Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392690 | XP_039688272.1 | 93.177 | 469 | 32 | 0 | 1 | 469 | 1 | 469 | 0.0 | 881 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392690 | sp|O04539|SNL4_ARATH | 51.948 | 77 | 36 | 1 | 2 | 78 | 8 | 83 | 2.87e-14 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392690 | G7J085 | 93.177 | 469 | 32 | 0 | 1 | 469 | 1 | 469 | 0.0 | 881 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0392690 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392690 | MtrunA17_Chr3g0077801 | 94.034 | 352 | 21 | 0 | 118 | 469 | 1 | 352 | 0.0 | 692 |
| Msa0392690 | MtrunA17_Chr3g0077901 | 68.750 | 352 | 110 | 0 | 114 | 465 | 17 | 368 | 0.0 | 514 |
| Msa0392690 | MtrunA17_Chr3g0077851 | 72.590 | 332 | 91 | 0 | 134 | 465 | 1 | 332 | 2.47e-180 | 507 |
| Msa0392690 | MtrunA17_Chr4g0075971 | 58.553 | 456 | 158 | 5 | 11 | 466 | 175 | 599 | 3.88e-173 | 499 |
| Msa0392690 | MtrunA17_Chr4g0075971 | 33.824 | 136 | 80 | 3 | 6 | 141 | 10 | 135 | 2.38e-12 | 69.3 |
| Msa0392690 | MtrunA17_Chr6g0488101 | 47.095 | 482 | 209 | 10 | 1 | 466 | 1 | 452 | 6.57e-141 | 412 |
| Msa0392690 | MtrunA17_Chr6g0488271 | 48.526 | 441 | 189 | 8 | 35 | 466 | 1 | 412 | 1.88e-135 | 396 |
| Msa0392690 | MtrunA17_Chr3g0112311 | 56.111 | 360 | 145 | 4 | 118 | 468 | 1 | 356 | 1.19e-130 | 382 |
| Msa0392690 | MtrunA17_Chr7g0252101 | 48.268 | 462 | 185 | 10 | 11 | 466 | 16 | 429 | 1.46e-126 | 374 |
| Msa0392690 | MtrunA17_Chr3g0093911 | 55.807 | 353 | 146 | 5 | 118 | 466 | 1 | 347 | 1.49e-123 | 363 |
| Msa0392690 | MtrunA17_Chr1g0207351 | 55.775 | 355 | 140 | 6 | 122 | 466 | 16 | 363 | 1.26e-120 | 357 |
| Msa0392690 | MtrunA17_Chr7g0243331 | 55.523 | 344 | 149 | 4 | 124 | 466 | 7 | 347 | 2.09e-120 | 355 |
| Msa0392690 | MtrunA17_Chr6g0452641 | 56.169 | 308 | 123 | 3 | 168 | 466 | 33 | 337 | 2.99e-105 | 317 |
| Msa0392690 | MtrunA17_Chr1g0209051 | 57.090 | 268 | 107 | 3 | 203 | 466 | 5 | 268 | 3.23e-94 | 286 |
| Msa0392690 | MtrunA17_Chr3g0122991 | 47.040 | 321 | 110 | 4 | 123 | 433 | 5 | 275 | 5.18e-90 | 275 |
| Msa0392690 | MtrunA17_Chr3g0123471 | 56.274 | 263 | 109 | 4 | 200 | 461 | 2 | 259 | 9.87e-86 | 263 |
| Msa0392690 | MtrunA17_Chr7g0243391 | 51.402 | 214 | 102 | 1 | 114 | 327 | 14 | 225 | 7.53e-60 | 196 |
| Msa0392690 | MtrunA17_Chr3g0077811 | 90.435 | 115 | 11 | 0 | 1 | 115 | 6 | 120 | 1.10e-57 | 186 |
| Msa0392690 | MtrunA17_Chr4g0075861 | 52.315 | 216 | 75 | 2 | 23 | 238 | 186 | 373 | 1.81e-57 | 194 |
| Msa0392690 | MtrunA17_Chr4g0075861 | 35.115 | 131 | 75 | 3 | 6 | 136 | 10 | 130 | 1.29e-11 | 66.2 |
| Msa0392690 | MtrunA17_Chr1g0202841 | 54.237 | 177 | 77 | 2 | 293 | 466 | 1 | 176 | 1.45e-55 | 182 |
| Msa0392690 | MtrunA17_Chr6g0486591 | 51.923 | 156 | 66 | 3 | 320 | 466 | 1 | 156 | 2.13e-45 | 155 |
| Msa0392690 | MtrunA17_Chr3g0077881 | 74.490 | 98 | 24 | 1 | 1 | 97 | 1 | 98 | 7.16e-43 | 149 |
| Msa0392690 | MtrunA17_Chr3g0077881 | 39.286 | 112 | 38 | 1 | 4 | 115 | 95 | 176 | 9.85e-13 | 66.6 |
| Msa0392690 | MtrunA17_Chr1g0196231 | 52.632 | 152 | 67 | 3 | 110 | 260 | 219 | 366 | 1.09e-42 | 154 |
| Msa0392690 | MtrunA17_Chr3g0077891 | 75.510 | 98 | 23 | 1 | 1 | 97 | 1 | 98 | 2.74e-39 | 140 |
| Msa0392690 | MtrunA17_Chr3g0077891 | 41.071 | 112 | 36 | 1 | 4 | 115 | 95 | 176 | 8.91e-15 | 72.4 |
| Msa0392690 | MtrunA17_Chr3g0077941 | 74.227 | 97 | 25 | 0 | 1 | 97 | 1 | 97 | 7.43e-37 | 133 |
| Msa0392690 | MtrunA17_Chr3g0077941 | 41.964 | 112 | 35 | 1 | 4 | 115 | 94 | 175 | 9.78e-16 | 75.1 |
| Msa0392690 | MtrunA17_Chr1g0187941 | 51.852 | 135 | 62 | 1 | 293 | 424 | 1 | 135 | 6.08e-35 | 127 |
| Msa0392690 | MtrunA17_Chr1g0206951 | 52.212 | 113 | 53 | 1 | 121 | 232 | 2 | 114 | 1.96e-31 | 117 |
| Msa0392690 | MtrunA17_Chr3g0077911 | 62.921 | 89 | 29 | 1 | 1 | 89 | 1 | 85 | 9.09e-28 | 108 |
| Msa0392690 | MtrunA17_Chr3g0077911 | 47.945 | 73 | 38 | 0 | 2 | 74 | 84 | 156 | 7.55e-13 | 66.2 |
