Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393630 | XP_003598191.1 | 82.432 | 74 | 13 | 0 | 99 | 172 | 1 | 74 | 3.70e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393630 | G7IVM3 | 82.432 | 74 | 13 | 0 | 99 | 172 | 1 | 74 | 1.76e-31 | 124 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0393630 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393630 | MtrunA17_Chr3g0079061 | 82.432 | 74 | 13 | 0 | 99 | 172 | 1 | 74 | 3.40e-35 | 124 |
| Msa0393630 | MtrunA17_Chr3g0079091 | 84.932 | 73 | 11 | 0 | 99 | 171 | 1 | 73 | 6.37e-30 | 108 |
| Msa0393630 | MtrunA17_Chr3g0079131 | 70.423 | 71 | 21 | 0 | 99 | 169 | 1 | 71 | 4.33e-19 | 82.4 |
| Msa0393630 | MtrunA17_Chr8g0346271 | 55.357 | 56 | 25 | 0 | 7 | 62 | 9 | 64 | 2.29e-13 | 62.4 |
| Msa0393630 | MtrunA17_Chr4g0018761 | 45.763 | 59 | 32 | 0 | 101 | 159 | 4 | 62 | 3.17e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCATCCCCATTGAATA+TGG | 0.196483 | 3_2:+7710296 | Msa0393630:CDS |
| CAGATACTTGGTTGGTGATT+GGG | 0.258868 | 3_2:-7711721 | None:intergenic |
| TTTCTTCGATTAACAATTGA+TGG | 0.305624 | 3_2:-7711797 | None:intergenic |
| ATCATCATTATGTAACTTGA+TGG | 0.337748 | 3_2:+7710419 | Msa0393630:CDS |
| CATGGCAATGGGGCGGGGTC+GGG | 0.339892 | 3_2:-7710378 | None:intergenic |
| TCAGATACTTGGTTGGTGAT+TGG | 0.346299 | 3_2:-7711722 | None:intergenic |
| GCATGGCAATGGGGCGGGGT+CGG | 0.354134 | 3_2:-7710379 | None:intergenic |
| AGGAGTAGGGGATGAGGATC+GGG | 0.360535 | 3_2:+7710341 | Msa0393630:CDS |
| GGTAGGCATGGCAATGGGGC+GGG | 0.371541 | 3_2:-7710384 | None:intergenic |
| CTACCATTGTTCTCCATAGT+TGG | 0.371709 | 3_2:-7711602 | None:intergenic |
| TGCGGGGACGGGGATGGGGC+TGG | 0.372786 | 3_2:+7710236 | None:intergenic |
| TCCCCGTCCCCAATGGGTTC+AGG | 0.379150 | 3_2:-7710263 | None:intergenic |
| GTGGTGAAGTTGTAAGATTT+TGG | 0.382362 | 3_2:-7711529 | None:intergenic |
| CTGGAGTACCTGAACCCATT+GGG | 0.386530 | 3_2:+7710255 | Msa0393630:CDS |
| GTAGGCATGGCAATGGGGCG+GGG | 0.397507 | 3_2:-7710383 | None:intergenic |
| TGGTAGGCATGGCAATGGGG+CGG | 0.404533 | 3_2:-7710385 | None:intergenic |
| CAGATAAGTATGTAGGAGTA+GGG | 0.414264 | 3_2:+7710328 | Msa0393630:CDS |
| AGATACTTGGTTGGTGATTG+GGG | 0.424806 | 3_2:-7711720 | None:intergenic |
| ACAGATAAGTATGTAGGAGT+AGG | 0.428103 | 3_2:+7710327 | Msa0393630:CDS |
| CAACCAAGTATTCAGATACT+TGG | 0.428471 | 3_2:-7711733 | None:intergenic |
| GCATTGGTAGGCATGGCAAT+GGG | 0.428941 | 3_2:-7710389 | None:intergenic |
| CAACCAAGTATCTGAATACT+TGG | 0.428998 | 3_2:+7711730 | Msa0393630:CDS |
| ATCTCATCCCCGTCCCCAAT+GGG | 0.431739 | 3_2:-7710269 | None:intergenic |
| TTCTCATCCCCATTGAATAT+GGG | 0.442543 | 3_2:+7710297 | Msa0393630:CDS |
| TTACCCTACCCATATTCAAT+GGG | 0.446748 | 3_2:-7710305 | None:intergenic |
| GATAGAGTGAGTTGGATGTT+TGG | 0.448812 | 3_2:-7711762 | None:intergenic |
| CACAATCTTCAATCTTTGAA+AGG | 0.448970 | 3_2:+7711828 | Msa0393630:CDS |
| AGGGTAACAGATAAGTATGT+AGG | 0.455129 | 3_2:+7710321 | Msa0393630:CDS |
| TATTCCTACCAAAGTTTGAC+AGG | 0.460181 | 3_2:-7711866 | None:intergenic |
| GTTACCCTACCCATATTCAA+TGG | 0.460751 | 3_2:-7710306 | None:intergenic |
| ATCTGAATACTTGGTTGAGT+TGG | 0.468186 | 3_2:+7711739 | Msa0393630:CDS |
| AATTGTGCCCTGTCAAACTT+TGG | 0.474964 | 3_2:+7711858 | Msa0393630:CDS |
| ACAATCTTCAATCTTTGAAA+GGG | 0.476782 | 3_2:+7711829 | Msa0393630:CDS |
| TACCTGAACCCATTGGGGAC+GGG | 0.478480 | 3_2:+7710261 | Msa0393630:CDS |
| TAGGAGTAGGGGATGAGGAT+CGG | 0.480260 | 3_2:+7710340 | Msa0393630:CDS |
| ACCTGAACCCATTGGGGACG+GGG | 0.487699 | 3_2:+7710262 | Msa0393630:CDS |
| GGATTCGTAATTTGGCATAG+TGG | 0.490151 | 3_2:-7711688 | None:intergenic |
