Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392820 | RYQ94656.1 | 87.324 | 71 | 9 | 0 | 85 | 155 | 91 | 161 | 4.57e-35 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392820 | sp|Q9LVS0|KUA1_ARATH | 73.239 | 71 | 19 | 0 | 85 | 155 | 95 | 165 | 6.60e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392820 | A0A103XVQ4 | 79.487 | 78 | 16 | 0 | 85 | 162 | 104 | 181 | 1.99e-29 | 116 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0392820 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392820 | MtrunA17_Chr3g0092621 | 69.892 | 93 | 24 | 1 | 69 | 157 | 63 | 155 | 5.85e-39 | 130 |
| Msa0392820 | MtrunA17_Chr5g0415191 | 80.000 | 75 | 15 | 0 | 85 | 159 | 101 | 175 | 4.19e-31 | 114 |
| Msa0392820 | MtrunA17_Chr4g0055931 | 71.014 | 69 | 20 | 0 | 85 | 153 | 94 | 162 | 1.30e-30 | 112 |
| Msa0392820 | MtrunA17_Chr2g0331031 | 67.606 | 71 | 23 | 0 | 85 | 155 | 108 | 178 | 1.71e-30 | 113 |
| Msa0392820 | MtrunA17_Chr6g0488471 | 71.212 | 66 | 19 | 0 | 85 | 150 | 96 | 161 | 8.03e-30 | 110 |
| Msa0392820 | MtrunA17_Chr4g0059701 | 91.549 | 71 | 6 | 0 | 85 | 155 | 83 | 153 | 2.73e-29 | 108 |
| Msa0392820 | MtrunA17_Chr8g0389241 | 68.182 | 66 | 20 | 1 | 85 | 150 | 104 | 168 | 1.56e-27 | 103 |
| Msa0392820 | MtrunA17_Chr4g0062741 | 67.647 | 68 | 22 | 0 | 85 | 152 | 137 | 204 | 1.76e-27 | 104 |
| Msa0392820 | MtrunA17_Chr1g0162081 | 66.176 | 68 | 23 | 0 | 85 | 152 | 121 | 188 | 2.35e-26 | 101 |
| Msa0392820 | MtrunA17_Chr6g0452791 | 77.966 | 59 | 13 | 0 | 86 | 144 | 80 | 138 | 3.54e-26 | 97.8 |
| Msa0392820 | MtrunA17_Chr1g0210471 | 64.706 | 68 | 24 | 0 | 85 | 152 | 123 | 190 | 1.14e-25 | 98.2 |
| Msa0392820 | MtrunA17_Chr3g0104071 | 64.706 | 68 | 24 | 0 | 85 | 152 | 146 | 213 | 1.67e-25 | 99.4 |
| Msa0392820 | MtrunA17_Chr5g0429521 | 64.706 | 68 | 24 | 0 | 85 | 152 | 131 | 198 | 1.78e-25 | 99.0 |
| Msa0392820 | MtrunA17_Chr7g0241761 | 64.179 | 67 | 24 | 0 | 85 | 151 | 139 | 205 | 1.13e-24 | 97.1 |
| Msa0392820 | MtrunA17_Chr5g0436501 | 60.274 | 73 | 27 | 1 | 85 | 155 | 124 | 196 | 9.30e-23 | 91.3 |
| Msa0392820 | MtrunA17_Chr3g0135671 | 53.086 | 81 | 32 | 2 | 85 | 162 | 90 | 167 | 6.94e-22 | 88.2 |
| Msa0392820 | MtrunA17_Chr5g0409841 | 48.529 | 68 | 33 | 1 | 86 | 151 | 92 | 159 | 2.19e-17 | 76.3 |
| Msa0392820 | MtrunA17_Chr5g0440741 | 45.570 | 79 | 37 | 3 | 88 | 160 | 102 | 180 | 1.88e-16 | 74.3 |
| Msa0392820 | MtrunA17_Chr5g0440731 | 44.444 | 81 | 39 | 3 | 86 | 160 | 105 | 185 | 7.47e-16 | 72.8 |
| Msa0392820 | MtrunA17_Chr8g0365011 | 46.154 | 78 | 28 | 2 | 88 | 151 | 94 | 171 | 7.62e-15 | 70.1 |
| Msa0392820 | MtrunA17_Chr3g0113121 | 48.611 | 72 | 30 | 2 | 88 | 152 | 97 | 168 | 2.91e-14 | 67.4 |
| Msa0392820 | MtrunA17_Chr5g0409831 | 45.455 | 77 | 36 | 2 | 86 | 156 | 77 | 153 | 3.08e-14 | 67.8 |
| Msa0392820 | MtrunA17_Chr8g0364731 | 54.237 | 59 | 25 | 1 | 95 | 151 | 10 | 68 | 1.73e-13 | 65.1 |
| Msa0392820 | MtrunA17_Chr5g0432941 | 46.875 | 64 | 30 | 2 | 88 | 148 | 115 | 177 | 1.13e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392820 | AT5G47390.1 | 73.239 | 71 | 19 | 0 | 85 | 155 | 95 | 165 | 6.71e-32 | 117 |
| Msa0392820 | AT1G49010.1 | 63.636 | 77 | 28 | 0 | 85 | 161 | 133 | 209 | 2.40e-28 | 107 |
| Msa0392820 | AT1G70000.1 | 77.778 | 72 | 16 | 0 | 85 | 156 | 97 | 168 | 1.74e-27 | 103 |
| Msa0392820 | AT1G70000.2 | 77.778 | 72 | 16 | 0 | 85 | 156 | 97 | 168 | 1.74e-27 | 103 |
| Msa0392820 | AT1G74840.2 | 81.944 | 72 | 13 | 0 | 85 | 156 | 95 | 166 | 3.05e-26 | 100 |
| Msa0392820 | AT1G74840.1 | 81.944 | 72 | 13 | 0 | 85 | 156 | 95 | 166 | 4.24e-26 | 100 |
