Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392980 | XP_039685680.1 | 84.731 | 799 | 102 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1388 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392980 | sp|Q9SZL8|FRS5_ARATH | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.25e-69 | 248 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392980 | D3YBB9 | 76.332 | 807 | 174 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1281 |
Gene ID | Type | Classification |
---|---|---|
Msa0392980 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392980 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 618 | 798 | 1 | 184 | 2.51e-102 | 313 |
Msa0392980 | MtrunA17_Chr2g0324011 | 30.709 | 635 | 364 | 12 | 36 | 665 | 8 | 571 | 3.18e-101 | 325 |
Msa0392980 | MtrunA17_Chr3g0082121 | 31.693 | 691 | 384 | 17 | 41 | 727 | 49 | 655 | 1.59e-100 | 326 |
Msa0392980 | MtrunA17_Chr1g0202341 | 29.606 | 635 | 366 | 17 | 34 | 662 | 50 | 609 | 7.14e-80 | 270 |
Msa0392980 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 4.82e-75 | 257 |
Msa0392980 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 6.08e-73 | 256 |
Msa0392980 | MtrunA17_Chr5g0448761 | 25.318 | 707 | 449 | 14 | 31 | 728 | 56 | 692 | 1.69e-68 | 241 |
Msa0392980 | MtrunA17_Chr2g0296781 | 27.688 | 679 | 405 | 20 | 39 | 708 | 1 | 602 | 1.82e-68 | 240 |
Msa0392980 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 2.33e-65 | 232 |
Msa0392980 | MtrunA17_Chr6g0477261 | 29.412 | 527 | 314 | 14 | 180 | 699 | 7 | 482 | 5.96e-65 | 229 |
Msa0392980 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 1.09e-62 | 213 |
Msa0392980 | MtrunA17_Chr2g0287651 | 25.755 | 629 | 387 | 13 | 39 | 662 | 79 | 632 | 1.17e-60 | 221 |
Msa0392980 | MtrunA17_Chr5g0441581 | 24.967 | 757 | 460 | 21 | 32 | 773 | 26 | 689 | 6.41e-59 | 213 |
Msa0392980 | MtrunA17_Chr5g0440451 | 24.294 | 708 | 429 | 16 | 34 | 721 | 42 | 662 | 9.38e-56 | 207 |
Msa0392980 | MtrunA17_Chr1g0207551 | 24.821 | 697 | 430 | 17 | 31 | 718 | 30 | 641 | 4.02e-54 | 201 |
Msa0392980 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 4.22e-54 | 196 |
Msa0392980 | MtrunA17_Chr7g0258861 | 35.948 | 306 | 172 | 6 | 36 | 336 | 8 | 294 | 4.83e-54 | 189 |
Msa0392980 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 1.72e-53 | 198 |
Msa0392980 | MtrunA17_Chr1g0198761 | 27.147 | 652 | 379 | 19 | 26 | 660 | 38 | 610 | 5.66e-53 | 197 |
Msa0392980 | MtrunA17_Chr1g0196541 | 23.584 | 759 | 492 | 20 | 39 | 794 | 1 | 674 | 1.26e-52 | 195 |
Msa0392980 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 10 | 221 | 719 | 111 | 557 | 3.13e-52 | 195 |
Msa0392980 | MtrunA17_Chr3g0080351 | 24.168 | 691 | 428 | 14 | 34 | 718 | 75 | 675 | 1.99e-48 | 184 |
Msa0392980 | MtrunA17_Chr2g0287061 | 24.066 | 669 | 377 | 19 | 41 | 694 | 189 | 741 | 5.51e-48 | 182 |
Msa0392980 | MtrunA17_Chr2g0290391 | 26.012 | 642 | 372 | 19 | 38 | 660 | 54 | 611 | 2.89e-47 | 179 |
Msa0392980 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 7.24e-47 | 177 |
Msa0392980 | MtrunA17_Chr2g0276841 | 25.984 | 635 | 374 | 21 | 49 | 669 | 84 | 636 | 3.12e-45 | 173 |
Msa0392980 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 4.28e-44 | 167 |
Msa0392980 | MtrunA17_Chr5g0431001 | 28.160 | 451 | 279 | 12 | 40 | 473 | 66 | 488 | 2.58e-42 | 161 |
Msa0392980 | MtrunA17_Chr2g0291591 | 26.052 | 499 | 313 | 14 | 16 | 499 | 44 | 501 | 6.31e-42 | 161 |
Msa0392980 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 5.24e-41 | 160 |
Msa0392980 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.35e-40 | 143 |
Msa0392980 | MtrunA17_Chr2g0294841 | 26.640 | 503 | 316 | 15 | 3 | 482 | 7 | 479 | 1.70e-35 | 144 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0392980 | AT4G38180.1 | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.27e-70 | 248 |
Msa0392980 | AT4G15090.1 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 1.98e-59 | 217 |
Msa0392980 | AT4G15090.5 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 1.98e-59 | 217 |
Msa0392980 | AT4G15090.3 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 1.98e-59 | 217 |
Msa0392980 | AT4G15090.2 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 1.98e-59 | 217 |
Msa0392980 | AT4G15090.4 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 1.98e-59 | 217 |
Msa0392980 | AT2G27110.2 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.21e-53 | 200 |
Msa0392980 | AT2G27110.1 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.21e-53 | 200 |
Msa0392980 | AT2G27110.3 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 4.79e-53 | 197 |
Msa0392980 | AT3G06250.2 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.09e-52 | 194 |
Msa0392980 | AT3G06250.1 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.09e-52 | 194 |
Msa0392980 | AT3G06250.3 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.09e-52 | 194 |
Msa0392980 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 4.48e-50 | 187 |
Msa0392980 | AT1G76320.2 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.42e-49 | 187 |