| GCTGGAGTACCTGAACCCAT+TGG | 0.493101 | 3_2:+7710254 | Msa0393630:CDS |
| GATGTAGAGATAGAGTGAGT+TGG | 0.497788 | 3_2:-7711770 | None:intergenic |
| CGCATTGGTAGGCATGGCAA+TGG | 0.502210 | 3_2:-7710390 | None:intergenic |
| GTATGTAGGAGTAGGGGATG+AGG | 0.512492 | 3_2:+7710335 | Msa0393630:CDS |
| AATCTCATCCCCGTCCCCAA+TGG | 0.520092 | 3_2:-7710270 | None:intergenic |
| GATTCGTAATTTGGCATAGT+GGG | 0.532810 | 3_2:-7711687 | None:intergenic |
| TCCTCCCAAAGCTTTCCCAT+TGG | 0.533471 | 3_2:-7711654 | None:intergenic |
| GTACCTGAACCCATTGGGGA+CGG | 0.544349 | 3_2:+7710260 | Msa0393630:CDS |
| AATGATGATAATACACGCAT+TGG | 0.548918 | 3_2:-7710405 | None:intergenic |
| CAAGTATTCAGATACTTGGT+TGG | 0.557604 | 3_2:-7711729 | None:intergenic |
| CATCCCCATTGAATATGGGT+AGG | 0.566425 | 3_2:+7710301 | Msa0393630:CDS |
| GATACTTGGTTGGTGATTGG+GGG | 0.574290 | 3_2:-7711719 | None:intergenic |
| GTGCCCTGTCAAACTTTGGT+AGG | 0.575115 | 3_2:+7711862 | Msa0393630:CDS |
| ATGATAATACACGCATTGGT+AGG | 0.576477 | 3_2:-7710401 | None:intergenic |
| ATCCCCATTGAATATGGGTA+GGG | 0.579443 | 3_2:+7710302 | Msa0393630:CDS |
| AATACACGCATTGGTAGGCA+TGG | 0.592243 | 3_2:-7710396 | None:intergenic |
| AGATAAGTATGTAGGAGTAG+GGG | 0.602012 | 3_2:+7710329 | Msa0393630:CDS |
| TCCAATGGGAAAGCTTTGGG+AGG | 0.618334 | 3_2:+7711653 | Msa0393630:CDS |
| GTAGGGGATGAGGATCGGGA+AGG | 0.645422 | 3_2:+7710345 | Msa0393630:CDS |
| CATTGGTAGGCATGGCAATG+GGG | 0.646188 | 3_2:-7710388 | None:intergenic |
| TCTCCAACTATGGAGAACAA+TGG | 0.649885 | 3_2:+7711599 | Msa0393630:CDS |
| AAATACAAAGAGAGCAAAGG+GGG | 0.651082 | 3_2:+7711560 | Msa0393630:CDS |
| TGGAGTACCTGAACCCATTG+GGG | 0.660798 | 3_2:+7710256 | Msa0393630:CDS |
| ATTCCTACCAAAGTTTGACA+GGG | 0.694573 | 3_2:-7711865 | None:intergenic |
| TACCCTACCCATATTCAATG+GGG | 0.731866 | 3_2:-7710304 | None:intergenic |
| AAAATACAAAGAGAGCAAAG+GGG | 0.744173 | 3_2:+7711559 | Msa0393630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTATTTATTTTTTA+AGG | - | chr3_2:7711291-7711310 | None:intergenic | 0.0% |
| !!! | ATATTTTTATTTATTTTTTA+AGG | - | chr3_2:7711291-7711310 | None:intergenic | 0.0% |
| !! | TTATTATGAAAAAATATTTG+GGG | + | chr3_2:7711115-7711134 | Msa0393630:intron | 10.0% |
| !!! | TGTAAAATAATTTTTTAAGA+AGG | + | chr3_2:7711342-7711361 | Msa0393630:intron | 10.0% |
| !! | TGAACAAAAAATTAAAAAAA+TGG | - | chr3_2:7711402-7711421 | None:intergenic | 10.0% |
| !! | TTATTATGAAAAAATATTTG+GGG | + | chr3_2:7711115-7711134 | Msa0393630:intron | 10.0% |
| !!! | TGTAAAATAATTTTTTAAGA+AGG | + | chr3_2:7711342-7711361 | Msa0393630:intron | 10.0% |
| !! | TGAACAAAAAATTAAAAAAA+TGG | - | chr3_2:7711402-7711421 | None:intergenic | 10.0% |
| !! | TAACATGAACATAAATTTAT+GGG | - | chr3_2:7710519-7710538 | None:intergenic | 15.0% |
| !! | AAAAACAACAAATAAATAGA+AGG | - | chr3_2:7710768-7710787 | None:intergenic | 15.0% |
| !!! | TGAAATAAAATTTTAACAAG+AGG | - | chr3_2:7710874-7710893 | None:intergenic | 15.0% |
| !!! | AATTGACGATATTTTTATAT+GGG | - | chr3_2:7711316-7711335 | None:intergenic | 15.0% |
| !! | TAACATGAACATAAATTTAT+GGG | - | chr3_2:7710519-7710538 | None:intergenic | 15.0% |
| !! | AAAAACAACAAATAAATAGA+AGG | - | chr3_2:7710768-7710787 | None:intergenic | 15.0% |
| !!! | TGAAATAAAATTTTAACAAG+AGG | - | chr3_2:7710874-7710893 | None:intergenic | 15.0% |
| !!! | AATTGACGATATTTTTATAT+GGG | - | chr3_2:7711316-7711335 | None:intergenic | 15.0% |
| !! | CTAACATGAACATAAATTTA+TGG | - | chr3_2:7710520-7710539 | None:intergenic | 20.0% |
| !! | GAGAAAATCTTAAAAACATT+TGG | - | chr3_2:7710929-7710948 | None:intergenic | 20.0% |