| Msa0392820 | AT2G38090.1 | 64.706 | 68 | 24 | 0 | 85 | 152 | 140 | 207 | 5.09e-26 | 100 |
| Msa0392820 | AT5G58900.1 | 64.706 | 68 | 24 | 0 | 85 | 152 | 140 | 207 | 8.32e-26 | 99.8 |
| Msa0392820 | AT5G04760.1 | 64.706 | 68 | 24 | 0 | 85 | 152 | 98 | 165 | 8.85e-26 | 98.2 |
| Msa0392820 | AT5G08520.1 | 64.706 | 68 | 24 | 0 | 85 | 152 | 117 | 184 | 1.05e-25 | 99.8 |
| Msa0392820 | AT1G19000.2 | 80.282 | 71 | 14 | 0 | 85 | 155 | 101 | 171 | 2.46e-25 | 98.6 |
| Msa0392820 | AT1G19000.1 | 80.282 | 71 | 14 | 0 | 85 | 155 | 101 | 171 | 2.46e-25 | 98.6 |
| Msa0392820 | AT3G16350.1 | 68.056 | 72 | 23 | 0 | 85 | 156 | 136 | 207 | 2.93e-25 | 100 |
| Msa0392820 | AT5G56840.1 | 60.870 | 69 | 26 | 1 | 85 | 152 | 90 | 158 | 3.96e-25 | 97.1 |
| Msa0392820 | AT5G61620.1 | 59.420 | 69 | 28 | 0 | 85 | 153 | 107 | 175 | 4.27e-24 | 95.9 |
| Msa0392820 | AT5G01200.1 | 51.111 | 90 | 44 | 0 | 63 | 152 | 123 | 212 | 7.91e-24 | 94.4 |
| Msa0392820 | AT5G05790.2 | 50.526 | 95 | 42 | 2 | 63 | 152 | 103 | 197 | 7.10e-23 | 92.0 |
| Msa0392820 | AT5G05790.1 | 50.526 | 95 | 42 | 2 | 63 | 152 | 103 | 197 | 7.10e-23 | 92.0 |
| Msa0392820 | AT3G11280.2 | 56.944 | 72 | 31 | 0 | 85 | 156 | 126 | 197 | 1.38e-22 | 90.9 |
| Msa0392820 | AT3G11280.1 | 56.944 | 72 | 31 | 0 | 85 | 156 | 126 | 197 | 1.38e-22 | 90.9 |
| Msa0392820 | AT3G10580.2 | 50.617 | 81 | 35 | 2 | 85 | 162 | 94 | 172 | 9.67e-20 | 83.2 |
| Msa0392820 | AT3G10580.1 | 50.617 | 81 | 35 | 2 | 85 | 162 | 94 | 172 | 1.62e-19 | 83.2 |
| Msa0392820 | AT4G09450.1 | 50.000 | 72 | 36 | 0 | 85 | 156 | 90 | 161 | 2.19e-18 | 78.6 |
| Msa0392820 | AT5G23650.1 | 55.224 | 67 | 30 | 0 | 85 | 151 | 119 | 185 | 1.03e-17 | 79.0 |
| Msa0392820 | AT3G10590.1 | 49.275 | 69 | 34 | 1 | 87 | 155 | 112 | 179 | 4.92e-16 | 72.4 |
Find 49 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCTCTGGCGGCCGAAAA+TGG | 0.315874 | 3_2:+6169656 | Msa0392820:CDS |
| CAACAGAGCCTGATGGATTC+TGG | 0.337961 | 3_2:-6168939 | None:intergenic |
| AGTTGGTGCCGCCAGGATTA+TGG | 0.347678 | 3_2:-6168970 | None:intergenic |
| CCAACCCTTTCTTCTTGCTT+AGG | 0.375499 | 3_2:+6169026 | Msa0392820:CDS |
| AATCCTGGCGGCACCAACTA+TGG | 0.381211 | 3_2:+6168974 | Msa0392820:CDS |
| AGAAAGTTAGAAAAGGTGAT+TGG | 0.415216 | 3_2:+6172268 | Msa0392820:CDS |
| CTAAGCAAGAAGAAAGGGTT+GGG | 0.426663 | 3_2:-6169025 | None:intergenic |
| TGTTTCTACAAAGAGATTGC+CGG | 0.433250 | 3_2:-6172438 | None:intergenic |
| GGAGGGGTCGATGGTGGCAT+TGG | 0.438320 | 3_2:-6168914 | None:intergenic |
| CCCTCCCACCAGAATCCATC+AGG | 0.490036 | 3_2:+6168931 | Msa0392820:CDS |
| CTTAGTTCATCGGGCTCCAT+CGG | 0.496160 | 3_2:-6169684 | None:intergenic |
| ACAACTGCTCTTAGTTCATC+GGG | 0.500188 | 3_2:-6169693 | None:intergenic |
| TTAAACCTAAGCAAGAAGAA+AGG | 0.501787 | 3_2:-6169031 | None:intergenic |
| GCCTGATGGATTCTGGTGGG+AGG | 0.501988 | 3_2:-6168932 | None:intergenic |
| AGACCATAGTTGGTGCCGCC+AGG | 0.502816 | 3_2:-6168977 | None:intergenic |
| CCTGATGGATTCTGGTGGGA+GGG | 0.506952 | 3_2:-6168931 | None:intergenic |
| ATTCTGGTGGGAGGGGTCGA+TGG | 0.509187 | 3_2:-6168923 | None:intergenic |
| AGTGGTGATATCATAGAGAC+TGG | 0.518743 | 3_2:-6172400 | None:intergenic |
| GACAACTGCTCTTAGTTCAT+CGG | 0.519655 | 3_2:-6169694 | None:intergenic |
| TAAACCTAAGCAAGAAGAAA+GGG | 0.521492 | 3_2:-6169030 | None:intergenic |
| GAAAACAAGAACGCCTATGC+AGG | 0.525109 | 3_2:+6172314 | Msa0392820:CDS |
| CTGATGGATTCTGGTGGGAG+GGG | 0.526688 | 3_2:-6168930 | None:intergenic |
| TTGTGCTCTTCCTCCGTCCA+CGG | 0.535860 | 3_2:-6172225 | None:intergenic |
| TTGTATCACCACCATAATCC+TGG | 0.543583 | 3_2:+6168959 | Msa0392820:CDS |
