Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391610 | KEH33239.1 | 85.806 | 155 | 13 | 1 | 1 | 146 | 1 | 155 | 8.09e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391610 | sp|Q9FKI4|NAA10_ARATH | 40.260 | 154 | 69 | 4 | 13 | 143 | 2 | 155 | 2.05e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391610 | A0A072UTR7 | 85.806 | 155 | 13 | 1 | 1 | 146 | 1 | 155 | 3.86e-90 | 268 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0391610 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391610 | MtrunA17_Chr3g0088851 | 82.353 | 102 | 18 | 0 | 8 | 109 | 1 | 102 | 3.01e-59 | 179 |
| Msa0391610 | MtrunA17_Chr3g0090311 | 41.935 | 155 | 67 | 4 | 13 | 144 | 2 | 156 | 4.54e-24 | 92.0 |
| Msa0391610 | MtrunA17_Chr3g0098461 | 34.194 | 155 | 81 | 6 | 8 | 144 | 1 | 152 | 5.58e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391610 | AT5G13780.1 | 40.260 | 154 | 69 | 4 | 13 | 143 | 2 | 155 | 2.08e-21 | 85.5 |
Find 37 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACACAATGTGCCAATATT+TGG | 0.134983 | 3_2:+4021445 | None:intergenic |
| TAACCTGATCCATGGTGTTT+TGG | 0.249453 | 3_2:+4021263 | None:intergenic |
| CACACAATGTGCCAATATTT+GGG | 0.315897 | 3_2:+4021446 | None:intergenic |
| TGTCCCTTGTAACTGTTTCA+TGG | 0.332180 | 3_2:+4021552 | None:intergenic |
| TCATGGTTTGTTTGAAAAGA+TGG | 0.368167 | 3_2:-4020541 | Msa0391610:CDS |
| CTCGTTACTCGCCCAAATAT+TGG | 0.373560 | 3_2:-4021457 | Msa0391610:CDS |
| CTCCTCATCATCAAAATACT+TGG | 0.430558 | 3_2:+4020494 | None:intergenic |
| CGCCCAAAACACCATGGATC+AGG | 0.432622 | 3_2:-4021266 | Msa0391610:intron |
| CATTTAGAGACATATTAGAT+TGG | 0.441170 | 3_2:-4021495 | Msa0391610:CDS |
| CATGGTTTGTTTGAAAAGAT+GGG | 0.461540 | 3_2:-4020540 | Msa0391610:CDS |
| CGTAAACGTCGTATCGCTAC+TGG | 0.467917 | 3_2:-4021301 | Msa0391610:CDS |
| GTTGCTTACGTCCTCTCTGA+AGG | 0.532273 | 3_2:-4021382 | Msa0391610:CDS |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3_2:-4020462 | Msa0391610:CDS |
| AAGAGCAACTCTGCAGCTCA+TGG | 0.556672 | 3_2:-4020558 | Msa0391610:CDS |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3_2:-4020463 | Msa0391610:CDS |
| TCTCTGAAGGTGAAGAGGTA+GGG | 0.563576 | 3_2:-4021369 | Msa0391610:CDS |
| AGGGACAATGTCGTCAAAGA+AGG | 0.566676 | 3_2:-4021536 | Msa0391610:CDS |
| CTAACCATGAAACAGTTACA+AGG | 0.567124 | 3_2:-4021556 | None:intergenic |
| CGTCCTCTCTGAAGGTGAAG+AGG | 0.575179 | 3_2:-4021374 | Msa0391610:CDS |
| AACAAACCTAACCTGATCCA+TGG | 0.579467 | 3_2:+4021255 | None:intergenic |
| CTCTCTGAAGGTGAAGAGGT+AGG | 0.580999 | 3_2:-4021370 | Msa0391610:CDS |
| ATAGGTATGGTGAACGAAGA+GGG | 0.588362 | 3_2:+4021324 | None:intergenic |
| AGAGGGAAGCAATACTAAAG+TGG | 0.593838 | 3_2:+4021341 | None:intergenic |
| GAAGGTGAAGAGGTAGGGAA+TGG | 0.598985 | 3_2:-4021364 | Msa0391610:CDS |
| AGGAGGACGCTATTGTCTTG+AGG | 0.615172 | 3_2:-4020476 | Msa0391610:CDS |
| CACGTTGCGGACGATTGCAG+CGG | 0.618076 | 3_2:-4021412 | Msa0391610:CDS |
| TTACACACTTCATGAGGTGA+AGG | 0.620811 | 3_2:-4020517 | Msa0391610:CDS |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_2:+4020428 | None:intergenic |
