Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392240 | XP_003598025.2 | 77.438 | 523 | 115 | 2 | 1 | 522 | 20 | 540 | 0.0 | 823 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392240 | sp|Q8L3W1|VRN1_ARATH | 27.761 | 335 | 159 | 7 | 271 | 522 | 6 | 340 | 8.74e-29 | 120 |
Msa0392240 | sp|Q8L3W1|VRN1_ARATH | 38.384 | 99 | 61 | 0 | 23 | 121 | 6 | 104 | 1.97e-17 | 87.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392240 | G7IYE4 | 77.438 | 523 | 115 | 2 | 1 | 522 | 20 | 540 | 0.0 | 823 |
Gene ID | Type | Classification |
---|---|---|
Msa0392240 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392240 | MtrunA17_Chr4g0009491 | 83.258 | 442 | 54 | 1 | 37 | 478 | 11 | 432 | 0.0 | 749 |
Msa0392240 | MtrunA17_Chr4g0009491 | 53.171 | 205 | 74 | 1 | 18 | 200 | 220 | 424 | 4.05e-65 | 218 |
Msa0392240 | MtrunA17_Chr4g0009491 | 52.113 | 213 | 80 | 1 | 285 | 497 | 11 | 201 | 5.84e-64 | 214 |
Msa0392240 | MtrunA17_Chr3g0077361 | 71.319 | 523 | 112 | 3 | 1 | 522 | 20 | 505 | 0.0 | 742 |
Msa0392240 | MtrunA17_Chr3g0077381 | 80.587 | 443 | 56 | 3 | 37 | 478 | 34 | 447 | 0.0 | 709 |
Msa0392240 | MtrunA17_Chr3g0077381 | 49.590 | 244 | 77 | 4 | 285 | 526 | 34 | 233 | 4.83e-61 | 207 |
Msa0392240 | MtrunA17_Chr3g0077381 | 51.707 | 205 | 70 | 2 | 18 | 200 | 242 | 439 | 4.91e-59 | 202 |
Msa0392240 | MtrunA17_Chr3g0077411 | 63.534 | 532 | 173 | 5 | 1 | 522 | 1 | 521 | 0.0 | 645 |
Msa0392240 | MtrunA17_Chr3g0077461 | 57.796 | 481 | 166 | 8 | 38 | 516 | 22 | 467 | 0.0 | 520 |
Msa0392240 | MtrunA17_Chr3g0077461 | 49.167 | 240 | 110 | 5 | 18 | 248 | 232 | 468 | 3.52e-61 | 208 |
Msa0392240 | MtrunA17_Chr3g0077451 | 65.833 | 240 | 71 | 2 | 285 | 523 | 10 | 239 | 1.14e-108 | 323 |
Msa0392240 | MtrunA17_Chr3g0077451 | 57.078 | 219 | 81 | 2 | 37 | 242 | 10 | 228 | 3.98e-74 | 235 |
Msa0392240 | MtrunA17_Chr5g0429931 | 65.401 | 237 | 82 | 0 | 286 | 522 | 10 | 246 | 4.69e-105 | 315 |
Msa0392240 | MtrunA17_Chr5g0429931 | 56.388 | 227 | 77 | 1 | 38 | 242 | 10 | 236 | 4.36e-77 | 243 |
Msa0392240 | MtrunA17_Chr3g0077431 | 63.810 | 210 | 65 | 2 | 315 | 523 | 1 | 200 | 1.99e-89 | 273 |
Msa0392240 | MtrunA17_Chr3g0077431 | 53.968 | 189 | 74 | 2 | 67 | 242 | 1 | 189 | 1.15e-56 | 188 |
Msa0392240 | MtrunA17_Chr3g0077421 | 62.381 | 210 | 67 | 2 | 315 | 522 | 1 | 200 | 6.26e-86 | 264 |
Msa0392240 | MtrunA17_Chr3g0077421 | 53.684 | 190 | 74 | 2 | 67 | 242 | 1 | 190 | 3.59e-54 | 181 |
Msa0392240 | MtrunA17_Chr3g0077441 | 62.381 | 210 | 67 | 2 | 315 | 522 | 1 | 200 | 6.26e-86 | 264 |
Msa0392240 | MtrunA17_Chr3g0077441 | 53.684 | 190 | 74 | 2 | 67 | 242 | 1 | 190 | 3.59e-54 | 181 |
Msa0392240 | MtrunA17_Chr3g0131891 | 29.553 | 291 | 164 | 6 | 270 | 521 | 18 | 306 | 1.83e-28 | 115 |
Msa0392240 | MtrunA17_Chr3g0131891 | 27.240 | 279 | 144 | 7 | 16 | 235 | 12 | 290 | 6.65e-20 | 90.9 |
Msa0392240 | MtrunA17_Chr7g0233561 | 27.974 | 311 | 175 | 7 | 263 | 524 | 8 | 318 | 1.56e-26 | 110 |
Msa0392240 | MtrunA17_Chr7g0233561 | 30.286 | 175 | 116 | 3 | 22 | 194 | 17 | 187 | 3.10e-18 | 85.9 |
Msa0392240 | MtrunA17_Chr8g0390841 | 29.293 | 297 | 157 | 9 | 271 | 518 | 39 | 331 | 1.91e-26 | 112 |
Msa0392240 | MtrunA17_Chr8g0390841 | 32.323 | 99 | 67 | 0 | 23 | 121 | 39 | 137 | 8.62e-14 | 73.9 |
Msa0392240 | MtrunA17_Chr1g0162441 | 46.465 | 99 | 53 | 0 | 271 | 369 | 7 | 105 | 2.00e-26 | 111 |
Msa0392240 | MtrunA17_Chr1g0162441 | 40.404 | 99 | 59 | 0 | 23 | 121 | 7 | 105 | 6.03e-21 | 95.5 |
Msa0392240 | MtrunA17_Chr3g0103181 | 29.749 | 279 | 155 | 8 | 270 | 517 | 11 | 279 | 1.56e-25 | 106 |
Msa0392240 | MtrunA17_Chr3g0103181 | 27.881 | 269 | 139 | 8 | 22 | 241 | 11 | 273 | 2.78e-20 | 91.3 |
Msa0392240 | MtrunA17_Chr3g0103171 | 28.358 | 268 | 149 | 6 | 286 | 517 | 5 | 265 | 2.05e-24 | 102 |
Msa0392240 | MtrunA17_Chr3g0103171 | 26.953 | 256 | 134 | 6 | 38 | 241 | 5 | 259 | 9.54e-19 | 86.3 |
Msa0392240 | MtrunA17_Chr7g0233521 | 29.057 | 265 | 158 | 4 | 287 | 521 | 2 | 266 | 7.21e-23 | 98.6 |
Msa0392240 | MtrunA17_Chr7g0233521 | 34.884 | 86 | 56 | 0 | 39 | 124 | 2 | 87 | 2.51e-15 | 76.6 |
Msa0392240 | MtrunA17_Chr1g0208771 | 28.283 | 297 | 148 | 11 | 286 | 527 | 12 | 298 | 8.42e-23 | 101 |