| Msa0392690 | MtrunA17_Chr1g0209191 | 54.167 | 96 | 40 | 1 | 375 | 466 | 1 | 96 | 1.75e-27 | 105 |
| Msa0392690 | MtrunA17_Chr7g0238781 | 42.537 | 134 | 75 | 2 | 150 | 283 | 27 | 158 | 1.05e-26 | 105 |
| Msa0392690 | MtrunA17_Chr6g0459061 | 27.119 | 295 | 207 | 5 | 130 | 422 | 22 | 310 | 2.18e-26 | 109 |
| Msa0392690 | MtrunA17_Chr1g0196241 | 69.444 | 72 | 21 | 1 | 366 | 436 | 3 | 74 | 1.79e-25 | 99.8 |
| Msa0392690 | MtrunA17_Chr3g0077861 | 60.674 | 89 | 31 | 1 | 1 | 89 | 1 | 85 | 2.07e-25 | 102 |
| Msa0392690 | MtrunA17_Chr3g0077861 | 47.945 | 73 | 38 | 0 | 2 | 74 | 84 | 156 | 5.06e-13 | 67.0 |
| Msa0392690 | MtrunA17_Chr1g0205811 | 52.809 | 89 | 39 | 2 | 3 | 91 | 9 | 94 | 2.45e-21 | 89.4 |
| Msa0392690 | MtrunA17_Chr1g0205821 | 51.765 | 85 | 38 | 2 | 6 | 90 | 11 | 92 | 5.40e-18 | 81.6 |
| Msa0392690 | MtrunA17_Chr1g0205821 | 44.156 | 77 | 42 | 1 | 7 | 83 | 98 | 173 | 4.14e-12 | 64.7 |
| Msa0392690 | MtrunA17_Chr8g0364231 | 52.500 | 80 | 37 | 1 | 2 | 81 | 36 | 114 | 7.53e-16 | 80.9 |
| Msa0392690 | MtrunA17_Chr1g0205801 | 54.412 | 68 | 29 | 1 | 24 | 91 | 27 | 92 | 1.12e-15 | 73.2 |
| Msa0392690 | MtrunA17_Chr1g0205861 | 40.449 | 89 | 52 | 1 | 2 | 90 | 10 | 97 | 1.74e-15 | 72.8 |
| Msa0392690 | MtrunA17_Chr5g0415031 | 53.247 | 77 | 35 | 1 | 2 | 78 | 37 | 112 | 1.88e-15 | 79.3 |
| Msa0392690 | MtrunA17_Chr1g0206781 | 46.067 | 89 | 46 | 2 | 2 | 90 | 5 | 91 | 9.45e-15 | 70.5 |
| Msa0392690 | MtrunA17_Chr1g0209061 | 57.407 | 54 | 22 | 1 | 105 | 157 | 54 | 107 | 2.05e-14 | 69.3 |
| Msa0392690 | MtrunA17_Chr1g0206771 | 50.704 | 71 | 34 | 1 | 6 | 76 | 93 | 162 | 3.20e-14 | 70.9 |
| Msa0392690 | MtrunA17_Chr6g0452001 | 45.783 | 83 | 44 | 1 | 2 | 84 | 57 | 138 | 2.58e-13 | 72.8 |
| Msa0392690 | MtrunA17_Chr1g0205831 | 44.828 | 87 | 46 | 2 | 14 | 100 | 79 | 163 | 9.50e-13 | 66.6 |
| Msa0392690 | MtrunA17_Chr1g0205831 | 50.000 | 56 | 28 | 0 | 23 | 78 | 16 | 71 | 4.31e-11 | 61.6 |
| Msa0392690 | MtrunA17_Chr7g0218891 | 41.558 | 77 | 44 | 1 | 8 | 83 | 185 | 261 | 1.52e-12 | 67.8 |
| Msa0392690 | MtrunA17_Chr8g0364021 | 48.052 | 77 | 39 | 1 | 2 | 78 | 38 | 113 | 3.05e-12 | 66.2 |
| Msa0392690 | MtrunA17_Chr2g0328701 | 39.583 | 96 | 53 | 2 | 6 | 101 | 27 | 117 | 1.09e-11 | 62.0 |
| Msa0392690 | MtrunA17_Chr6g0452021 | 42.500 | 80 | 45 | 1 | 2 | 81 | 37 | 115 | 9.06e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392690 | AT5G15025.1 | 47.059 | 85 | 40 | 2 | 4 | 88 | 43 | 122 | 1.77e-15 | 73.2 |
| Msa0392690 | AT1G70060.2 | 51.948 | 77 | 36 | 1 | 2 | 78 | 8 | 83 | 2.91e-15 | 79.3 |
| Msa0392690 | AT1G70060.1 | 51.948 | 77 | 36 | 1 | 2 | 78 | 8 | 83 | 2.91e-15 | 79.3 |
| Msa0392690 | AT1G24190.3 | 48.052 | 77 | 39 | 1 | 2 | 78 | 8 | 83 | 4.88e-14 | 75.5 |
| Msa0392690 | AT1G24190.1 | 48.052 | 77 | 39 | 1 | 2 | 78 | 8 | 83 | 5.05e-14 | 75.5 |
| Msa0392690 | AT1G24190.2 | 48.052 | 77 | 39 | 1 | 2 | 78 | 8 | 83 | 5.09e-14 | 75.5 |
| Msa0392690 | AT3G01320.1 | 48.193 | 83 | 41 | 2 | 2 | 84 | 51 | 131 | 2.80e-13 | 73.2 |
| Msa0392690 | AT3G01320.2 | 48.193 | 83 | 41 | 2 | 2 | 84 | 51 | 131 | 2.90e-13 | 72.8 |
| Msa0392690 | AT1G24200.1 | 50.000 | 72 | 35 | 1 | 5 | 76 | 11 | 81 | 1.43e-12 | 67.0 |
| Msa0392690 | AT1G70030.3 | 44.444 | 81 | 44 | 1 | 2 | 82 | 16 | 95 | 1.49e-12 | 65.1 |
| Msa0392690 | AT1G59890.2 | 50.704 | 71 | 34 | 1 | 8 | 78 | 45 | 114 | 1.79e-12 | 70.5 |
| Msa0392690 | AT1G59890.1 | 50.704 | 71 | 34 | 1 | 8 | 78 | 45 | 114 | 1.81e-12 | 70.5 |
| Msa0392690 | AT1G59890.3 | 50.704 | 71 | 34 | 1 | 8 | 78 | 45 | 114 | 1.88e-12 | 70.5 |
| Msa0392690 | AT1G59890.4 | 50.704 | 71 | 34 | 1 | 8 | 78 | 45 | 114 | 1.91e-12 | 70.5 |
| Msa0392690 | AT5G15020.1 | 46.753 | 77 | 40 | 1 | 2 | 78 | 46 | 121 | 3.70e-12 | 69.3 |
| Msa0392690 | AT5G15020.2 | 46.753 | 77 | 40 | 1 | 2 | 78 | 46 | 121 | 4.07e-12 | 69.3 |
| Msa0392690 | AT1G70030.2 | 44.444 | 81 | 44 | 1 | 2 | 82 | 16 | 95 | 5.29e-12 | 63.9 |