| TGAAAAGCTTATTCACGTTG+CGG | 0.636284 | 3_2:-4021425 | Msa0391610:CDS |
| CACCGCCGCCCAAAACACCA+TGG | 0.640323 | 3_2:-4021272 | Msa0391610:CDS |
| TACGACGTTTACGATAGGTA+TGG | 0.651983 | 3_2:+4021311 | None:intergenic |
| GATAGGTATGGTGAACGAAG+AGG | 0.654181 | 3_2:+4021323 | None:intergenic |
| GATGGGTTACACACTTCATG+AGG | 0.658895 | 3_2:-4020523 | Msa0391610:CDS |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3_2:-4020461 | Msa0391610:CDS |
| TAACCATGAAACAGTTACAA+GGG | 0.693247 | 3_2:-4021555 | None:intergenic |
| AGCGATACGACGTTTACGAT+AGG | 0.708023 | 3_2:+4021306 | None:intergenic |
| CTACCTCTTCACCTTCAGAG+AGG | 0.720489 | 3_2:+4021371 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTGTTATAACTTTGTTTTT+TGG | - | chr3_2:4020768-4020787 | Msa0391610:intron | 20.0% |
| !!! | ATAACTTTGTTTTTTGGATT+AGG | - | chr3_2:4020774-4020793 | Msa0391610:intron | 20.0% |
| !! | AAAACCAAAAAGAAAAATCT+CGG | + | chr3_2:4021233-4021252 | None:intergenic | 20.0% |
| !!! | TCTGTTATAACTTTGTTTTT+TGG | - | chr3_2:4020768-4020787 | Msa0391610:intron | 20.0% |
| !!! | ATAACTTTGTTTTTTGGATT+AGG | - | chr3_2:4020774-4020793 | Msa0391610:intron | 20.0% |
| !! | AAAACCAAAAAGAAAAATCT+CGG | + | chr3_2:4021233-4021252 | None:intergenic | 20.0% |
| ! | CATTTAGAGACATATTAGAT+TGG | - | chr3_2:4020498-4020517 | Msa0391610:CDS | 25.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | - | chr3_2:4021149-4021168 | Msa0391610:intron | 25.0% |
| !!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3_2:4021249-4021268 | Msa0391610:intron | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_2:4021329-4021348 | None:intergenic | 25.0% |
| ! | ACATTGTAACAGACTATTAA+TGG | + | chr3_2:4021367-4021386 | None:intergenic | 25.0% |
| ! | CATTTAGAGACATATTAGAT+TGG | - | chr3_2:4020498-4020517 | Msa0391610:CDS | 25.0% |
| !! | TTTCTTCTTGTTAGTGATTT+TGG | - | chr3_2:4021149-4021168 | Msa0391610:intron | 25.0% |
| !!! | TTTTCTTGTTTCCTAATCTT+GGG | - | chr3_2:4021249-4021268 | Msa0391610:intron | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_2:4021329-4021348 | None:intergenic | 25.0% |
| ! | ACATTGTAACAGACTATTAA+TGG | + | chr3_2:4021367-4021386 | None:intergenic | 25.0% |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_2:4020839-4020858 | None:intergenic | 30.0% | |
| ! | TATGTATGGAGTTGGTTTAA+TGG | - | chr3_2:4020849-4020868 | Msa0391610:intron | 30.0% |
| AGAAAACAGAAAATCATCAC+GGG | + | chr3_2:4020977-4020996 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | + | chr3_2:4020978-4020997 | None:intergenic | 30.0% | |
| !! | TTTCTGTAGTTAGTCTTGTA+TGG | - | chr3_2:4021191-4021210 | Msa0391610:intron | 30.0% |
| !! | TTCTGTAGTTAGTCTTGTAT+GGG | - | chr3_2:4021192-4021211 | Msa0391610:intron | 30.0% |
| !! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3_2:4021248-4021267 | Msa0391610:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3_2:4021250-4021269 | Msa0391610:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3_2:4021322-4021341 | Msa0391610:CDS | 30.0% |
| ACAATGTGCAATTTGATTGA+TGG | - | chr3_2:4021380-4021399 | Msa0391610:CDS | 30.0% | |