Msa0392980 | AT1G76320.1 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 1.51e-49 | 187 |
Msa0392980 | AT1G76320.4 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 1.51e-49 | 187 |
Msa0392980 | AT3G22170.2 | 22.774 | 685 | 425 | 16 | 34 | 708 | 69 | 659 | 1.95e-47 | 182 |
Msa0392980 | AT3G22170.1 | 22.774 | 685 | 425 | 16 | 34 | 708 | 69 | 659 | 1.95e-47 | 182 |
Msa0392980 | AT5G18960.2 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.93e-46 | 177 |
Msa0392980 | AT5G18960.1 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.93e-46 | 177 |
Msa0392980 | AT4G38170.1 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.24e-44 | 167 |
Msa0392980 | AT1G10240.2 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 7.83e-42 | 163 |
Msa0392980 | AT1G10240.1 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 7.83e-42 | 163 |
Msa0392980 | AT5G28530.1 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 1.27e-41 | 162 |
Msa0392980 | AT5G28530.3 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 6.99e-41 | 160 |
Msa0392980 | AT5G28530.2 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 6.99e-41 | 160 |
Msa0392980 | AT2G32250.5 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.45e-39 | 157 |
Msa0392980 | AT2G32250.2 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.79e-39 | 157 |
Msa0392980 | AT2G32250.4 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.79e-39 | 157 |
Msa0392980 | AT2G32250.6 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.32e-39 | 157 |
Msa0392980 | AT2G32250.1 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.32e-39 | 157 |
Msa0392980 | AT2G32250.3 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.32e-39 | 157 |
Msa0392980 | AT2G32250.8 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 1.26e-38 | 154 |
Msa0392980 | AT2G32250.7 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 1.42e-38 | 154 |
Msa0392980 | AT1G80010.1 | 23.556 | 658 | 370 | 24 | 41 | 662 | 101 | 661 | 3.74e-36 | 146 |
Msa0392980 | AT1G52520.1 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 2.25e-33 | 137 |
Msa0392980 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.43e-27 | 119 |
Msa0392980 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.24e-12 | 71.2 |
Msa0392980 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.52e-27 | 119 |
Msa0392980 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.40e-12 | 71.2 |
Msa0392980 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.59e-27 | 119 |
Msa0392980 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.47e-12 | 71.2 |
Msa0392980 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.11e-27 | 119 |
Msa0392980 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.53e-12 | 71.2 |
Msa0392980 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.11e-27 | 119 |
Msa0392980 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.53e-12 | 71.2 |
Msa0392980 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.14e-27 | 119 |
Msa0392980 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.25e-12 | 71.2 |
Msa0392980 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.14e-27 | 119 |
Msa0392980 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.25e-12 | 71.2 |
Msa0392980 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.53e-22 | 103 |
Msa0392980 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 1.04e-21 | 100 |
Find 125 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3_2:+6667542 | Msa0392980:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 3_2:+6667233 | Msa0392980:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 3_2:-6668368 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3_2:+6667500 | Msa0392980:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 3_2:+6666449 | Msa0392980:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 3_2:+6666952 | Msa0392980:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 3_2:+6666985 | Msa0392980:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 3_2:-6667079 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 3_2:-6668362 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 3_2:+6667274 | Msa0392980:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 3_2:+6668214 | Msa0392980:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 3_2:-6667097 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 3_2:-6666499 | None:intergenic |
TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 3_2:+6668611 | Msa0392980:three_prime_UTR |
TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 3_2:-6668430 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 3_2:+6667797 | Msa0392980:CDS |