| !!! | ATTGACGATATTTTTATATG+GGG | - | chr3_2:7711315-7711334 | None:intergenic | 20.0% |
| !!! | CAATTGACGATATTTTTATA+TGG | - | chr3_2:7711317-7711336 | None:intergenic | 20.0% |
| !! | CATATAAAAATATCGTCAAT+TGG | + | chr3_2:7711315-7711334 | Msa0393630:intron | 20.0% |
| !! | CTAACATGAACATAAATTTA+TGG | - | chr3_2:7710520-7710539 | None:intergenic | 20.0% |
| !! | GAGAAAATCTTAAAAACATT+TGG | - | chr3_2:7710929-7710948 | None:intergenic | 20.0% |
| !!! | ATTGACGATATTTTTATATG+GGG | - | chr3_2:7711315-7711334 | None:intergenic | 20.0% |
| !!! | CAATTGACGATATTTTTATA+TGG | - | chr3_2:7711317-7711336 | None:intergenic | 20.0% |
| !! | CATATAAAAATATCGTCAAT+TGG | + | chr3_2:7711315-7711334 | Msa0393630:intron | 20.0% |
| ! | ATCATCATTATGTAACTTGA+TGG | + | chr3_2:7710419-7710438 | Msa0393630:CDS | 25.0% |
| ! | GTATTAGAAAGTTTAGATGT+AGG | + | chr3_2:7710444-7710463 | Msa0393630:intron | 25.0% |
| ! | CAATAATACTTAGGTTTACT+TGG | - | chr3_2:7710495-7710514 | None:intergenic | 25.0% |
| ! | TTTATGGGACAATAATACTT+AGG | - | chr3_2:7710504-7710523 | None:intergenic | 25.0% |
| !!! | TCAGTAAAATTGATGATGTT+TGG | - | chr3_2:7710636-7710655 | None:intergenic | 25.0% |
| ! | AAAAAATCTTTCAACGTCAA+CGG | + | chr3_2:7710666-7710685 | Msa0393630:intron | 25.0% |
| !! | TTGCATGGCTTAAATATTTT+GGG | - | chr3_2:7710800-7710819 | None:intergenic | 25.0% |
| ! | ATAATAATAGGATAGCACTA+AGG | - | chr3_2:7711102-7711121 | None:intergenic | 25.0% |
| !!! | GGATCCATTTTTCTTTATAA+AGG | + | chr3_2:7711505-7711524 | Msa0393630:intron | 25.0% |
| ! | TGGACCTTTATAAAGAAAAA+TGG | - | chr3_2:7711512-7711531 | None:intergenic | 25.0% |
| !!! | TCTTTGTATTTTTGTTTGTG+TGG | - | chr3_2:7711551-7711570 | None:intergenic | 25.0% |
| ! | AAAAATACAAAGAGAGCAAA+GGG | + | chr3_2:7711558-7711577 | Msa0393630:CDS | 25.0% |
| ! | TTTCTTCGATTAACAATTGA+TGG | - | chr3_2:7711800-7711819 | None:intergenic | 25.0% |
| !! | ACAATCTTCAATCTTTGAAA+GGG | + | chr3_2:7711829-7711848 | Msa0393630:CDS | 25.0% |
| ! | ATCATCATTATGTAACTTGA+TGG | + | chr3_2:7710419-7710438 | Msa0393630:CDS | 25.0% |
| ! | GTATTAGAAAGTTTAGATGT+AGG | + | chr3_2:7710444-7710463 | Msa0393630:intron | 25.0% |
| ! | CAATAATACTTAGGTTTACT+TGG | - | chr3_2:7710495-7710514 | None:intergenic | 25.0% |
| ! | TTTATGGGACAATAATACTT+AGG | - | chr3_2:7710504-7710523 | None:intergenic | 25.0% |
| !!! | TCAGTAAAATTGATGATGTT+TGG | - | chr3_2:7710636-7710655 | None:intergenic | 25.0% |
| ! | AAAAAATCTTTCAACGTCAA+CGG | + | chr3_2:7710666-7710685 | Msa0393630:intron | 25.0% |
| !! | TTGCATGGCTTAAATATTTT+GGG | - | chr3_2:7710800-7710819 | None:intergenic | 25.0% |
| ! | ATAATAATAGGATAGCACTA+AGG | - | chr3_2:7711102-7711121 | None:intergenic | 25.0% |
| !!! | GGATCCATTTTTCTTTATAA+AGG | + | chr3_2:7711505-7711524 | Msa0393630:intron | 25.0% |
| ! | TGGACCTTTATAAAGAAAAA+TGG | - | chr3_2:7711512-7711531 | None:intergenic | 25.0% |
| !!! | TCTTTGTATTTTTGTTTGTG+TGG | - | chr3_2:7711551-7711570 | None:intergenic | 25.0% |
| ! | AAAAATACAAAGAGAGCAAA+GGG | + | chr3_2:7711558-7711577 | Msa0393630:CDS | 25.0% |
| ! | TTTCTTCGATTAACAATTGA+TGG | - | chr3_2:7711800-7711819 | None:intergenic | 25.0% |
| !! | ACAATCTTCAATCTTTGAAA+GGG | + | chr3_2:7711829-7711848 | Msa0393630:CDS | 25.0% |
| AATGATGATAATACACGCAT+TGG | - | chr3_2:7710408-7710427 | None:intergenic | 30.0% | |
| GATGTGTAGTAAAACTAGAT+GGG | - | chr3_2:7710555-7710574 | None:intergenic | 30.0% | |
| TAGATATGAGAAAGTTGTGT+TGG | - | chr3_2:7710577-7710596 | None:intergenic | 30.0% | |
| TGCTTGATTTATGTTTGTGT+TGG | + | chr3_2:7710600-7710619 | Msa0393630:intron | 30.0% | |
