Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392680 | AES68327.1 | 76.812 | 69 | 15 | 1 | 52 | 119 | 11 | 79 | 3.86e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392680 | sp|Q9SRH9|SNL1_ARATH | 55.844 | 77 | 33 | 1 | 41 | 117 | 51 | 126 | 4.84e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392680 | G7J084 | 76.812 | 69 | 15 | 1 | 52 | 119 | 11 | 79 | 1.85e-26 | 103 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0392680 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392680 | MtrunA17_Chr3g0077891 | 70.886 | 79 | 23 | 0 | 45 | 123 | 97 | 175 | 4.02e-30 | 106 |
| Msa0392680 | MtrunA17_Chr3g0077891 | 50.685 | 73 | 36 | 0 | 47 | 119 | 8 | 80 | 1.33e-13 | 63.9 |
| Msa0392680 | MtrunA17_Chr3g0077941 | 65.823 | 79 | 27 | 0 | 45 | 123 | 96 | 174 | 2.56e-28 | 101 |
| Msa0392680 | MtrunA17_Chr3g0077941 | 50.685 | 73 | 36 | 0 | 47 | 119 | 8 | 80 | 2.51e-14 | 65.9 |
| Msa0392680 | MtrunA17_Chr3g0077881 | 68.354 | 79 | 25 | 0 | 45 | 123 | 97 | 175 | 3.52e-28 | 101 |
| Msa0392680 | MtrunA17_Chr3g0077881 | 50.000 | 78 | 39 | 0 | 47 | 124 | 8 | 85 | 8.67e-15 | 67.0 |
| Msa0392680 | MtrunA17_Chr3g0077861 | 58.974 | 78 | 32 | 0 | 46 | 123 | 89 | 166 | 6.26e-22 | 85.1 |
| Msa0392680 | MtrunA17_Chr3g0077861 | 49.231 | 65 | 33 | 0 | 60 | 124 | 17 | 81 | 2.44e-12 | 60.5 |
| Msa0392680 | MtrunA17_Chr8g0364231 | 56.410 | 78 | 33 | 1 | 41 | 118 | 36 | 112 | 5.28e-20 | 84.3 |
| Msa0392680 | MtrunA17_Chr3g0077911 | 59.722 | 72 | 29 | 0 | 46 | 117 | 89 | 160 | 3.73e-19 | 77.8 |
| Msa0392680 | MtrunA17_Chr3g0077911 | 47.436 | 78 | 37 | 1 | 47 | 124 | 8 | 81 | 1.05e-12 | 61.2 |
| Msa0392680 | MtrunA17_Chr5g0415031 | 54.545 | 77 | 34 | 1 | 41 | 117 | 37 | 112 | 1.86e-18 | 80.1 |
| Msa0392680 | MtrunA17_Chr6g0452001 | 53.247 | 77 | 35 | 1 | 41 | 117 | 57 | 132 | 3.61e-17 | 76.3 |
| Msa0392680 | MtrunA17_Chr1g0206781 | 52.778 | 72 | 33 | 1 | 45 | 116 | 9 | 79 | 4.19e-16 | 68.9 |
| Msa0392680 | MtrunA17_Chr1g0206771 | 54.286 | 70 | 31 | 1 | 47 | 116 | 95 | 163 | 4.72e-16 | 70.5 |
| Msa0392680 | MtrunA17_Chr1g0206771 | 57.812 | 64 | 26 | 1 | 48 | 111 | 17 | 79 | 5.66e-16 | 70.1 |
| Msa0392680 | MtrunA17_Chr1g0205811 | 53.425 | 73 | 33 | 1 | 51 | 123 | 18 | 89 | 6.49e-16 | 68.6 |
| Msa0392680 | MtrunA17_Chr1g0205821 | 49.367 | 79 | 39 | 1 | 44 | 122 | 10 | 87 | 3.63e-15 | 67.8 |