TTCAGTAGTTTCATATCTAA+TGG | 0.357164 | 3_2:+6665586 | None:intergenic |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 3_2:+6667374 | Msa0392980:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 3_2:+6666506 | Msa0392980:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 3_2:+6666498 | Msa0392980:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 3_2:+6667373 | Msa0392980:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 3_2:-6668090 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 3_2:-6665969 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 3_2:+6668354 | Msa0392980:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3_2:-6668344 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3_2:+6667674 | Msa0392980:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 3_2:+6668239 | Msa0392980:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 3_2:+6665740 | Msa0392980:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 3_2:+6667922 | Msa0392980:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 3_2:-6667845 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 3_2:+6665811 | Msa0392980:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.425120 | 3_2:+6668206 | Msa0392980:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 3_2:-6667846 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_2:+6666146 | Msa0392980:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 3_2:+6666028 | Msa0392980:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 3_2:-6667090 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_2:+6666011 | Msa0392980:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 3_2:-6668023 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 3_2:+6665894 | Msa0392980:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 3_2:+6666176 | Msa0392980:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 3_2:+6665665 | Msa0392980:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 3_2:+6667164 | Msa0392980:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 3_2:+6667328 | Msa0392980:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 3_2:+6667923 | Msa0392980:CDS |
AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 3_2:+6668592 | Msa0392980:three_prime_UTR |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 3_2:+6665860 | Msa0392980:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 3_2:+6667880 | Msa0392980:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 3_2:+6666221 | Msa0392980:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_2:-6667676 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 3_2:-6666005 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 3_2:+6665798 | Msa0392980:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 3_2:+6666289 | Msa0392980:CDS |
ATGTCTGTGAACCATCTGTT+GGG | 0.488294 | 3_2:+6668315 | Msa0392980:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 3_2:-6666116 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 3_2:+6665854 | Msa0392980:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3_2:+6667690 | Msa0392980:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 3_2:-6666965 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 3_2:+6667275 | Msa0392980:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 3_2:+6666302 | Msa0392980:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3_2:+6667514 | Msa0392980:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 3_2:-6667594 | None:intergenic |
AATGAAGCTCTTTCGAAACC+AGG | 0.496588 | 3_2:+6666356 | Msa0392980:CDS |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 3_2:+6666208 | Msa0392980:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3_2:-6666394 | None:intergenic |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 3_2:-6666104 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 3_2:+6667361 | Msa0392980:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 3_2:+6667859 | Msa0392980:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 3_2:-6666260 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3_2:+6667533 | Msa0392980:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 3_2:+6667379 | Msa0392980:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 3_2:+6666064 | Msa0392980:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 3_2:-6667839 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3_2:-6667482 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 3_2:+6665905 | Msa0392980:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 3_2:+6667860 | Msa0392980:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3_2:-6667671 | None:intergenic |
GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 3_2:+6668420 | Msa0392980:CDS |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 3_2:+6667879 | Msa0392980:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3_2:-6667477 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3_2:+6667691 | Msa0392980:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3_2:+6665906 | Msa0392980:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 3_2:+6665730 | Msa0392980:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 3_2:-6667110 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 3_2:+6668080 | Msa0392980:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 3_2:+6665689 | Msa0392980:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 3_2:+6666224 | Msa0392980:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 3_2:+6668166 | Msa0392980:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 3_2:+6666063 | Msa0392980:CDS |