| !! | GTAAAATTGATGATGTTTGG+TGG | - | chr3_2:7710633-7710652 | None:intergenic | 30.0% |
| TAAATCATCAAACCCTAGAT+GGG | - | chr3_2:7710740-7710759 | None:intergenic | 30.0% | |
| ! | GTTGCATGGCTTAAATATTT+TGG | - | chr3_2:7710801-7710820 | None:intergenic | 30.0% |
| ! | TATTTAAGCCATGCAACTTT+TGG | + | chr3_2:7710804-7710823 | Msa0393630:intron | 30.0% |
| ATATCATACCAAAAGTTGCA+TGG | - | chr3_2:7710815-7710834 | None:intergenic | 30.0% | |
| !!! | TCAACTTTTGGTCTTAGTTT+TGG | - | chr3_2:7711064-7711083 | None:intergenic | 30.0% |
| AAAACTAAGACCAAAAGTTG+AGG | + | chr3_2:7711063-7711082 | Msa0393630:intron | 30.0% | |
| ! | AACATTAAGACCTCAACTTT+TGG | - | chr3_2:7711076-7711095 | None:intergenic | 30.0% |
| TCTAGTGATATCGTAAAAAG+TGG | - | chr3_2:7711144-7711163 | None:intergenic | 30.0% | |
| ATGTGTATTCTTTGACTAAG+AGG | - | chr3_2:7711435-7711454 | None:intergenic | 30.0% | |
| TACTATAAAGTCAGATGCAA+AGG | + | chr3_2:7711484-7711503 | Msa0393630:intron | 30.0% | |
| CAAAAATACAAAGAGAGCAA+AGG | + | chr3_2:7711557-7711576 | Msa0393630:CDS | 30.0% | |
| AAAATACAAAGAGAGCAAAG+GGG | + | chr3_2:7711559-7711578 | Msa0393630:CDS | 30.0% | |
| ! | TGTAAGATTTTCTCCAACTA+TGG | + | chr3_2:7711589-7711608 | Msa0393630:CDS | 30.0% |
| CACAATCTTCAATCTTTGAA+AGG | + | chr3_2:7711828-7711847 | Msa0393630:CDS | 30.0% | |
| AATGATGATAATACACGCAT+TGG | - | chr3_2:7710408-7710427 | None:intergenic | 30.0% | |
| GATGTGTAGTAAAACTAGAT+GGG | - | chr3_2:7710555-7710574 | None:intergenic | 30.0% | |
| TAGATATGAGAAAGTTGTGT+TGG | - | chr3_2:7710577-7710596 | None:intergenic | 30.0% | |
| TGCTTGATTTATGTTTGTGT+TGG | + | chr3_2:7710600-7710619 | Msa0393630:intron | 30.0% | |
| !! | GTAAAATTGATGATGTTTGG+TGG | - | chr3_2:7710633-7710652 | None:intergenic | 30.0% |
| TAAATCATCAAACCCTAGAT+GGG | - | chr3_2:7710740-7710759 | None:intergenic | 30.0% | |
| ! | GTTGCATGGCTTAAATATTT+TGG | - | chr3_2:7710801-7710820 | None:intergenic | 30.0% |
| ! | TATTTAAGCCATGCAACTTT+TGG | + | chr3_2:7710804-7710823 | Msa0393630:intron | 30.0% |
| ATATCATACCAAAAGTTGCA+TGG | - | chr3_2:7710815-7710834 | None:intergenic | 30.0% | |
| !!! | TCAACTTTTGGTCTTAGTTT+TGG | - | chr3_2:7711064-7711083 | None:intergenic | 30.0% |
| AAAACTAAGACCAAAAGTTG+AGG | + | chr3_2:7711063-7711082 | Msa0393630:intron | 30.0% | |
| ! | AACATTAAGACCTCAACTTT+TGG | - | chr3_2:7711076-7711095 | None:intergenic | 30.0% |
| TCTAGTGATATCGTAAAAAG+TGG | - | chr3_2:7711144-7711163 | None:intergenic | 30.0% | |
| ATGTGTATTCTTTGACTAAG+AGG | - | chr3_2:7711435-7711454 | None:intergenic | 30.0% | |
| TACTATAAAGTCAGATGCAA+AGG | + | chr3_2:7711484-7711503 | Msa0393630:intron | 30.0% | |
| CAAAAATACAAAGAGAGCAA+AGG | + | chr3_2:7711557-7711576 | Msa0393630:CDS | 30.0% | |
| AAAATACAAAGAGAGCAAAG+GGG | + | chr3_2:7711559-7711578 | Msa0393630:CDS | 30.0% | |
| ! | TGTAAGATTTTCTCCAACTA+TGG | + | chr3_2:7711589-7711608 | Msa0393630:CDS | 30.0% |
| CACAATCTTCAATCTTTGAA+AGG | + | chr3_2:7711828-7711847 | Msa0393630:CDS | 30.0% | |
| TTTCTCATCCCCATTGAATA+TGG | + | chr3_2:7710296-7710315 | Msa0393630:CDS | 35.0% | |
| TTCTCATCCCCATTGAATAT+GGG | + | chr3_2:7710297-7710316 | Msa0393630:CDS | 35.0% | |
| TTACCCTACCCATATTCAAT+GGG | - | chr3_2:7710308-7710327 | None:intergenic | 35.0% | |
| AGGGTAACAGATAAGTATGT+AGG | + | chr3_2:7710321-7710340 | Msa0393630:CDS | 35.0% | |
| ACAGATAAGTATGTAGGAGT+AGG | + | chr3_2:7710327-7710346 | Msa0393630:CDS | 35.0% | |
| CAGATAAGTATGTAGGAGTA+GGG | + | chr3_2:7710328-7710347 | Msa0393630:CDS | 35.0% | |
| AGATAAGTATGTAGGAGTAG+GGG | + | chr3_2:7710329-7710348 | Msa0393630:CDS | 35.0% | |
| ! | ATGATAATACACGCATTGGT+AGG | - | chr3_2:7710404-7710423 | None:intergenic | 35.0% |