| AACTATGGTCTATCCGTAGC+AGG | 0.544635 | 3_2:+6168989 | Msa0392820:CDS |
| CTGGTGGGAGGGGTCGATGG+TGG | 0.545860 | 3_2:-6168920 | None:intergenic |
| GCATGACTTGCAACCTGCAT+AGG | 0.552464 | 3_2:-6172327 | None:intergenic |
| CATGAATGTCAAAATTCTGA+AGG | 0.559473 | 3_2:-6169716 | None:intergenic |
| GCCGAAAATGGTATCACCGA+TGG | 0.562882 | 3_2:+6169668 | Msa0392820:CDS |
| TGGATCAGGGATTCCGTGGA+CGG | 0.564976 | 3_2:+6172212 | Msa0392820:intron |
| CCTAAGCAAGAAGAAAGGGT+TGG | 0.567270 | 3_2:-6169026 | None:intergenic |
| TGCTACGGATAGACCATAGT+TGG | 0.571530 | 3_2:-6168987 | None:intergenic |
| GTCGGAATCAGCACCTGCTA+CGG | 0.586032 | 3_2:-6169002 | None:intergenic |
| GGATTGCAGAAAGTTAGAAA+AGG | 0.586465 | 3_2:+6172261 | Msa0392820:CDS |
| TATCATAGAGACTGGATCTA+CGG | 0.592657 | 3_2:-6172392 | None:intergenic |
| CTATGATATCACCACTGACA+CGG | 0.608553 | 3_2:+6172407 | Msa0392820:CDS |
| CAGAGCCTGATGGATTCTGG+TGG | 0.612758 | 3_2:-6168936 | None:intergenic |
| GTTAGAAAAGGTGATTGGAG+AGG | 0.613085 | 3_2:+6172273 | Msa0392820:CDS |
| GTGATTGGAGAGGAATCTCA+AGG | 0.619264 | 3_2:+6172283 | Msa0392820:CDS |
| CAAGAAGAAAGGGTTGGGGT+CGG | 0.627588 | 3_2:-6169020 | None:intergenic |
| TGAATGGATCAGGGATTCCG+TGG | 0.629323 | 3_2:+6172208 | Msa0392820:intron |
| GGTGATACAACAGAGCCTGA+TGG | 0.644053 | 3_2:-6168946 | None:intergenic |
| AGAGCCTGATGGATTCTGGT+GGG | 0.651305 | 3_2:-6168935 | None:intergenic |
| GACGGCGATTGAGATTACTT+CGG | 0.656018 | 3_2:-6172368 | None:intergenic |
| ATCAGGGATTCCGTGGACGG+AGG | 0.665588 | 3_2:+6172215 | Msa0392820:intron |
| TAAGCAAGAAGAAAGGGTTG+GGG | 0.688258 | 3_2:-6169024 | None:intergenic |
| AGAGACTGGATCTACGGCGA+CGG | 0.700084 | 3_2:-6172386 | None:intergenic |
| TGGTGCCGCCAGGATTATGG+TGG | 0.711760 | 3_2:-6168967 | None:intergenic |
| TATCACCACCATAATCCTGG+CGG | 0.754441 | 3_2:+6168962 | Msa0392820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTGAAAAAACATT+AGG | - | chr3_2:6169057-6169076 | None:intergenic | 10.0% |
| !!! | AATTTTAATTAGTTATTTCA+AGG | + | chr3_2:6169148-6169167 | Msa0392820:intron | 10.0% |
| !! | ATTTACAAAAGAATAATAAA+AGG | - | chr3_2:6171088-6171107 | None:intergenic | 10.0% |
| !! | AATTAAAACTAATAACATTT+GGG | - | chr3_2:6171149-6171168 | None:intergenic | 10.0% |
| !! | AAATTAAAACTAATAACATT+TGG | - | chr3_2:6171150-6171169 | None:intergenic | 10.0% |
| !!! | AAATGTTATTAGTTTTAATT+TGG | + | chr3_2:6171149-6171168 | Msa0392820:intron | 10.0% |
| !! | AAATATATAATGTTCAGAAA+AGG | - | chr3_2:6170133-6170152 | None:intergenic | 15.0% |
| !! | AAATCAATAATCAAAAGAAA+GGG | - | chr3_2:6170320-6170339 | None:intergenic | 15.0% |
| !! | AAAATCAATAATCAAAAGAA+AGG | - | chr3_2:6170321-6170340 | None:intergenic | 15.0% |
| !!! | AGACTTTTGATTATTATATT+AGG | + | chr3_2:6170354-6170373 | Msa0392820:intron | 15.0% |
| !!! | TATAACTTATCAATGATTTT+AGG | + | chr3_2:6170661-6170680 | Msa0392820:intron | 15.0% |
| !!! | TTTCAATTATTTGAAATTGT+AGG | - | chr3_2:6170747-6170766 | None:intergenic | 15.0% |
| !!! | TTTTAATTTGGTATCTTATT+TGG | + | chr3_2:6171161-6171180 | Msa0392820:intron | 15.0% |
| !! | AAGAAAAAAAAAATACATTC+AGG | + | chr3_2:6171201-6171220 | Msa0392820:intron | 15.0% |
| !! | TTAAAATTCTTCATCTTATC+TGG | + | chr3_2:6169070-6169089 | Msa0392820:intron | 20.0% |
| !!! | TTTTTAGATGATCATATCAT+AGG | + | chr3_2:6169342-6169361 | Msa0392820:intron | 20.0% |
| !! | TAGTTGTAAAATGAAAAACA+CGG | - | chr3_2:6169389-6169408 | None:intergenic | 20.0% |
| !!! | TGCAATAATTATTTTCAGAT+AGG | - | chr3_2:6169558-6169577 | None:intergenic | 20.0% |
