AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0394080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0394080 MtrunA17_Chr3g0079691 98.755 241 1 1 33 271 464 704 5.90e-174 496
Msa0394080 MtrunA17_Chr3g0079691 47.872 94 41 3 32 123 251 338 9.74e-16 77.0
Msa0394080 MtrunA17_Chr5g0445311 84.946 93 14 0 38 130 338 430 2.30e-51 176
Msa0394080 MtrunA17_Chr5g0445311 48.148 81 39 2 64 144 200 277 9.09e-15 73.9
Msa0394080 MtrunA17_Chr3g0101131 78.095 105 22 1 39 143 390 493 8.29e-50 172
Msa0394080 MtrunA17_Chr3g0101131 58.333 60 24 1 64 123 243 301 1.64e-15 76.3
Msa0394080 MtrunA17_Chr7g0243891 77.895 95 21 0 40 134 350 444 2.90e-49 170
Msa0394080 MtrunA17_Chr7g0243891 48.276 87 38 3 64 146 216 299 2.12e-17 81.6
Msa0394080 MtrunA17_Chr4g0004911 78.261 92 20 0 35 126 307 398 3.89e-49 169
Msa0394080 MtrunA17_Chr4g0004911 48.864 88 36 2 36 123 165 243 3.43e-18 84.0
Msa0394080 MtrunA17_Chr5g0432161 86.047 86 12 0 43 128 400 485 6.78e-49 170
Msa0394080 MtrunA17_Chr5g0432161 58.333 60 24 1 64 123 244 302 2.01e-15 75.9
Msa0394080 MtrunA17_Chr7g0249311 75.728 103 24 1 33 134 360 462 6.85e-49 171
Msa0394080 MtrunA17_Chr7g0249311 51.282 78 31 2 64 135 179 255 4.41e-16 77.8
Msa0394080 MtrunA17_Chr5g0418191 77.083 96 21 1 45 140 301 395 7.41e-48 164
Msa0394080 MtrunA17_Chr5g0418191 47.525 101 42 5 64 156 151 248 6.43e-18 82.8
Msa0394080 MtrunA17_Chr7g0249301 60.630 127 44 3 5 126 229 354 1.30e-47 162
Msa0394080 MtrunA17_Chr7g0249301 46.078 102 43 5 63 155 61 159 1.48e-16 78.6
Msa0394080 MtrunA17_Chr3g0106491 85.714 84 12 0 45 128 346 429 1.44e-47 165
Msa0394080 MtrunA17_Chr3g0106491 54.545 77 26 3 55 125 185 258 2.79e-16 78.2
Msa0394080 MtrunA17_Chr7g0218081 65.789 114 32 1 22 135 375 481 1.65e-47 165
Msa0394080 MtrunA17_Chr7g0218081 41.964 112 44 3 44 135 193 303 1.03e-16 79.7
Msa0394080 MtrunA17_Chr4g0042831 60.331 121 40 1 20 140 242 354 5.12e-45 155
Msa0394080 MtrunA17_Chr4g0042831 53.425 73 32 1 64 136 145 215 3.81e-15 74.7
Msa0394080 MtrunA17_Chr1g0188941 50.000 110 55 0 15 124 2 111 5.59e-37 127
Msa0394080 MtrunA17_Chr5g0447701 50.893 112 55 0 15 126 203 314 6.35e-33 124
Msa0394080 MtrunA17_Chr5g0447701 50.000 64 31 1 62 125 90 152 1.15e-12 67.4
Msa0394080 MtrunA17_Chr8g0335811 60.920 87 33 1 45 130 135 221 6.59e-32 117
Msa0394080 MtrunA17_Chr7g0263531 58.824 85 35 0 39 123 336 420 1.78e-31 120
Msa0394080 MtrunA17_Chr7g0263531 59.322 59 23 1 65 123 190 247 1.59e-14 72.8
Msa0394080 MtrunA17_Chr2g0294231 65.385 78 27 0 48 125 187 264 4.77e-30 116
Msa0394080 MtrunA17_Chr7g0270191 60.465 86 34 0 48 133 129 214 5.68e-30 114