| Msa0392690 | AT1G70030.1 | 44.444 | 81 | 44 | 1 | 2 | 82 | 5 | 84 | 8.90e-12 | 63.5 |
| Msa0392690 | AT1G24230.1 | 44.928 | 69 | 38 | 0 | 5 | 73 | 11 | 79 | 3.38e-11 | 63.9 |
| Msa0392690 | AT1G10450.3 | 49.296 | 71 | 35 | 1 | 8 | 78 | 84 | 153 | 6.41e-11 | 65.5 |
| Msa0392690 | AT1G10450.2 | 49.296 | 71 | 35 | 1 | 8 | 78 | 33 | 102 | 7.15e-11 | 65.5 |
| Msa0392690 | AT1G10450.1 | 49.296 | 71 | 35 | 1 | 8 | 78 | 33 | 102 | 7.15e-11 | 65.5 |
Find 87 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGGTACTTTGCCTATTT+TGG | 0.087252 | 3_2:-5922957 | Msa0392690:CDS |
| ACCTTCTTTCTTCTTGTAAA+TGG | 0.145840 | 3_2:+5922876 | None:intergenic |
| TGTCTACCAGTCTCGAAATT+TGG | 0.157460 | 3_2:-5922730 | Msa0392690:CDS |
| TTATGTCAAGCTGGAAATTT+TGG | 0.174105 | 3_2:-5922436 | Msa0392690:CDS |
| ATATGTAGATTTGACTTTAA+AGG | 0.188583 | 3_2:+5922839 | None:intergenic |
| CTATCATGCTTAATGTATTT+TGG | 0.196702 | 3_2:+5922267 | None:intergenic |
| TACCATGTCTTACTTGCTTT+TGG | 0.226717 | 3_2:-5922810 | Msa0392690:CDS |
| GAGAGTTTCATAAAACTTAC+TGG | 0.286722 | 3_2:-5923100 | Msa0392690:CDS |
| ATTATCTTCTATGTTATTCA+TGG | 0.297170 | 3_2:+5923214 | None:intergenic |
| CTCTCCCTTGATGATGCATT+AGG | 0.309761 | 3_2:-5925032 | Msa0392690:CDS |
| ACAACATGTAAAGTGTGTTT+AGG | 0.310726 | 3_2:-5922306 | Msa0392690:CDS |
| GTCACTTCATGTAAAAGTTC+TGG | 0.310927 | 3_2:-5922762 | Msa0392690:CDS |
| ATCTCAAAATTAAATCTTCA+TGG | 0.311366 | 3_2:+5924868 | None:intergenic |
| TCAAGCATATCCCAGGAAAA+TGG | 0.331332 | 3_2:+5923188 | None:intergenic |
| CAACATGTAAAGTGTGTTTA+GGG | 0.332853 | 3_2:-5922305 | Msa0392690:CDS |
| TTCCAGCTTGACATAATTCA+TGG | 0.337406 | 3_2:+5922443 | None:intergenic |
| GTCTACCAGTCTCGAAATTT+GGG | 0.340150 | 3_2:-5922729 | Msa0392690:CDS |
| TCAGCATTAAAATGTAAGTT+TGG | 0.340713 | 3_2:-5925002 | Msa0392690:CDS |
| TTTAATAACTAATGGTTCTT+GGG | 0.345665 | 3_2:+5923061 | None:intergenic |
| TTTCTTGCGTGTGCAAGAAT+TGG | 0.355227 | 3_2:-5923124 | Msa0392690:CDS |
| CGAAGACGATCAATCAATTC+TGG | 0.363197 | 3_2:-5922974 | Msa0392690:CDS |
| TCTCCCTTGATGATGCATTA+GGG | 0.364954 | 3_2:-5925031 | Msa0392690:CDS |
| TCCGCTAGAACATCCAAAAT+AGG | 0.372084 | 3_2:+5922944 | None:intergenic |
| ATTAAGAGTGTACGAGTTGT+TGG | 0.382597 | 3_2:-5924895 | Msa0392690:CDS |
| AAAGGAAAATGCCTACTTGC+TGG | 0.383831 | 3_2:-5922229 | Msa0392690:CDS |
| CAATAACCATATTACTCATC+TGG | 0.417196 | 3_2:+5922165 | None:intergenic |
| TTTCAAAACCCCACCTCCTC+GGG | 0.423293 | 3_2:+5922361 | None:intergenic |
| TACATTAAGCATGATAGAAC+TGG | 0.424208 | 3_2:-5922261 | Msa0392690:CDS |
| GTAAGTTTGGATATGAGAAA+AGG | 0.430304 | 3_2:-5924989 | Msa0392690:CDS |
| TGGGTTACATATTTAACAAT+GGG | 0.431533 | 3_2:-5922705 | Msa0392690:CDS |
| TAAGTTTGGATATGAGAAAA+GGG | 0.432227 | 3_2:-5924988 | Msa0392690:CDS |
| AGGAAAAGAATTTCTTATCA+TGG | 0.433315 | 3_2:+5923030 | None:intergenic |
| CTTTCAAAACCCCACCTCCT+CGG | 0.433713 | 3_2:+5922360 | None:intergenic |
| TAAACACACTTTACATGTTG+TGG | 0.439177 | 3_2:+5922308 | None:intergenic |
| AGTTTGATTTCATATTTAGT+TGG | 0.445957 | 3_2:+5924831 | None:intergenic |
| GTCATCGAAATCTAGATCTC+TGG | 0.451722 | 3_2:+5923157 | None:intergenic |
| CCAGTCTCGAAATTTGGGTT+GGG | 0.453525 | 3_2:-5922724 | Msa0392690:CDS |
| ACCAGTCTCGAAATTTGGGT+TGG | 0.462558 | 3_2:-5922725 | Msa0392690:CDS |
| TTCATATTTAGTTGGCAAGA+AGG | 0.469109 | 3_2:+5924839 | None:intergenic |
| ATATGAAATCAAACTTCCAT+TGG | 0.479714 | 3_2:-5924823 | Msa0392690:CDS |
| CATTAAGCAACCCGAGGAGG+TGG | 0.481751 | 3_2:-5922371 | Msa0392690:CDS |
| AAAATGCCTACTTGCTGGAT+TGG | 0.490737 | 3_2:-5922224 | Msa0392690:CDS |
| ACAAAGTCAACAACCTTCCA+TGG | 0.493618 | 3_2:+5922678 | None:intergenic |
| ATAAGGTTGGTTTGCTGTGA+TGG | 0.496285 | 3_2:-5922531 | Msa0392690:CDS |
| TCCATTTACAAGAAGAAAGA+AGG | 0.500617 | 3_2:-5922877 | Msa0392690:CDS |
| AACCATGAATTATGTCAAGC+TGG | 0.505920 | 3_2:-5922445 | Msa0392690:CDS |
| GTAAACATTCAATATTTCCT+CGG | 0.507049 | 3_2:+5922482 | None:intergenic |
