2 | 51.111 | 90 | 38 | 2 | 1 | 88 | 1 | 86 | 6.82e-19 | 85.1 |
| Msa0391240 | AT2G18280.2 | 45.263 | 95 | 46 | 3 | 141 | 233 | 293 | 383 | 4.46e-15 | 73.9 |
| Msa0391240 | AT2G18280.1 | 51.111 | 90 | 38 | 2 | 1 | 88 | 1 | 86 | 6.82e-19 | 85.1 |
| Msa0391240 | AT2G18280.1 | 45.263 | 95 | 46 | 3 | 141 | 233 | 293 | 383 | 4.46e-15 | 73.9 |
| Msa0391240 | AT1G47270.3 | 46.067 | 89 | 42 | 2 | 150 | 233 | 291 | 378 | 8.79e-15 | 73.2 |
| Msa0391240 | AT1G47270.3 | 58.696 | 46 | 19 | 0 | 43 | 88 | 37 | 82 | 9.55e-11 | 61.2 |
| Msa0391240 | AT1G47270.1 | 46.067 | 89 | 42 | 2 | 150 | 233 | 316 | 403 | 9.60e-15 | 73.2 |
| Msa0391240 | AT1G47270.1 | 58.696 | 46 | 19 | 0 | 43 | 88 | 62 | 107 | 9.08e-11 | 61.6 |
| Msa0391240 | AT1G47270.2 | 46.067 | 89 | 42 | 2 | 150 | 233 | 315 | 402 | 1.00e-14 | 73.2 |
| Msa0391240 | AT1G47270.2 | 58.696 | 46 | 19 | 0 | 43 | 88 | 61 | 106 | 8.98e-11 | 61.6 |
| Msa0391240 | AT2G47900.2 | 38.889 | 90 | 53 | 2 | 1 | 88 | 1 | 90 | 7.64e-14 | 70.5 |
| Msa0391240 | AT2G47900.2 | 37.755 | 98 | 60 | 1 | 136 | 233 | 300 | 396 | 2.97e-12 | 65.9 |
| Msa0391240 | AT2G47900.1 | 38.889 | 90 | 53 | 2 | 1 | 88 | 1 | 90 | 7.64e-14 | 70.5 |
| Msa0391240 | AT2G47900.1 | 37.755 | 98 | 60 | 1 | 136 | 233 | 300 | 396 | 2.97e-12 | 65.9 |
| Msa0391240 | AT2G47900.3 | 38.889 | 90 | 53 | 2 | 1 | 88 | 1 | 90 | 7.66e-14 | 70.5 |
| Msa0391240 | AT2G47900.3 | 37.755 | 98 | 60 | 1 | 136 | 233 | 301 | 397 | 2.98e-12 | 65.9 |
| Msa0391240 | AT1G25280.3 | 41.584 | 101 | 45 | 2 | 146 | 233 | 158 | 257 | 3.29e-13 | 67.8 |
| Msa0391240 | AT1G25280.2 | 41.584 | 101 | 45 | 2 | 146 | 233 | 158 | 257 | 3.29e-13 | 67.8 |
| Msa0391240 | AT1G25280.1 | 41.584 | 101 | 45 | 2 | 146 | 233 | 336 | 435 | 6.46e-13 | 67.8 |
| Msa0391240 | AT1G25280.1 | 48.649 | 74 | 35 | 2 | 15 | 88 | 27 | 97 | 6.90e-13 | 67.8 |
| Msa0391240 | AT5G18680.2 | 41.379 | 87 | 46 | 1 | 152 | 233 | 201 | 287 | 9.51e-13 | 66.6 |
| Msa0391240 | AT1G76900.2 | 65.909 | 44 | 15 | 0 | 45 | 88 | 52 | 95 | 1.28e-12 | 67.0 |
| Msa0391240 | AT1G76900.1 | 65.909 | 44 | 15 | 0 | 45 | 88 | 52 | 95 | 1.28e-12 | 67.0 |
| Msa0391240 | AT1G76900.3 | 65.909 | 44 | 15 | 0 | 45 | 88 | 52 | 95 | 1.28e-12 | 67.0 |
| Msa0391240 | AT5G18680.1 | 41.379 | 87 | 46 | 1 | 152 | 233 | 293 | 379 | 1.34e-12 | 66.6 |
Find 49 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCCTGCATTGCAAAAT+TGG | 0.167272 | 3_2:+2742095 | Msa0391240:CDS |
| TCTACCACATGAATTGCTTT+TGG | 0.292282 | 3_2:+2741016 | Msa0391240:CDS |
| CATGGCTTTGCTTTATTAAG+AGG | 0.309230 | 3_2:+2741311 | Msa0391240:CDS |
| TGGTTGGGGTGCTGACTTCA+TGG | 0.331126 | 3_2:+2742012 | Msa0391240:CDS |
| CCCTGTTGAATAGGTTCAAT+TGG | 0.340120 | 3_2:-2740981 | None:intergenic |
| TTGAAGAGAGTGAGAGATAT+TGG | 0.344771 | 3_2:+2741054 | Msa0391240:CDS |
| TCCAATTGAACCTATTCAAC+AGG | 0.359438 | 3_2:+2740980 | Msa0391240:CDS |
| TGCTTTCCTACATGCAAGAT+TGG | 0.359787 | 3_2:-2742118 | None:intergenic |
| GCCCATTGTCCCTGTTGAAT+AGG | 0.371158 | 3_2:-2740990 | None:intergenic |
| GCAGATGGCAAAGGCTTGTA+AGG | 0.435286 | 3_2:-2742188 | None:intergenic |
| GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 3_2:+2741102 | Msa0391240:CDS |