| GGATGTGTAGTAAAACTAGA+TGG | - | chr3_2:7710556-7710575 | None:intergenic | 35.0% | |
| GTAAATCATCAAACCCTAGA+TGG | - | chr3_2:7710741-7710760 | None:intergenic | 35.0% | |
| !! | GGTGAAAATTTCTAGCTTAG+AGG | - | chr3_2:7710853-7710872 | None:intergenic | 35.0% |
| ATACACATGACCTAATCCAA+CGG | + | chr3_2:7711447-7711466 | Msa0393630:intron | 35.0% | |
| TATAACTGAATACAGTCCGT+TGG | - | chr3_2:7711466-7711485 | None:intergenic | 35.0% | |
| ! | GTGGTGAAGTTGTAAGATTT+TGG | - | chr3_2:7711532-7711551 | None:intergenic | 35.0% |
| AAATACAAAGAGAGCAAAGG+GGG | + | chr3_2:7711560-7711579 | Msa0393630:CDS | 35.0% | |
| !! | TGTCACAAGTCATTTTCCAA+TGG | + | chr3_2:7711638-7711657 | Msa0393630:CDS | 35.0% |
| !! | GTCACAAGTCATTTTCCAAT+GGG | + | chr3_2:7711639-7711658 | Msa0393630:CDS | 35.0% |
| ! | ATTTTCCAATGGGAAAGCTT+TGG | + | chr3_2:7711649-7711668 | Msa0393630:CDS | 35.0% |
| ! | TTTTCCAATGGGAAAGCTTT+GGG | + | chr3_2:7711650-7711669 | Msa0393630:CDS | 35.0% |
| GATTCGTAATTTGGCATAGT+GGG | - | chr3_2:7711690-7711709 | None:intergenic | 35.0% | |
| !! | TTTTGGAGGGATTCGTAATT+TGG | - | chr3_2:7711699-7711718 | None:intergenic | 35.0% |
| CAAGTATTCAGATACTTGGT+TGG | - | chr3_2:7711732-7711751 | None:intergenic | 35.0% | |
| CAACCAAGTATCTGAATACT+TGG | + | chr3_2:7711730-7711749 | Msa0393630:CDS | 35.0% | |
| CAACCAAGTATTCAGATACT+TGG | - | chr3_2:7711736-7711755 | None:intergenic | 35.0% | |
| ATCTGAATACTTGGTTGAGT+TGG | + | chr3_2:7711739-7711758 | Msa0393630:CDS | 35.0% | |
| TTTCTCATCCCCATTGAATA+TGG | + | chr3_2:7710296-7710315 | Msa0393630:CDS | 35.0% | |
| TTCTCATCCCCATTGAATAT+GGG | + | chr3_2:7710297-7710316 | Msa0393630:CDS | 35.0% | |
| TTACCCTACCCATATTCAAT+GGG | - | chr3_2:7710308-7710327 | None:intergenic | 35.0% | |
| AGGGTAACAGATAAGTATGT+AGG | + | chr3_2:7710321-7710340 | Msa0393630:CDS | 35.0% | |
| ACAGATAAGTATGTAGGAGT+AGG | + | chr3_2:7710327-7710346 | Msa0393630:CDS | 35.0% | |
| CAGATAAGTATGTAGGAGTA+GGG | + | chr3_2:7710328-7710347 | Msa0393630:CDS | 35.0% | |
| AGATAAGTATGTAGGAGTAG+GGG | + | chr3_2:7710329-7710348 | Msa0393630:CDS | 35.0% | |
| ! | ATGATAATACACGCATTGGT+AGG | - | chr3_2:7710404-7710423 | None:intergenic | 35.0% |
| GGATGTGTAGTAAAACTAGA+TGG | - | chr3_2:7710556-7710575 | None:intergenic | 35.0% | |
| GTAAATCATCAAACCCTAGA+TGG | - | chr3_2:7710741-7710760 | None:intergenic | 35.0% | |
| !! | GGTGAAAATTTCTAGCTTAG+AGG | - | chr3_2:7710853-7710872 | None:intergenic | 35.0% |
| ATACACATGACCTAATCCAA+CGG | + | chr3_2:7711447-7711466 | Msa0393630:intron | 35.0% | |
| TATAACTGAATACAGTCCGT+TGG | - | chr3_2:7711466-7711485 | None:intergenic | 35.0% | |
| ! | GTGGTGAAGTTGTAAGATTT+TGG | - | chr3_2:7711532-7711551 | None:intergenic | 35.0% |
| AAATACAAAGAGAGCAAAGG+GGG | + | chr3_2:7711560-7711579 | Msa0393630:CDS | 35.0% | |
| !! | TGTCACAAGTCATTTTCCAA+TGG | + | chr3_2:7711638-7711657 | Msa0393630:CDS | 35.0% |
| !! | GTCACAAGTCATTTTCCAAT+GGG | + | chr3_2:7711639-7711658 | Msa0393630:CDS | 35.0% |
| ! | ATTTTCCAATGGGAAAGCTT+TGG | + | chr3_2:7711649-7711668 | Msa0393630:CDS | 35.0% |
| ! | TTTTCCAATGGGAAAGCTTT+GGG | + | chr3_2:7711650-7711669 | Msa0393630:CDS | 35.0% |
| GATTCGTAATTTGGCATAGT+GGG | - | chr3_2:7711690-7711709 | None:intergenic | 35.0% | |
| !! | TTTTGGAGGGATTCGTAATT+TGG | - | chr3_2:7711699-7711718 | None:intergenic | 35.0% |
| CAAGTATTCAGATACTTGGT+TGG | - | chr3_2:7711732-7711751 | None:intergenic | 35.0% | |
| CAACCAAGTATCTGAATACT+TGG | + | chr3_2:7711730-7711749 | Msa0393630:CDS | 35.0% | |
| CAACCAAGTATTCAGATACT+TGG | - | chr3_2:7711736-7711755 | None:intergenic | 35.0% | |