| !! | AAAAATAAAATAAGGTGAGA+TGG | - | chr3_2:6169592-6169611 | None:intergenic | 20.0% |
| !! | GTGCTGAAAAAAATAAAATA+AGG | - | chr3_2:6169600-6169619 | None:intergenic | 20.0% |
| !!! | AAGTAAGTACAATTTTAACT+GGG | - | chr3_2:6169748-6169767 | None:intergenic | 20.0% |
| !!! | AAAGTAAGTACAATTTTAAC+TGG | - | chr3_2:6169749-6169768 | None:intergenic | 20.0% |
| !!! | AATTGTACTTACTTTTTTGT+AGG | + | chr3_2:6169754-6169773 | Msa0392820:intron | 20.0% |
| !! | AAATACGATAAAAATAGATG+AGG | - | chr3_2:6169799-6169818 | None:intergenic | 20.0% |
| !!! | TATCGTATTTCTTATTTTAC+AGG | + | chr3_2:6169809-6169828 | Msa0392820:intron | 20.0% |
| !! | AAGCAAAAATGAAGTAATTA+GGG | - | chr3_2:6169990-6170009 | None:intergenic | 20.0% |
| !! | AAAGCAAAAATGAAGTAATT+AGG | - | chr3_2:6169991-6170010 | None:intergenic | 20.0% |
| !! | GATTATTATATTAGGTAACA+TGG | + | chr3_2:6170362-6170381 | Msa0392820:intron | 20.0% |
| !!! | ATGTTCATGTTTTACAAATT+AGG | + | chr3_2:6171337-6171356 | Msa0392820:intron | 20.0% |
| !!! | TGTTCATGTTTTACAAATTA+GGG | + | chr3_2:6171338-6171357 | Msa0392820:intron | 20.0% |
| !!! | AAACAAATTTTACAACCTTT+TGG | + | chr3_2:6171395-6171414 | Msa0392820:intron | 20.0% |
| !!! | AAACAAATTTTACAACCTTT+TGG | + | chr3_2:6171395-6171414 | Msa0392820:intron | 20.0% |
| !! | TACTAAAGTAGAAATTATTC+AGG | + | chr3_2:6171925-6171944 | Msa0392820:intron | 20.0% |
| !! | ATTTCTAAACTTAATCAATG+TGG | - | chr3_2:6172022-6172041 | None:intergenic | 20.0% |
| !! | ATTTCAATCAATTCAAACAA+AGG | - | chr3_2:6172158-6172177 | None:intergenic | 20.0% |
| !!! | TGTTATTGATTTTCTTTGAA+TGG | + | chr3_2:6172192-6172211 | Msa0392820:intron | 20.0% |
| ! | GAAATGTGAAATTATCCATA+TGG | + | chr3_2:6169246-6169265 | Msa0392820:intron | 25.0% |
| !!! | ACAACTAATTGTTTTATGCT+AGG | + | chr3_2:6169402-6169421 | Msa0392820:intron | 25.0% |
| !! | ACAAGTATTTAGTTTACACT+TGG | + | chr3_2:6169500-6169519 | Msa0392820:intron | 25.0% |
| !!! | TTATTTTTTTCAGCACATCA+TGG | + | chr3_2:6169604-6169623 | Msa0392820:intron | 25.0% |
| !!! | TTACTTTTTTGTAGGTCTAA+AGG | + | chr3_2:6169762-6169781 | Msa0392820:intron | 25.0% |
| !!! | GTATTTCTTATTTTACAGGT+AGG | + | chr3_2:6169813-6169832 | Msa0392820:intron | 25.0% |
| ! | TAAACTTAAGATATGACACA+TGG | + | chr3_2:6169859-6169878 | Msa0392820:intron | 25.0% |
| ! | AAATAGTTCCAAGTTATCAA+AGG | - | chr3_2:6170058-6170077 | None:intergenic | 25.0% |
| !! | GATAACTTGGAACTATTTTA+AGG | + | chr3_2:6170060-6170079 | Msa0392820:intron | 25.0% |
| !! | GTTGATTTCAAACATTTGAT+AGG | + | chr3_2:6170082-6170101 | Msa0392820:intron | 25.0% |
| !! | ATAGGTATTTTTCTAACCAA+AGG | + | chr3_2:6170100-6170119 | Msa0392820:intron | 25.0% |
| !!! | GTTTTTTTTGTACAGTTTCA+AGG | - | chr3_2:6170194-6170213 | None:intergenic | 25.0% |
| ! | AGAAAAAATAGGTGAAATTG+AGG | - | chr3_2:6170230-6170249 | None:intergenic | 25.0% |
| ! | GAATCTTTCACAGAAAAAAT+AGG | - | chr3_2:6170241-6170260 | None:intergenic | 25.0% |
| ! | TCAAGAATTATTACTCGAAA+GGG | - | chr3_2:6170290-6170309 | None:intergenic | 25.0% |
| ! | ATCAAGAATTATTACTCGAA+AGG | - | chr3_2:6170291-6170310 | None:intergenic | 25.0% |
| ! | ATAATCAAAAGAAAGGGAAA+TGG | - | chr3_2:6170314-6170333 | None:intergenic | 25.0% |
| ! | AGCAAATTTCTCACAAAATT+CGG | - | chr3_2:6170564-6170583 | None:intergenic | 25.0% |
| !!! | ATTTTGTGAGAAATTTGCTA+TGG | + | chr3_2:6170565-6170584 | Msa0392820:intron | 25.0% |
| !!! | TTTTGTGAGAAATTTGCTAT+GGG | + | chr3_2:6170566-6170585 | Msa0392820:intron | 25.0% |
| ! | ATAATTCCCTCATAAAATTG+TGG | - | chr3_2:6170616-6170635 | None:intergenic | 25.0% |