| Msa0392680 | MtrunA17_Chr1g0205821 | 42.353 | 85 | 48 | 1 | 38 | 122 | 90 | 173 | 1.96e-11 | 58.2 |
| Msa0392680 | MtrunA17_Chr4g0075971 | 51.899 | 79 | 35 | 2 | 43 | 121 | 170 | 245 | 8.39e-15 | 69.3 |
| Msa0392680 | MtrunA17_Chr4g0075971 | 45.455 | 77 | 41 | 1 | 46 | 122 | 88 | 163 | 4.59e-11 | 58.5 |
| Msa0392680 | MtrunA17_Chr6g0452021 | 50.685 | 73 | 35 | 1 | 45 | 117 | 41 | 112 | 1.04e-14 | 68.9 |
| Msa0392680 | MtrunA17_Chr4g0075861 | 52.564 | 78 | 34 | 2 | 44 | 121 | 171 | 245 | 1.60e-14 | 68.6 |
| Msa0392680 | MtrunA17_Chr4g0075861 | 48.649 | 74 | 37 | 1 | 46 | 119 | 88 | 160 | 5.15e-13 | 64.3 |
| Msa0392680 | MtrunA17_Chr4g0075861 | 44.000 | 75 | 38 | 1 | 44 | 118 | 9 | 79 | 7.01e-11 | 58.2 |
| Msa0392680 | MtrunA17_Chr7g0218891 | 44.000 | 75 | 41 | 1 | 45 | 118 | 11 | 85 | 3.80e-14 | 66.6 |
| Msa0392680 | MtrunA17_Chr7g0218891 | 42.857 | 77 | 43 | 1 | 45 | 120 | 183 | 259 | 5.63e-11 | 58.2 |
| Msa0392680 | MtrunA17_Chr3g0077811 | 47.945 | 73 | 38 | 0 | 47 | 119 | 13 | 85 | 6.32e-14 | 63.5 |
| Msa0392680 | MtrunA17_Chr1g0205801 | 48.684 | 76 | 38 | 1 | 47 | 122 | 12 | 86 | 7.56e-14 | 62.8 |
| Msa0392680 | MtrunA17_Chr7g0218911 | 47.059 | 68 | 35 | 1 | 51 | 118 | 2 | 68 | 5.06e-13 | 60.8 |
| Msa0392680 | MtrunA17_Chr1g0209201 | 46.377 | 69 | 35 | 1 | 47 | 115 | 16 | 82 | 2.55e-12 | 59.7 |
| Msa0392680 | MtrunA17_Chr2g0328701 | 44.444 | 72 | 36 | 1 | 47 | 118 | 29 | 96 | 5.28e-12 | 58.5 |
| Msa0392680 | MtrunA17_Chr1g0205861 | 45.070 | 71 | 38 | 1 | 46 | 116 | 15 | 84 | 3.24e-11 | 56.2 |
| Msa0392680 | MtrunA17_Chr7g0256011 | 45.070 | 71 | 38 | 1 | 46 | 116 | 15 | 84 | 3.60e-11 | 56.2 |
| Msa0392680 | MtrunA17_Chr8g0364021 | 46.479 | 71 | 37 | 1 | 47 | 117 | 44 | 113 | 4.02e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392680 | AT3G01320.2 | 55.844 | 77 | 33 | 1 | 41 | 117 | 51 | 126 | 4.87e-19 | 82.0 |
| Msa0392680 | AT3G01320.1 | 55.844 | 77 | 33 | 1 | 41 | 117 | 51 | 126 | 4.92e-19 | 82.0 |
| Msa0392680 | AT1G70060.2 | 55.844 | 77 | 33 | 1 | 41 | 117 | 8 | 83 | 2.25e-18 | 80.1 |
| Msa0392680 | AT1G70060.1 | 55.844 | 77 | 33 | 1 | 41 | 117 | 8 | 83 | 2.25e-18 | 80.1 |
| Msa0392680 | AT1G24190.3 | 53.247 | 77 | 35 | 1 | 41 | 117 | 8 | 83 | 8.93e-18 | 78.2 |
| Msa0392680 | AT1G24190.1 | 53.247 | 77 | 35 | 1 | 41 | 117 | 8 | 83 | 1.01e-17 | 78.2 |
| Msa0392680 | AT1G24190.2 | 53.247 | 77 | 35 | 1 | 41 | 117 | 8 | 83 | 1.05e-17 | 78.2 |