| !! | TCATGGTTTGTTTGAAAAGA+TGG | - | chr3_2:4021452-4021471 | Msa0391610:CDS | 30.0% |
| !! | CATGGTTTGTTTGAAAAGAT+GGG | - | chr3_2:4021453-4021472 | Msa0391610:CDS | 30.0% |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_2:4020839-4020858 | None:intergenic | 30.0% | |
| ! | TATGTATGGAGTTGGTTTAA+TGG | - | chr3_2:4020849-4020868 | Msa0391610:intron | 30.0% |
| AGAAAACAGAAAATCATCAC+GGG | + | chr3_2:4020977-4020996 | None:intergenic | 30.0% | |
| CAGAAAACAGAAAATCATCA+CGG | + | chr3_2:4020978-4020997 | None:intergenic | 30.0% | |
| !! | TTTCTGTAGTTAGTCTTGTA+TGG | - | chr3_2:4021191-4021210 | Msa0391610:intron | 30.0% |
| !! | TTCTGTAGTTAGTCTTGTAT+GGG | - | chr3_2:4021192-4021211 | Msa0391610:intron | 30.0% |
| !! | GTTTTCTTGTTTCCTAATCT+TGG | - | chr3_2:4021248-4021267 | Msa0391610:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+GGG | - | chr3_2:4021250-4021269 | Msa0391610:intron | 30.0% |
| !!! | CAGACCTTTTTTGATGTTTT+TGG | - | chr3_2:4021322-4021341 | Msa0391610:CDS | 30.0% |
| ACAATGTGCAATTTGATTGA+TGG | - | chr3_2:4021380-4021399 | Msa0391610:CDS | 30.0% | |
| !! | TCATGGTTTGTTTGAAAAGA+TGG | - | chr3_2:4021452-4021471 | Msa0391610:CDS | 30.0% |
| !! | CATGGTTTGTTTGAAAAGAT+GGG | - | chr3_2:4021453-4021472 | Msa0391610:CDS | 30.0% |
| CACACAATGTGCCAATATTT+GGG | + | chr3_2:4020550-4020569 | None:intergenic | 35.0% | |
| TCACACAATGTGCCAATATT+TGG | + | chr3_2:4020551-4020570 | None:intergenic | 35.0% | |
| TGAAAAGCTTATTCACGTTG+CGG | - | chr3_2:4020568-4020587 | Msa0391610:intron | 35.0% | |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_2:4020835-4020854 | Msa0391610:intron | 35.0% |
| TAACTGGTTATGTATGGAGT+TGG | - | chr3_2:4020841-4020860 | Msa0391610:intron | 35.0% | |
| ! | ATGGAGTTGGTTTAATGGTT+AGG | - | chr3_2:4020854-4020873 | Msa0391610:intron | 35.0% |
| TAATGGTTAGGTATGAAGCT+TGG | - | chr3_2:4020866-4020885 | Msa0391610:intron | 35.0% | |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3_2:4020954-4020973 | None:intergenic | 35.0% |
| ! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3_2:4020976-4020995 | Msa0391610:intron | 35.0% |
| CTAGGATTATCTTCTATTCC+TGG | - | chr3_2:4021020-4021039 | Msa0391610:intron | 35.0% | |
| TTATCTTCTATTCCTGGAAG+TGG | - | chr3_2:4021026-4021045 | Msa0391610:intron | 35.0% | |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | - | chr3_2:4021152-4021171 | Msa0391610:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | - | chr3_2:4021156-4021175 | Msa0391610:intron | 35.0% |
| !! | TCTGTAGTTAGTCTTGTATG+GGG | - | chr3_2:4021193-4021212 | Msa0391610:intron | 35.0% |
| ! | TCCTCCGAGATTTTTCTTTT+TGG | - | chr3_2:4021226-4021245 | Msa0391610:intron | 35.0% |
| ACCAAAAAGAAAAATCTCGG+AGG | + | chr3_2:4021230-4021249 | None:intergenic | 35.0% | |
| ATGTGCAATTTGATTGATGG+TGG | - | chr3_2:4021383-4021402 | Msa0391610:CDS | 35.0% | |
| ! | TGTGCAATTTGATTGATGGT+GGG | - | chr3_2:4021384-4021403 | Msa0391610:CDS | 35.0% |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_2:4021502-4021521 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_2:4021500-4021519 | Msa0391610:CDS | 35.0% |
