AlfalfaGEDB | Msa0392720

M. sativa cultivar zhongmu-4 / Msa0392720

KEGG: K20791
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006950 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017198 GO:0018002 GO:0018193 GO:0018200 GO:0018209 GO:0019538 GO:0022414 GO:0022626 GO:0030920 GO:0031248 GO:0031365 GO:0031414 GO:0031415 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051604 GO:0061458 GO:0071704 GO:1901564 GO:1901700 GO:1902493 GO:1902494 GO:1990189 GO:1990190 GO:1990234 GO:1990904
PFAM: PF08445.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0392720	GAU38899.1	48.462	130	38	3	4	104	2	131	1.30e-25	104

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0392720	sp\|Q9FKI4\|NAA10_ARATH	40.741	135	41	3	4	104	2	131	2.04e-22	89.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0392720	A0A2Z6P5E3	48.462	130	38	3	4	104	2	131	6.22e-26	104

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TFs/TRs:

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Gene ID	Type	Classification
Msa0392720	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0392720	MtrunA17_Chr3g0090311	47.692	130	39	3	4	104	2	131	1.01e-28	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0392720	AT5G13780.1	40.741	135	41	3	4	104	2	131	2.08e-23	89.4

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Find 27 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTTCCATGTCGTTT+TGG	0.275526	3_2:-5983611	None:intergenic
AAGTTGAGGTCGTGAGAAGA+GGG	0.584002	3_2:-5983339	None:intergenic
ACATCTTAGAGAGGTCGCAA+AGG	0.660670	3_2:-5983289	None:intergenic
ACCATGAATCTTGTATCCCA+AGG	0.610002	3_2:-5984505	None:intergenic
ACCTTGGGATACAAGATTCA+TGG	0.434690	3_2:+5984504	Msa0392720:CDS
AGAGTTTGTACATCTTAGAG+AGG	0.637261	3_2:-5983298	None:intergenic
AGCGATACCACGTCTCTGAT+GGG	0.588160	3_2:-5983568	None:intergenic
AGTACGCCTTAGTGCATATC+AGG	0.403838	3_2:+5984445	Msa0392720:CDS
ATACCACGTCTCTGATGGGT+TGG	0.540598	3_2:-5983564	None:intergenic
ATGGGTTGGGAGAACGGCGA+GGG	0.570608	3_2:-5983550	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCAAGAGGAAATTAGTGA+AGG	+	chr3_2:5983516-5983535	Msa0392720:intron	30.0%
TATTAATTCAAATTGCACCG+AGG	+	chr3_2:5983698-5983717	Msa0392720:intron	30.0%
ATTAATTCAAATTGCACCGA+GGG	+	chr3_2:5983699-5983718	Msa0392720:intron	30.0%
ATCAAATTAGTCAATGCATC+TGG	+	chr3_2:5983914-5983933	Msa0392720:intron	30.0%
TTAGTTAGGTCCAATTAGAT+TGG	+	chr3_2:5983957-5983976	Msa0392720:intron	30.0%
GAGTCAAGTTATTAACTACT+TGG	+	chr3_2:5984111-5984130	Msa0392720:intron	30.0%
ATATGTAGAATTGCAGAACT+AGG	-	chr3_2:5984265-5984284	None:intergenic	30.0%
TTGTATTTGACACAGATGTT+TGG	+	chr3_2:5984372-5984391	Msa0392720:intron	30.0%
ATTCAAGAGGAAATTAGTGA+AGG	+	chr3_2:5983516-5983535	Msa0392720:intron	30.0%
TATTAATTCAAATTGCACCG+AGG	+	chr3_2:5983698-5983717	Msa0392720:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	5983260	5984524	5983260	ID=Msa0392720;Name=Msa0392720
chr3_2	mRNA	5983260	5984524	5983260	ID=Msa0392720-mRNA-1;Parent=Msa0392720;Name=Msa0392720-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|1\|0.5\|0.33\|3\|0\|104
chr3_2	exon	5983260	5983386	5983260	ID=Msa0392720-mRNA-1:exon:1515;Parent=Msa0392720-mRNA-1
chr3_2	exon	5983538	5983629	5983538	ID=Msa0392720-mRNA-1:exon:1516;Parent=Msa0392720-mRNA-1
chr3_2	exon	5984432	5984524	5984432	ID=Msa0392720-mRNA-1:exon:1517;Parent=Msa0392720-mRNA-1
chr3_2	CDS	5983260	5983386	5983260	ID=Msa0392720-mRNA-1:cds;Parent=Msa0392720-mRNA-1
chr3_2	CDS	5983538	5983629	5983538	ID=Msa0392720-mRNA-1:cds;Parent=Msa0392720-mRNA-1
chr3_2	CDS	5984432	5984524	5984432	ID=Msa0392720-mRNA-1:cds;Parent=Msa0392720-mRNA-1

Gene Sequence	>Msa0392720 ATGTCTCAAGTGTGCATAAGAGAAGCAAACCTTTGCGACCTCTCTAAGATGTACAAACTCTTTGGTCTAAATCCTGTTGCCCTCTTCTCACGACCTCAACTTATTCACGTCGCAGAAGATATTAATGGAGCTATTCATTCCCTCGCCGTTCTCCCAACCCATCAGAGACGTGGTATCGCTACTAAGCTTGTGATTGCCTCCCAAAACGACATGGAACAGATGTTTGGTTCTGAGTACGCCTTAGTGCATATCAGGAAGAGCAACCAAGCAGCTTTTCATTTGTTCAAAGAGACCTTGGGATACAAGATTCAT
Protein sequence	>Msa0392720 MSQVCIREANLCDLSKMYKLFGLNPVALFSRPQLIHVAEDINGAIHSLAVLPTHQRRGIATKLVIASQNDMEQMFGSEYALVHIRKSNQAAFHLFKETLGYKIH