Msa0392240 | MtrunA17_Chr1g0208771 | 33.333 | 84 | 56 | 0 | 38 | 121 | 12 | 95 | 5.92e-12 | 67.8 |
Msa0392240 | MtrunA17_Chr4g0033961 | 42.157 | 102 | 59 | 0 | 268 | 369 | 3 | 104 | 3.47e-22 | 99.0 |
Msa0392240 | MtrunA17_Chr4g0033961 | 34.513 | 113 | 65 | 1 | 9 | 121 | 1 | 104 | 6.20e-16 | 80.1 |
Msa0392240 | MtrunA17_Chr7g0233531 | 27.372 | 274 | 151 | 7 | 287 | 521 | 2 | 266 | 5.98e-22 | 95.9 |
Msa0392240 | MtrunA17_Chr7g0233531 | 28.689 | 122 | 80 | 2 | 39 | 157 | 2 | 119 | 1.32e-14 | 74.3 |
Msa0392240 | MtrunA17_Chr1g0162411 | 40.777 | 103 | 61 | 0 | 271 | 373 | 7 | 109 | 1.25e-20 | 94.7 |
Msa0392240 | MtrunA17_Chr1g0162411 | 33.613 | 119 | 68 | 1 | 23 | 141 | 7 | 114 | 3.19e-15 | 78.2 |
Msa0392240 | MtrunA17_Chr1g0163071 | 28.231 | 294 | 141 | 8 | 287 | 518 | 2 | 287 | 1.37e-20 | 92.4 |
Msa0392240 | MtrunA17_Chr1g0163071 | 37.647 | 85 | 53 | 0 | 39 | 123 | 2 | 86 | 6.24e-14 | 72.8 |
Msa0392240 | MtrunA17_Chr7g0233541 | 27.586 | 290 | 147 | 10 | 287 | 521 | 2 | 283 | 7.16e-20 | 90.1 |
Msa0392240 | MtrunA17_Chr7g0233541 | 31.250 | 112 | 72 | 1 | 39 | 145 | 2 | 113 | 1.81e-15 | 77.4 |
Msa0392240 | MtrunA17_Chr5g0419201 | 34.579 | 107 | 70 | 0 | 263 | 369 | 8 | 114 | 1.06e-19 | 87.0 |
Msa0392240 | MtrunA17_Chr5g0419201 | 35.354 | 99 | 64 | 0 | 23 | 121 | 16 | 114 | 3.23e-17 | 80.1 |
Msa0392240 | MtrunA17_Chr4g0067431 | 28.328 | 293 | 157 | 8 | 270 | 511 | 14 | 304 | 4.31e-19 | 88.6 |
Msa0392240 | MtrunA17_Chr5g0421921 | 39.640 | 111 | 66 | 1 | 412 | 522 | 3 | 112 | 5.38e-19 | 82.8 |
Msa0392240 | MtrunA17_Chr5g0421731 | 39.640 | 111 | 66 | 1 | 412 | 522 | 3 | 112 | 5.38e-19 | 82.8 |
Msa0392240 | MtrunA17_Chr5g0421851 | 36.306 | 157 | 80 | 4 | 385 | 522 | 32 | 187 | 6.22e-19 | 85.1 |
Msa0392240 | MtrunA17_Chr7g0233571 | 34.400 | 125 | 82 | 0 | 270 | 394 | 9 | 133 | 1.32e-18 | 84.7 |
Msa0392240 | MtrunA17_Chr7g0233571 | 34.653 | 101 | 66 | 0 | 22 | 122 | 9 | 109 | 9.48e-17 | 79.3 |
Msa0392240 | MtrunA17_Chr3g0103151 | 36.923 | 130 | 69 | 2 | 270 | 399 | 11 | 127 | 4.65e-18 | 81.6 |
Msa0392240 | MtrunA17_Chr3g0103151 | 37.000 | 100 | 61 | 1 | 22 | 121 | 11 | 108 | 4.08e-15 | 73.2 |
Msa0392240 | MtrunA17_Chr1g0163221 | 26.667 | 285 | 168 | 10 | 270 | 517 | 10 | 290 | 7.38e-18 | 85.1 |
Msa0392240 | MtrunA17_Chr1g0163221 | 23.129 | 294 | 156 | 9 | 15 | 246 | 3 | 288 | 2.00e-11 | 65.9 |
Msa0392240 | MtrunA17_Chr1g0154161 | 24.199 | 281 | 177 | 7 | 270 | 517 | 29 | 306 | 3.46e-17 | 82.8 |
Msa0392240 | MtrunA17_Chr1g0162421 | 45.161 | 62 | 34 | 0 | 281 | 342 | 3 | 64 | 2.88e-16 | 73.2 |
Msa0392240 | MtrunA17_Chr1g0163131 | 24.579 | 297 | 164 | 9 | 270 | 515 | 17 | 304 | 4.14e-16 | 79.3 |
Msa0392240 | MtrunA17_Chr1g0163251 | 26.471 | 272 | 166 | 9 | 280 | 520 | 14 | 282 | 4.65e-16 | 80.1 |
Msa0392240 | MtrunA17_Chr3g0103191 | 40.404 | 99 | 57 | 1 | 271 | 369 | 12 | 108 | 7.18e-15 | 74.7 |
Msa0392240 | MtrunA17_Chr3g0103191 | 38.384 | 99 | 59 | 1 | 23 | 121 | 12 | 108 | 1.03e-14 | 74.3 |
Msa0392240 | MtrunA17_Chr6g0467351 | 32.857 | 140 | 90 | 2 | 270 | 405 | 14 | 153 | 2.02e-14 | 72.8 |
Msa0392240 | MtrunA17_Chr3g0103201 | 27.650 | 217 | 127 | 6 | 330 | 517 | 5 | 220 | 1.13e-13 | 70.5 |
Msa0392240 | MtrunA17_Chr1g0163101 | 29.921 | 127 | 86 | 2 | 265 | 391 | 11 | 134 | 3.88e-13 | 68.2 |
Msa0392240 | MtrunA17_Chr1g0163061 | 35.577 | 104 | 66 | 1 | 270 | 372 | 14 | 117 | 1.89e-12 | 67.8 |
Msa0392240 | MtrunA17_Chr1g0171611 | 24.254 | 268 | 180 | 7 | 269 | 519 | 7 | 268 | 3.55e-11 | 64.3 |
Msa0392240 | MtrunA17_Chr1g0154041 | 30.928 | 97 | 66 | 1 | 270 | 366 | 15 | 110 | 3.71e-11 | 65.9 |
Msa0392240 | MtrunA17_Chr6g0476181 | 36.082 | 97 | 59 | 2 | 287 | 383 | 2 | 95 | 7.30e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392240 | AT3G18990.1 | 27.761 | 335 | 159 | 7 | 271 | 522 | 6 | 340 | 8.89e-30 | 120 |
Msa0392240 | AT3G18990.1 | 38.384 | 99 | 61 | 0 | 23 | 121 | 6 | 104 | 2.00e-18 | 87.0 |
Msa0392240 | AT3G18990.2 | 27.844 | 334 | 158 | 7 | 271 | 521 | 6 | 339 | 2.95e-29 | 119 |
Msa0392240 | AT3G18990.2 | 38.384 | 99 | 61 | 0 | 23 | 121 | 6 | 104 | 3.16e-18 | 87.0 |