| CACACAATGTGCCAATATTT+GGG | + | chr3_2:4020550-4020569 | None:intergenic | 35.0% | |
| TCACACAATGTGCCAATATT+TGG | + | chr3_2:4020551-4020570 | None:intergenic | 35.0% | |
| TGAAAAGCTTATTCACGTTG+CGG | - | chr3_2:4020568-4020587 | Msa0391610:intron | 35.0% | |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_2:4020835-4020854 | Msa0391610:intron | 35.0% |
| TAACTGGTTATGTATGGAGT+TGG | - | chr3_2:4020841-4020860 | Msa0391610:intron | 35.0% | |
| ! | ATGGAGTTGGTTTAATGGTT+AGG | - | chr3_2:4020854-4020873 | Msa0391610:intron | 35.0% |
| TAATGGTTAGGTATGAAGCT+TGG | - | chr3_2:4020866-4020885 | Msa0391610:intron | 35.0% | |
| ! | TTTTCAGATAGATCACACAG+TGG | + | chr3_2:4020954-4020973 | None:intergenic | 35.0% |
| ! | CGTGATGATTTTCTGTTTTC+TGG | - | chr3_2:4020976-4020995 | Msa0391610:intron | 35.0% |
| CTAGGATTATCTTCTATTCC+TGG | - | chr3_2:4021020-4021039 | Msa0391610:intron | 35.0% | |
| TTATCTTCTATTCCTGGAAG+TGG | - | chr3_2:4021026-4021045 | Msa0391610:intron | 35.0% | |
| ! | CTTCTTGTTAGTGATTTTGG+TGG | - | chr3_2:4021152-4021171 | Msa0391610:intron | 35.0% |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | - | chr3_2:4021156-4021175 | Msa0391610:intron | 35.0% |
| !! | TCTGTAGTTAGTCTTGTATG+GGG | - | chr3_2:4021193-4021212 | Msa0391610:intron | 35.0% |
| ! | TCCTCCGAGATTTTTCTTTT+TGG | - | chr3_2:4021226-4021245 | Msa0391610:intron | 35.0% |
| ACCAAAAAGAAAAATCTCGG+AGG | + | chr3_2:4021230-4021249 | None:intergenic | 35.0% | |
| ATGTGCAATTTGATTGATGG+TGG | - | chr3_2:4021383-4021402 | Msa0391610:CDS | 35.0% | |
| ! | TGTGCAATTTGATTGATGGT+GGG | - | chr3_2:4021384-4021403 | Msa0391610:CDS | 35.0% |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_2:4021502-4021521 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_2:4021500-4021519 | Msa0391610:CDS | 35.0% |
| AGAGGGAAGCAATACTAAAG+TGG | + | chr3_2:4020655-4020674 | None:intergenic | 40.0% | |
| ATAGGTATGGTGAACGAAGA+GGG | + | chr3_2:4020672-4020691 | None:intergenic | 40.0% | |
| TACGACGTTTACGATAGGTA+TGG | + | chr3_2:4020685-4020704 | None:intergenic | 40.0% | |
| ! | AACCTGATCCATGGTGTTTT+GGG | + | chr3_2:4020732-4020751 | None:intergenic | 40.0% |
| ! | TAACCTGATCCATGGTGTTT+TGG | + | chr3_2:4020733-4020752 | None:intergenic | 40.0% |
| AAAACACCATGGATCAGGTT+AGG | - | chr3_2:4020732-4020751 | Msa0391610:intron | 40.0% | |
| AACAAACCTAACCTGATCCA+TGG | + | chr3_2:4020741-4020760 | None:intergenic | 40.0% | |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3_2:4020788-4020807 | Msa0391610:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3_2:4020789-4020808 | Msa0391610:intron | 40.0% |
| ! | TGTGATACAGGCCTTTTAAC+TGG | - | chr3_2:4020825-4020844 | Msa0391610:intron | 40.0% |
| GTTAGGTATGAAGCTTGGTT+CGG | - | chr3_2:4020871-4020890 | Msa0391610:intron | 40.0% | |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | - | chr3_2:4020885-4020904 | Msa0391610:intron | 40.0% |