| ! | AAATCATTGTATTCAATAGC+AGG | - | chr3_2:6170773-6170792 | None:intergenic | 25.0% |
| !!! | TTTCATCATTTTAGTGACAA+TGG | + | chr3_2:6170790-6170809 | Msa0392820:intron | 25.0% |
| ! | TAAAGAACATGTTATGCAAA+GGG | - | chr3_2:6171310-6171329 | None:intergenic | 25.0% |
| ! | ACTCTTATTCATAGTAAAGT+AGG | + | chr3_2:6171506-6171525 | Msa0392820:intron | 25.0% |
| !! | TATTTGAAGTCAAAACTTTG+AGG | + | chr3_2:6171542-6171561 | Msa0392820:intron | 25.0% |
| ! | TAAAGAACATGTTATCCAAA+GGG | - | chr3_2:6171576-6171595 | None:intergenic | 25.0% |
| !! | ATGTTCATGTTTTACAAATC+AGG | + | chr3_2:6171603-6171622 | Msa0392820:intron | 25.0% |
| !! | TGTTCATGTTTTACAAATCA+GGG | + | chr3_2:6171604-6171623 | Msa0392820:intron | 25.0% |
| ! | CATTAATTGTCTAGAGAAAA+GGG | - | chr3_2:6171708-6171727 | None:intergenic | 25.0% |
| ! | ACTCTTATTCATAGTAAAGT+AGG | + | chr3_2:6171506-6171525 | Msa0392820:intron | 25.0% |
| !! | TATTTGAAGTCAAAACTTTG+AGG | + | chr3_2:6171542-6171561 | Msa0392820:intron | 25.0% |
| !!! | AATATGAGTCATTCTAGAAT+AGG | - | chr3_2:6171829-6171848 | None:intergenic | 25.0% |
| ! | ATGACTCATATTGTAATAGA+TGG | + | chr3_2:6171837-6171856 | Msa0392820:intron | 25.0% |
| ! | TTAAGTTTAGAAATTCTTGC+AGG | + | chr3_2:6172028-6172047 | Msa0392820:intron | 25.0% |
| !!! | GCAACTGTTTTAATTTTTTC+AGG | + | chr3_2:6172093-6172112 | Msa0392820:intron | 25.0% |
| TAAACCTAAGCAAGAAGAAA+GGG | - | chr3_2:6169033-6169052 | None:intergenic | 30.0% | |
| TTAAACCTAAGCAAGAAGAA+AGG | - | chr3_2:6169034-6169053 | None:intergenic | 30.0% | |
| !! | GTGTTTTTCCTCTTATTTAC+AGG | + | chr3_2:6169219-6169238 | Msa0392820:intron | 30.0% |
| TTTCACAACCTGTAAATAAG+AGG | - | chr3_2:6169230-6169249 | None:intergenic | 30.0% | |
| !!! | TGAAGCTTCTATACTTTTTC+AGG | + | chr3_2:6169279-6169298 | Msa0392820:intron | 30.0% |
| GATATTACTCTACACTGATA+TGG | + | chr3_2:6169427-6169446 | Msa0392820:intron | 30.0% | |
| ! | TTATTTTCAGATAGGCATCT+GGG | - | chr3_2:6169550-6169569 | None:intergenic | 30.0% |
| ! | ATTATTTTCAGATAGGCATC+TGG | - | chr3_2:6169551-6169570 | None:intergenic | 30.0% |
| AATAAAATAAGGTGAGATGG+TGG | - | chr3_2:6169589-6169608 | None:intergenic | 30.0% | |
| CAGTAGTAAAAAGAATTCTC+TGG | + | chr3_2:6169643-6169662 | Msa0392820:CDS | 30.0% | |
| TAGTAAAAAGAATTCTCTGG+CGG | + | chr3_2:6169646-6169665 | Msa0392820:CDS | 30.0% | |
| CATGAATGTCAAAATTCTGA+AGG | - | chr3_2:6169719-6169738 | None:intergenic | 30.0% | |
| !! | CTTCAGAATTTTGACATTCA+TGG | + | chr3_2:6169717-6169736 | Msa0392820:CDS | 30.0% |
| TTACAGGTAGGTGTTTATTA+AGG | + | chr3_2:6169825-6169844 | Msa0392820:intron | 30.0% | |
| ! | TTCAACGACTTTTAAGCTTT+TGG | - | chr3_2:6169893-6169912 | None:intergenic | 30.0% |
| AAGCTTAAAAGTCGTTGAAA+AGG | + | chr3_2:6169894-6169913 | Msa0392820:intron | 30.0% | |
| TCAGATTTGACTATTCATGT+TGG | + | chr3_2:6170010-6170029 | Msa0392820:intron | 30.0% | |
| TTGACTATTCATGTTGGATT+TGG | + | chr3_2:6170016-6170035 | Msa0392820:intron | 30.0% | |
| ! | TGGTTTATCCTTTGATAACT+TGG | + | chr3_2:6170047-6170066 | Msa0392820:intron | 30.0% |
| CAGAAAAGGAAAAATACCTT+TGG | - | chr3_2:6170119-6170138 | None:intergenic | 30.0% | |
| AGGAATCTTTCACAAAATTG+AGG | - | chr3_2:6170263-6170282 | None:intergenic | 30.0% | |
| CAAGAATTATTACTCGAAAG+GGG | - | chr3_2:6170289-6170308 | None:intergenic | 30.0% | |
| !!! | AGTGTTAGTAATGTTTTGAC+AGG | + | chr3_2:6170590-6170609 | Msa0392820:intron | 30.0% |
| GAGGGAATTATACTTTCTTT+AGG | + | chr3_2:6170625-6170644 | Msa0392820:intron | 30.0% | |
| TCTTGAAAATCTTGACACAA+TGG | - | chr3_2:6170711-6170730 | None:intergenic | 30.0% | |