| GGATGAGCAACACAATGGTT+GGG | 0.451426 | 3_2:+2741997 | Msa0391240:CDS |
| TTTGCCATCTGCTTGATTCG+TGG | 0.452748 | 3_2:+2742199 | Msa0391240:CDS |
| ACCTATTCAACAGGGACAAT+GGG | 0.456062 | 3_2:+2740989 | Msa0391240:CDS |
| TCACAGTTTCCACTCTAAAA+CGG | 0.468242 | 3_2:-2742036 | None:intergenic |
| GTCAAACTCACATCTTGCTC+TGG | 0.476106 | 3_2:+2740950 | Msa0391240:CDS |
| AAGCATGGTCGGAGAAATCA+AGG | 0.483624 | 3_2:+2740872 | Msa0391240:CDS |
| CATGGATAAGCACGGGGACC+AGG | 0.484337 | 3_2:-2741292 | None:intergenic |
| TCTCACTCTCTTCAACCCTT+CGG | 0.484378 | 3_2:-2741046 | None:intergenic |
| GGGATGAGCAACACAATGGT+TGG | 0.490209 | 3_2:+2741996 | Msa0391240:CDS |
| TACATTGCATCAAATACATC+AGG | 0.496649 | 3_2:-2741353 | None:intergenic |
| CTGGTCCCCGTGCTTATCCA+TGG | 0.499025 | 3_2:+2741293 | Msa0391240:CDS |
| GCAAAGCCATGGATAAGCAC+GGG | 0.532440 | 3_2:-2741299 | None:intergenic |
| AATGAGACTTGGCTCAGTGC+TGG | 0.542748 | 3_2:-2741938 | None:intergenic |
| AACCTATTCAACAGGGACAA+TGG | 0.542913 | 3_2:+2740988 | Msa0391240:CDS |
| GGTTGGGGTGCTGACTTCAT+GGG | 0.547030 | 3_2:+2742013 | Msa0391240:CDS |
| AAATTCTCGCTCTCAGCACC+CGG | 0.552546 | 3_2:-2740918 | None:intergenic |
| AAAGTTTCATCAAATACAGA+AGG | 0.566100 | 3_2:-2741905 | None:intergenic |
| TAAAGGTCTCAAATGAGACT+TGG | 0.571910 | 3_2:-2741949 | None:intergenic |
| AAGACGACAGCAGAACGCGC+AGG | 0.587124 | 3_2:-2741077 | None:intergenic |
| AGCAAAGCCATGGATAAGCA+CGG | 0.591840 | 3_2:-2741300 | None:intergenic |
| CTCTTAATAAAGCAAAGCCA+TGG | 0.593697 | 3_2:-2741310 | None:intergenic |
| ATGGCATTGAAAAGCATGGT+CGG | 0.597357 | 3_2:+2740861 | Msa0391240:CDS |
| AATGTCGTATATAGTAAACT+TGG | 0.599300 | 3_2:-2741879 | None:intergenic |
| AATTGGCCAATCTTGCATGT+AGG | 0.601422 | 3_2:+2742112 | Msa0391240:CDS |
| ACGAATCAAGCAGATGGCAA+AGG | 0.605785 | 3_2:-2742197 | None:intergenic |
| ACTTGGCTCAGTGCTGGTGA+AGG | 0.615559 | 3_2:-2741932 | None:intergenic |
| GATGAGCAACACAATGGTTG+GGG | 0.615639 | 3_2:+2741998 | Msa0391240:CDS |
| TATGAGATCGATCAACTACA+AGG | 0.618807 | 3_2:-2742069 | None:intergenic |
| AAACATGGCATTGAAAAGCA+TGG | 0.626528 | 3_2:+2740857 | None:intergenic |
| TATGCCACGAATCAAGCAGA+TGG | 0.633849 | 3_2:-2742203 | None:intergenic |
| AAGGCTTGTAAGGAAGAGAG+TGG | 0.656514 | 3_2:-2742178 | None:intergenic |
| GCATGGTCGGAGAAATCAAG+GGG | 0.659382 | 3_2:+2740874 | Msa0391240:CDS |
| CCAATTGAACCTATTCAACA+GGG | 0.662176 | 3_2:+2740981 | Msa0391240:CDS |
| AGCATGGTCGGAGAAATCAA+GGG | 0.684102 | 3_2:+2740873 | Msa0391240:CDS |
| ATGTCCAAAAGCAATTCATG+TGG | 0.684608 | 3_2:-2741020 | None:intergenic |
| CAAAGCCATGGATAAGCACG+GGG | 0.695719 | 3_2:-2741298 | None:intergenic |
| ATATGGGATGAGCAACACAA+TGG | 0.702664 | 3_2:+2741992 | Msa0391240:CDS |
| CTTCGGTATGTAAATCATGG+AGG | 0.713760 | 3_2:+2741105 | Msa0391240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTGATTTTTATACATA+TGG | + | chr3_2:2741836-2741855 | Msa0391240:intron | 15.0% |
| !!! | CAATTTGATTTTTATACATA+TGG | + | chr3_2:2741836-2741855 | Msa0391240:intron | 15.0% |
| !!! | TATTCAATGTCTTTGAAAAA+GGG | - | chr3_2:2741405-2741424 | None:intergenic | 20.0% |