| GGTAGAATCTGAGTTTCACT+AGG | - | chr3_2:4020997-4021016 | Msa0391610:intron | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | - | chr3_2:4021002-4021021 | Msa0391610:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3_2:4021034-4021053 | Msa0391610:intron | 40.0% | |
| TAAAGGGAGTGGCAATGATT+CGG | + | chr3_2:4021067-4021086 | None:intergenic | 40.0% | |
| TTACACACTTCATGAGGTGA+AGG | - | chr3_2:4021476-4021495 | Msa0391610:CDS | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_2:4021497-4021516 | Msa0391610:CDS | 40.0% |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3_2:4021530-4021549 | Msa0391610:CDS | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3_2:4021531-4021550 | Msa0391610:CDS | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3_2:4021532-4021551 | Msa0391610:CDS | 40.0% | |
| AGAGGGAAGCAATACTAAAG+TGG | + | chr3_2:4020655-4020674 | None:intergenic | 40.0% | |
| ATAGGTATGGTGAACGAAGA+GGG | + | chr3_2:4020672-4020691 | None:intergenic | 40.0% | |
| TACGACGTTTACGATAGGTA+TGG | + | chr3_2:4020685-4020704 | None:intergenic | 40.0% | |
| ! | AACCTGATCCATGGTGTTTT+GGG | + | chr3_2:4020732-4020751 | None:intergenic | 40.0% |
| ! | TAACCTGATCCATGGTGTTT+TGG | + | chr3_2:4020733-4020752 | None:intergenic | 40.0% |
| AAAACACCATGGATCAGGTT+AGG | - | chr3_2:4020732-4020751 | Msa0391610:intron | 40.0% | |
| AACAAACCTAACCTGATCCA+TGG | + | chr3_2:4020741-4020760 | None:intergenic | 40.0% | |
| ! | TGGATTAGGTTTGTCACTTG+TGG | - | chr3_2:4020788-4020807 | Msa0391610:intron | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+GGG | - | chr3_2:4020789-4020808 | Msa0391610:intron | 40.0% |
| ! | TGTGATACAGGCCTTTTAAC+TGG | - | chr3_2:4020825-4020844 | Msa0391610:intron | 40.0% |
| GTTAGGTATGAAGCTTGGTT+CGG | - | chr3_2:4020871-4020890 | Msa0391610:intron | 40.0% | |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | - | chr3_2:4020885-4020904 | Msa0391610:intron | 40.0% |
| GGTAGAATCTGAGTTTCACT+AGG | - | chr3_2:4020997-4021016 | Msa0391610:intron | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | - | chr3_2:4021002-4021021 | Msa0391610:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3_2:4021034-4021053 | Msa0391610:intron | 40.0% | |
| TAAAGGGAGTGGCAATGATT+CGG | + | chr3_2:4021067-4021086 | None:intergenic | 40.0% | |
| TTACACACTTCATGAGGTGA+AGG | - | chr3_2:4021476-4021495 | Msa0391610:CDS | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_2:4021497-4021516 | Msa0391610:CDS | 40.0% |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3_2:4021530-4021549 | Msa0391610:CDS | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3_2:4021531-4021550 | Msa0391610:CDS | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3_2:4021532-4021551 | Msa0391610:CDS | 40.0% | |
| AGGGACAATGTCGTCAAAGA+AGG | - | chr3_2:4020457-4020476 | Msa0391610:CDS | 45.0% | |
| CTCGTTACTCGCCCAAATAT+TGG | - | chr3_2:4020536-4020555 | Msa0391610:CDS | 45.0% | |
| ! | TCTCTGAAGGTGAAGAGGTA+GGG | - | chr3_2:4020624-4020643 | Msa0391610:intron | 45.0% |
| GATAGGTATGGTGAACGAAG+AGG | + | chr3_2:4020673-4020692 | None:intergenic | 45.0% | |