| Msa0392680 | AT1G59890.2 | 54.930 | 71 | 31 | 1 | 47 | 117 | 45 | 114 | 1.23e-16 | 75.1 |
| Msa0392680 | AT1G59890.1 | 54.930 | 71 | 31 | 1 | 47 | 117 | 45 | 114 | 1.34e-16 | 75.1 |
| Msa0392680 | AT1G59890.3 | 54.930 | 71 | 31 | 1 | 47 | 117 | 45 | 114 | 1.35e-16 | 75.1 |
| Msa0392680 | AT5G15020.2 | 54.795 | 73 | 32 | 1 | 45 | 117 | 50 | 121 | 1.38e-16 | 75.1 |
| Msa0392680 | AT5G15020.1 | 54.795 | 73 | 32 | 1 | 45 | 117 | 50 | 121 | 1.39e-16 | 75.1 |
| Msa0392680 | AT1G59890.4 | 54.930 | 71 | 31 | 1 | 47 | 117 | 45 | 114 | 1.40e-16 | 75.1 |
| Msa0392680 | AT4G12020.11 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.08e-14 | 69.7 |
| Msa0392680 | AT4G12020.5 | 46.575 | 73 | 37 | 1 | 45 | 117 | 239 | 309 | 1.21e-14 | 69.3 |
| Msa0392680 | AT4G12020.4 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.21e-14 | 69.3 |
| Msa0392680 | AT4G12020.2 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.22e-14 | 69.3 |
| Msa0392680 | AT4G12020.7 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.23e-14 | 69.3 |
| Msa0392680 | AT4G12020.1 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.32e-14 | 69.3 |
| Msa0392680 | AT4G12020.9 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.32e-14 | 69.3 |
| Msa0392680 | AT4G12020.10 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.32e-14 | 69.3 |
| Msa0392680 | AT4G12020.3 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.33e-14 | 69.3 |
| Msa0392680 | AT4G12020.6 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.42e-14 | 69.3 |
| Msa0392680 | AT4G12020.8 | 46.575 | 73 | 37 | 1 | 45 | 117 | 306 | 376 | 1.42e-14 | 69.3 |
| Msa0392680 | AT5G15025.1 | 48.052 | 77 | 39 | 1 | 41 | 117 | 41 | 116 | 2.10e-14 | 65.1 |
| Msa0392680 | AT1G10450.3 | 50.685 | 73 | 35 | 1 | 45 | 117 | 82 | 153 | 8.97e-14 | 67.0 |
| Msa0392680 | AT1G10450.2 | 50.685 | 73 | 35 | 1 | 45 | 117 | 31 | 102 | 1.05e-13 | 66.6 |
| Msa0392680 | AT1G10450.1 | 50.685 | 73 | 35 | 1 | 45 | 117 | 31 | 102 | 1.05e-13 | 66.6 |
| Msa0392680 | AT1G70030.3 | 42.391 | 92 | 46 | 2 | 26 | 117 | 7 | 91 | 7.16e-13 | 61.2 |
| Msa0392680 | AT1G70030.2 | 42.391 | 92 | 46 | 2 | 26 | 117 | 7 | 91 | 7.71e-13 | 61.2 |
| Msa0392680 | AT1G27220.1 | 47.692 | 65 | 33 | 1 | 47 | 111 | 14 | 77 | 4.30e-12 | 60.5 |
| Msa0392680 | AT1G70030.1 | 47.945 | 73 | 37 | 1 | 45 | 117 | 9 | 80 | 1.99e-11 | 58.2 |