| !!! | ATATTCAATGTCTTTGAAAA+AGG | - | chr3_2:2741406-2741425 | None:intergenic | 20.0% |
| !! | AAAATACATGTAAGAGAAAT+AGG | - | chr3_2:2741568-2741587 | None:intergenic | 20.0% |
| !! | TGTATAAAAATCAAATTGTG+AGG | - | chr3_2:2741834-2741853 | None:intergenic | 20.0% |
| !!! | TATTCAATGTCTTTGAAAAA+GGG | - | chr3_2:2741405-2741424 | None:intergenic | 20.0% |
| !!! | ATATTCAATGTCTTTGAAAA+AGG | - | chr3_2:2741406-2741425 | None:intergenic | 20.0% |
| !! | AAAATACATGTAAGAGAAAT+AGG | - | chr3_2:2741568-2741587 | None:intergenic | 20.0% |
| !! | TGTATAAAAATCAAATTGTG+AGG | - | chr3_2:2741834-2741853 | None:intergenic | 20.0% |
| ! | TAAAAATGGAATATCAAAGC+CGG | + | chr3_2:2740899-2740918 | Msa0391240:CDS | 25.0% |
| ! | AGAGAACATAAAAATCATGA+GGG | - | chr3_2:2741251-2741270 | None:intergenic | 25.0% |
| ! | AAGAGAACATAAAAATCATG+AGG | - | chr3_2:2741252-2741271 | None:intergenic | 25.0% |
| ! | ACAAATATGTTTGTAAACTG+CGG | + | chr3_2:2741744-2741763 | Msa0391240:intron | 25.0% |
| ! | ATCAAATTGTGAGGATTATA+CGG | - | chr3_2:2741825-2741844 | None:intergenic | 25.0% |
| !! | TTGATTTTTATACATATGGC+AGG | + | chr3_2:2741840-2741859 | Msa0391240:intron | 25.0% |
| ! | AATGTCGTATATAGTAAACT+TGG | - | chr3_2:2741882-2741901 | None:intergenic | 25.0% |
| ! | AAAGTTTCATCAAATACAGA+AGG | - | chr3_2:2741908-2741927 | None:intergenic | 25.0% |
| !!! | AGTCTTGTTTTTGAGTATAA+AGG | - | chr3_2:2741969-2741988 | None:intergenic | 25.0% |
| ! | TCAAAAACAAGACTCTTATA+TGG | + | chr3_2:2741975-2741994 | Msa0391240:CDS | 25.0% |
| ! | CAAAAACAAGACTCTTATAT+GGG | + | chr3_2:2741976-2741995 | Msa0391240:CDS | 25.0% |
| ! | TAAAAATGGAATATCAAAGC+CGG | + | chr3_2:2740899-2740918 | Msa0391240:CDS | 25.0% |
| ! | AGAGAACATAAAAATCATGA+GGG | - | chr3_2:2741251-2741270 | None:intergenic | 25.0% |
| ! | AAGAGAACATAAAAATCATG+AGG | - | chr3_2:2741252-2741271 | None:intergenic | 25.0% |
| ! | ACAAATATGTTTGTAAACTG+CGG | + | chr3_2:2741744-2741763 | Msa0391240:intron | 25.0% |
| ! | ATCAAATTGTGAGGATTATA+CGG | - | chr3_2:2741825-2741844 | None:intergenic | 25.0% |
| !! | TTGATTTTTATACATATGGC+AGG | + | chr3_2:2741840-2741859 | Msa0391240:intron | 25.0% |
| ! | AATGTCGTATATAGTAAACT+TGG | - | chr3_2:2741882-2741901 | None:intergenic | 25.0% |
| ! | AAAGTTTCATCAAATACAGA+AGG | - | chr3_2:2741908-2741927 | None:intergenic | 25.0% |
| !!! | AGTCTTGTTTTTGAGTATAA+AGG | - | chr3_2:2741969-2741988 | None:intergenic | 25.0% |
| ! | TCAAAAACAAGACTCTTATA+TGG | + | chr3_2:2741975-2741994 | Msa0391240:CDS | 25.0% |
| ! | CAAAAACAAGACTCTTATAT+GGG | + | chr3_2:2741976-2741995 | Msa0391240:CDS | 25.0% |
| GAAATCAAGGGGATTAAAAA+TGG | + | chr3_2:2740885-2740904 | Msa0391240:CDS | 30.0% | |
| AAAAATGGAATATCAAAGCC+GGG | + | chr3_2:2740900-2740919 | Msa0391240:CDS | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | + | chr3_2:2741178-2741197 | Msa0391240:intron | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | - | chr3_2:2741185-2741204 | None:intergenic | 30.0% | |
| TAAATTATTCACCCACTTTC+TGG | + | chr3_2:2741204-2741223 | Msa0391240:intron | 30.0% | |
| TACATTGCATCAAATACATC+AGG | - | chr3_2:2741356-2741375 | None:intergenic | 30.0% | |