ATTCCTCAACGGTGTTCTTG+AGG | 0.575305 | 3_2:+6668202 | Msa0392980:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 3_2:-6667595 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 3_2:-6668326 | None:intergenic |
TCAACGGTGTTCTTGAGGCA+GGG | 0.583882 | 3_2:+6668207 | Msa0392980:CDS |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 3_2:-6667616 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 3_2:+6665654 | Msa0392980:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 3_2:+6666215 | Msa0392980:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 3_2:+6667096 | Msa0392980:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 3_2:+6667829 | Msa0392980:CDS |
GATGTCTGTGAACCATCTGT+TGG | 0.595331 | 3_2:+6668314 | Msa0392980:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 3_2:-6668282 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 3_2:+6666295 | Msa0392980:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 3_2:+6666209 | Msa0392980:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 3_2:+6666298 | Msa0392980:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 3_2:+6668169 | Msa0392980:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 3_2:+6667592 | Msa0392980:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_2:+6667677 | Msa0392980:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 3_2:-6668114 | None:intergenic |
CGAGGCTTTAACAAATTAAG+CGG | 0.612886 | 3_2:+6668463 | Msa0392980:exon |
GAGGCTTTAACAAATTAAGC+GGG | 0.612910 | 3_2:+6668464 | Msa0392980:exon |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 3_2:-6665954 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 3_2:-6667330 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 3_2:+6666229 | Msa0392980:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 3_2:-6667844 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 3_2:+6667165 | Msa0392980:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 3_2:-6668087 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_2:+6667515 | Msa0392980:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 3_2:-6668065 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 3_2:-6667636 | None:intergenic |
CTGCCTCAAGAACACCGTTG+AGG | 0.660876 | 3_2:-6668205 | None:intergenic |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 3_2:-6667941 | None:intergenic |
GCATCTGAAATATTCCTCAA+CGG | 0.665484 | 3_2:+6668191 | Msa0392980:CDS |
TCAAACCATATACACAGACC+AGG | 0.671057 | 3_2:+6667092 | Msa0392980:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 3_2:+6667924 | Msa0392980:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 3_2:+6667775 | Msa0392980:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 3_2:+6667776 | Msa0392980:CDS |
GAAGCAAAAGAAAGATGACG+AGG | 0.706472 | 3_2:+6668445 | Msa0392980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr3_2:6668494-6668513 | Msa0392980:three_prime_UTR | 15.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr3_2:6665798-6665817 | Msa0392980:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr3_2:6665854-6665873 | Msa0392980:CDS | 20.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr3_2:6666063-6666082 | Msa0392980:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr3_2:6666064-6666083 | Msa0392980:CDS | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr3_2:6666653-6666672 | Msa0392980:intron | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr3_2:6666681-6666700 | Msa0392980:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr3_2:6667303-6667322 | Msa0392980:CDS | 20.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr3_2:6665689-6665708 | Msa0392980:CDS | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr3_2:6665730-6665749 | Msa0392980:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr3_2:6665850-6665869 | None:intergenic | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr3_2:6665860-6665879 | Msa0392980:CDS | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr3_2:6666176-6666195 | Msa0392980:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr3_2:6666498-6666517 | Msa0392980:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr3_2:6666524-6666543 | None:intergenic | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr3_2:6666571-6666590 | Msa0392980:intron | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr3_2:6666673-6666692 | Msa0392980:intron | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr3_2:6666680-6666699 | Msa0392980:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr3_2:6666929-6666948 | Msa0392980:intron | 25.