| Msa0392680 | AT1G24200.1 | 45.833 | 72 | 38 | 1 | 45 | 116 | 12 | 82 | 4.01e-11 | 57.8 |
Find 19 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCATACAAATTTAATTT+TGG | 0.179333 | 3_2:-5919365 | Msa0392680:CDS |
| AGAAATTGTTAAGGATTTCT+TGG | 0.275920 | 3_2:-5919440 | Msa0392680:CDS |
| ACAACATTTCTATCAATTCT+TGG | 0.285160 | 3_2:+5919415 | None:intergenic |
| ATGAGTTTCAAGATAAGGAT+AGG | 0.432045 | 3_2:-5919483 | Msa0392680:CDS |
| TCAACTGTCAAGTTTCGTTC+CGG | 0.445775 | 3_2:-5920174 | Msa0392680:intron |
| AAACTTGACAGTTGAGAGAT+AGG | 0.454707 | 3_2:+5920182 | None:intergenic |
| AATATATGTCAAGAACTAAT+CGG | 0.476367 | 3_2:+5919285 | None:intergenic |
| AAAAGATGAGTTTCAAGATA+AGG | 0.489302 | 3_2:-5919488 | Msa0392680:CDS |
| CATTTCATCTGTACACTCCA+TGG | 0.498363 | 3_2:-5920226 | Msa0392680:CDS |
| ATAGTGAATGAGCTGTTTCA+AGG | 0.517321 | 3_2:-5919385 | Msa0392680:CDS |
| ATAGGCAGATCGGAAGGAGA+AGG | 0.517534 | 3_2:+5920200 | None:intergenic |
| TGAGTTTCAAGATAAGGATA+GGG | 0.531894 | 3_2:-5919482 | Msa0392680:CDS |
| TCGGAAGGAGAAGGGAGCCA+TGG | 0.545132 | 3_2:+5920209 | None:intergenic |
| TAATCGGTGTCAATTTGAAG+TGG | 0.575427 | 3_2:+5919301 | None:intergenic |
| CAGTTGAGAGATAGGCAGAT+CGG | 0.586450 | 3_2:+5920190 | None:intergenic |
| TAGTGAATGAGCTGTTTCAA+GGG | 0.596072 | 3_2:-5919384 | Msa0392680:CDS |
| TGAGAGATAGGCAGATCGGA+AGG | 0.599798 | 3_2:+5920194 | None:intergenic |
| TAGGCAGATCGGAAGGAGAA+GGG | 0.603205 | 3_2:+5920201 | None:intergenic |
| GATGAAATGAGAAGTAGCCA+TGG | 0.609660 | 3_2:+5920240 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAAAACAATAAAAGT+TGG | + | chr3_2:5919635-5919654 | None:intergenic | 15.0% |
| !! | GTAAATAAAACAATAAAAGT+TGG | + | chr3_2:5919635-5919654 | None:intergenic | 15.0% |
| !!! | TGAGTTTTTAGAAATTGTTA+AGG | - | chr3_2:5920089-5920108 | Msa0392680:intron | 20.0% |
| !!! | TGAGTTTTTAGAAATTGTTA+AGG | - | chr3_2:5920089-5920108 | Msa0392680:intron | 20.0% |
| ! | AGATAATCATTGCTTGAATT+AGG | - | chr3_2:5919545-5919564 | Msa0392680:CDS | 25.0% |
| !!! | GATTGGTTTTTATAACGTAA+AGG | + | chr3_2:5919657-5919676 | None:intergenic | 25.0% |
| ! | TTTATAAGTTCATATCCACA+GGG | + | chr3_2:5919754-5919773 | None:intergenic | 25.0% |
| ! | ATTTATAAGTTCATATCCAC+AGG | + | chr3_2:5919755-5919774 | None:intergenic | 25.0% |
| !! | TGATGCATCTTTTGTTAAAA+AGG | + | chr3_2:5919842-5919861 | None:intergenic | 25.0% |