Msa0392240 | AT3G18960.2 | 37.121 | 132 | 80 | 1 | 240 | 371 | 2 | 130 | 4.32e-19 | 85.9 |
Msa0392240 | AT3G18960.2 | 35.185 | 108 | 70 | 0 | 16 | 123 | 23 | 130 | 2.05e-16 | 78.2 |
Msa0392240 | AT3G18960.1 | 36.296 | 135 | 83 | 1 | 240 | 374 | 2 | 133 | 7.22e-19 | 85.9 |
Msa0392240 | AT3G18960.1 | 35.185 | 108 | 70 | 0 | 16 | 123 | 23 | 130 | 4.76e-16 | 77.4 |
Msa0392240 | AT4G01580.1 | 34.815 | 135 | 85 | 1 | 240 | 374 | 2 | 133 | 9.85e-19 | 84.7 |
Msa0392240 | AT4G01580.1 | 29.412 | 153 | 95 | 2 | 3 | 155 | 15 | 154 | 3.57e-17 | 80.1 |
Msa0392240 | AT1G49475.1 | 41.441 | 111 | 64 | 1 | 269 | 379 | 32 | 141 | 2.01e-18 | 84.0 |
Msa0392240 | AT1G49475.1 | 33.813 | 139 | 81 | 2 | 4 | 132 | 5 | 142 | 1.52e-16 | 78.6 |
Msa0392240 | AT1G26680.5 | 21.676 | 549 | 346 | 20 | 22 | 516 | 14 | 532 | 6.82e-17 | 84.7 |
Msa0392240 | AT1G26680.6 | 21.676 | 549 | 346 | 20 | 22 | 516 | 14 | 532 | 8.39e-17 | 84.3 |
Msa0392240 | AT2G24645.1 | 21.832 | 513 | 347 | 17 | 20 | 513 | 3 | 480 | 6.65e-15 | 77.8 |
Msa0392240 | AT2G24645.3 | 21.333 | 450 | 313 | 13 | 78 | 513 | 66 | 488 | 2.62e-14 | 75.9 |
Msa0392240 | AT2G24645.4 | 21.711 | 456 | 304 | 15 | 78 | 513 | 44 | 466 | 3.85e-14 | 75.1 |
Msa0392240 | AT1G26680.4 | 20.887 | 541 | 349 | 19 | 22 | 511 | 14 | 526 | 6.62e-14 | 75.5 |
Msa0392240 | AT3G18960.3 | 38.462 | 91 | 56 | 0 | 284 | 374 | 6 | 96 | 8.29e-14 | 70.1 |
Msa0392240 | AT3G18960.3 | 35.227 | 88 | 57 | 0 | 36 | 123 | 6 | 93 | 2.59e-12 | 65.9 |
Msa0392240 | AT1G26680.1 | 20.887 | 541 | 349 | 19 | 22 | 511 | 14 | 526 | 9.64e-14 | 74.7 |
Msa0392240 | AT1G26680.3 | 20.652 | 552 | 359 | 22 | 22 | 516 | 14 | 543 | 8.32e-13 | 71.6 |
Msa0392240 | AT1G26680.2 | 20.935 | 492 | 320 | 19 | 78 | 516 | 55 | 530 | 1.09e-11 | 68.2 |
Msa0392240 | AT1G49480.3 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.51e-11 | 63.5 |
Msa0392240 | AT1G49480.3 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.49e-11 | 63.5 |
Msa0392240 | AT1G49480.1 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.51e-11 | 63.5 |
Msa0392240 | AT1G49480.1 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.49e-11 | 63.5 |
Msa0392240 | AT1G49480.2 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.51e-11 | 63.5 |
Msa0392240 | AT1G49480.2 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.49e-11 | 63.5 |
Find 84 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGCTTTCCTTGAGAATTT+TGG | 0.134641 | 3_2:-5218115 | None:intergenic |
GGCAGCACAATTCACTCTTT+TGG | 0.221967 | 3_2:-5216592 | None:intergenic |
ACTGCTTTCCTTGAGAGTTT+TGG | 0.223060 | 3_2:-5216828 | None:intergenic |
GATGAGTTTATAACAAGATT+TGG | 0.242784 | 3_2:+5217520 | Msa0392240:CDS |
TTGTTGTCCTTTACAAATTT+CGG | 0.251174 | 3_2:-5218200 | None:intergenic |
GATGAGTTTATAAATAGATT+TGG | 0.270080 | 3_2:+5216291 | Msa0392240:CDS |
AAATACTATTCGTTAGGATA+TGG | 0.294914 | 3_2:+5217658 | Msa0392240:CDS |
TACTATCTCTTTGTCTTGAA+TGG | 0.298245 | 3_2:-5217231 | None:intergenic |
TATGGCTTTCATAAAATGTT+TGG | 0.299040 | 3_2:-5215523 | None:intergenic |
TTCAAAACTCCAAGTACTAA+TGG | 0.347246 | 3_2:+5216537 | Msa0392240:CDS |
CTTTGATCTCCATTAGTACT+TGG | 0.349576 | 3_2:-5216546 | None:intergenic |
ATTTGCATTGAGAATGATTT+GGG | 0.350230 | 3_2:-5218164 | None:intergenic |
ATGAGTTTATAAATAGATTT+GGG | 0.360502 | 3_2:+5216292 | Msa0392240:CDS |
ATGAGTTTATAACAAGATTT+GGG | 0.367534 | 3_2:+5217521 | Msa0392240:CDS |
TGGAGTGCGATTGGAACATT+TGG | 0.367737 | 3_2:-5218095 | None:intergenic |
TTGAATGGGCGAGGGAAGTA+TGG | 0.375377 | 3_2:-5217216 | None:intergenic |
CTACTCCTATGAAAAGTTCC+AGG | 0.375640 | 3_2:+5217809 | Msa0392240:CDS |
TATTTGCATTGAGAATGATT+TGG | 0.397480 | 3_2:-5218165 | None:intergenic |
AATCTATTTATAAACTCATC+TGG | 0.412994 | 3_2:-5216288 | None:intergenic |
AATCTTGTTATAAACTCATC+TGG | 0.413404 | 3_2:-5217517 | None:intergenic |
ATGATCTGGAGGAGGAAGTA+TGG | 0.415345 | 3_2:-5215541 | None:intergenic |
GCGACGGAACACATCTTTGC+CGG | 0.419956 | 3_2:-5215476 | None:intergenic |
ATTCTGTAGTACGTTCCTTC+TGG | 0.420347 | 3_2:+5216763 | Msa0392240:intron |
TTTGCAAAATACTATTCGTT+AGG | 0.426106 | 3_2:+5217652 | Msa0392240:CDS |
ACTATCTCTTTGTCTTGAAT+GGG | 0.432252 | 3_2:-5217230 | None:intergenic |