| ATCTGAATACTTGGTTGAGT+TGG | + | chr3_2:7711739-7711758 | Msa0393630:CDS | 35.0% | |
| ATCCCCATTGAATATGGGTA+GGG | + | chr3_2:7710302-7710321 | Msa0393630:CDS | 40.0% | |
| TACCCTACCCATATTCAATG+GGG | - | chr3_2:7710307-7710326 | None:intergenic | 40.0% | |
| GTTACCCTACCCATATTCAA+TGG | - | chr3_2:7710309-7710328 | None:intergenic | 40.0% | |
| ! | CTTGGTGACTGAAGATTACT+TGG | - | chr3_2:7710477-7710496 | None:intergenic | 40.0% |
| CACATCACATAGTACATACG+AGG | + | chr3_2:7710695-7710714 | Msa0393630:intron | 40.0% | |
| ! | TCTAGCTTAGAGGTGAAAGT+TGG | - | chr3_2:7710843-7710862 | None:intergenic | 40.0% |
| AGAGAGAAGAATTACTCGTG+AGG | - | chr3_2:7710963-7710982 | None:intergenic | 40.0% | |
| GCTGAAGATGTAATCCTACT+TGG | - | chr3_2:7710991-7711010 | None:intergenic | 40.0% | |
| ! | TACATTTTTGTGCTCGCTCT+TGG | + | chr3_2:7711019-7711038 | Msa0393630:intron | 40.0% |
| TGAATACAGTCCGTTGGATT+AGG | - | chr3_2:7711460-7711479 | None:intergenic | 40.0% | |
| TCTCCAACTATGGAGAACAA+TGG | + | chr3_2:7711599-7711618 | Msa0393630:CDS | 40.0% | |
| CTACCATTGTTCTCCATAGT+TGG | - | chr3_2:7711605-7711624 | None:intergenic | 40.0% | |
| GGATTCGTAATTTGGCATAG+TGG | - | chr3_2:7711691-7711710 | None:intergenic | 40.0% | |
| !! | AGATACTTGGTTGGTGATTG+GGG | - | chr3_2:7711723-7711742 | None:intergenic | 40.0% |
| !! | CAGATACTTGGTTGGTGATT+GGG | - | chr3_2:7711724-7711743 | None:intergenic | 40.0% |
| !! | TCAGATACTTGGTTGGTGAT+TGG | - | chr3_2:7711725-7711744 | None:intergenic | 40.0% |
| ! | GATAGAGTGAGTTGGATGTT+TGG | - | chr3_2:7711765-7711784 | None:intergenic | 40.0% |
| GATGTAGAGATAGAGTGAGT+TGG | - | chr3_2:7711773-7711792 | None:intergenic | 40.0% | |
| AATTGTGCCCTGTCAAACTT+TGG | + | chr3_2:7711858-7711877 | Msa0393630:CDS | 40.0% | |
| ATCCCCATTGAATATGGGTA+GGG | + | chr3_2:7710302-7710321 | Msa0393630:CDS | 40.0% | |
| TACCCTACCCATATTCAATG+GGG | - | chr3_2:7710307-7710326 | None:intergenic | 40.0% | |
| GTTACCCTACCCATATTCAA+TGG | - | chr3_2:7710309-7710328 | None:intergenic | 40.0% | |
| ! | CTTGGTGACTGAAGATTACT+TGG | - | chr3_2:7710477-7710496 | None:intergenic | 40.0% |
| CACATCACATAGTACATACG+AGG | + | chr3_2:7710695-7710714 | Msa0393630:intron | 40.0% | |
| ! | TCTAGCTTAGAGGTGAAAGT+TGG | - | chr3_2:7710843-7710862 | None:intergenic | 40.0% |
| AGAGAGAAGAATTACTCGTG+AGG | - | chr3_2:7710963-7710982 | None:intergenic | 40.0% | |
| GCTGAAGATGTAATCCTACT+TGG | - | chr3_2:7710991-7711010 | None:intergenic | 40.0% | |
| ! | TACATTTTTGTGCTCGCTCT+TGG | + | chr3_2:7711019-7711038 | Msa0393630:intron | 40.0% |
| TGAATACAGTCCGTTGGATT+AGG | - | chr3_2:7711460-7711479 | None:intergenic | 40.0% | |
| TCTCCAACTATGGAGAACAA+TGG | + | chr3_2:7711599-7711618 | Msa0393630:CDS | 40.0% | |
| CTACCATTGTTCTCCATAGT+TGG | - | chr3_2:7711605-7711624 | None:intergenic | 40.0% | |
| GGATTCGTAATTTGGCATAG+TGG | - | chr3_2:7711691-7711710 | None:intergenic | 40.0% | |
| !! | AGATACTTGGTTGGTGATTG+GGG | - | chr3_2:7711723-7711742 | None:intergenic | 40.0% |
| !! | CAGATACTTGGTTGGTGATT+GGG | - | chr3_2:7711724-7711743 | None:intergenic | 40.0% |
| !! | TCAGATACTTGGTTGGTGAT+TGG | - | chr3_2:7711725-7711744 | None:intergenic | 40.0% |
| ! | GATAGAGTGAGTTGGATGTT+TGG | - | chr3_2:7711765-7711784 | None:intergenic | 40.0% |
| GATGTAGAGATAGAGTGAGT+TGG | - | chr3_2:7711773-7711792 | None:intergenic | 40.0% | |
| AATTGTGCCCTGTCAAACTT+TGG | + | chr3_2:7711858-7711877 | Msa0393630:CDS | 40.0% | |
| CATCCCCATTGAATATGGGT+AGG | + | chr3_2:7710301-7710320 | Msa0393630:CDS | 45.0% | |
| ! | AATACACGCATTGGTAGGCA+TGG | - | chr3_2:7710399-7710418 | None:intergenic | 45.0% |