| TCCAAAACAGAACATATAGT+CGG | - | chr3_2:6170833-6170852 | None:intergenic | 30.0% | |
| !! | TCTTTAAGTCATGTTGACTT+AGG | + | chr3_2:6170856-6170875 | Msa0392820:intron | 30.0% |
| GTAAAGAACATGTTATGCAA+AGG | - | chr3_2:6171311-6171330 | None:intergenic | 30.0% | |
| ATAATTGAAGTTCGACCAAA+AGG | - | chr3_2:6171413-6171432 | None:intergenic | 30.0% | |
| CCATTAATTGTCTAGAGAAA+GGG | - | chr3_2:6171441-6171460 | None:intergenic | 30.0% | |
| ACCATTAATTGTCTAGAGAA+AGG | - | chr3_2:6171442-6171461 | None:intergenic | 30.0% | |
| GTAAAGAACATGTTATCCAA+AGG | - | chr3_2:6171577-6171596 | None:intergenic | 30.0% | |
| ATAATTGAAGTTCGACCAAA+AGG | - | chr3_2:6171413-6171432 | None:intergenic | 30.0% | |
| CCATTAATTGTCTAGAGAAA+AGG | - | chr3_2:6171441-6171460 | None:intergenic | 30.0% | |
| ! | CCTTTTCTCTAGACAATTAA+TGG | + | chr3_2:6171706-6171725 | Msa0392820:intron | 30.0% |
| GCTATGTAATTTACAGCTTT+AGG | + | chr3_2:6171877-6171896 | Msa0392820:intron | 30.0% | |
| !!! | AGGTTTTAATTTTACGCAGT+TGG | + | chr3_2:6172048-6172067 | Msa0392820:intron | 30.0% |
| ! | TGATTTTCTTTGAATGGATC+AGG | + | chr3_2:6172198-6172217 | Msa0392820:intron | 30.0% |
| ! | GATTTTCTTTGAATGGATCA+GGG | + | chr3_2:6172199-6172218 | Msa0392820:intron | 30.0% |
| AGAAAGTTAGAAAAGGTGAT+TGG | + | chr3_2:6172268-6172287 | Msa0392820:CDS | 30.0% | |
| CTTCAAACTTGACTTCCATA+TGG | - | chr3_2:6169264-6169283 | None:intergenic | 35.0% | |
| !!! | CTTCTATACTTTTTCAGGTG+AGG | + | chr3_2:6169284-6169303 | Msa0392820:intron | 35.0% |
| TGCCTCTATATCGAGTTTAA+TGG | + | chr3_2:6169463-6169482 | Msa0392820:intron | 35.0% | |
| CACCATTAAACTCGATATAG+AGG | - | chr3_2:6169468-6169487 | None:intergenic | 35.0% | |
| ! | TATTTTCAGATAGGCATCTG+GGG | - | chr3_2:6169549-6169568 | None:intergenic | 35.0% |
| !! | GAATTTTGACATTCATGGTG+AGG | + | chr3_2:6169722-6169741 | Msa0392820:intron | 35.0% |
| TATGTGAGTAGATTGAACTC+TGG | + | chr3_2:6169944-6169963 | Msa0392820:intron | 35.0% | |
| ! | TGTTGGATTTGGAATGTGAT+TGG | + | chr3_2:6170027-6170046 | Msa0392820:intron | 35.0% |
| !! | TGAGCTACTGCTTATTTTTC+AGG | + | chr3_2:6170152-6170171 | Msa0392820:intron | 35.0% |
| ! | ACCGACTATATGTTCTGTTT+TGG | + | chr3_2:6170829-6170848 | Msa0392820:intron | 35.0% |
| CTTTAAGTCATGTTCTGCTT+TGG | + | chr3_2:6170885-6170904 | Msa0392820:intron | 35.0% | |
| ! | CTTTCACTCATGTTCTGTTT+TGG | + | chr3_2:6170913-6170932 | Msa0392820:intron | 35.0% |
| ! | AACTGTGATTTTGCTTACCA+TGG | + | chr3_2:6171224-6171243 | Msa0392820:intron | 35.0% |
| ! | GATTTTGCTTACCATGGAAT+TGG | + | chr3_2:6171230-6171249 | Msa0392820:intron | 35.0% |
| AATTGGCATTCTACAACTGT+CGG | + | chr3_2:6171247-6171266 | Msa0392820:intron | 35.0% | |
| CCCTTTCTCTAGACAATTAA+TGG | + | chr3_2:6171438-6171457 | Msa0392820:intron | 35.0% | |
| CCTCAAAGTTTCAAGCATTT+GGG | - | chr3_2:6171485-6171504 | None:intergenic | 35.0% | |
| TCCTCAAAGTTTCAAGCATT+TGG | - | chr3_2:6171486-6171505 | None:intergenic | 35.0% | |
| AGTAAAGTAGGAAATTCTGC+AGG | + | chr3_2:6171518-6171537 | Msa0392820:intron | 35.0% | |
| ACATGTTATCCAAAGGGAAT+AGG | - | chr3_2:6171570-6171589 | None:intergenic | 35.0% | |
| CCTCAAAGTTTCAAGCATTT+GGG | - | chr3_2:6171485-6171504 | None:intergenic | 35.0% | |
| TCCTCAAAGTTTCAAGCATT+TGG | - | chr3_2:6171486-6171505 | None:intergenic | 35.0% | |
| AGTAAAGTAGGAAATTCTGC+AGG | + | chr3_2:6171518-6171537 | Msa0392820:intron | 35.0% | |
| AAGTTTAATCCCACTCAATG+TGG | - | chr3_2:6171996-6172015 | None:intergenic | 35.0% | |
| GGATTGCAGAAAGTTAGAAA+AGG | + | chr3_2:6172261-6172280 | Msa0392820:CDS | 35.0% | |