CAATGACAGAAAACGAAGTA+AGG | 0.437201 | 3_2:+5217171 | Msa0392240:CDS |
CTCTTTGTCTTGAATGGGCG+AGG | 0.444494 | 3_2:-5217225 | None:intergenic |
AAGGGAAAACAATCTATTAG+AGG | 0.448831 | 3_2:+5216924 | Msa0392240:CDS |
TGATGGTCGTGAATGGGAAA+TGG | 0.450553 | 3_2:+5216350 | Msa0392240:CDS |
AATGGAGATCAAAGCATAAA+GGG | 0.451246 | 3_2:+5216555 | Msa0392240:CDS |
TTCTCAATGCAAATAACAAT+GGG | 0.452154 | 3_2:+5218173 | Msa0392240:CDS |
TAATGGAGATCAAAGCATAA+AGG | 0.452714 | 3_2:+5216554 | Msa0392240:CDS |
TTGGAATCTTTCTCCGGTGC+CGG | 0.453652 | 3_2:-5215504 | None:intergenic |
CTGTTCCTGATGGTCGTGAT+TGG | 0.457555 | 3_2:+5217572 | Msa0392240:CDS |
AAATGTTTGGAATCTTTCTC+CGG | 0.458549 | 3_2:-5215510 | None:intergenic |
TATTGTATTTCGAATACAAA+AGG | 0.459107 | 3_2:+5216859 | Msa0392240:CDS |
ATGTTTCGTGCGGTTGACTA+CGG | 0.465735 | 3_2:+5218290 | Msa0392240:CDS |
TCTTTCTCCGGTGCCGGTGA+CGG | 0.473264 | 3_2:-5215498 | None:intergenic |
GGGATTTCCGAAATTTGTAA+AGG | 0.476832 | 3_2:+5218193 | Msa0392240:CDS |
TTGTTCCTGATGGTCGTGAA+TGG | 0.477275 | 3_2:+5216343 | Msa0392240:CDS |
ATTTCCCATTCACGACCATC+AGG | 0.482051 | 3_2:-5216348 | None:intergenic |
CTGTGTGTTTGTTTCTCCAT+TGG | 0.483276 | 3_2:-5217782 | None:intergenic |
AAAATTCTCAAGGAAAGCAT+TGG | 0.485732 | 3_2:+5218117 | Msa0392240:CDS |
TCCGTCGCCGTCACCGGCAC+CGG | 0.490647 | 3_2:+5215491 | Msa0392240:CDS |
GCAACTTGTAGCACAACAAC+AGG | 0.493988 | 3_2:-5216982 | None:intergenic |
ACTGTTGCCAATTGTTGCTA+AGG | 0.496870 | 3_2:-5216401 | None:intergenic |
GAATACTATTCCATCAGTTA+CGG | 0.500398 | 3_2:+5216429 | Msa0392240:CDS |
ATGTGTTCCGTCGCCGTCAC+CGG | 0.509296 | 3_2:+5215485 | Msa0392240:CDS |
ATTCTCAATGCAAATAACAA+TGG | 0.514820 | 3_2:+5218172 | Msa0392240:CDS |
TGTTCCTGATGGTCGTGAAT+GGG | 0.518981 | 3_2:+5216344 | Msa0392240:CDS |
CTCAAAACTCTAAGTACCAA+TGG | 0.522769 | 3_2:+5217766 | Msa0392240:CDS |
ACTGCCACTTGTTTCAACCC+TGG | 0.525622 | 3_2:-5217827 | None:intergenic |
TCCGGTGCCGGTGACGGCGA+CGG | 0.526161 | 3_2:-5215492 | None:intergenic |
TGAGTTGATCAAGGAGAAGC+CGG | 0.526203 | 3_2:+5218250 | Msa0392240:CDS |
TTGTGTGTTTGAGTTGATCA+AGG | 0.529271 | 3_2:+5218241 | Msa0392240:CDS |
GATGGTCGTGAATGGGAAAT+GGG | 0.538439 | 3_2:+5216351 | Msa0392240:CDS |
GTGGATTCAGTAAATTTGCA+AGG | 0.539955 | 3_2:+5216905 | Msa0392240:CDS |
TATTATATTTGATGTAACTT+CGG | 0.545296 | 3_2:+5217726 | Msa0392240:CDS |
TTTCATTCAAAATCCGTCAA+GGG | 0.556507 | 3_2:+5216642 | Msa0392240:CDS |
TACATATCTTTCAAATACGA+AGG | 0.575333 | 3_2:+5217685 | Msa0392240:CDS |
TTCATGCTCCAAAACTCTCA+AGG | 0.581396 | 3_2:+5216820 | Msa0392240:CDS |
AGGGAAAACAATCTATTAGA+GGG | 0.584707 | 3_2:+5216925 | Msa0392240:CDS |
TGGATTCAGTAAATTTGCAA+GGG | 0.590777 | 3_2:+5216906 | Msa0392240:CDS |
AAAACTCTCAAGGAAAGCAG+TGG | 0.591204 | 3_2:+5216830 | Msa0392240:CDS |
CAATGCAGCCTCCATGCGGA+AGG | 0.592466 | 3_2:+5217138 | Msa0392240:intron |
AATTGCTAAGCGAAATCTTG+TGG | 0.593067 | 3_2:+5217948 | Msa0392240:CDS |
GACTGGGCACACCTTCCGCA+TGG | 0.593609 | 3_2:-5217149 | None:intergenic |
ATGTGTTTGAGCTGATCAAG+AGG | 0.597303 | 3_2:+5216956 | Msa0392240:CDS |
TCTTTGTCTTGAATGGGCGA+GGG | 0.598003 | 3_2:-5217224 | None:intergenic |
AATGACAGAAAACGAAGTAA+GGG | 0.598240 | 3_2:+5217172 | Msa0392240:CDS |
ATCGCACTCCAAAATTCTCA+AGG | 0.598710 | 3_2:+5218107 | Msa0392240:CDS |
ACAAGTTGCAGCAATTTGCA+CGG | 0.599452 | 3_2:+5216996 | Msa0392240:CDS |
TACTCCTATGAAAAGTTCCA+GGG | 0.613948 | 3_2:+5217810 | Msa0392240:CDS |
AAGAAACAATGAAGACTCAC+CGG | 0.615286 | 3_2:+5215457 | None:intergenic |
GCTACAGTTACTGTTCCTGA+TGG | 0.628443 | 3_2:+5217562 | Msa0392240:CDS |
AGTTCCAGGGTTGAAACAAG+TGG | 0.632824 | 3_2:+5217823 | Msa0392240:CDS |
TCATCAATGCGAATAACGAG+TGG | 0.633101 | 3_2:+5216886 | Msa0392240:CDS |
AAACTCTCAAGGAAAGCAGT+GGG | 0.637619 | 3_2:+5216831 | Msa0392240:CDS |
CGTTCATCATCACAGTAGAG+AGG | 0.640207 | 3_2:-5218318 | None:intergenic |
AAAAGTCACAATGTTTCGTG+CGG | 0.653466 | 3_2:+5218280 | Msa0392240:CDS |
AAGGACAACAATCTGACACA+TGG | 0.654644 | 3_2:+5218212 | Msa0392240:CDS |
TGGGCACACCTTCCGCATGG+AGG | 0.664596 | 3_2:-5217146 | None:intergenic |
GAAATGGGACTGACGAAATG+TGG | 0.673053 | 3_2:+5216366 | Msa0392240:CDS |