| TCGGTCAGCTATGCTGATGA+AGG | 0.509137 | 3_2:+5923010 | None:intergenic |
| GTCACCAACGAGGCCATCAT+AGG | 0.512536 | 3_2:-5922630 | Msa0392690:CDS |
| ACAAATTATGAAGGATTACA+AGG | 0.516015 | 3_2:-5924946 | Msa0392690:CDS |
| AATCACACCTTCAGTTCAGC+TGG | 0.522086 | 3_2:-5924727 | Msa0392690:CDS |
| TTGGGTTACATATTTAACAA+TGG | 0.523800 | 3_2:-5922706 | Msa0392690:CDS |
| AGCGGATATTTGATCATGAA+AGG | 0.524945 | 3_2:-5922927 | Msa0392690:CDS |
| TAACATCTACGTCACACATA+AGG | 0.525444 | 3_2:-5922548 | Msa0392690:CDS |
| CTTTAGACATCAACAATATG+AGG | 0.534921 | 3_2:-5922199 | Msa0392690:CDS |
| GGCTGAAAGAATTGATGCTA+GGG | 0.536935 | 3_2:-5924925 | Msa0392690:CDS |
| CAAGTCGAGTACACCTATGA+TGG | 0.537478 | 3_2:+5922617 | None:intergenic |
| AGGCTGAAAGAATTGATGCT+AGG | 0.540522 | 3_2:-5924926 | Msa0392690:CDS |
| TGTTGTGGATGAAAGATTGA+TGG | 0.544678 | 3_2:+5922323 | None:intergenic |
| ATTTAACAATGGGAAATCCA+TGG | 0.556723 | 3_2:-5922695 | Msa0392690:CDS |
| TGTAAAGTGTGTTTAGGGGA+TGG | 0.561432 | 3_2:-5922300 | Msa0392690:CDS |
| CCCAACCCAAATTTCGAGAC+TGG | 0.567031 | 3_2:+5922724 | None:intergenic |
| TACACCTATGATGGCCTCGT+TGG | 0.570402 | 3_2:+5922626 | None:intergenic |
| TTAACCCTAATGCATCATCA+AGG | 0.572182 | 3_2:+5925027 | None:intergenic |
| ATTAAGCAACCCGAGGAGGT+GGG | 0.573474 | 3_2:-5922370 | Msa0392690:CDS |
| AATGACATCAAGCATATCCC+AGG | 0.580022 | 3_2:+5923181 | None:intergenic |
| AGTGGTTCATATTGAGTCCG+AGG | 0.581618 | 3_2:-5922499 | Msa0392690:CDS |
| CCAGTGTCCAGCTGAACTGA+AGG | 0.581775 | 3_2:+5924720 | None:intergenic |
| TTAAGCAACCCGAGGAGGTG+GGG | 0.582734 | 3_2:-5922369 | Msa0392690:CDS |
| CCTTCAGTTCAGCTGGACAC+TGG | 0.584057 | 3_2:-5924720 | Msa0392690:intron |
| AACAATGGGAAATCCATGGA+AGG | 0.592110 | 3_2:-5922691 | Msa0392690:CDS |
| ATCTACGTCACACATAAGGT+TGG | 0.593425 | 3_2:-5922544 | Msa0392690:CDS |
| TGTGACGTAGATGTTACATC+GGG | 0.594601 | 3_2:+5922555 | None:intergenic |
| ACACGCAAGAAAATTGAAAG+AGG | 0.594871 | 3_2:+5923135 | None:intergenic |
| TTATCGTCATCACGATCCAA+TGG | 0.595772 | 3_2:+5924807 | None:intergenic |
| TAACCCTAATGCATCATCAA+GGG | 0.615763 | 3_2:+5925028 | None:intergenic |
| GTGTGACGTAGATGTTACAT+CGG | 0.619655 | 3_2:+5922554 | None:intergenic |
| AAAGCACCAATCCAGCAAGT+AGG | 0.620337 | 3_2:+5922218 | None:intergenic |
| GACGATAATGAAGAACAAGA+TGG | 0.621555 | 3_2:-5924792 | Msa0392690:CDS |
| AGAGTGTACGAGTTGTTGGA+CGG | 0.625456 | 3_2:-5924891 | Msa0392690:CDS |
| TAGACATCAACAATATGAGG+TGG | 0.627468 | 3_2:-5922196 | Msa0392690:CDS |
| TAGAACTGGAGTTCCTCCAA+AGG | 0.630462 | 3_2:-5922247 | Msa0392690:CDS |
| TGCCAAAAGCAAGTAAGACA+TGG | 0.647599 | 3_2:+5922808 | None:intergenic |
| ATGCATTAAGCAACCCGAGG+AGG | 0.659441 | 3_2:-5922374 | Msa0392690:CDS |
| AACATGTAAAGTGTGTTTAG+GGG | 0.701783 | 3_2:-5922304 | Msa0392690:CDS |
| TCTATGCATTAAGCAACCCG+AGG | 0.733912 | 3_2:-5922377 | Msa0392690:CDS |
| TATATATGTTGTCACCAACG+AGG | 0.759362 | 3_2:-5922640 | Msa0392690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAAATTTCAATCTTA+GGG | + | chr3_2:5922888-5922907 | None:intergenic | 10.0% |
| !! | TATTATTAAATTTCAATCTT+AGG | + | chr3_2:5922889-5922908 | None:intergenic | 10.0% |
| !! | ATTGAAATTTAATAATAGAA+AGG | - | chr3_2:5922892-5922911 | Msa0392690:CDS | 10.0% |
| !!! | TTCTAAAAAATTTATATTTG+AGG | + | chr3_2:5924630-5924649 | None:intergenic | 10.0% |
| !!! | TAAGACTTTTTAATAACTAA+TGG | + | chr3_2:5924167-5924186 | None:intergenic | 15.0% |
| !!! | ATCTTTTCTACAAATTATGA+AGG | - | chr3_2:5922262-5922281 | Msa0392690:CDS | 20.0% |
| !! | ATCTCAAAATTAAATCTTCA+TGG | + | chr3_2:5922352-5922371 | None:intergenic | 20.0% |
| !!! | AGTTTGATTTCATATTTAGT+TGG | + | chr3_2:5922389-5922408 | None:intergenic | 20.0% |
| !! | GAGTACTAAAAAAATGATTA+GGG | - | chr3_2:5923370-5923389 | Msa0392690:intron | 20.0% |
| !! | AGTACTAAAAAAATGATTAG+GGG | - | chr3_2:5923371-5923390 | Msa0392690:intron | 20.0% |