| !!! | TTAAGCAGTTTGTTTTGGTT+TGG | + | chr3_2:2741601-2741620 | Msa0391240:intron | 30.0% |
| TCAAATTGTGAGGATTATAC+GGG | - | chr3_2:2741824-2741843 | None:intergenic | 30.0% | |
| ! | ATATGGCAGGTCAAATTTTT+GGG | + | chr3_2:2741853-2741872 | Msa0391240:intron | 30.0% |
| GAAATCAAGGGGATTAAAAA+TGG | + | chr3_2:2740885-2740904 | Msa0391240:CDS | 30.0% | |
| AAAAATGGAATATCAAAGCC+GGG | + | chr3_2:2740900-2740919 | Msa0391240:CDS | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | + | chr3_2:2741178-2741197 | Msa0391240:intron | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | - | chr3_2:2741185-2741204 | None:intergenic | 30.0% | |
| TAAATTATTCACCCACTTTC+TGG | + | chr3_2:2741204-2741223 | Msa0391240:intron | 30.0% | |
| TACATTGCATCAAATACATC+AGG | - | chr3_2:2741356-2741375 | None:intergenic | 30.0% | |
| !!! | TTAAGCAGTTTGTTTTGGTT+TGG | + | chr3_2:2741601-2741620 | Msa0391240:intron | 30.0% |
| TCAAATTGTGAGGATTATAC+GGG | - | chr3_2:2741824-2741843 | None:intergenic | 30.0% | |
| ! | ATATGGCAGGTCAAATTTTT+GGG | + | chr3_2:2741853-2741872 | Msa0391240:intron | 30.0% |
| TCCAATTGAACCTATTCAAC+AGG | + | chr3_2:2740980-2740999 | Msa0391240:CDS | 35.0% | |
| CCAATTGAACCTATTCAACA+GGG | + | chr3_2:2740981-2741000 | Msa0391240:CDS | 35.0% | |
| ! | TCTACCACATGAATTGCTTT+TGG | + | chr3_2:2741016-2741035 | Msa0391240:CDS | 35.0% |
| ATGTCCAAAAGCAATTCATG+TGG | - | chr3_2:2741023-2741042 | None:intergenic | 35.0% | |
| TTGAAGAGAGTGAGAGATAT+TGG | + | chr3_2:2741054-2741073 | Msa0391240:CDS | 35.0% | |
| !! | AGTCTTGATGATCTCTTTTG+TGG | - | chr3_2:2741135-2741154 | None:intergenic | 35.0% |
| AATGTGATCATTCCACATTG+CGG | - | chr3_2:2741161-2741180 | None:intergenic | 35.0% | |
| ! | TTTGGATTAGACCAGAAAGT+GGG | - | chr3_2:2741218-2741237 | None:intergenic | 35.0% |
| ! | ATTTGGATTAGACCAGAAAG+TGG | - | chr3_2:2741219-2741238 | None:intergenic | 35.0% |
| CATGAGGGAAAAGACTAATT+TGG | - | chr3_2:2741236-2741255 | None:intergenic | 35.0% | |
| CTCTTAATAAAGCAAAGCCA+TGG | - | chr3_2:2741313-2741332 | None:intergenic | 35.0% | |
| ! | CATGGCTTTGCTTTATTAAG+AGG | + | chr3_2:2741311-2741330 | Msa0391240:CDS | 35.0% |
| ! | CAATGTCTTTGAAAAAGGGA+TGG | - | chr3_2:2741401-2741420 | None:intergenic | 35.0% |
| ! | ACCTACTTGCTCTAAACTTA+AGG | + | chr3_2:2741489-2741508 | Msa0391240:intron | 35.0% |
| ! | TCCTTAAGTTTAGAGCAAGT+AGG | - | chr3_2:2741493-2741512 | None:intergenic | 35.0% |
| ATTTCTTGTCATTCCGATTG+TGG | + | chr3_2:2741526-2741545 | Msa0391240:intron | 35.0% | |
| !! | CGCATTTAAGCAGTTTGTTT+TGG | + | chr3_2:2741596-2741615 | Msa0391240:intron | 35.0% |
| !! | TTGGTTTGGTTGTAATTGCA+TGG | + | chr3_2:2741615-2741634 | Msa0391240:intron | 35.0% |
| GAGTTGAGAAAAATCATCTC+CGG | - | chr3_2:2741713-2741732 | None:intergenic | 35.0% | |
| ! | TTGTAAACTGCGGTATGTTT+TGG | + | chr3_2:2741754-2741773 | Msa0391240:intron | 35.0% |
| AAATTGTGAGGATTATACGG+GGG | - | chr3_2:2741822-2741841 | None:intergenic | 35.0% | |
| CAAATTGTGAGGATTATACG+GGG | - | chr3_2:2741823-2741842 | None:intergenic | 35.0% | |
| ! | CATATGGCAGGTCAAATTTT+TGG | + | chr3_2:2741852-2741871 | Msa0391240:intron | 35.0% |