ATTGCAATGCAGCCTCCATG+CGG | 0.701402 | 3_2:+5217134 | Msa0392240:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTTTATTCTTATCAT+CGG | - | chr3_2:5217324-5217343 | None:intergenic | 10.0% |
!! | ATTAATTATTAGTGTATGTT+TGG | + | chr3_2:5215751-5215770 | Msa0392240:intron | 15.0% |
!! | CACAAATTATTTACAAATTT+GGG | - | chr3_2:5216094-5216113 | None:intergenic | 15.0% |
!! | ACACAAATTATTTACAAATT+TGG | - | chr3_2:5216095-5216114 | None:intergenic | 15.0% |
!! | ATGAGTTTATAAATAGATTT+GGG | + | chr3_2:5216292-5216311 | Msa0392240:CDS | 15.0% |
!!! | TTTTTTTTATTCTTATCATC+GGG | - | chr3_2:5217323-5217342 | None:intergenic | 15.0% |
!! | TATTATATTTGATGTAACTT+CGG | + | chr3_2:5217726-5217745 | Msa0392240:CDS | 15.0% |
!!! | CAATTTTTGAACAAAAATAA+GGG | - | chr3_2:5217933-5217952 | None:intergenic | 15.0% |
!!! | CATTTTATAAACCTACAAAT+TGG | + | chr3_2:5215883-5215902 | Msa0392240:intron | 20.0% |
!!! | ATGTTTGAACTAATTTTTGT+GGG | - | chr3_2:5216136-5216155 | None:intergenic | 20.0% |
!! | AATCTATTTATAAACTCATC+TGG | - | chr3_2:5216291-5216310 | None:intergenic | 20.0% |
!! | GATGAGTTTATAAATAGATT+TGG | + | chr3_2:5216291-5216310 | Msa0392240:CDS | 20.0% |
!!! | TTTTTAGATTTCAAGTATGA+AGG | + | chr3_2:5216456-5216475 | Msa0392240:CDS | 20.0% |
!!! | TTTTAGATTTCAAGTATGAA+GGG | + | chr3_2:5216457-5216476 | Msa0392240:CDS | 20.0% |
!!! | AATGAAAATAAGGGTTTTTT+GGG | - | chr3_2:5216629-5216648 | None:intergenic | 20.0% |
!!! | ATGTTTGAGTTATATACTTA+CGG | + | chr3_2:5216715-5216734 | Msa0392240:intron | 20.0% |
!!! | TAAAAAGTATTTGATGCTAA+TGG | + | chr3_2:5216792-5216811 | Msa0392240:CDS | 20.0% |
!! | TATTGTATTTCGAATACAAA+AGG | + | chr3_2:5216859-5216878 | Msa0392240:CDS | 20.0% |
!!! | TTTTTTTATTCTTATCATCG+GGG | - | chr3_2:5217322-5217341 | None:intergenic | 20.0% |
!! | ATGAGTTTATAACAAGATTT+GGG | + | chr3_2:5217521-5217540 | Msa0392240:CDS | 20.0% |
!!! | GCAATTTTTGAACAAAAATA+AGG | - | chr3_2:5217934-5217953 | None:intergenic | 20.0% |
!!! | GAATTTTACTTTGTAGTTTT+TGG | + | chr3_2:5217974-5217993 | Msa0392240:intron | 20.0% |
! | TATGGCTTTCATAAAATGTT+TGG | - | chr3_2:5215526-5215545 | None:intergenic | 25.0% |
!!! | ACTATTTCTTTTGTATGATC+TGG | - | chr3_2:5215558-5215577 | None:intergenic | 25.0% |
!!! | TGTTATGTGTTTTGGATTAA+TGG | + | chr3_2:5215822-5215841 | Msa0392240:intron | 25.0% |
! | TACAAGTTAGGATATATTCT+AGG | + | chr3_2:5216052-5216071 | Msa0392240:intron | 25.0% |
! | ACAAGTTAGGATATATTCTA+GGG | + | chr3_2:5216053-5216072 | Msa0392240:intron | 25.0% |
!! | CATGTTTGAACTAATTTTTG+TGG | - | chr3_2:5216137-5216156 | None:intergenic | 25.0% |
! | ATCAATCAAACTTCAAAAGA+GGG | - | chr3_2:5216224-5216243 | None:intergenic | 25.0% |
!! | TTCATCAGTTTTACTACTAT+AGG | - | chr3_2:5216247-5216266 | None:intergenic | 25.0% |
!!! | GAATGAAAATAAGGGTTTTT+TGG | - | chr3_2:5216630-5216649 | None:intergenic | 25.0% |
!! | CGGATTTTGAATGAAAATAA+GGG | - | chr3_2:5216638-5216657 | None:intergenic | 25.0% |
!! | ACGGATTTTGAATGAAAATA+AGG | - | chr3_2:5216639-5216658 | None:intergenic | 25.0% |
!!! | GATTTCACTTTCTAGTTTTT+TGG | + | chr3_2:5216680-5216699 | Msa0392240:intron | 25.0% |
! | ACTACTTCAAAACATCAAAT+TGG | + | chr3_2:5217414-5217433 | Msa0392240:intron | 25.0% |
! | CTACTTCAAAACATCAAATT+GGG | + | chr3_2:5217415-5217434 | Msa0392240:intron | 25.0% |
! | TACTTCAAAACATCAAATTG+GGG | + | chr3_2:5217416-5217435 | Msa0392240:intron | 25.0% |
! | CTATAATACCAAACTTCAAA+AGG | - | chr3_2:5217463-5217482 | None:intergenic | 25.0% |
! | GGTATTATAGTATAACCAAT+AGG | + | chr3_2:5217473-5217492 | Msa0392240:intron | 25.0% |
!! | AATCTTGTTATAAACTCATC+TGG | - | chr3_2:5217520-5217539 | None:intergenic | 25.0% |
! | GATGAGTTTATAACAAGATT+TGG | + | chr3_2:5217520-5217539 | Msa0392240:CDS | 25.0% |
! | TTTGCAAAATACTATTCGTT+AGG | + | chr3_2:5217652-5217671 | Msa0392240:CDS | 25.0% |
! | AAATACTATTCGTTAGGATA+TGG | + | chr3_2:5217658-5217677 | Msa0392240:CDS | 25.0% |
! | TACATATCTTTCAAATACGA+AGG | + | chr3_2:5217685-5217704 | Msa0392240:CDS | 25.0% |
! | AAAAAGCTCAAAATCAAGTT+TGG | + | chr3_2:5217856-5217875 | Msa0392240:CDS | 25.0% |