| AGCGATACGACGTTTACGAT+AGG | + | chr3_2:4020690-4020709 | None:intergenic | 45.0% | |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_2:4020801-4020820 | Msa0391610:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_2:4020802-4020821 | Msa0391610:intron | 45.0% |
| TAGCGTATAGGGTGTGATAC+AGG | - | chr3_2:4020813-4020832 | Msa0391610:intron | 45.0% | |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | - | chr3_2:4020884-4020903 | Msa0391610:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | - | chr3_2:4020886-4020905 | Msa0391610:intron | 45.0% |
| TTGTTTCGTTAGGGGTGGTA+AGG | - | chr3_2:4020894-4020913 | Msa0391610:intron | 45.0% | |
| AAAGGGAGTGGCAATGATTC+GGG | + | chr3_2:4021066-4021085 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_2:4021071-4021090 | Msa0391610:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_2:4021072-4021091 | Msa0391610:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | + | chr3_2:4021083-4021102 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3_2:4021095-4021114 | Msa0391610:intron | 45.0% | |
| AACACTTCCCCACAGAGAAT+TGG | + | chr3_2:4021106-4021125 | None:intergenic | 45.0% | |
| !!! | TCTCTGTGGGGAAGTGTTTT+TGG | - | chr3_2:4021108-4021127 | Msa0391610:intron | 45.0% |
| TGTTTCCTAATCTTGGGGTG+CGG | - | chr3_2:4021255-4021274 | Msa0391610:intron | 45.0% | |
| !! | GATGGGTTACACACTTCATG+AGG | - | chr3_2:4021470-4021489 | Msa0391610:CDS | 45.0% |
| AGGGACAATGTCGTCAAAGA+AGG | - | chr3_2:4020457-4020476 | Msa0391610:CDS | 45.0% | |
| CTCGTTACTCGCCCAAATAT+TGG | - | chr3_2:4020536-4020555 | Msa0391610:CDS | 45.0% | |
| ! | TCTCTGAAGGTGAAGAGGTA+GGG | - | chr3_2:4020624-4020643 | Msa0391610:intron | 45.0% |
| GATAGGTATGGTGAACGAAG+AGG | + | chr3_2:4020673-4020692 | None:intergenic | 45.0% | |
| AGCGATACGACGTTTACGAT+AGG | + | chr3_2:4020690-4020709 | None:intergenic | 45.0% | |
| !! | TCACTTGTGGGTTAGCGTAT+AGG | - | chr3_2:4020801-4020820 | Msa0391610:intron | 45.0% |
| !! | CACTTGTGGGTTAGCGTATA+GGG | - | chr3_2:4020802-4020821 | Msa0391610:intron | 45.0% |
| TAGCGTATAGGGTGTGATAC+AGG | - | chr3_2:4020813-4020832 | Msa0391610:intron | 45.0% | |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | - | chr3_2:4020884-4020903 | Msa0391610:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | - | chr3_2:4020886-4020905 | Msa0391610:intron | 45.0% |
| TTGTTTCGTTAGGGGTGGTA+AGG | - | chr3_2:4020894-4020913 | Msa0391610:intron | 45.0% | |
| AAAGGGAGTGGCAATGATTC+GGG | + | chr3_2:4021066-4021085 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_2:4021071-4021090 | Msa0391610:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_2:4021072-4021091 | Msa0391610:intron | 45.0% | |
| TTTCGCCTCCCACTCATAAA+GGG | + | chr3_2:4021083-4021102 | None:intergenic | 45.0% | |
| AGGCGAAACCAATTCTCTGT+GGG | - | chr3_2:4021095-4021114 | Msa0391610:intron | 45.0% | |
| AACACTTCCCCACAGAGAAT+TGG | + | chr3_2:4021106-4021125 | None:intergenic | 45.0% | |
| !!! | TCTCTGTGGGGAAGTGTTTT+TGG | - | chr3_2:4021108-4021127 | Msa0391610:intron | 45.0% |
| TGTTTCCTAATCTTGGGGTG+CGG | - | chr3_2:4021255-4021274 | Msa0391610:intron | 45.0% | |
| !! | GATGGGTTACACACTTCATG+AGG | - | chr3_2:4021470-4021489 | Msa0391610:CDS | 45.0% |