| !!! | ATAGTTTATTATCCCATTTT+CGG | + | chr3_2:5923797-5923816 | None:intergenic | 20.0% |
| !! | AACTATTCACATTAAAATGT+TGG | - | chr3_2:5923811-5923830 | Msa0392690:intron | 20.0% |
| !! | ATTATATTCCCAAACAAAAA+TGG | + | chr3_2:5923840-5923859 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTGGGAATATAA+TGG | - | chr3_2:5923839-5923858 | Msa0392690:intron | 20.0% |
| !!! | TTTTTGTTTGGGAATATAAT+GGG | - | chr3_2:5923840-5923859 | Msa0392690:intron | 20.0% |
| !! | ATTATCTTCTATGTTATTCA+TGG | + | chr3_2:5924006-5924025 | None:intergenic | 20.0% |
| !! | TTTAATAACTAATGGTTCTT+GGG | + | chr3_2:5924159-5924178 | None:intergenic | 20.0% |
| !!! | TTTTAATAACTAATGGTTCT+TGG | + | chr3_2:5924160-5924179 | None:intergenic | 20.0% |
| !!! | ATATGTAGATTTGACTTTAA+AGG | + | chr3_2:5924381-5924400 | None:intergenic | 20.0% |
| ! | TCAGCATTAAAATGTAAGTT+TGG | - | chr3_2:5922215-5922234 | Msa0392690:CDS | 25.0% |
| ! | TAAGTTTGGATATGAGAAAA+GGG | - | chr3_2:5922229-5922248 | Msa0392690:CDS | 25.0% |
| ! | ACAAATTATGAAGGATTACA+AGG | - | chr3_2:5922271-5922290 | Msa0392690:CDS | 25.0% |
| ! | ATATGAAATCAAACTTCCAT+TGG | - | chr3_2:5922394-5922413 | Msa0392690:CDS | 25.0% |
| !!! | ACAAGTTGATGTTATATCTT+TGG | - | chr3_2:5922989-5923008 | Msa0392690:CDS | 25.0% |
| !! | ATCTTTGGAGAATTAAAAGT+AGG | - | chr3_2:5923004-5923023 | Msa0392690:CDS | 25.0% |
| !! | TCTTTGGAGAATTAAAAGTA+GGG | - | chr3_2:5923005-5923024 | Msa0392690:CDS | 25.0% |
| !! | TTCATGCATTTTATGTCTAT+AGG | - | chr3_2:5923036-5923055 | Msa0392690:CDS | 25.0% |
| ! | AGATAAAATAGAGAATCCTA+TGG | + | chr3_2:5923204-5923223 | None:intergenic | 25.0% |
| !! | TAGTTGATGTAACAAAGATA+TGG | - | chr3_2:5923333-5923352 | Msa0392690:intron | 25.0% |
| !! | GGAGTACTAAAAAAATGATT+AGG | - | chr3_2:5923369-5923388 | Msa0392690:intron | 25.0% |
| ! | AGTTGGAAAACAATAAAAGA+GGG | + | chr3_2:5923512-5923531 | None:intergenic | 25.0% |
| ! | TACACTTTCAATAGCAATAT+AGG | + | chr3_2:5923582-5923601 | None:intergenic | 25.0% |
| ! | AATATTTCTTTCGACCTATT+CGG | - | chr3_2:5923642-5923661 | Msa0392690:intron | 25.0% |
| ! | ATGTTTCAATTGCTATACAT+TGG | - | chr3_2:5923764-5923783 | Msa0392690:intron | 25.0% |
| !! | TAGTTTATTATCCCATTTTC+GGG | + | chr3_2:5923796-5923815 | None:intergenic | 25.0% |
| ! | AACTTACTGGAAAAAATTCT+TGG | - | chr3_2:5924130-5924149 | Msa0392690:intron | 25.0% |
| ! | AGGAAAAGAATTTCTTATCA+TGG | + | chr3_2:5924190-5924209 | None:intergenic | 25.0% |
| ! | TTGGGTTACATATTTAACAA+TGG | - | chr3_2:5924511-5924530 | Msa0392690:intron | 25.0% |
| ! | TGGGTTACATATTTAACAAT+GGG | - | chr3_2:5924512-5924531 | Msa0392690:intron | 25.0% |
| ! | GTAAACATTCAATATTTCCT+CGG | + | chr3_2:5924738-5924757 | None:intergenic | 25.0% |
| !! | CTATCATGCTTAATGTATTT+TGG | + | chr3_2:5924953-5924972 | None:intergenic | 25.0% |
| GTAAGTTTGGATATGAGAAA+AGG | - | chr3_2:5922228-5922247 | Msa0392690:CDS | 30.0% | |
| TTCATATTTAGTTGGCAAGA+AGG | + | chr3_2:5922381-5922400 | None:intergenic | 30.0% | |
| ATGTCAAGTAGAATAATGGT+AGG | + | chr3_2:5922530-5922549 | None:intergenic | 30.0% | |
| ACACATGTCAAGTAGAATAA+TGG | + | chr3_2:5922534-5922553 | None:intergenic | 30.0% | |
| TGACAGATTATAGCAAAAAG+CGG | + | chr3_2:5922658-5922677 | None:intergenic | 30.0% | |
| AGAAGTGAGTGTAAGATTAA+GGG | - | chr3_2:5922731-5922750 | Msa0392690:CDS | 30.0% | |
| CTCATAGTTTAACGATAAGT+TGG | - | chr3_2:5922790-5922809 | Msa0392690:CDS | 30.0% | |
| !! | TAGTTTAACGATAAGTTGGT+AGG | - | chr3_2:5922794-5922813 | Msa0392690:CDS | 30.0% |
| !! | AGTTTAACGATAAGTTGGTA+GGG | - | chr3_2:5922795-5922814 | Msa0392690:CDS | 30.0% |
| TTAGGGGAAATCTTGTAAAT+TGG | - | chr3_2:5922829-5922848 | Msa0392690:CDS | 30.0% | |
| ! | ATAATAGAAAGGTACACGAT+TGG | - | chr3_2:5922903-5922922 | Msa0392690:CDS | 30.0% |
| ! | CTTTGGAGAATTAAAAGTAG+GGG | - | chr3_2:5923006-5923025 | Msa0392690:CDS | 30.0% |
| ATATGACATTGATCAACCAT+AGG | - | chr3_2:5923185-5923204 | Msa0392690:CDS | 30.0% | |