!!! | GTTTTTTGGATTGAATTCAT+TGG | - | chr3_2:5217911-5217930 | None:intergenic | 25.0% |
!!! | GAACAAAAATAAGGGTTTTT+TGG | - | chr3_2:5217925-5217944 | None:intergenic | 25.0% |
! | ATTTGCATTGAGAATGATTT+GGG | - | chr3_2:5218167-5218186 | None:intergenic | 25.0% |
! | TATTTGCATTGAGAATGATT+TGG | - | chr3_2:5218168-5218187 | None:intergenic | 25.0% |
! | ATTCTCAATGCAAATAACAA+TGG | + | chr3_2:5218172-5218191 | Msa0392240:CDS | 25.0% |
! | TTCTCAATGCAAATAACAAT+GGG | + | chr3_2:5218173-5218192 | Msa0392240:CDS | 25.0% |
! | TTGTTGTCCTTTACAAATTT+CGG | - | chr3_2:5218203-5218222 | None:intergenic | 25.0% |
! | AAATGTTTGGAATCTTTCTC+CGG | - | chr3_2:5215513-5215532 | None:intergenic | 30.0% |
! | ATTTCTTTTGTATGATCTGG+AGG | - | chr3_2:5215555-5215574 | None:intergenic | 30.0% |
! | TGAGTATGTGTTATGTGTTT+TGG | + | chr3_2:5215814-5215833 | Msa0392240:intron | 30.0% |
! | TTTGAACTAATTTTTGTGGG+AGG | - | chr3_2:5216133-5216152 | None:intergenic | 30.0% |
TCAATCAAACTTCAAAAGAG+GGG | - | chr3_2:5216223-5216242 | None:intergenic | 30.0% | |
GATCAATCAAACTTCAAAAG+AGG | - | chr3_2:5216225-5216244 | None:intergenic | 30.0% | |
GAATACTATTCCATCAGTTA+CGG | + | chr3_2:5216429-5216448 | Msa0392240:CDS | 30.0% | |
TAAAAAACAACCGTAACTGA+TGG | - | chr3_2:5216442-5216461 | None:intergenic | 30.0% | |
!!! | TTAGTACTTGGAGTTTTGAA+TGG | - | chr3_2:5216537-5216556 | None:intergenic | 30.0% |
TTCAAAACTCCAAGTACTAA+TGG | + | chr3_2:5216537-5216556 | Msa0392240:CDS | 30.0% | |
TAATGGAGATCAAAGCATAA+AGG | + | chr3_2:5216554-5216573 | Msa0392240:CDS | 30.0% | |
AATGGAGATCAAAGCATAAA+GGG | + | chr3_2:5216555-5216574 | Msa0392240:CDS | 30.0% | |
! | TTTTCATTCAAAATCCGTCA+AGG | + | chr3_2:5216641-5216660 | Msa0392240:CDS | 30.0% |
TTTCATTCAAAATCCGTCAA+GGG | + | chr3_2:5216642-5216661 | Msa0392240:CDS | 30.0% | |
!! | TACTTTTTAGCAAAACCAGA+AGG | - | chr3_2:5216781-5216800 | None:intergenic | 30.0% |
TGGATTCAGTAAATTTGCAA+GGG | + | chr3_2:5216906-5216925 | Msa0392240:CDS | 30.0% | |
AAGGGAAAACAATCTATTAG+AGG | + | chr3_2:5216924-5216943 | Msa0392240:CDS | 30.0% | |
AGGGAAAACAATCTATTAGA+GGG | + | chr3_2:5216925-5216944 | Msa0392240:CDS | 30.0% | |
! | TCTTTTAATGTCTGAACTGT+TGG | + | chr3_2:5217075-5217094 | Msa0392240:intron | 30.0% |
AATGACAGAAAACGAAGTAA+GGG | + | chr3_2:5217172-5217191 | Msa0392240:CDS | 30.0% | |
!! | GGAATCGAAACATTTTAAGA+AGG | + | chr3_2:5217193-5217212 | Msa0392240:CDS | 30.0% |
ACTATCTCTTTGTCTTGAAT+GGG | - | chr3_2:5217233-5217252 | None:intergenic | 30.0% | |
TACTATCTCTTTGTCTTGAA+TGG | - | chr3_2:5217234-5217253 | None:intergenic | 30.0% | |
ACAGTAACTCAAAACAGAAA+GGG | - | chr3_2:5217262-5217281 | None:intergenic | 30.0% | |
AACAGTAACTCAAAACAGAA+AGG | - | chr3_2:5217263-5217282 | None:intergenic | 30.0% | |
CTAGACACCTAAATTTGATT+TGG | - | chr3_2:5217372-5217391 | None:intergenic | 30.0% | |
AATACCAAACTTCAAAAGGA+GGG | - | chr3_2:5217459-5217478 | None:intergenic | 30.0% | |
TAATACCAAACTTCAAAAGG+AGG | - | chr3_2:5217460-5217479 | None:intergenic | 30.0% | |
! | ACATTTTCTTTTGCAACGAA+TGG | + | chr3_2:5217623-5217642 | Msa0392240:CDS | 30.0% |
! | AATGCTTTCCTTGAGAATTT+TGG | - | chr3_2:5218118-5218137 | None:intergenic | 30.0% |
! | AAAATTCTCAAGGAAAGCAT+TGG | + | chr3_2:5218117-5218136 | Msa0392240:CDS | 30.0% |
!! | ACTCTAACTCTGAAACTTTG+AGG | + | chr3_2:5215612-5215631 | Msa0392240:intron | 35.0% |
ATGCAAAAAACTTCGAGTCA+GGG | + | chr3_2:5216028-5216047 | Msa0392240:intron | 35.0% | |
!! | GCTATCATTTTTGTTCCTGA+TGG | + | chr3_2:5216333-5216352 | Msa0392240:CDS | 35.0% |
! | ACGTTTTCCTTAGCAACAAT+TGG | + | chr3_2:5216394-5216413 | Msa0392240:CDS | 35.0% |
CTTTGATCTCCATTAGTACT+TGG | - | chr3_2:5216549-5216568 | None:intergenic | 35.0% | |
!!! | GTTTTTTGGGTTGAATTCAC+TGG | - | chr3_2:5216616-5216635 | None:intergenic | 35.0% |
GTGGATTCAGTAAATTTGCA+AGG | + | chr3_2:5216905-5216924 | Msa0392240:CDS | 35.0% | |
! | TGAACTGTTGGTGAACTTAA+TGG | + | chr3_2:5217087-5217106 | Msa0392240:intron | 35.0% |
!! | TTCGTTTTCTGTCATTGACT+GGG | - | chr3_2:5217168-5217187 | None:intergenic | 35.0% |
CAATGACAGAAAACGAAGTA+AGG | + | chr3_2:5217171-5217190 | Msa0392240:CDS | 35.0% | |