| TATCATAGAGACTGGATCTA+CGG | - | chr3_2:6172395-6172414 | None:intergenic | 35.0% | |
| TTGTATCACCACCATAATCC+TGG | + | chr3_2:6168959-6168978 | Msa0392820:CDS | 40.0% | |
| TAAGCAAGAAGAAAGGGTTG+GGG | - | chr3_2:6169027-6169046 | None:intergenic | 40.0% | |
| CTAAGCAAGAAGAAAGGGTT+GGG | - | chr3_2:6169028-6169047 | None:intergenic | 40.0% | |
| ! | TCCATCGGTGATACCATTTT+CGG | - | chr3_2:6169672-6169691 | None:intergenic | 40.0% |
| ACAACTGCTCTTAGTTCATC+GGG | - | chr3_2:6169696-6169715 | None:intergenic | 40.0% | |
| GACAACTGCTCTTAGTTCAT+CGG | - | chr3_2:6169697-6169716 | None:intergenic | 40.0% | |
| CAATCTACTCACATACACAG+TGG | - | chr3_2:6169939-6169958 | None:intergenic | 40.0% | |
| TTATTACTCGAAAGGGGTTG+AGG | - | chr3_2:6170283-6170302 | None:intergenic | 40.0% | |
| ! | TGACAGGCCACAATTTTATG+AGG | + | chr3_2:6170606-6170625 | Msa0392820:intron | 40.0% |
| ! | GACAGGCCACAATTTTATGA+GGG | + | chr3_2:6170607-6170626 | Msa0392820:intron | 40.0% |
| ! | TCCCTCTCTTCACATTTTCA+TGG | + | chr3_2:6170985-6171004 | Msa0392820:intron | 40.0% |
| GCCATGAAAATGTGAAGAGA+GGG | - | chr3_2:6170989-6171008 | None:intergenic | 40.0% | |
| TGCCATGAAAATGTGAAGAG+AGG | - | chr3_2:6170990-6171009 | None:intergenic | 40.0% | |
| GTTGTAGAATGCCAATTCCA+TGG | - | chr3_2:6171244-6171263 | None:intergenic | 40.0% | |
| CCCAAATGCTTGAAACTTTG+AGG | + | chr3_2:6171482-6171501 | Msa0392820:intron | 40.0% | |
| CCCAAATGCTTGAAACTTTG+AGG | + | chr3_2:6171482-6171501 | Msa0392820:intron | 40.0% | |
| ! | TAAACTTGCTCCACATTGAG+TGG | + | chr3_2:6171983-6172002 | Msa0392820:intron | 40.0% |
| ! | AAACTTGCTCCACATTGAGT+GGG | + | chr3_2:6171984-6172003 | Msa0392820:intron | 40.0% |
| !! | GGAAGAGCACAAGATGTTTT+TGG | + | chr3_2:6172236-6172255 | Msa0392820:CDS | 40.0% |
| !!! | GAGCACAAGATGTTTTTGGT+TGG | + | chr3_2:6172240-6172259 | Msa0392820:CDS | 40.0% |
| GTTAGAAAAGGTGATTGGAG+AGG | + | chr3_2:6172273-6172292 | Msa0392820:CDS | 40.0% | |
| AGTGGTGATATCATAGAGAC+TGG | - | chr3_2:6172403-6172422 | None:intergenic | 40.0% | |
| CTATGATATCACCACTGACA+CGG | + | chr3_2:6172407-6172426 | Msa0392820:CDS | 40.0% | |
| ! | CACTGACACGGTAATTTTTC+CGG | + | chr3_2:6172419-6172438 | Msa0392820:CDS | 40.0% |
| TATCACCACCATAATCCTGG+CGG | + | chr3_2:6168962-6168981 | Msa0392820:CDS | 45.0% | |
| TGCTACGGATAGACCATAGT+TGG | - | chr3_2:6168990-6169009 | None:intergenic | 45.0% | |
| AACTATGGTCTATCCGTAGC+AGG | + | chr3_2:6168989-6169008 | Msa0392820:CDS | 45.0% | |
| CCTAAGCAAGAAGAAAGGGT+TGG | - | chr3_2:6169029-6169048 | None:intergenic | 45.0% | |
| CCAACCCTTTCTTCTTGCTT+AGG | + | chr3_2:6169026-6169045 | Msa0392820:CDS | 45.0% | |
| GCATTCTACAACTGTCGGTA+GGG | + | chr3_2:6171252-6171271 | Msa0392820:intron | 45.0% | |
| TTTGAGGAGCCTATTCCCTT+TGG | + | chr3_2:6171558-6171577 | Msa0392820:intron | 45.0% | |
| TAGAAATCCTGCAGCTGTTG+TGG | + | chr3_2:6171957-6171976 | Msa0392820:intron | 45.0% | |
| AGAAATCCTGCAGCTGTTGT+GGG | + | chr3_2:6171958-6171977 | Msa0392820:intron | 45.0% | |
| TTTAATCCCACAACAGCTGC+AGG | - | chr3_2:6171967-6171986 | None:intergenic | 45.0% | |
| GTGATTGGAGAGGAATCTCA+AGG | + | chr3_2:6172283-6172302 | Msa0392820:CDS | 45.0% | |
| GAAAACAAGAACGCCTATGC+AGG | + | chr3_2:6172314-6172333 | Msa0392820:CDS | 45.0% | |
| GACGGCGATTGAGATTACTT+CGG | - | chr3_2:6172371-6172390 | None:intergenic | 45.0% | |
| CGGAAAAATTACCGTGTCAG+TGG | - | chr3_2:6172421-6172440 | None:intergenic | 45.0% | |
| !!! | ATATAATAAACATTAAATTT+TGG | - | chr3_2:6170501-6170520 | None:intergenic | 5.0% |
| !!! | TTTAGTTTTATAAAAAAAAA+CGG | - | chr3_2:6171063-6171082 | None:intergenic | 5.0% |