| ! | TATGGCAGGTCAAATTTTTG+GGG | + | chr3_2:2741854-2741873 | Msa0391240:intron | 35.0% |
| TAAAGGTCTCAAATGAGACT+TGG | - | chr3_2:2741952-2741971 | None:intergenic | 35.0% | |
| ! | TCACAGTTTCCACTCTAAAA+CGG | - | chr3_2:2742039-2742058 | None:intergenic | 35.0% |
| TATGAGATCGATCAACTACA+AGG | - | chr3_2:2742072-2742091 | None:intergenic | 35.0% | |
| TTTCTCCTGCATTGCAAAAT+TGG | + | chr3_2:2742095-2742114 | Msa0391240:CDS | 35.0% | |
| TCCAATTGAACCTATTCAAC+AGG | + | chr3_2:2740980-2740999 | Msa0391240:CDS | 35.0% | |
| CCAATTGAACCTATTCAACA+GGG | + | chr3_2:2740981-2741000 | Msa0391240:CDS | 35.0% | |
| ! | TCTACCACATGAATTGCTTT+TGG | + | chr3_2:2741016-2741035 | Msa0391240:CDS | 35.0% |
| ATGTCCAAAAGCAATTCATG+TGG | - | chr3_2:2741023-2741042 | None:intergenic | 35.0% | |
| TTGAAGAGAGTGAGAGATAT+TGG | + | chr3_2:2741054-2741073 | Msa0391240:CDS | 35.0% | |
| !! | AGTCTTGATGATCTCTTTTG+TGG | - | chr3_2:2741135-2741154 | None:intergenic | 35.0% |
| AATGTGATCATTCCACATTG+CGG | - | chr3_2:2741161-2741180 | None:intergenic | 35.0% | |
| ! | TTTGGATTAGACCAGAAAGT+GGG | - | chr3_2:2741218-2741237 | None:intergenic | 35.0% |
| ! | ATTTGGATTAGACCAGAAAG+TGG | - | chr3_2:2741219-2741238 | None:intergenic | 35.0% |
| CATGAGGGAAAAGACTAATT+TGG | - | chr3_2:2741236-2741255 | None:intergenic | 35.0% | |
| CTCTTAATAAAGCAAAGCCA+TGG | - | chr3_2:2741313-2741332 | None:intergenic | 35.0% | |
| ! | CATGGCTTTGCTTTATTAAG+AGG | + | chr3_2:2741311-2741330 | Msa0391240:CDS | 35.0% |
| ! | CAATGTCTTTGAAAAAGGGA+TGG | - | chr3_2:2741401-2741420 | None:intergenic | 35.0% |
| ! | ACCTACTTGCTCTAAACTTA+AGG | + | chr3_2:2741489-2741508 | Msa0391240:intron | 35.0% |
| ! | TCCTTAAGTTTAGAGCAAGT+AGG | - | chr3_2:2741493-2741512 | None:intergenic | 35.0% |
| ATTTCTTGTCATTCCGATTG+TGG | + | chr3_2:2741526-2741545 | Msa0391240:intron | 35.0% | |
| !! | CGCATTTAAGCAGTTTGTTT+TGG | + | chr3_2:2741596-2741615 | Msa0391240:intron | 35.0% |
| !! | TTGGTTTGGTTGTAATTGCA+TGG | + | chr3_2:2741615-2741634 | Msa0391240:intron | 35.0% |
| GAGTTGAGAAAAATCATCTC+CGG | - | chr3_2:2741713-2741732 | None:intergenic | 35.0% | |
| ! | TTGTAAACTGCGGTATGTTT+TGG | + | chr3_2:2741754-2741773 | Msa0391240:intron | 35.0% |
| AAATTGTGAGGATTATACGG+GGG | - | chr3_2:2741822-2741841 | None:intergenic | 35.0% | |
| CAAATTGTGAGGATTATACG+GGG | - | chr3_2:2741823-2741842 | None:intergenic | 35.0% | |
| ! | CATATGGCAGGTCAAATTTT+TGG | + | chr3_2:2741852-2741871 | Msa0391240:intron | 35.0% |
| ! | TATGGCAGGTCAAATTTTTG+GGG | + | chr3_2:2741854-2741873 | Msa0391240:intron | 35.0% |
| TAAAGGTCTCAAATGAGACT+TGG | - | chr3_2:2741952-2741971 | None:intergenic | 35.0% | |
| ! | TCACAGTTTCCACTCTAAAA+CGG | - | chr3_2:2742039-2742058 | None:intergenic | 35.0% |
| TATGAGATCGATCAACTACA+AGG | - | chr3_2:2742072-2742091 | None:intergenic | 35.0% | |
| TTTCTCCTGCATTGCAAAAT+TGG | + | chr3_2:2742095-2742114 | Msa0391240:CDS | 35.0% | |
| ! | ATGGCATTGAAAAGCATGGT+CGG | + | chr3_2:2740861-2740880 | Msa0391240:CDS | 40.0% |
| CCCTGTTGAATAGGTTCAAT+TGG | - | chr3_2:2740984-2741003 | None:intergenic | 40.0% | |
| AACCTATTCAACAGGGACAA+TGG | + | chr3_2:2740988-2741007 | Msa0391240:CDS | 40.0% | |