| ! | AAAAGATGAGTTTCAAGATA+AGG | - | chr3_2:5919905-5919924 | Msa0392680:intron | 25.0% |
| !! | TGATGCATCTTTTGTTAAAA+AGG | + | chr3_2:5919842-5919861 | None:intergenic | 25.0% |
| ! | AAAAGATGAGTTTCAAGATA+AGG | - | chr3_2:5919905-5919924 | Msa0392680:intron | 25.0% |
| ! | AGAAATTGTTAAGGATTTCT+TGG | - | chr3_2:5920098-5920117 | Msa0392680:intron | 25.0% |
| ! | ACAACATTTCTATCAATTCT+TGG | + | chr3_2:5920126-5920145 | None:intergenic | 25.0% |
| !!! | AGGGCATACAAATTTAATTT+TGG | - | chr3_2:5920173-5920192 | Msa0392680:intron | 25.0% |
| ! | AGATAATCATTGCTTGAATT+AGG | - | chr3_2:5919545-5919564 | Msa0392680:CDS | 25.0% |
| !!! | GATTGGTTTTTATAACGTAA+AGG | + | chr3_2:5919657-5919676 | None:intergenic | 25.0% |
| ! | TTTATAAGTTCATATCCACA+GGG | + | chr3_2:5919754-5919773 | None:intergenic | 25.0% |
| ! | ATTTATAAGTTCATATCCAC+AGG | + | chr3_2:5919755-5919774 | None:intergenic | 25.0% |
| !! | TGATGCATCTTTTGTTAAAA+AGG | + | chr3_2:5919842-5919861 | None:intergenic | 25.0% |
| ! | AAAAGATGAGTTTCAAGATA+AGG | - | chr3_2:5919905-5919924 | Msa0392680:intron | 25.0% |
| !! | TGATGCATCTTTTGTTAAAA+AGG | + | chr3_2:5919842-5919861 | None:intergenic | 25.0% |
| ! | AAAAGATGAGTTTCAAGATA+AGG | - | chr3_2:5919905-5919924 | Msa0392680:intron | 25.0% |
| ! | AGAAATTGTTAAGGATTTCT+TGG | - | chr3_2:5920098-5920117 | Msa0392680:intron | 25.0% |
| ! | ACAACATTTCTATCAATTCT+TGG | + | chr3_2:5920126-5920145 | None:intergenic | 25.0% |
| !!! | AGGGCATACAAATTTAATTT+TGG | - | chr3_2:5920173-5920192 | Msa0392680:intron | 25.0% |
| GACATGAATTCTAAGTTGTT+CGG | + | chr3_2:5919398-5919417 | None:intergenic | 30.0% | |
| TTAATCTCTTAATCTCTTGC+TGG | + | chr3_2:5919451-5919470 | None:intergenic | 30.0% | |
| CAAGAGATTAAGAGATTAAG+AGG | - | chr3_2:5919452-5919471 | Msa0392680:CDS | 30.0% | |
| AAATTACCATAGGAGAACTT+CGG | - | chr3_2:5919573-5919592 | Msa0392680:intron | 30.0% | |
| !! | ATTAAATTTCTAGTTGCCCT+AGG | + | chr3_2:5919686-5919705 | None:intergenic | 30.0% |
| !!! | GGACTGTTTTAATTTCTACT+CGG | + | chr3_2:5919733-5919752 | None:intergenic | 30.0% |
| ATGAGTTTCAAGATAAGGAT+AGG | - | chr3_2:5919910-5919929 | Msa0392680:intron | 30.0% | |
| TGAGTTTCAAGATAAGGATA+GGG | - | chr3_2:5919911-5919930 | Msa0392680:intron | 30.0% | |
| ATGAGTTTCAAGATAAGGAT+AGG | - | chr3_2:5919910-5919929 | Msa0392680:intron | 30.0% | |