| TCCATTTCAACCACCCATCT+AGG | + | chr3_2:7710724-7710743 | Msa0393630:intron | 45.0% | |
| CCATTTCAACCACCCATCTA+GGG | + | chr3_2:7710725-7710744 | Msa0393630:intron | 45.0% | |
| ATCATCAAACCCTAGATGGG+TGG | - | chr3_2:7710737-7710756 | None:intergenic | 45.0% | |
| CTTCTCTCTACTCTCCAAGT+AGG | + | chr3_2:7710974-7710993 | Msa0393630:intron | 45.0% | |
| !! | GATACTTGGTTGGTGATTGG+GGG | - | chr3_2:7711722-7711741 | None:intergenic | 45.0% |
| CATCCCCATTGAATATGGGT+AGG | + | chr3_2:7710301-7710320 | Msa0393630:CDS | 45.0% | |
| ! | AATACACGCATTGGTAGGCA+TGG | - | chr3_2:7710399-7710418 | None:intergenic | 45.0% |
| TCCATTTCAACCACCCATCT+AGG | + | chr3_2:7710724-7710743 | Msa0393630:intron | 45.0% | |
| CCATTTCAACCACCCATCTA+GGG | + | chr3_2:7710725-7710744 | Msa0393630:intron | 45.0% | |
| ATCATCAAACCCTAGATGGG+TGG | - | chr3_2:7710737-7710756 | None:intergenic | 45.0% | |
| CTTCTCTCTACTCTCCAAGT+AGG | + | chr3_2:7710974-7710993 | Msa0393630:intron | 45.0% | |
| !! | GATACTTGGTTGGTGATTGG+GGG | - | chr3_2:7711722-7711741 | None:intergenic | 45.0% |
| !!! | AAATATTTTTTCATAATAAT+AGG | - | chr3_2:7711114-7711133 | None:intergenic | 5.0% |
| !! | TATTATTATGAAAAAATATT+TGG | + | chr3_2:7711113-7711132 | Msa0393630:intron | 5.0% |
| !! | ATTATTATGAAAAAATATTT+GGG | + | chr3_2:7711114-7711133 | Msa0393630:intron | 5.0% |
| !!! | AAATATTTTTTCATAATAAT+AGG | - | chr3_2:7711114-7711133 | None:intergenic | 5.0% |
| !! | TATTATTATGAAAAAATATT+TGG | + | chr3_2:7711113-7711132 | Msa0393630:intron | 5.0% |
| !! | ATTATTATGAAAAAATATTT+GGG | + | chr3_2:7711114-7711133 | Msa0393630:intron | 5.0% |
| ! | CTGGAGTACCTGAACCCATT+GGG | + | chr3_2:7710255-7710274 | Msa0393630:CDS | 50.0% |
| ! | TGGAGTACCTGAACCCATTG+GGG | + | chr3_2:7710256-7710275 | Msa0393630:CDS | 50.0% |
| GTATGTAGGAGTAGGGGATG+AGG | + | chr3_2:7710335-7710354 | Msa0393630:CDS | 50.0% | |
| TAGGAGTAGGGGATGAGGAT+CGG | + | chr3_2:7710340-7710359 | Msa0393630:CDS | 50.0% | |
| CATTGGTAGGCATGGCAATG+GGG | - | chr3_2:7710391-7710410 | None:intergenic | 50.0% | |
| ! | GCATTGGTAGGCATGGCAAT+GGG | - | chr3_2:7710392-7710411 | None:intergenic | 50.0% |
| CCCTAGATGGGTGGTTGAAA+TGG | - | chr3_2:7710728-7710747 | None:intergenic | 50.0% | |
| TACAAAGAGAGCAAAGGGGG+TGG | + | chr3_2:7711563-7711582 | Msa0393630:CDS | 50.0% | |
| !! | TCCAATGGGAAAGCTTTGGG+AGG | + | chr3_2:7711653-7711672 | Msa0393630:CDS | 50.0% |
| TCCTCCCAAAGCTTTCCCAT+TGG | - | chr3_2:7711657-7711676 | None:intergenic | 50.0% | |
| !!! | TGGTGATTGGGGGTTTTGGA+GGG | - | chr3_2:7711712-7711731 | None:intergenic | 50.0% |
| !! | TTGGTGATTGGGGGTTTTGG+AGG | - | chr3_2:7711713-7711732 | None:intergenic | 50.0% |
| !!! | TGGTTGGTGATTGGGGGTTT+TGG | - | chr3_2:7711716-7711735 | None:intergenic | 50.0% |
| ! | CTGGAGTACCTGAACCCATT+GGG | + | chr3_2:7710255-7710274 | Msa0393630:CDS | 50.0% |
| ! | TGGAGTACCTGAACCCATTG+GGG | + | chr3_2:7710256-7710275 | Msa0393630:CDS | 50.0% |
| GTATGTAGGAGTAGGGGATG+AGG | + | chr3_2:7710335-7710354 | Msa0393630:CDS | 50.0% | |
| TAGGAGTAGGGGATGAGGAT+CGG | + | chr3_2:7710340-7710359 | Msa0393630:CDS | 50.0% | |
| CATTGGTAGGCATGGCAATG+GGG | - | chr3_2:7710391-7710410 | None:intergenic | 50.0% | |
| ! | GCATTGGTAGGCATGGCAAT+GGG | - | chr3_2:7710392-7710411 | None:intergenic | 50.0% |
| CCCTAGATGGGTGGTTGAAA+TGG | - | chr3_2:7710728-7710747 | None:intergenic | 50.0% | |
| TACAAAGAGAGCAAAGGGGG+TGG | + | chr3_2:7711563-7711582 | Msa0393630:CDS | 50.0% | |
| !! | TCCAATGGGAAAGCTTTGGG+AGG | + | chr3_2:7711653-7711672 | Msa0393630:CDS | 50.0% |
| TCCTCCCAAAGCTTTCCCAT+TGG | - | chr3_2:7711657-7711676 | None:intergenic | 50.0% | |