| ACCTATTCAACAGGGACAAT+GGG | + | chr3_2:2740989-2741008 | Msa0391240:CDS | 40.0% | |
| ! | TGCTTTTGGACATAATCCGA+AGG | + | chr3_2:2741030-2741049 | Msa0391240:CDS | 40.0% |
| ! | GCTTTTGGACATAATCCGAA+GGG | + | chr3_2:2741031-2741050 | Msa0391240:CDS | 40.0% |
| GTGCTTCGGTATGTAAATCA+TGG | + | chr3_2:2741102-2741121 | Msa0391240:CDS | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | chr3_2:2741105-2741124 | Msa0391240:CDS | 40.0% | |
| CTTCATGTGTATGAATAGCC+TGG | + | chr3_2:2741274-2741293 | Msa0391240:intron | 40.0% | |
| TGCTGAGAATGAACCACAAT+CGG | - | chr3_2:2741542-2741561 | None:intergenic | 40.0% | |
| TTTGGTTGTAATTGCATGGC+AGG | + | chr3_2:2741619-2741638 | Msa0391240:intron | 40.0% | |
| TTGGTTGTAATTGCATGGCA+GGG | + | chr3_2:2741620-2741639 | Msa0391240:intron | 40.0% | |
| ! | AGTTGTTATTAGCCGCGAAA+AGG | + | chr3_2:2741656-2741675 | Msa0391240:intron | 40.0% |
| AACTTCGTCATATCCTTGAC+CGG | + | chr3_2:2741691-2741710 | Msa0391240:intron | 40.0% | |
| AGAAAAATCATCTCCGGTCA+AGG | - | chr3_2:2741707-2741726 | None:intergenic | 40.0% | |
| ATATGGGATGAGCAACACAA+TGG | + | chr3_2:2741992-2742011 | Msa0391240:CDS | 40.0% | |
| ! | ATTGGCCAATTTTGCAATGC+AGG | - | chr3_2:2742103-2742122 | None:intergenic | 40.0% |
| AATTGGCCAATCTTGCATGT+AGG | + | chr3_2:2742112-2742131 | Msa0391240:CDS | 40.0% | |
| TGCTTTCCTACATGCAAGAT+TGG | - | chr3_2:2742121-2742140 | None:intergenic | 40.0% | |
| ! | ATGGCATTGAAAAGCATGGT+CGG | + | chr3_2:2740861-2740880 | Msa0391240:CDS | 40.0% |
| CCCTGTTGAATAGGTTCAAT+TGG | - | chr3_2:2740984-2741003 | None:intergenic | 40.0% | |
| AACCTATTCAACAGGGACAA+TGG | + | chr3_2:2740988-2741007 | Msa0391240:CDS | 40.0% | |
| ACCTATTCAACAGGGACAAT+GGG | + | chr3_2:2740989-2741008 | Msa0391240:CDS | 40.0% | |
| ! | TGCTTTTGGACATAATCCGA+AGG | + | chr3_2:2741030-2741049 | Msa0391240:CDS | 40.0% |
| ! | GCTTTTGGACATAATCCGAA+GGG | + | chr3_2:2741031-2741050 | Msa0391240:CDS | 40.0% |
| GTGCTTCGGTATGTAAATCA+TGG | + | chr3_2:2741102-2741121 | Msa0391240:CDS | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | chr3_2:2741105-2741124 | Msa0391240:CDS | 40.0% | |
| CTTCATGTGTATGAATAGCC+TGG | + | chr3_2:2741274-2741293 | Msa0391240:intron | 40.0% | |
| TGCTGAGAATGAACCACAAT+CGG | - | chr3_2:2741542-2741561 | None:intergenic | 40.0% | |
| TTTGGTTGTAATTGCATGGC+AGG | + | chr3_2:2741619-2741638 | Msa0391240:intron | 40.0% | |
| TTGGTTGTAATTGCATGGCA+GGG | + | chr3_2:2741620-2741639 | Msa0391240:intron | 40.0% | |
| ! | AGTTGTTATTAGCCGCGAAA+AGG | + | chr3_2:2741656-2741675 | Msa0391240:intron | 40.0% |
| AACTTCGTCATATCCTTGAC+CGG | + | chr3_2:2741691-2741710 | Msa0391240:intron | 40.0% | |
| AGAAAAATCATCTCCGGTCA+AGG | - | chr3_2:2741707-2741726 | None:intergenic | 40.0% | |
| ATATGGGATGAGCAACACAA+TGG | + | chr3_2:2741992-2742011 | Msa0391240:CDS | 40.0% | |
| ! | ATTGGCCAATTTTGCAATGC+AGG | - | chr3_2:2742103-2742122 | None:intergenic | 40.0% |
| AATTGGCCAATCTTGCATGT+AGG | + | chr3_2:2742112-2742131 | Msa0391240:CDS | 40.0% | |
| TGCTTTCCTACATGCAAGAT+TGG | - | chr3_2:2742121-2742140 | None:intergenic | 40.0% | |
| AAGCATGGTCGGAGAAATCA+AGG | + | chr3_2:2740872-2740891 | Msa0391240:CDS | 45.0% | |