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr3_2:6667141-6667160 | None:intergenic | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr3_2:6667233-6667252 | Msa0392980:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr3_2:6667307-6667326 | Msa0392980:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr3_2:6667500-6667519 | Msa0392980:CDS | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr3_2:6667639-6667658 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr3_2:6667674-6667693 | None:intergenic | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr3_2:6667674-6667693 | Msa0392980:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr3_2:6667775-6667794 | Msa0392980:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr3_2:6667776-6667795 | Msa0392980:CDS | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr3_2:6668525-6668544 | Msa0392980:three_prime_UTR | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr3_2:6668592-6668611 | Msa0392980:three_prime_UTR | 25.0% |
ATATTAACTTCATCTGAGAG+TGG | + | chr3_2:6665654-6665673 | Msa0392980:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr3_2:6665740-6665759 | Msa0392980:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr3_2:6665894-6665913 | Msa0392980:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr3_2:6665905-6665924 | Msa0392980:CDS | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr3_2:6665906-6665925 | Msa0392980:CDS | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr3_2:6665995-6666014 | Msa0392980:CDS | 30.0% | |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr3_2:6666028-6666047 | Msa0392980:CDS | 30.0% |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr3_2:6666107-6666126 | None:intergenic | 30.0% |
AGAACATCTTATGAAGTGAT+GGG | + | chr3_2:6666209-6666228 | Msa0392980:CDS | 30.0% | |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr3_2:6666253-6666272 | Msa0392980:CDS | 30.0% |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr3_2:6666263-6666282 | None:intergenic | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr3_2:6666377-6666396 | None:intergenic | 30.0% | |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr3_2:6666411-6666430 | Msa0392980:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr3_2:6666412-6666431 | Msa0392980:CDS | 30.0% |
CAACAAGATTATGCTCTATT+TGG | + | chr3_2:6666449-6666468 | Msa0392980:CDS | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr3_2:6666502-6666521 | None:intergenic | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr3_2:6666506-6666525 | Msa0392980:CDS | 30.0% | |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr3_2:6666585-6666604 | Msa0392980:intron | 30.0% |
CTGGTATATGTGTGTTAATT+TGG | + | chr3_2:6666610-6666629 | Msa0392980:intron | 30.0% | |
AAACACATATGATCTTTCCA+TGG | - | chr3_2:6666744-6666763 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr3_2:6666888-6666907 | Msa0392980:intron | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr3_2:6666968-6666987 | None:intergenic | 30.0% | |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr3_2:6667082-6667101 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr3_2:6667132-6667151 | Msa0392980:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr3_2:6667144-6667163 | Msa0392980:CDS | 30.0% |
GAGAATGCAAAGAAAAATCT+CGG | + | chr3_2:6667189-6667208 | Msa0392980:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr3_2:6667274-6667293 | Msa0392980:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr3_2:6667275-6667294 | Msa0392980:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr3_2:6667485-6667504 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr3_2:6667619-6667638 | None:intergenic | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr3_2:6667679-6667698 | None:intergenic | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr3_2:6667677-6667696 | Msa0392980:CDS | 30.0% | |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr3_2:6667734-6667753 | Msa0392980:CDS | 30.0% |
ATTATGATCTTCAAACCTTG+GGG | - | chr3_2:6667847-6667866 | None:intergenic | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr3_2:6667848-6667867 | None:intergenic | 30.0% | |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr3_2:6667859-6667878 | Msa0392980:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr3_2:6667860-6667879 | Msa0392980:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr3_2:6667956-6667975 | Msa0392980:CDS | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr3_2:6667959-6667978 | Msa0392980:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr3_2:6668024-6668043 | Msa0392980:CDS | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr3_2:6668239-6668258 | Msa0392980:CDS | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr3_2:6668347-6668366 | None:intergenic | 30.0% |
AAGAAAGACCAAATCCAATT+AGG | + | chr3_2:6668354-6668373 | Msa0392980:CDS | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr3_2:6668365-6668384 | None:intergenic | 30.0% | |
!!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr3_2:6665626-6665645 | Msa0392980:exon | 35.0% |