| TGATGTAACAAAGATATGGA+AGG | - | chr3_2:5923337-5923356 | Msa0392690:intron | 30.0% | |
| ! | AGATATGGAAGGTATATCTT+TGG | - | chr3_2:5923348-5923367 | Msa0392690:intron | 30.0% |
| ACTTAATTCCAAAGTTTCAG+AGG | + | chr3_2:5923454-5923473 | None:intergenic | 30.0% | |
| GAGTTGGAAAACAATAAAAG+AGG | + | chr3_2:5923513-5923532 | None:intergenic | 30.0% | |
| ! | AAGATAATTGTCCATTTTCC+TGG | - | chr3_2:5924018-5924037 | Msa0392690:intron | 30.0% |
| ! | AGATAATTGTCCATTTTCCT+GGG | - | chr3_2:5924019-5924038 | Msa0392690:intron | 30.0% |
| GAGAGTTTCATAAAACTTAC+TGG | - | chr3_2:5924117-5924136 | Msa0392690:intron | 30.0% | |
| ! | TCTTCGAGTGATAAACTTTT+CGG | + | chr3_2:5924229-5924248 | None:intergenic | 30.0% |
| TCCATTTACAAGAAGAAAGA+AGG | - | chr3_2:5924340-5924359 | Msa0392690:intron | 30.0% | |
| ACCTTCTTTCTTCTTGTAAA+TGG | + | chr3_2:5924344-5924363 | None:intergenic | 30.0% | |
| ATTTAACAATGGGAAATCCA+TGG | - | chr3_2:5924522-5924541 | Msa0392690:intron | 30.0% | |
| ! | TTATGTCAAGCTGGAAATTT+TGG | - | chr3_2:5924781-5924800 | Msa0392690:CDS | 30.0% |
| ! | TATGTCAAGCTGGAAATTTT+GGG | - | chr3_2:5924782-5924801 | Msa0392690:CDS | 30.0% |
| !!! | CATTGCCTTATTTTATGCTT+CGG | - | chr3_2:5924808-5924827 | Msa0392690:CDS | 30.0% |
| !!! | ATTGCCTTATTTTATGCTTC+GGG | - | chr3_2:5924809-5924828 | Msa0392690:CDS | 30.0% |
| TAAACACACTTTACATGTTG+TGG | + | chr3_2:5924912-5924931 | None:intergenic | 30.0% | |
| ACAACATGTAAAGTGTGTTT+AGG | - | chr3_2:5924911-5924930 | Msa0392690:CDS | 30.0% | |
| CAACATGTAAAGTGTGTTTA+GGG | - | chr3_2:5924912-5924931 | Msa0392690:CDS | 30.0% | |
| AACATGTAAAGTGTGTTTAG+GGG | - | chr3_2:5924913-5924932 | Msa0392690:CDS | 30.0% | |
| TACATTAAGCATGATAGAAC+TGG | - | chr3_2:5924956-5924975 | Msa0392690:CDS | 30.0% | |
| CTTTAGACATCAACAATATG+AGG | - | chr3_2:5925018-5925037 | Msa0392690:CDS | 30.0% | |
| TAACCCTAATGCATCATCAA+GGG | + | chr3_2:5922192-5922211 | None:intergenic | 35.0% | |
| TTAACCCTAATGCATCATCA+AGG | + | chr3_2:5922193-5922212 | None:intergenic | 35.0% | |
| ! | ATTAAGAGTGTACGAGTTGT+TGG | - | chr3_2:5922322-5922341 | Msa0392690:CDS | 35.0% |
| GACGATAATGAAGAACAAGA+TGG | - | chr3_2:5922425-5922444 | Msa0392690:CDS | 35.0% | |
| GAGAAGTGAGTGTAAGATTA+AGG | - | chr3_2:5922730-5922749 | Msa0392690:CDS | 35.0% | |
| ! | CACTTTGCATTTGTTGAGTA+TGG | - | chr3_2:5922767-5922786 | Msa0392690:CDS | 35.0% |
| CAAACTTTGTGATCGAATCT+CGG | - | chr3_2:5922927-5922946 | Msa0392690:CDS | 35.0% | |
| AAACTTTGTGATCGAATCTC+GGG | - | chr3_2:5922928-5922947 | Msa0392690:CDS | 35.0% | |
| GAGAATTAAAAGTAGGGGTT+TGG | - | chr3_2:5923011-5923030 | Msa0392690:CDS | 35.0% | |
| !! | GAATGAGAAGTATTCTGAGT+TGG | + | chr3_2:5923232-5923251 | None:intergenic | 35.0% |
| GCAAACTAAAAAACACACAG+TGG | + | chr3_2:5923307-5923326 | None:intergenic | 35.0% | |
| !! | GATAGTTTCCTCTGAAACTT+TGG | - | chr3_2:5923443-5923462 | Msa0392690:intron | 35.0% |
| ! | TCATTGTTAGTCTCATCCTT+AGG | - | chr3_2:5923483-5923502 | Msa0392690:intron | 35.0% |
| CAATAAAAGAGGGAATCCTA+AGG | + | chr3_2:5923502-5923521 | None:intergenic | 35.0% | |
| AATAGCATATGAGTATGAGC+TGG | + | chr3_2:5923550-5923569 | None:intergenic | 35.0% | |
| AGTGTATGAACATTCGCATT+AGG | - | chr3_2:5923596-5923615 | Msa0392690:intron | 35.0% | |
| AGAATGTTAATTTCCCTCTG+AGG | - | chr3_2:5923724-5923743 | Msa0392690:intron | 35.0% | |
| ! | TAGCAATTTTCATCCTCAGA+GGG | + | chr3_2:5923740-5923759 | None:intergenic | 35.0% |
| ! | ATAGCAATTTTCATCCTCAG+AGG | + | chr3_2:5923741-5923760 | None:intergenic | 35.0% |
| !! | TGTTGGTCACCATTTTTGTT+TGG | - | chr3_2:5923828-5923847 | Msa0392690:intron | 35.0% |
| !! | GTTGGTCACCATTTTTGTTT+GGG | - | chr3_2:5923829-5923848 | Msa0392690:intron | 35.0% |
| ATCACAACAATGACAAGGTT+AGG | + | chr3_2:5923971-5923990 | None:intergenic | 35.0% | |
| TGTGTATCACAACAATGACA+AGG | + | chr3_2:5923976-5923995 | None:intergenic | 35.0% | |