| AGCATGGTCGGAGAAATCAA+GGG | + | chr3_2:2740873-2740892 | Msa0391240:CDS | 45.0% | |
| GTCAAACTCACATCTTGCTC+TGG | + | chr3_2:2740950-2740969 | Msa0391240:CDS | 45.0% | |
| TCTCACTCTCTTCAACCCTT+CGG | - | chr3_2:2741049-2741068 | None:intergenic | 45.0% | |
| ! | TGCTGTCGTCTTTTGTGCTT+CGG | + | chr3_2:2741088-2741107 | Msa0391240:CDS | 45.0% |
| ATCAAGACTCTTCCGCAATG+TGG | + | chr3_2:2741146-2741165 | Msa0391240:intron | 45.0% | |
| AGCAAAGCCATGGATAAGCA+CGG | - | chr3_2:2741303-2741322 | None:intergenic | 45.0% | |
| TAGCCGCGAAAAGGATATGA+CGG | + | chr3_2:2741665-2741684 | Msa0391240:intron | 45.0% | |
| GGTCAAGGATATGACGAAGT+TGG | - | chr3_2:2741692-2741711 | None:intergenic | 45.0% | |
| GGATGAGCAACACAATGGTT+GGG | + | chr3_2:2741997-2742016 | Msa0391240:CDS | 45.0% | |
| GATGAGCAACACAATGGTTG+GGG | + | chr3_2:2741998-2742017 | Msa0391240:CDS | 45.0% | |
| AAGGCTTGTAAGGAAGAGAG+TGG | - | chr3_2:2742181-2742200 | None:intergenic | 45.0% | |
| ACGAATCAAGCAGATGGCAA+AGG | - | chr3_2:2742200-2742219 | None:intergenic | 45.0% | |
| ! | TTTGCCATCTGCTTGATTCG+TGG | + | chr3_2:2742199-2742218 | Msa0391240:CDS | 45.0% |
| TATGCCACGAATCAAGCAGA+TGG | - | chr3_2:2742206-2742225 | None:intergenic | 45.0% | |
| AAGCATGGTCGGAGAAATCA+AGG | + | chr3_2:2740872-2740891 | Msa0391240:CDS | 45.0% | |
| AGCATGGTCGGAGAAATCAA+GGG | + | chr3_2:2740873-2740892 | Msa0391240:CDS | 45.0% | |
| GTCAAACTCACATCTTGCTC+TGG | + | chr3_2:2740950-2740969 | Msa0391240:CDS | 45.0% | |
| TCTCACTCTCTTCAACCCTT+CGG | - | chr3_2:2741049-2741068 | None:intergenic | 45.0% | |
| ! | TGCTGTCGTCTTTTGTGCTT+CGG | + | chr3_2:2741088-2741107 | Msa0391240:CDS | 45.0% |
| ATCAAGACTCTTCCGCAATG+TGG | + | chr3_2:2741146-2741165 | Msa0391240:intron | 45.0% | |
| AGCAAAGCCATGGATAAGCA+CGG | - | chr3_2:2741303-2741322 | None:intergenic | 45.0% | |
| TAGCCGCGAAAAGGATATGA+CGG | + | chr3_2:2741665-2741684 | Msa0391240:intron | 45.0% | |
| GGTCAAGGATATGACGAAGT+TGG | - | chr3_2:2741692-2741711 | None:intergenic | 45.0% | |
| GGATGAGCAACACAATGGTT+GGG | + | chr3_2:2741997-2742016 | Msa0391240:CDS | 45.0% | |
| GATGAGCAACACAATGGTTG+GGG | + | chr3_2:2741998-2742017 | Msa0391240:CDS | 45.0% | |
| AAGGCTTGTAAGGAAGAGAG+TGG | - | chr3_2:2742181-2742200 | None:intergenic | 45.0% | |
| ACGAATCAAGCAGATGGCAA+AGG | - | chr3_2:2742200-2742219 | None:intergenic | 45.0% | |
| ! | TTTGCCATCTGCTTGATTCG+TGG | + | chr3_2:2742199-2742218 | Msa0391240:CDS | 45.0% |
| TATGCCACGAATCAAGCAGA+TGG | - | chr3_2:2742206-2742225 | None:intergenic | 45.0% | |
| GCATGGTCGGAGAAATCAAG+GGG | + | chr3_2:2740874-2740893 | Msa0391240:CDS | 50.0% | |
| AAATTCTCGCTCTCAGCACC+CGG | - | chr3_2:2740921-2740940 | None:intergenic | 50.0% | |
| GCCCATTGTCCCTGTTGAAT+AGG | - | chr3_2:2740993-2741012 | None:intergenic | 50.0% | |
| CAAAGCCATGGATAAGCACG+GGG | - | chr3_2:2741301-2741320 | None:intergenic | 50.0% | |
| GCAAAGCCATGGATAAGCAC+GGG | - | chr3_2:2741302-2741321 | None:intergenic | 50.0% | |
| ! | GGACCGTCATATCCTTTTCG+CGG | - | chr3_2:2741671-2741690 | None:intergenic | 50.0% |
| AATGAGACTTGGCTCAGTGC+TGG | - | chr3_2:2741941-2741960 | None:intergenic | 50.0% | |