| !!! | TAAATTTTAAATCATATATA+TGG | + | chr3_2:6171103-6171122 | Msa0392820:intron | 5.0% |
| !! | AGAGCCTGATGGATTCTGGT+GGG | - | chr3_2:6168938-6168957 | None:intergenic | 50.0% |
| !! | CAACAGAGCCTGATGGATTC+TGG | - | chr3_2:6168942-6168961 | None:intergenic | 50.0% |
| GGTGATACAACAGAGCCTGA+TGG | - | chr3_2:6168949-6168968 | None:intergenic | 50.0% | |
| CAAGAAGAAAGGGTTGGGGT+CGG | - | chr3_2:6169023-6169042 | None:intergenic | 50.0% | |
| AATTCTCTGGCGGCCGAAAA+TGG | + | chr3_2:6169656-6169675 | Msa0392820:CDS | 50.0% | |
| GCCGAAAATGGTATCACCGA+TGG | + | chr3_2:6169668-6169687 | Msa0392820:CDS | 50.0% | |
| CTTAGTTCATCGGGCTCCAT+CGG | - | chr3_2:6169687-6169706 | None:intergenic | 50.0% | |
| GGGAAAGCTCTCGATTACTG+TGG | - | chr3_2:6170969-6170988 | None:intergenic | 50.0% | |
| GGCATTCTACAACTGTCGGT+AGG | + | chr3_2:6171251-6171270 | Msa0392820:intron | 50.0% | |
| TAGGGACAGGCTCATAGACT+AGG | + | chr3_2:6171270-6171289 | Msa0392820:intron | 50.0% | |
| TGAATGGATCAGGGATTCCG+TGG | + | chr3_2:6172208-6172227 | Msa0392820:intron | 50.0% | |
| ! | GCATGACTTGCAACCTGCAT+AGG | - | chr3_2:6172330-6172349 | None:intergenic | 50.0% |
| !! | CTGATGGATTCTGGTGGGAG+GGG | - | chr3_2:6168933-6168952 | None:intergenic | 55.0% |
| !! | CCTGATGGATTCTGGTGGGA+GGG | - | chr3_2:6168934-6168953 | None:intergenic | 55.0% |
| !! | CAGAGCCTGATGGATTCTGG+TGG | - | chr3_2:6168939-6168958 | None:intergenic | 55.0% |
| !! | AGTTGGTGCCGCCAGGATTA+TGG | - | chr3_2:6168973-6168992 | None:intergenic | 55.0% |
| AATCCTGGCGGCACCAACTA+TGG | + | chr3_2:6168974-6168993 | Msa0392820:CDS | 55.0% | |
| GTCGGAATCAGCACCTGCTA+CGG | - | chr3_2:6169005-6169024 | None:intergenic | 55.0% | |
| CTACAACTGTCGGTAGGGAC+AGG | + | chr3_2:6171257-6171276 | Msa0392820:intron | 55.0% | |
| TGGATCAGGGATTCCGTGGA+CGG | + | chr3_2:6172212-6172231 | Msa0392820:intron | 55.0% | |
| TTGTGCTCTTCCTCCGTCCA+CGG | - | chr3_2:6172228-6172247 | None:intergenic | 55.0% | |
| AGAGACTGGATCTACGGCGA+CGG | - | chr3_2:6172389-6172408 | None:intergenic | 55.0% | |
| ATTCTGGTGGGAGGGGTCGA+TGG | - | chr3_2:6168926-6168945 | None:intergenic | 60.0% | |
| CCCTCCCACCAGAATCCATC+AGG | + | chr3_2:6168931-6168950 | Msa0392820:CDS | 60.0% | |
| !! | GCCTGATGGATTCTGGTGGG+AGG | - | chr3_2:6168935-6168954 | None:intergenic | 60.0% |
| !! | TGGTGCCGCCAGGATTATGG+TGG | - | chr3_2:6168970-6168989 | None:intergenic | 60.0% |
| !! | AGACCATAGTTGGTGCCGCC+AGG | - | chr3_2:6168980-6168999 | None:intergenic | 60.0% |
| ATCAGGGATTCCGTGGACGG+AGG | + | chr3_2:6172215-6172234 | Msa0392820:intron | 60.0% | |
| CTGGTGGGAGGGGTCGATGG+TGG | - | chr3_2:6168923-6168942 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 6168917 | 6172455 | 6168917 | ID=Msa0392820;Name=Msa0392820 |
| chr3_2 | mRNA | 6168917 | 6172455 | 6168917 | ID=Msa0392820-mRNA-1;Parent=Msa0392820;Name=Msa0392820-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.33|1|1|3|0|162 |
| chr3_2 | exon | 6168917 | 6169047 | 6168917 | ID=Msa0392820-mRNA-1:exon:1580;Parent=Msa0392820-mRNA-1 |
| chr3_2 | exon | 6169617 | 6169738 | 6169617 | ID=Msa0392820-mRNA-1:exon:1581;Parent=Msa0392820-mRNA-1 |
| chr3_2 | exon | 6172220 | 6172455 | 6172220 | ID=Msa0392820-mRNA-1:exon:1582;Parent=Msa0392820-mRNA-1 |
| chr3_2 | CDS | 6168917 | 6169047 | 6168917 | ID=Msa0392820-mRNA-1:cds;Parent=Msa0392820-mRNA-1 |
| chr3_2 | CDS | 6169617 | 6169738 | 6169617 | ID=Msa0392820-mRNA-1:cds;Parent=Msa0392820-mRNA-1 |
| chr3_2 | CDS | 6172220 | 6172455 | 6172220 | ID=Msa0392820-mRNA-1:cds;Parent=Msa0392820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