| GTTGCTTACGTCCTCTCTGA+AGG | - | chr3_2:4020611-4020630 | Msa0391610:intron | 50.0% | |
| CTACCTCTTCACCTTCAGAG+AGG | + | chr3_2:4020625-4020644 | None:intergenic | 50.0% | |
| ! | CTCTCTGAAGGTGAAGAGGT+AGG | - | chr3_2:4020623-4020642 | Msa0391610:intron | 50.0% |
| GAAGGTGAAGAGGTAGGGAA+TGG | - | chr3_2:4020629-4020648 | Msa0391610:intron | 50.0% | |
| CGTAAACGTCGTATCGCTAC+TGG | - | chr3_2:4020692-4020711 | Msa0391610:intron | 50.0% | |
| !! | CTGATCCATGGTGTTTTGGG+CGG | + | chr3_2:4020729-4020748 | None:intergenic | 50.0% |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | - | chr3_2:4020889-4020908 | Msa0391610:intron | 50.0% |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3_2:4021041-4021060 | None:intergenic | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | + | chr3_2:4021084-4021103 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3_2:4021094-4021113 | Msa0391610:intron | 50.0% | |
| GGCGAAACCAATTCTCTGTG+GGG | - | chr3_2:4021096-4021115 | Msa0391610:intron | 50.0% | |
| !! | GTCTTGTATGGGGAGTGTTC+TGG | - | chr3_2:4021203-4021222 | Msa0391610:intron | 50.0% |
| GTTTCCTAATCTTGGGGTGC+GGG | - | chr3_2:4021256-4021275 | Msa0391610:intron | 50.0% | |
| AAAACCCGCACCCCAAGATT+AGG | + | chr3_2:4021263-4021282 | None:intergenic | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | + | chr3_2:4021302-4021321 | None:intergenic | 50.0% | |
| AAGGTCTGTACAACAGCTGC+AGG | + | chr3_2:4021310-4021329 | None:intergenic | 50.0% | |
| AAGATGTCTCAGTGCACGTC+CGG | - | chr3_2:4021412-4021431 | Msa0391610:CDS | 50.0% | |
| AAGAGCAACTCTGCAGCTCA+TGG | - | chr3_2:4021435-4021454 | Msa0391610:CDS | 50.0% | |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3_2:4021517-4021536 | Msa0391610:CDS | 50.0% | |
| GTTGCTTACGTCCTCTCTGA+AGG | - | chr3_2:4020611-4020630 | Msa0391610:intron | 50.0% | |
| CTACCTCTTCACCTTCAGAG+AGG | + | chr3_2:4020625-4020644 | None:intergenic | 50.0% | |
| ! | CTCTCTGAAGGTGAAGAGGT+AGG | - | chr3_2:4020623-4020642 | Msa0391610:intron | 50.0% |
| GAAGGTGAAGAGGTAGGGAA+TGG | - | chr3_2:4020629-4020648 | Msa0391610:intron | 50.0% | |
| CGTAAACGTCGTATCGCTAC+TGG | - | chr3_2:4020692-4020711 | Msa0391610:intron | 50.0% | |
| !! | CTGATCCATGGTGTTTTGGG+CGG | + | chr3_2:4020729-4020748 | None:intergenic | 50.0% |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | - | chr3_2:4020889-4020908 | Msa0391610:intron | 50.0% |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3_2:4021041-4021060 | None:intergenic | 50.0% | |
| GTTTCGCCTCCCACTCATAA+AGG | + | chr3_2:4021084-4021103 | None:intergenic | 50.0% | |
| GAGGCGAAACCAATTCTCTG+TGG | - | chr3_2:4021094-4021113 | Msa0391610:intron | 50.0% | |
| GGCGAAACCAATTCTCTGTG+GGG | - | chr3_2:4021096-4021115 | Msa0391610:intron | 50.0% | |
| !! | GTCTTGTATGGGGAGTGTTC+TGG | - | chr3_2:4021203-4021222 | Msa0391610:intron | 50.0% |
| GTTTCCTAATCTTGGGGTGC+GGG | - | chr3_2:4021256-4021275 | Msa0391610:intron | 50.0% | |
| AAAACCCGCACCCCAAGATT+AGG | + | chr3_2:4021263-4021282 | None:intergenic | 50.0% | |