| GGGATGAGCAACACAATGGT+TGG | + | chr3_2:2741996-2742015 | Msa0391240:CDS | 50.0% | |
| !!! | CTTCATGGGCCGTTTTAGAG+TGG | + | chr3_2:2742027-2742046 | Msa0391240:CDS | 50.0% |
| GCAGATGGCAAAGGCTTGTA+AGG | - | chr3_2:2742191-2742210 | None:intergenic | 50.0% | |
| GCATGGTCGGAGAAATCAAG+GGG | + | chr3_2:2740874-2740893 | Msa0391240:CDS | 50.0% | |
| AAATTCTCGCTCTCAGCACC+CGG | - | chr3_2:2740921-2740940 | None:intergenic | 50.0% | |
| GCCCATTGTCCCTGTTGAAT+AGG | - | chr3_2:2740993-2741012 | None:intergenic | 50.0% | |
| CAAAGCCATGGATAAGCACG+GGG | - | chr3_2:2741301-2741320 | None:intergenic | 50.0% | |
| GCAAAGCCATGGATAAGCAC+GGG | - | chr3_2:2741302-2741321 | None:intergenic | 50.0% | |
| ! | GGACCGTCATATCCTTTTCG+CGG | - | chr3_2:2741671-2741690 | None:intergenic | 50.0% |
| AATGAGACTTGGCTCAGTGC+TGG | - | chr3_2:2741941-2741960 | None:intergenic | 50.0% | |
| GGGATGAGCAACACAATGGT+TGG | + | chr3_2:2741996-2742015 | Msa0391240:CDS | 50.0% | |
| !!! | CTTCATGGGCCGTTTTAGAG+TGG | + | chr3_2:2742027-2742046 | Msa0391240:CDS | 50.0% |
| GCAGATGGCAAAGGCTTGTA+AGG | - | chr3_2:2742191-2742210 | None:intergenic | 50.0% | |
| !! | ACTTGGCTCAGTGCTGGTGA+AGG | - | chr3_2:2741935-2741954 | None:intergenic | 55.0% |
| !! | TGGTTGGGGTGCTGACTTCA+TGG | + | chr3_2:2742012-2742031 | Msa0391240:CDS | 55.0% |
| !! | GGTTGGGGTGCTGACTTCAT+GGG | + | chr3_2:2742013-2742032 | Msa0391240:CDS | 55.0% |
| !! | ACTTGGCTCAGTGCTGGTGA+AGG | - | chr3_2:2741935-2741954 | None:intergenic | 55.0% |
| !! | TGGTTGGGGTGCTGACTTCA+TGG | + | chr3_2:2742012-2742031 | Msa0391240:CDS | 55.0% |
| !! | GGTTGGGGTGCTGACTTCAT+GGG | + | chr3_2:2742013-2742032 | Msa0391240:CDS | 55.0% |
| AAGACGACAGCAGAACGCGC+AGG | - | chr3_2:2741080-2741099 | None:intergenic | 60.0% | |
| CATGGATAAGCACGGGGACC+AGG | - | chr3_2:2741295-2741314 | None:intergenic | 60.0% | |
| CTGGTCCCCGTGCTTATCCA+TGG | + | chr3_2:2741293-2741312 | Msa0391240:CDS | 60.0% | |
| AAGACGACAGCAGAACGCGC+AGG | - | chr3_2:2741080-2741099 | None:intergenic | 60.0% | |
| CATGGATAAGCACGGGGACC+AGG | - | chr3_2:2741295-2741314 | None:intergenic | 60.0% | |
| CTGGTCCCCGTGCTTATCCA+TGG | + | chr3_2:2741293-2741312 | Msa0391240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 2740861 | 2742228 | 2740861 | ID=Msa0391240;Name=Msa0391240 |
| chr3_2 | mRNA | 2740861 | 2742228 | 2740861 | ID=Msa0391240-mRNA-1;Parent=Msa0391240;Name=Msa0391240-mRNA-1;_AED=0.18;_eAED=0.26;_QI=0|0|0|1|1|1|3|0|237 |
| chr3_2 | exon | 2740861 | 2741126 | 2740861 | ID=Msa0391240-mRNA-1:exon:803;Parent=Msa0391240-mRNA-1 |
| chr3_2 | exon | 2741292 | 2741372 | 2741292 | ID=Msa0391240-mRNA-1:exon:804;Parent=Msa0391240-mRNA-1 |
| chr3_2 | exon | 2741862 | 2742228 | 2741862 | ID=Msa0391240-mRNA-1:exon:805;Parent=Msa0391240-mRNA-1 |
| chr3_2 | CDS | 2740861 | 2741126 | 2740861 | ID=Msa0391240-mRNA-1:cds;Parent=Msa0391240-mRNA-1 |
| chr3_2 | CDS | 2741292 | 2741372 | 2741292 | ID=Msa0391240-mRNA-1:cds;Parent=Msa0391240-mRNA-1 |
| chr3_2 | CDS | 2741862 | 2742228 | 2741862 | ID=Msa0391240-mRNA-1:cds;Parent=Msa0391240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