| TGAGTTTCAAGATAAGGATA+GGG | - | chr3_2:5919911-5919930 | Msa0392680:intron | 30.0% | |
| GACATGAATTCTAAGTTGTT+CGG | + | chr3_2:5919398-5919417 | None:intergenic | 30.0% | |
| TTAATCTCTTAATCTCTTGC+TGG | + | chr3_2:5919451-5919470 | None:intergenic | 30.0% | |
| CAAGAGATTAAGAGATTAAG+AGG | - | chr3_2:5919452-5919471 | Msa0392680:CDS | 30.0% | |
| AAATTACCATAGGAGAACTT+CGG | - | chr3_2:5919573-5919592 | Msa0392680:intron | 30.0% | |
| !! | ATTAAATTTCTAGTTGCCCT+AGG | + | chr3_2:5919686-5919705 | None:intergenic | 30.0% |
| !!! | GGACTGTTTTAATTTCTACT+CGG | + | chr3_2:5919733-5919752 | None:intergenic | 30.0% |
| ATGAGTTTCAAGATAAGGAT+AGG | - | chr3_2:5919910-5919929 | Msa0392680:intron | 30.0% | |
| TGAGTTTCAAGATAAGGATA+GGG | - | chr3_2:5919911-5919930 | Msa0392680:intron | 30.0% | |
| ATGAGTTTCAAGATAAGGAT+AGG | - | chr3_2:5919910-5919929 | Msa0392680:intron | 30.0% | |
| TGAGTTTCAAGATAAGGATA+GGG | - | chr3_2:5919911-5919930 | Msa0392680:intron | 30.0% | |
| AAACTTGACAGTTGAGAGAT+AGG | + | chr3_2:5919359-5919378 | None:intergenic | 35.0% | |
| ! | ATTAAGAGGTTGTTACTTGC+CGG | - | chr3_2:5919466-5919485 | Msa0392680:CDS | 35.0% |
| AGAATTCTAGGTCAAGAGAT+TGG | - | chr3_2:5919490-5919509 | Msa0392680:CDS | 35.0% | |
| GAATTCTAGGTCAAGAGATT+GGG | - | chr3_2:5919491-5919510 | Msa0392680:CDS | 35.0% | |
| ! | TTAGGAGTGCAAATTACCAT+AGG | - | chr3_2:5919563-5919582 | Msa0392680:CDS | 35.0% |
| AAAAACCAATCCAATTGCCT+AGG | - | chr3_2:5919666-5919685 | Msa0392680:intron | 35.0% | |
| AAAACCAATCCAATTGCCTA+GGG | - | chr3_2:5919667-5919686 | Msa0392680:intron | 35.0% | |
| !! | CGGCAAAAGCGTTAAAATAA+AGG | + | chr3_2:5919713-5919732 | None:intergenic | 35.0% |
| AGAAATTAAAACAGTCCCTG+TGG | - | chr3_2:5919736-5919755 | Msa0392680:intron | 35.0% | |
| ! | ATAGTGAATGAGCTGTTTCA+AGG | - | chr3_2:5920153-5920172 | Msa0392680:intron | 35.0% |
| ! | TAGTGAATGAGCTGTTTCAA+GGG | - | chr3_2:5920154-5920173 | Msa0392680:intron | 35.0% |
| !! | TAATCGGTGTCAATTTGAAG+TGG | + | chr3_2:5920240-5920259 | None:intergenic | 35.0% |
| AAACTTGACAGTTGAGAGAT+AGG | + | chr3_2:5919359-5919378 | None:intergenic | 35.0% | |
| ! | ATTAAGAGGTTGTTACTTGC+CGG | - | chr3_2:5919466-5919485 | Msa0392680:CDS | 35.0% |
| AGAATTCTAGGTCAAGAGAT+TGG | - | chr3_2:5919490-5919509 | Msa0392680:CDS | 35.0% | |
| GAATTCTAGGTCAAGAGATT+GGG | - | chr3_2:5919491-5919510 | Msa0392680:CDS | 35.0% | |