| TTGTCATTGTTGTGATACAC+AGG | - | chr3_2:5923975-5923994 | Msa0392690:intron | 35.0% | |
| TGTCATTGTTGTGATACACA+GGG | - | chr3_2:5923976-5923995 | Msa0392690:intron | 35.0% | |
| ACACGCAAGAAAATTGAAAG+AGG | + | chr3_2:5924085-5924104 | None:intergenic | 35.0% | |
| ! | TTCTGGTACTTTGCCTATTT+TGG | - | chr3_2:5924260-5924279 | Msa0392690:intron | 35.0% |
| AGCGGATATTTGATCATGAA+AGG | - | chr3_2:5924290-5924309 | Msa0392690:intron | 35.0% | |
| ! | TACCATGTCTTACTTGCTTT+TGG | - | chr3_2:5924407-5924426 | Msa0392690:intron | 35.0% |
| GTCACTTCATGTAAAAGTTC+TGG | - | chr3_2:5924455-5924474 | Msa0392690:intron | 35.0% | |
| TATATATGTTGTCACCAACG+AGG | - | chr3_2:5924577-5924596 | Msa0392690:intron | 35.0% | |
| TAACATCTACGTCACACATA+AGG | - | chr3_2:5924669-5924688 | Msa0392690:intron | 35.0% | |
| AACCATGAATTATGTCAAGC+TGG | - | chr3_2:5924772-5924791 | Msa0392690:CDS | 35.0% | |
| TTCCAGCTTGACATAATTCA+TGG | + | chr3_2:5924777-5924796 | None:intergenic | 35.0% | |
| !!! | TTGCCTTATTTTATGCTTCG+GGG | - | chr3_2:5924810-5924829 | Msa0392690:CDS | 35.0% |
| TGTTGTGGATGAAAGATTGA+TGG | + | chr3_2:5924897-5924916 | None:intergenic | 35.0% | |
| TAGACATCAACAATATGAGG+TGG | - | chr3_2:5925021-5925040 | Msa0392690:CDS | 35.0% | |
| !! | TCTCCCTTGATGATGCATTA+GGG | - | chr3_2:5922186-5922205 | Msa0392690:CDS | 40.0% |
| AGGCTGAAAGAATTGATGCT+AGG | - | chr3_2:5922291-5922310 | Msa0392690:CDS | 40.0% | |
| GGCTGAAAGAATTGATGCTA+GGG | - | chr3_2:5922292-5922311 | Msa0392690:CDS | 40.0% | |
| TTATCGTCATCACGATCCAA+TGG | + | chr3_2:5922413-5922432 | None:intergenic | 40.0% | |
| AGATTTCCCCTAAACCTTGA+GGG | + | chr3_2:5922822-5922841 | None:intergenic | 40.0% | |
| AAGATTTCCCCTAAACCTTG+AGG | + | chr3_2:5922823-5922842 | None:intergenic | 40.0% | |
| CGAGATTCGATCACAAAGTT+TGG | + | chr3_2:5922929-5922948 | None:intergenic | 40.0% | |
| TTTCTTTCGACCTATTCGGA+AGG | - | chr3_2:5923646-5923665 | Msa0392690:intron | 40.0% | |
| ATTGGCATGATCCCGAAAAT+GGG | - | chr3_2:5923782-5923801 | Msa0392690:intron | 40.0% | |
| GTCATTGTTGTGATACACAG+GGG | - | chr3_2:5923977-5923996 | Msa0392690:intron | 40.0% | |
| TCAAGCATATCCCAGGAAAA+TGG | + | chr3_2:5924032-5924051 | None:intergenic | 40.0% | |
| AATGACATCAAGCATATCCC+AGG | + | chr3_2:5924039-5924058 | None:intergenic | 40.0% | |
| GTCATCGAAATCTAGATCTC+TGG | + | chr3_2:5924063-5924082 | None:intergenic | 40.0% | |
| TTTCTTGCGTGTGCAAGAAT+TGG | - | chr3_2:5924093-5924112 | Msa0392690:intron | 40.0% | |
| CGAAGACGATCAATCAATTC+TGG | - | chr3_2:5924243-5924262 | Msa0392690:intron | 40.0% | |
| !! | GCCTATTTTGGATGTTCTAG+CGG | - | chr3_2:5924272-5924291 | Msa0392690:intron | 40.0% |
| TCCGCTAGAACATCCAAAAT+AGG | + | chr3_2:5924276-5924295 | None:intergenic | 40.0% | |
| TGCCAAAAGCAAGTAAGACA+TGG | + | chr3_2:5924412-5924431 | None:intergenic | 40.0% | |
| !! | GTCTTACTTGCTTTTGGCAA+AGG | - | chr3_2:5924413-5924432 | Msa0392690:intron | 40.0% |
| TGTCTACCAGTCTCGAAATT+TGG | - | chr3_2:5924487-5924506 | Msa0392690:intron | 40.0% | |
| GTCTACCAGTCTCGAAATTT+GGG | - | chr3_2:5924488-5924507 | Msa0392690:intron | 40.0% | |
| AACAATGGGAAATCCATGGA+AGG | - | chr3_2:5924526-5924545 | Msa0392690:intron | 40.0% | |
| ACAAAGTCAACAACCTTCCA+TGG | + | chr3_2:5924542-5924561 | None:intergenic | 40.0% | |
| TGTGACGTAGATGTTACATC+GGG | + | chr3_2:5924665-5924684 | None:intergenic | 40.0% | |
| GTGTGACGTAGATGTTACAT+CGG | + | chr3_2:5924666-5924685 | None:intergenic | 40.0% | |
| ATCTACGTCACACATAAGGT+TGG | - | chr3_2:5924673-5924692 | Msa0392690:intron | 40.0% | |
| !! | ATAAGGTTGGTTTGCTGTGA+TGG | - | chr3_2:5924686-5924705 | Msa0392690:intron | 40.0% |
| !!! | CTGTGATGGACAACTTTTAG+TGG | - | chr3_2:5924700-5924719 | Msa0392690:intron | 40.0% |
| !!! | TGCCTTATTTTATGCTTCGG+GGG | - | chr3_2:5924811-5924830 | Msa0392690:CDS | 40.0% |
| TTCCCCCGAAGCATAAAATA+AGG | + | chr3_2:5924816-5924835 | None:intergenic | 40.0% | |
| TGTAAAGTGTGTTTAGGGGA+TGG | - | chr3_2:5924917-5924936 | Msa0392690:CDS | 40.0% | |