| TACAACAGCTGCAGGTCTCA+AGG | + | chr3_2:4021302-4021321 | None:intergenic | 50.0% | |
| AAGGTCTGTACAACAGCTGC+AGG | + | chr3_2:4021310-4021329 | None:intergenic | 50.0% | |
| AAGATGTCTCAGTGCACGTC+CGG | - | chr3_2:4021412-4021431 | Msa0391610:CDS | 50.0% | |
| AAGAGCAACTCTGCAGCTCA+TGG | - | chr3_2:4021435-4021454 | Msa0391610:CDS | 50.0% | |
| AGGAGGACGCTATTGTCTTG+AGG | - | chr3_2:4021517-4021536 | Msa0391610:CDS | 50.0% | |
| ! | CGTCCTCTCTGAAGGTGAAG+AGG | - | chr3_2:4020619-4020638 | Msa0391610:intron | 55.0% |
| !! | ATCCATGGTGTTTTGGGCGG+CGG | + | chr3_2:4020726-4020745 | None:intergenic | 55.0% |
| CGCCCAAAACACCATGGATC+AGG | - | chr3_2:4020727-4020746 | Msa0391610:intron | 55.0% | |
| TAGGGGTGGTAAGGCAGAGA+AGG | - | chr3_2:4020903-4020922 | Msa0391610:intron | 55.0% | |
| GTGGTAAGGCAGAGAAGGCT+AGG | - | chr3_2:4020908-4020927 | Msa0391610:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_2:4021078-4021097 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_2:4021075-4021094 | Msa0391610:intron | 55.0% | |
| ! | TTGGGGTGCGGGTTTTCACT+AGG | - | chr3_2:4021267-4021286 | Msa0391610:CDS | 55.0% |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_2:4021434-4021453 | None:intergenic | 55.0% | |
| ! | CGTCCTCTCTGAAGGTGAAG+AGG | - | chr3_2:4020619-4020638 | Msa0391610:intron | 55.0% |
| !! | ATCCATGGTGTTTTGGGCGG+CGG | + | chr3_2:4020726-4020745 | None:intergenic | 55.0% |
| CGCCCAAAACACCATGGATC+AGG | - | chr3_2:4020727-4020746 | Msa0391610:intron | 55.0% | |
| TAGGGGTGGTAAGGCAGAGA+AGG | - | chr3_2:4020903-4020922 | Msa0391610:intron | 55.0% | |
| GTGGTAAGGCAGAGAAGGCT+AGG | - | chr3_2:4020908-4020927 | Msa0391610:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_2:4021078-4021097 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_2:4021075-4021094 | Msa0391610:intron | 55.0% | |
| ! | TTGGGGTGCGGGTTTTCACT+AGG | - | chr3_2:4021267-4021286 | Msa0391610:CDS | 55.0% |
| GAGCTGCAGAGTTGCTCTTC+CGG | + | chr3_2:4021434-4021453 | None:intergenic | 55.0% | |
| CACGTTGCGGACGATTGCAG+CGG | - | chr3_2:4020581-4020600 | Msa0391610:intron | 60.0% | |
| CACGTTGCGGACGATTGCAG+CGG | - | chr3_2:4020581-4020600 | Msa0391610:intron | 60.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3_2:4020721-4020740 | Msa0391610:intron | 65.0% | |
| CACCGCCGCCCAAAACACCA+TGG | - | chr3_2:4020721-4020740 | Msa0391610:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 4020443 | 4021572 | 4020443 | ID=Msa0391610;Name=Msa0391610 |
| chr3_2 | mRNA | 4020443 | 4021572 | 4020443 | ID=Msa0391610-mRNA-1;Parent=Msa0391610;Name=Msa0391610-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|146 |
| chr3_2 | exon | 4021267 | 4021572 | 4021267 | ID=Msa0391610-mRNA-1:exon:1028;Parent=Msa0391610-mRNA-1 |
| chr3_2 | exon | 4020443 | 4020577 | 4020443 | ID=Msa0391610-mRNA-1:exon:1027;Parent=Msa0391610-mRNA-1 |
| chr3_2 | CDS | 4021267 | 4021572 | 4021267 | ID=Msa0391610-mRNA-1:cds;Parent=Msa0391610-mRNA-1 |
| chr3_2 | CDS | 4020443 | 4020577 | 4020443 | ID=Msa0391610-mRNA-1:cds;Parent=Msa0391610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