| ! | TTAGGAGTGCAAATTACCAT+AGG | - | chr3_2:5919563-5919582 | Msa0392680:CDS | 35.0% |
| AAAAACCAATCCAATTGCCT+AGG | - | chr3_2:5919666-5919685 | Msa0392680:intron | 35.0% | |
| AAAACCAATCCAATTGCCTA+GGG | - | chr3_2:5919667-5919686 | Msa0392680:intron | 35.0% | |
| !! | CGGCAAAAGCGTTAAAATAA+AGG | + | chr3_2:5919713-5919732 | None:intergenic | 35.0% |
| AGAAATTAAAACAGTCCCTG+TGG | - | chr3_2:5919736-5919755 | Msa0392680:intron | 35.0% | |
| ! | ATAGTGAATGAGCTGTTTCA+AGG | - | chr3_2:5920153-5920172 | Msa0392680:intron | 35.0% |
| ! | TAGTGAATGAGCTGTTTCAA+GGG | - | chr3_2:5920154-5920173 | Msa0392680:intron | 35.0% |
| !! | TAATCGGTGTCAATTTGAAG+TGG | + | chr3_2:5920240-5920259 | None:intergenic | 35.0% |
| CATTTCATCTGTACACTCCA+TGG | - | chr3_2:5919312-5919331 | Msa0392680:CDS | 40.0% | |
| TCAACTGTCAAGTTTCGTTC+CGG | - | chr3_2:5919364-5919383 | Msa0392680:CDS | 40.0% | |
| ! | TTAAGAGGTTGTTACTTGCC+GGG | - | chr3_2:5919467-5919486 | Msa0392680:CDS | 40.0% |
| AATACTCCGAAGTTCTCCTA+TGG | + | chr3_2:5919582-5919601 | None:intergenic | 40.0% | |
| CATTTCATCTGTACACTCCA+TGG | - | chr3_2:5919312-5919331 | Msa0392680:CDS | 40.0% | |
| TCAACTGTCAAGTTTCGTTC+CGG | - | chr3_2:5919364-5919383 | Msa0392680:CDS | 40.0% | |
| ! | TTAAGAGGTTGTTACTTGCC+GGG | - | chr3_2:5919467-5919486 | Msa0392680:CDS | 40.0% |
| AATACTCCGAAGTTCTCCTA+TGG | + | chr3_2:5919582-5919601 | None:intergenic | 40.0% | |
| CAGTTGAGAGATAGGCAGAT+CGG | + | chr3_2:5919351-5919370 | None:intergenic | 45.0% | |
| !! | AAGTTGTTCGGTGTTGCTAC+CGG | + | chr3_2:5919386-5919405 | None:intergenic | 45.0% |
| TCTTGCTGGCGAATGTGAAA+CGG | + | chr3_2:5919437-5919456 | None:intergenic | 45.0% | |
| TTACTTGCCGGGAGAATTCT+AGG | - | chr3_2:5919478-5919497 | Msa0392680:CDS | 45.0% | |
| CTCTTGACCTAGAATTCTCC+CGG | + | chr3_2:5919488-5919507 | None:intergenic | 45.0% | |
| ! | TTCTAGTTGCCCTAGGCAAT+TGG | + | chr3_2:5919679-5919698 | None:intergenic | 45.0% |
| CAGTTGAGAGATAGGCAGAT+CGG | + | chr3_2:5919351-5919370 | None:intergenic | 45.0% | |
| !! | AAGTTGTTCGGTGTTGCTAC+CGG | + | chr3_2:5919386-5919405 | None:intergenic | 45.0% |
| TCTTGCTGGCGAATGTGAAA+CGG | + | chr3_2:5919437-5919456 | None:intergenic | 45.0% | |
| TTACTTGCCGGGAGAATTCT+AGG | - | chr3_2:5919478-5919497 | Msa0392680:CDS | 45.0% | |
| CTCTTGACCTAGAATTCTCC+CGG | + | chr3_2:5919488-5919507 | None:intergenic | 45.0% | |