| !!! | TGGTGATTGGGGGTTTTGGA+GGG | - | chr3_2:7711712-7711731 | None:intergenic | 50.0% |
| !! | TTGGTGATTGGGGGTTTTGG+AGG | - | chr3_2:7711713-7711732 | None:intergenic | 50.0% |
| !!! | TGGTTGGTGATTGGGGGTTT+TGG | - | chr3_2:7711716-7711735 | None:intergenic | 50.0% |
| ! | GCTGGAGTACCTGAACCCAT+TGG | + | chr3_2:7710254-7710273 | Msa0393630:CDS | 55.0% |
| GTACCTGAACCCATTGGGGA+CGG | + | chr3_2:7710260-7710279 | Msa0393630:CDS | 55.0% | |
| TACCTGAACCCATTGGGGAC+GGG | + | chr3_2:7710261-7710280 | Msa0393630:CDS | 55.0% | |
| ATCTCATCCCCGTCCCCAAT+GGG | - | chr3_2:7710272-7710291 | None:intergenic | 55.0% | |
| AATCTCATCCCCGTCCCCAA+TGG | - | chr3_2:7710273-7710292 | None:intergenic | 55.0% | |
| AGGAGTAGGGGATGAGGATC+GGG | + | chr3_2:7710341-7710360 | Msa0393630:CDS | 55.0% | |
| ! | CGCATTGGTAGGCATGGCAA+TGG | - | chr3_2:7710393-7710412 | None:intergenic | 55.0% |
| ! | GCTGGAGTACCTGAACCCAT+TGG | + | chr3_2:7710254-7710273 | Msa0393630:CDS | 55.0% |
| GTACCTGAACCCATTGGGGA+CGG | + | chr3_2:7710260-7710279 | Msa0393630:CDS | 55.0% | |
| TACCTGAACCCATTGGGGAC+GGG | + | chr3_2:7710261-7710280 | Msa0393630:CDS | 55.0% | |
| ATCTCATCCCCGTCCCCAAT+GGG | - | chr3_2:7710272-7710291 | None:intergenic | 55.0% | |
| AATCTCATCCCCGTCCCCAA+TGG | - | chr3_2:7710273-7710292 | None:intergenic | 55.0% | |
| AGGAGTAGGGGATGAGGATC+GGG | + | chr3_2:7710341-7710360 | Msa0393630:CDS | 55.0% | |
| ! | CGCATTGGTAGGCATGGCAA+TGG | - | chr3_2:7710393-7710412 | None:intergenic | 55.0% |
| ACCTGAACCCATTGGGGACG+GGG | + | chr3_2:7710262-7710281 | Msa0393630:CDS | 60.0% | |
| GTAGGGGATGAGGATCGGGA+AGG | + | chr3_2:7710345-7710364 | Msa0393630:CDS | 60.0% | |
| TGGTAGGCATGGCAATGGGG+CGG | - | chr3_2:7710388-7710407 | None:intergenic | 60.0% | |
| ACCTGAACCCATTGGGGACG+GGG | + | chr3_2:7710262-7710281 | Msa0393630:CDS | 60.0% | |
| GTAGGGGATGAGGATCGGGA+AGG | + | chr3_2:7710345-7710364 | Msa0393630:CDS | 60.0% | |
| TGGTAGGCATGGCAATGGGG+CGG | - | chr3_2:7710388-7710407 | None:intergenic | 60.0% | |
| ! | TCCCCGTCCCCAATGGGTTC+AGG | - | chr3_2:7710266-7710285 | None:intergenic | 65.0% |
| GTAGGCATGGCAATGGGGCG+GGG | - | chr3_2:7710386-7710405 | None:intergenic | 65.0% | |
| GGTAGGCATGGCAATGGGGC+GGG | - | chr3_2:7710387-7710406 | None:intergenic | 65.0% | |
| ! | TCCCCGTCCCCAATGGGTTC+AGG | - | chr3_2:7710266-7710285 | None:intergenic | 65.0% |
| GTAGGCATGGCAATGGGGCG+GGG | - | chr3_2:7710386-7710405 | None:intergenic | 65.0% | |
| GGTAGGCATGGCAATGGGGC+GGG | - | chr3_2:7710387-7710406 | None:intergenic | 65.0% | |
| CATGGCAATGGGGCGGGGTC+GGG | - | chr3_2:7710381-7710400 | None:intergenic | 70.0% | |
| GCATGGCAATGGGGCGGGGT+CGG | - | chr3_2:7710382-7710401 | None:intergenic | 70.0% | |
| CATGGCAATGGGGCGGGGTC+GGG | - | chr3_2:7710381-7710400 | None:intergenic | 70.0% | |
| GCATGGCAATGGGGCGGGGT+CGG | - | chr3_2:7710382-7710401 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 7710249 | 7711883 | 7710249 | ID=Msa0393630;Name=Msa0393630 |
| chr3_2 | mRNA | 7710249 | 7711883 | 7710249 | ID=Msa0393630-mRNA-1;Parent=Msa0393630;Name=Msa0393630-mRNA-1;_AED=0.59;_eAED=0.59;_QI=0|0|0|0.5|1|1|2|0|189 |
| chr3_2 | exon | 7710249 | 7710461 | 7710249 | ID=Msa0393630-mRNA-1:exon:2009;Parent=Msa0393630-mRNA-1 |
| chr3_2 | exon | 7711527 | 7711883 | 7711527 | ID=Msa0393630-mRNA-1:exon:2010;Parent=Msa0393630-mRNA-1 |
| chr3_2 | CDS | 7710249 | 7710461 | 7710249 | ID=Msa0393630-mRNA-1:cds;Parent=Msa0393630-mRNA-1 |
| chr3_2 | CDS | 7711527 | 7711883 | 7711527 | ID=Msa0393630-mRNA-1:cds;Parent=Msa0393630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