ATAACACTGGATTCTCTGTT+AGG | + | chr3_2:6665811-6665830 | Msa0392980:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr3_2:6665931-6665950 | Msa0392980:CDS | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr3_2:6665972-6665991 | None:intergenic | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr3_2:6665989-6666008 | Msa0392980:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr3_2:6665994-6666013 | Msa0392980:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr3_2:6666146-6666165 | Msa0392980:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr3_2:6666208-6666227 | Msa0392980:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr3_2:6666289-6666308 | Msa0392980:CDS | 35.0% | |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr3_2:6666591-6666610 | Msa0392980:intron | 35.0% |
TGTACAGAGCATAAATTCCA+AGG | - | chr3_2:6666720-6666739 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr3_2:6666985-6667004 | Msa0392980:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr3_2:6667028-6667047 | Msa0392980:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr3_2:6667157-6667176 | Msa0392980:CDS | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr3_2:6667317-6667336 | Msa0392980:CDS | 35.0% |
CTCATTCAAATCGTATGCAT+TGG | + | chr3_2:6667361-6667380 | Msa0392980:CDS | 35.0% | |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr3_2:6667374-6667393 | Msa0392980:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3_2:6667444-6667463 | Msa0392980:CDS | 35.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr3_2:6667514-6667533 | Msa0392980:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr3_2:6667515-6667534 | Msa0392980:CDS | 35.0% | |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr3_2:6667797-6667816 | Msa0392980:CDS | 35.0% |
CGATTATGATCTTCAAACCT+TGG | - | chr3_2:6667849-6667868 | None:intergenic | 35.0% | |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr3_2:6667966-6667985 | Msa0392980:CDS | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr3_2:6668026-6668045 | None:intergenic | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr3_2:6668027-6668046 | Msa0392980:CDS | 35.0% |
! | GCATCTGAAATATTCCTCAA+CGG | + | chr3_2:6668191-6668210 | Msa0392980:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr3_2:6668293-6668312 | None:intergenic | 35.0% |
GACAGAAATTCCTTATAGCT+CGG | + | chr3_2:6668420-6668439 | Msa0392980:CDS | 35.0% | |
! | CGAGGCTTTAACAAATTAAG+CGG | + | chr3_2:6668463-6668482 | Msa0392980:exon | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr3_2:6668464-6668483 | Msa0392980:exon | 35.0% |
ATCTGAGAGTGGACAATTGA+CGG | + | chr3_2:6665665-6665684 | Msa0392980:CDS | 40.0% | |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr3_2:6665945-6665964 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr3_2:6666215-6666234 | Msa0392980:CDS | 40.0% |
AATGAAGCTCTTTCGAAACC+AGG | + | chr3_2:6666356-6666375 | Msa0392980:CDS | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | - | chr3_2:6666423-6666442 | None:intergenic | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr3_2:6666724-6666743 | Msa0392980:intron | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr3_2:6666834-6666853 | Msa0392980:intron | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr3_2:6666838-6666857 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr3_2:6666952-6666971 | Msa0392980:intron | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr3_2:6667093-6667112 | None:intergenic | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr3_2:6667092-6667111 | Msa0392980:CDS | 40.0% | |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr3_2:6667373-6667392 | Msa0392980:CDS | 40.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr3_2:6667480-6667499 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr3_2:6667542-6667561 | Msa0392980:CDS | 40.0% |
TATGAGGAGGACACAACAAA+AGG | + | chr3_2:6667690-6667709 | Msa0392980:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr3_2:6667691-6667710 | Msa0392980:CDS | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr3_2:6667829-6667848 | Msa0392980:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr3_2:6667922-6667941 | Msa0392980:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr3_2:6667923-6667942 | Msa0392980:CDS | 40.0% | |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr3_2:6667969-6667988 | Msa0392980:CDS | 40.0% |
GATTTCAGCTTATCGACAGA+CGG | - | chr3_2:6668068-6668087 | None:intergenic | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr3_2:6668080-6668099 | Msa0392980:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr3_2:6668090-6668109 | None:intergenic | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr3_2:6668093-6668112 | None:intergenic | 40.0% | |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr3_2:6668285-6668304 | None:intergenic | 40.0% |
ATGTCTGTGAACCATCTGTT+GGG | + | chr3_2:6668315-6668334 | Msa0392980:CDS | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr3_2:6668371-6668390 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr3_2:6668433-6668452 | None:intergenic | 40.0% | |