| ! | AAGTAGGCATTTTCCTTTGG+AGG | + | chr3_2:5924986-5925005 | None:intergenic | 40.0% |
| ! | AGCAAGTAGGCATTTTCCTT+TGG | + | chr3_2:5924989-5925008 | None:intergenic | 40.0% |
| AAAGGAAAATGCCTACTTGC+TGG | - | chr3_2:5924988-5925007 | Msa0392690:CDS | 40.0% | |
| ! | AAAATGCCTACTTGCTGGAT+TGG | - | chr3_2:5924993-5925012 | Msa0392690:CDS | 40.0% |
| !! | CTCTCCCTTGATGATGCATT+AGG | - | chr3_2:5922185-5922204 | Msa0392690:CDS | 45.0% |
| AGAGTGTACGAGTTGTTGGA+CGG | - | chr3_2:5922326-5922345 | Msa0392690:CDS | 45.0% | |
| AATCACACCTTCAGTTCAGC+TGG | - | chr3_2:5922490-5922509 | Msa0392690:CDS | 45.0% | |
| CGTCTTCTTACCTTCCGAAT+AGG | + | chr3_2:5923659-5923678 | None:intergenic | 45.0% | |
| CATTGGCATGATCCCGAAAA+TGG | - | chr3_2:5923781-5923800 | Msa0392690:intron | 45.0% | |
| !! | ACTTGCTTTTGGCAAAGGCT+CGG | - | chr3_2:5924418-5924437 | Msa0392690:intron | 45.0% |
| ACCAGTCTCGAAATTTGGGT+TGG | - | chr3_2:5924492-5924511 | Msa0392690:intron | 45.0% | |
| ! | CCAGTCTCGAAATTTGGGTT+GGG | - | chr3_2:5924493-5924512 | Msa0392690:intron | 45.0% |
| CAAGTCGAGTACACCTATGA+TGG | + | chr3_2:5924603-5924622 | None:intergenic | 45.0% | |
| AGTGGTTCATATTGAGTCCG+AGG | - | chr3_2:5924718-5924737 | Msa0392690:intron | 45.0% | |
| TCTATGCATTAAGCAACCCG+AGG | - | chr3_2:5924840-5924859 | Msa0392690:CDS | 45.0% | |
| TAGAACTGGAGTTCCTCCAA+AGG | - | chr3_2:5924970-5924989 | Msa0392690:CDS | 45.0% | |
| ! | AAAGCACCAATCCAGCAAGT+AGG | + | chr3_2:5925002-5925021 | None:intergenic | 45.0% |
| !!! | AAATAAAAAAACATATATTT+TGG | - | chr3_2:5923914-5923933 | Msa0392690:intron | 5.0% |
| !! | TAAGTTGGTAGGGTCCCTCA+AGG | - | chr3_2:5922805-5922824 | Msa0392690:CDS | 50.0% |
| GTAGGGTCCCTCAAGGTTTA+GGG | - | chr3_2:5922812-5922831 | Msa0392690:CDS | 50.0% | |
| TAGGGTCCCTCAAGGTTTAG+GGG | - | chr3_2:5922813-5922832 | Msa0392690:CDS | 50.0% | |
| ! | GGATGAGAAGTGTGCTGAGT+TGG | + | chr3_2:5923529-5923548 | None:intergenic | 50.0% |
| TCGGTCAGCTATGCTGATGA+AGG | + | chr3_2:5924210-5924229 | None:intergenic | 50.0% | |
| CCCAACCCAAATTTCGAGAC+TGG | + | chr3_2:5924496-5924515 | None:intergenic | 50.0% | |
| TACACCTATGATGGCCTCGT+TGG | + | chr3_2:5924594-5924613 | None:intergenic | 50.0% | |
| ATGCATTAAGCAACCCGAGG+AGG | - | chr3_2:5924843-5924862 | Msa0392690:CDS | 50.0% | |
| ATTAAGCAACCCGAGGAGGT+GGG | - | chr3_2:5924847-5924866 | Msa0392690:CDS | 50.0% | |
| TTTCAAAACCCCACCTCCTC+GGG | + | chr3_2:5924859-5924878 | None:intergenic | 50.0% | |
| CTTTCAAAACCCCACCTCCT+CGG | + | chr3_2:5924860-5924879 | None:intergenic | 50.0% | |
| CCAGTGTCCAGCTGAACTGA+AGG | + | chr3_2:5922500-5922519 | None:intergenic | 55.0% | |
| CCTTCAGTTCAGCTGGACAC+TGG | - | chr3_2:5922497-5922516 | Msa0392690:CDS | 55.0% | |
| GGTAGGGTCCCTCAAGGTTT+AGG | - | chr3_2:5922811-5922830 | Msa0392690:CDS | 55.0% | |
| ! | TGCTTTTGGCAAAGGCTCGG+AGG | - | chr3_2:5924421-5924440 | Msa0392690:intron | 55.0% |
| GTCACCAACGAGGCCATCAT+AGG | - | chr3_2:5924587-5924606 | Msa0392690:intron | 55.0% | |
| CATTAAGCAACCCGAGGAGG+TGG | - | chr3_2:5924846-5924865 | Msa0392690:CDS | 55.0% | |
| TTAAGCAACCCGAGGAGGTG+GGG | - | chr3_2:5924848-5924867 | Msa0392690:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 5922176 | 5925063 | 5922176 | ID=Msa0392690;Name=Msa0392690 |
| chr3_2 | mRNA | 5922176 | 5925063 | 5922176 | ID=Msa0392690-mRNA-1;Parent=Msa0392690;Name=Msa0392690-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|2|0|469 |
| chr3_2 | exon | 5924721 | 5925063 | 5924721 | ID=Msa0392690-mRNA-1:exon:1535;Parent=Msa0392690-mRNA-1 |
| chr3_2 | exon | 5922176 | 5923242 | 5922176 | ID=Msa0392690-mRNA-1:exon:1534;Parent=Msa0392690-mRNA-1 |
| chr3_2 | CDS | 5924721 | 5925063 | 5924721 | ID=Msa0392690-mRNA-1:cds;Parent=Msa0392690-mRNA-1 |
| chr3_2 | CDS | 5922176 | 5923242 | 5922176 | ID=Msa0392690-mRNA-1:cds;Parent=Msa0392690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