GACGTGTCCAAATCAAATTT+AGG | + | chr3_2:5217362-5217381 | Msa0392240:intron | 35.0% | |
!!! | TTGGTACTTAGAGTTTTGAG+TGG | - | chr3_2:5217766-5217785 | None:intergenic | 35.0% |
CTCAAAACTCTAAGTACCAA+TGG | + | chr3_2:5217766-5217785 | Msa0392240:CDS | 35.0% | |
TACTCCTATGAAAAGTTCCA+GGG | + | chr3_2:5217810-5217829 | Msa0392240:CDS | 35.0% | |
!! | ACATGCTTTTAAAAGTGCAG+AGG | + | chr3_2:5217879-5217898 | Msa0392240:CDS | 35.0% |
AATTGCTAAGCGAAATCTTG+TGG | + | chr3_2:5217948-5217967 | Msa0392240:CDS | 35.0% | |
GGGATTTCCGAAATTTGTAA+AGG | + | chr3_2:5218193-5218212 | Msa0392240:CDS | 35.0% | |
!! | TTGTGTGTTTGAGTTGATCA+AGG | + | chr3_2:5218241-5218260 | Msa0392240:CDS | 35.0% |
! | ATTGTGACTTTTAGCACAAC+CGG | - | chr3_2:5218272-5218291 | None:intergenic | 35.0% |
AAAAGTCACAATGTTTCGTG+CGG | + | chr3_2:5218280-5218299 | Msa0392240:CDS | 35.0% | |
! | TCTTTTGTATGATCTGGAGG+AGG | - | chr3_2:5215552-5215571 | None:intergenic | 40.0% |
!! | AGGACTAGCTACACACATAT+AGG | - | chr3_2:5215663-5215682 | None:intergenic | 40.0% |
TTGAGCCTACAGATCATGTT+TGG | + | chr3_2:5216005-5216024 | Msa0392240:intron | 40.0% | |
TGCATCCAAACATGATCTGT+AGG | - | chr3_2:5216013-5216032 | None:intergenic | 40.0% | |
GATGCAAAAAACTTCGAGTC+AGG | + | chr3_2:5216027-5216046 | Msa0392240:intron | 40.0% | |
ACTGTTGCCAATTGTTGCTA+AGG | - | chr3_2:5216404-5216423 | None:intergenic | 40.0% | |
!!! | ACTCTTTTGGGATCAGAGTT+AGG | - | chr3_2:5216582-5216601 | None:intergenic | 40.0% |
! | GCAGCACAATTCACTCTTTT+GGG | - | chr3_2:5216594-5216613 | None:intergenic | 40.0% |
AGGAACGTACTACAGAATGA+AGG | - | chr3_2:5216761-5216780 | None:intergenic | 40.0% | |
ATTCTGTAGTACGTTCCTTC+TGG | + | chr3_2:5216763-5216782 | Msa0392240:intron | 40.0% | |
!!! | TGAGAGTTTTGGAGCATGAA+CGG | - | chr3_2:5216820-5216839 | None:intergenic | 40.0% |
TTCATGCTCCAAAACTCTCA+AGG | + | chr3_2:5216820-5216839 | Msa0392240:CDS | 40.0% | |
! | ACTGCTTTCCTTGAGAGTTT+TGG | - | chr3_2:5216831-5216850 | None:intergenic | 40.0% |
AAAACTCTCAAGGAAAGCAG+TGG | + | chr3_2:5216830-5216849 | Msa0392240:CDS | 40.0% | |
AAACTCTCAAGGAAAGCAGT+GGG | + | chr3_2:5216831-5216850 | Msa0392240:CDS | 40.0% | |
TCATCAATGCGAATAACGAG+TGG | + | chr3_2:5216886-5216905 | Msa0392240:CDS | 40.0% | |
ATGTGTTTGAGCTGATCAAG+AGG | + | chr3_2:5216956-5216975 | Msa0392240:CDS | 40.0% | |
ACAAGTTGCAGCAATTTGCA+CGG | + | chr3_2:5216996-5217015 | Msa0392240:CDS | 40.0% | |
! | CTTCGTTTTCTGTCATTGAC+TGG | - | chr3_2:5217169-5217188 | None:intergenic | 40.0% |
!!! | GTTACCCTCCTTTTGAAGTT+TGG | + | chr3_2:5217452-5217471 | Msa0392240:intron | 40.0% |
! | ATTTTCCAATCACGACCATC+AGG | - | chr3_2:5217580-5217599 | None:intergenic | 40.0% |
! | CTGTGTGTTTGTTTCTCCAT+TGG | - | chr3_2:5217785-5217804 | None:intergenic | 40.0% |
! | CTGGAACTTTTCATAGGAGT+AGG | - | chr3_2:5217811-5217830 | None:intergenic | 40.0% |
CTACTCCTATGAAAAGTTCC+AGG | + | chr3_2:5217809-5217828 | Msa0392240:CDS | 40.0% | |
! | TCAACCCTGGAACTTTTCAT+AGG | - | chr3_2:5217817-5217836 | None:intergenic | 40.0% |
!!! | TGAGAATTTTGGAGTGCGAT+TGG | - | chr3_2:5218107-5218126 | None:intergenic | 40.0% |
ATCGCACTCCAAAATTCTCA+AGG | + | chr3_2:5218107-5218126 | Msa0392240:CDS | 40.0% | |
AAGGACAACAATCTGACACA+TGG | + | chr3_2:5218212-5218231 | Msa0392240:CDS | 40.0% | |
ATGATCTGGAGGAGGAAGTA+TGG | - | chr3_2:5215544-5215563 | None:intergenic | 45.0% | |
!!! | GTGGGAGGCAACATTGATTT+TGG | - | chr3_2:5216118-5216137 | None:intergenic | 45.0% |
TTGTTCCTGATGGTCGTGAA+TGG | + | chr3_2:5216343-5216362 | Msa0392240:CDS | 45.0% | |
TGTTCCTGATGGTCGTGAAT+GGG | + | chr3_2:5216344-5216363 | Msa0392240:CDS | 45.0% | |
ATTTCCCATTCACGACCATC+AGG | - | chr3_2:5216351-5216370 | None:intergenic | 45.0% | |
TGATGGTCGTGAATGGGAAA+TGG | + | chr3_2:5216350-5216369 | Msa0392240:CDS | 45.0% | |
GATGGTCGTGAATGGGAAAT+GGG | + | chr3_2:5216351-5216370 | Msa0392240:CDS | 45.0% | |
GAAATGGGACTGACGAAATG+TGG | + | chr3_2:5216366-5216385 | Msa0392240:CDS | 45.0% | |
! | GGCAGCACAATTCACTCTTT+TGG | - | chr3_2:5216595-5216614 | None:intergenic | 45.0% |
!!! | ATCCGTCAAGGGCATTTTTG+CGG | + | chr3_2:5216653-5216672 | Msa0392240:CDS | 45.0% |
CGTACTACAGAATGAAGGAG+AGG | - | chr3_2:5216756-5216775 | None:intergenic | 45.0% | |