| ! | TTCTAGTTGCCCTAGGCAAT+TGG | + | chr3_2:5919679-5919698 | None:intergenic | 45.0% |
| TAGGCAGATCGGAAGGAGAA+GGG | + | chr3_2:5919340-5919359 | None:intergenic | 50.0% | |
| ATAGGCAGATCGGAAGGAGA+AGG | + | chr3_2:5919341-5919360 | None:intergenic | 50.0% | |
| TGAGAGATAGGCAGATCGGA+AGG | + | chr3_2:5919347-5919366 | None:intergenic | 50.0% | |
| GAATTCATGTCCTCTCCCGA+CGG | - | chr3_2:5919407-5919426 | Msa0392680:CDS | 50.0% | |
| AATGTGAAACGGAGCTCCGT+CGG | + | chr3_2:5919426-5919445 | None:intergenic | 50.0% | |
| GTTGCCCTAGGCAATTGGAT+TGG | + | chr3_2:5919674-5919693 | None:intergenic | 50.0% | |
| TAGGCAGATCGGAAGGAGAA+GGG | + | chr3_2:5919340-5919359 | None:intergenic | 50.0% | |
| ATAGGCAGATCGGAAGGAGA+AGG | + | chr3_2:5919341-5919360 | None:intergenic | 50.0% | |
| TGAGAGATAGGCAGATCGGA+AGG | + | chr3_2:5919347-5919366 | None:intergenic | 50.0% | |
| GAATTCATGTCCTCTCCCGA+CGG | - | chr3_2:5919407-5919426 | Msa0392680:CDS | 50.0% | |
| AATGTGAAACGGAGCTCCGT+CGG | + | chr3_2:5919426-5919445 | None:intergenic | 50.0% | |
| GTTGCCCTAGGCAATTGGAT+TGG | + | chr3_2:5919674-5919693 | None:intergenic | 50.0% | |
| ATGTGAAACGGAGCTCCGTC+GGG | + | chr3_2:5919425-5919444 | None:intergenic | 55.0% | |
| ATGTGAAACGGAGCTCCGTC+GGG | + | chr3_2:5919425-5919444 | None:intergenic | 55.0% | |
| TCGGAAGGAGAAGGGAGCCA+TGG | + | chr3_2:5919332-5919351 | None:intergenic | 60.0% | |
| TCGGAAGGAGAAGGGAGCCA+TGG | + | chr3_2:5919332-5919351 | None:intergenic | 60.0% | |
| AAACGGAGCTCCGTCGGGAG+AGG | + | chr3_2:5919420-5919439 | None:intergenic | 65.0% | |
| AAACGGAGCTCCGTCGGGAG+AGG | + | chr3_2:5919420-5919439 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 5919300 | 5920260 | 5919300 | ID=Msa0392680;Name=Msa0392680 |
| chr3_2 | mRNA | 5919300 | 5920260 | 5919300 | ID=Msa0392680-mRNA-1;Parent=Msa0392680;Name=Msa0392680-mRNA-1;_AED=0.61;_eAED=0.60;_QI=0|0|0|0.5|1|1|2|0|124 |
| chr3_2 | exon | 5920175 | 5920260 | 5920175 | ID=Msa0392680-mRNA-1:exon:1537;Parent=Msa0392680-mRNA-1 |
| chr3_2 | exon | 5919300 | 5919588 | 5919300 | ID=Msa0392680-mRNA-1:exon:1536;Parent=Msa0392680-mRNA-1 |
| chr3_2 | CDS | 5920175 | 5920260 | 5920175 | ID=Msa0392680-mRNA-1:cds;Parent=Msa0392680-mRNA-1 |
| chr3_2 | CDS | 5919300 | 5919588 | 5919300 | ID=Msa0392680-mRNA-1:cds;Parent=Msa0392680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