GAAGCAAAAGAAAGATGACG+AGG | + | chr3_2:6668445-6668464 | Msa0392980:CDS | 40.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr3_2:6665957-6665976 | None:intergenic | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr3_2:6665999-6666018 | Msa0392980:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr3_2:6666008-6666027 | None:intergenic | 45.0% | |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3_2:6666011-6666030 | Msa0392980:CDS | 45.0% |
CTCAAGTAGCACAAATGCTC+TGG | - | chr3_2:6666119-6666138 | None:intergenic | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr3_2:6666295-6666314 | Msa0392980:CDS | 45.0% | |
AACTCGTCAAAAGGAGATGG+TGG | + | chr3_2:6666298-6666317 | Msa0392980:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr3_2:6666397-6666416 | None:intergenic | 45.0% | |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr3_2:6666419-6666438 | Msa0392980:CDS | 45.0% |
TGGGTGATTCTATCTTGCCT+TGG | + | chr3_2:6666700-6666719 | Msa0392980:intron | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr3_2:6667333-6667352 | None:intergenic | 45.0% | |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr3_2:6667379-6667398 | Msa0392980:CDS | 45.0% |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr3_2:6667396-6667415 | Msa0392980:CDS | 45.0% |
GAGGGATAATCATGCTGAGT+TGG | + | chr3_2:6667533-6667552 | Msa0392980:CDS | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr3_2:6667592-6667611 | Msa0392980:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr3_2:6667842-6667861 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr3_2:6667924-6667943 | Msa0392980:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr3_2:6667944-6667963 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr3_2:6668117-6668136 | None:intergenic | 45.0% | |
ATTCCTCAACGGTGTTCTTG+AGG | + | chr3_2:6668202-6668221 | Msa0392980:CDS | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr3_2:6668214-6668233 | Msa0392980:CDS | 45.0% | |
GATGTCTGTGAACCATCTGT+TGG | + | chr3_2:6668314-6668333 | Msa0392980:CDS | 45.0% | |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr3_2:6666221-6666240 | Msa0392980:CDS | 50.0% |
ACCATATACACAGACCAGGC+TGG | + | chr3_2:6667096-6667115 | Msa0392980:CDS | 50.0% | |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr3_2:6667100-6667119 | None:intergenic | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr3_2:6667164-6667183 | Msa0392980:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr3_2:6667165-6667184 | Msa0392980:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr3_2:6667328-6667347 | Msa0392980:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr3_2:6667597-6667616 | None:intergenic | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr3_2:6667879-6667898 | Msa0392980:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr3_2:6667880-6667899 | Msa0392980:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr3_2:6668166-6668185 | Msa0392980:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr3_2:6668207-6668226 | Msa0392980:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr3_2:6668329-6668348 | None:intergenic | 50.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr3_2:6666224-6666243 | Msa0392980:CDS | 55.0% |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr3_2:6666302-6666321 | Msa0392980:CDS | 55.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr3_2:6667113-6667132 | None:intergenic | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr3_2:6667598-6667617 | None:intergenic | 55.0% | |
CTGCCTCAAGAACACCGTTG+AGG | - | chr3_2:6668208-6668227 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr3_2:6668206-6668225 | Msa0392980:CDS | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr3_2:6668220-6668239 | Msa0392980:CDS | 55.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr3_2:6666229-6666248 | Msa0392980:CDS | 60.0% | |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr3_2:6668169-6668188 | Msa0392980:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 6665600 | 6668633 | 6665600 | ID=Msa0392980;Name=Msa0392980 |
chr3_2 | mRNA | 6665600 | 6668633 | 6665600 | ID=Msa0392980-mRNA-1;Parent=Msa0392980;Name=Msa0392980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
chr3_2 | exon | 6665600 | 6666527 | 6665600 | ID=Msa0392980-mRNA-1:exon:1647;Parent=Msa0392980-mRNA-1 |
chr3_2 | exon | 6666962 | 6668633 | 6666962 | ID=Msa0392980-mRNA-1:exon:1648;Parent=Msa0392980-mRNA-1 |
chr3_2 | five_prime_UTR | 6665600 | 6665644 | 6665600 | ID=Msa0392980-mRNA-1:five_prime_utr;Parent=Msa0392980-mRNA-1 |
chr3_2 | CDS | 6665645 | 6666527 | 6665645 | ID=Msa0392980-mRNA-1:cds;Parent=Msa0392980-mRNA-1 |
chr3_2 | CDS | 6666962 | 6668481 | 6666962 | ID=Msa0392980-mRNA-1:cds;Parent=Msa0392980-mRNA-1 |
chr3_2 | three_prime_UTR | 6668482 | 6668633 | 6668482 | ID=Msa0392980-mRNA-1:three_prime_utr;Parent=Msa0392980-mRNA-1 |
Gene Sequence |
Protein sequence |