GCAACTTGTAGCACAACAAC+AGG | - | chr3_2:5216985-5217004 | None:intergenic | 45.0% | |
TCTTTGTCTTGAATGGGCGA+GGG | - | chr3_2:5217227-5217246 | None:intergenic | 45.0% | |
CTGCAGTGATAACAGCCTAT+TGG | - | chr3_2:5217491-5217510 | None:intergenic | 45.0% | |
GCTACAGTTACTGTTCCTGA+TGG | + | chr3_2:5217562-5217581 | Msa0392240:CDS | 45.0% | |
AGTTCCAGGGTTGAAACAAG+TGG | + | chr3_2:5217823-5217842 | Msa0392240:CDS | 45.0% | |
TGGAGTGCGATTGGAACATT+TGG | - | chr3_2:5218098-5218117 | None:intergenic | 45.0% | |
!! | TGAGTTGATCAAGGAGAAGC+CGG | + | chr3_2:5218250-5218269 | Msa0392240:CDS | 45.0% |
ATGTTTCGTGCGGTTGACTA+CGG | + | chr3_2:5218290-5218309 | Msa0392240:CDS | 45.0% | |
!! | AAAAATAAATATAAAACAAT+AGG | - | chr3_2:5215683-5215702 | None:intergenic | 5.0% |
TTGGAATCTTTCTCCGGTGC+CGG | - | chr3_2:5215507-5215526 | None:intergenic | 50.0% | |
TACAAATTGGAGCCTCTCCG+CGG | + | chr3_2:5215896-5215915 | Msa0392240:intron | 50.0% | |
! | ATGTTGTGATGACGAGTCCG+CGG | - | chr3_2:5215916-5215935 | None:intergenic | 50.0% |
TCGAGTCAGGGCTACAAGTT+AGG | + | chr3_2:5216040-5216059 | Msa0392240:intron | 50.0% | |
CACCGCAAAAATGCCCTTGA+CGG | - | chr3_2:5216658-5216677 | None:intergenic | 50.0% | |
!!! | TCAAGGGCATTTTTGCGGTG+AGG | + | chr3_2:5216658-5216677 | Msa0392240:intron | 50.0% |
ATTGCAATGCAGCCTCCATG+CGG | + | chr3_2:5217134-5217153 | Msa0392240:intron | 50.0% | |
TTGAATGGGCGAGGGAAGTA+TGG | - | chr3_2:5217219-5217238 | None:intergenic | 50.0% | |
CTCTTTGTCTTGAATGGGCG+AGG | - | chr3_2:5217228-5217247 | None:intergenic | 50.0% | |
CTGTTCCTGATGGTCGTGAT+TGG | + | chr3_2:5217572-5217591 | Msa0392240:CDS | 50.0% | |
! | ACTGCCACTTGTTTCAACCC+TGG | - | chr3_2:5217830-5217849 | None:intergenic | 50.0% |
GCGACGGAACACATCTTTGC+CGG | - | chr3_2:5215479-5215498 | None:intergenic | 55.0% | |
GCGGAGAGGCTCCAATTTGT+AGG | - | chr3_2:5215897-5215916 | None:intergenic | 55.0% | |
ATGTGTTCCGTCGCCGTCAC+CGG | + | chr3_2:5215485-5215504 | Msa0392240:CDS | 60.0% | |
!! | TCTTTCTCCGGTGCCGGTGA+CGG | - | chr3_2:5215501-5215520 | None:intergenic | 60.0% |
CAATGCAGCCTCCATGCGGA+AGG | + | chr3_2:5217138-5217157 | Msa0392240:intron | 60.0% | |
! | GTGATGACGAGTCCGCGGAG+AGG | - | chr3_2:5215911-5215930 | None:intergenic | 65.0% |
TGGGCACACCTTCCGCATGG+AGG | - | chr3_2:5217149-5217168 | None:intergenic | 65.0% | |
GACTGGGCACACCTTCCGCA+TGG | - | chr3_2:5217152-5217171 | None:intergenic | 65.0% | |
TCCGTCGCCGTCACCGGCAC+CGG | + | chr3_2:5215491-5215510 | Msa0392240:CDS | 75.0% | |
!! | TCCGGTGCCGGTGACGGCGA+CGG | - | chr3_2:5215495-5215514 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 5215465 | 5218331 | 5215465 | ID=Msa0392240;Name=Msa0392240 |
chr3_2 | mRNA | 5215465 | 5218331 | 5215465 | ID=Msa0392240-mRNA-1;Parent=Msa0392240;Name=Msa0392240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.4|0.16|1|1|1|6|0|528 |
chr3_2 | exon | 5215465 | 5215575 | 5215465 | ID=Msa0392240-mRNA-1:exon:1264;Parent=Msa0392240-mRNA-1 |
chr3_2 | exon | 5216282 | 5216674 | 5216282 | ID=Msa0392240-mRNA-1:exon:1265;Parent=Msa0392240-mRNA-1 |
chr3_2 | exon | 5216772 | 5217017 | 5216772 | ID=Msa0392240-mRNA-1:exon:1266;Parent=Msa0392240-mRNA-1 |
chr3_2 | exon | 5217146 | 5217250 | 5217146 | ID=Msa0392240-mRNA-1:exon:1267;Parent=Msa0392240-mRNA-1 |
chr3_2 | exon | 5217511 | 5217969 | 5217511 | ID=Msa0392240-mRNA-1:exon:1268;Parent=Msa0392240-mRNA-1 |
chr3_2 | exon | 5218059 | 5218331 | 5218059 | ID=Msa0392240-mRNA-1:exon:1269;Parent=Msa0392240-mRNA-1 |
chr3_2 | CDS | 5215465 | 5215575 | 5215465 | ID=Msa0392240-mRNA-1:cds;Parent=Msa0392240-mRNA-1 |
chr3_2 | CDS | 5216282 | 5216674 | 5216282 | ID=Msa0392240-mRNA-1:cds;Parent=Msa0392240-mRNA-1 |
chr3_2 | CDS | 5216772 | 5217017 | 5216772 | ID=Msa0392240-mRNA-1:cds;Parent=Msa0392240-mRNA-1 |
chr3_2 | CDS | 5217146 | 5217250 | 5217146 | ID=Msa0392240-mRNA-1:cds;Parent=Msa0392240-mRNA-1 |
chr3_2 | CDS | 5217511 | 5217969 | 5217511 | ID=Msa0392240-mRNA-1:cds;Parent=Msa0392240-mRNA-1 |
chr3_2 | CDS | 5218059 | 5218331 | 5218059 | ID=Msa0392240-mRNA-1:cds;Parent=Msa0392240-mRNA-1 |
Gene Sequence |
Protein sequence |