Msa0394080 MtrunA17_Chr4g0051881 64.474 76 27 0 50 125 164 239 1.94e-29 113
Msa0394080 MtrunA17_Chr3g0129361 52.747 91 43 0 47 137 127 217 3.13e-29 110
Msa0394080 MtrunA17_Chr5g0418781 64.474 76 27 0 45 120 105 180 8.77e-29 110
Msa0394080 MtrunA17_Chr1g0194481 59.756 82 33 0 48 129 142 223 1.93e-28 110
Msa0394080 MtrunA17_Chr8g0383351 60.000 75 29 1 47 120 142 216 1.89e-27 105
Msa0394080 MtrunA17_Chr5g0443131 60.526 76 30 0 50 125 143 218 2.74e-27 107
Msa0394080 MtrunA17_Chr4g0074001 58.228 79 33 0 48 126 343 421 4.32e-27 109
Msa0394080 MtrunA17_Chr8g0383251 50.000 88 44 0 51 138 95 182 5.08e-27 103
Msa0394080 MtrunA17_Chr1g0150801 56.627 83 34 1 40 120 76 158 7.26e-27 102
Msa0394080 MtrunA17_Chr7g0224801 64.706 68 24 0 55 122 84 151 3.20e-26 101
Msa0394080 MtrunA17_Chr8g0386241 47.619 105 53 1 24 128 65 167 3.64e-26 101
Msa0394080 MtrunA17_Chr4g0075201 51.685 89 42 1 38 125 241 329 9.12e-25 102
Msa0394080 MtrunA17_Chr2g0288871 45.918 98 52 1 27 123 268 365 1.17e-24 102
Msa0394080 MtrunA17_Chr3g0129321 54.667 75 34 0 50 124 104 178 1.28e-24 97.8
Msa0394080 MtrunA17_Chr7g0270831 50.000 92 44 2 47 136 199 290 2.12e-24 101
Msa0394080 MtrunA17_Chr4g0068541 57.143 77 33 0 48 124 192 268 2.97e-24 100
Msa0394080 MtrunA17_Chr7g0248721 57.895 76 31 1 45 120 122 196 6.93e-24 96.3
Msa0394080 MtrunA17_Chr2g0322391 53.571 84 38 1 43 125 328 411 9.76e-24 100
Msa0394080 MtrunA17_Chr3g0099641 52.564 78 36 1 47 123 234 311 1.40e-23 99.4
Msa0394080 MtrunA17_Chr1g0189391 48.889 90 45 1 51 139 84 173 2.21e-23 97.4
Msa0394080 MtrunA17_Chr4g0051181 55.128 78 34 1 48 124 227 304 4.22e-23 98.2
Msa0394080 MtrunA17_Chr4g0060271 45.545 101 50 2 24 123 219 315 7.09e-23 97.8
Msa0394080 MtrunA17_Chr4g0025061 45.361 97 52 1 30 125 326 422 8.01e-23 97.8
Msa0394080 MtrunA17_Chr2g0302391 41.667 120 64 3 33 150 184 299 9.69e-23 96.7
Msa0394080 MtrunA17_Chr4g0053281 48.864 88 41 2 45 131 250 334 7.67e-22 93.2
Msa0394080 MtrunA17_Chr6g0485431 54.667 75 33 1 50 123 140 214 9.94e-22 93.2
Msa0394080 MtrunA17_Chr5g0447711 40.594 101 60 0 30 130 196 296 1.03e-21 92.4
Msa0394080 MtrunA17_Chr1g0147881 52.439 82 38 1 45 125 243 324 1.75e-21 92.0
Msa0394080 MtrunA17_Chr7g0216891 45.918 98 47 3 25 120 183 276 2.86e-21 93.2
Msa0394080 MtrunA17_Chr7g0238921 63.158 57 21 0 64 120 124 180 1.15e-20 89.4
Msa0394080 MtrunA17_Chr4g0025051 45.000 100 53 2 27 125 299 397 1.48e-20 90.9
Msa0394080 MtrunA17_Chr2g0333851 51.948 77 34 2 51 124 154 230 8.62e-20 87.0
Msa0394080 MtrunA17_Chr5g0401821 51.899 79 37 1 45 122 180 258 8.90e-20 86.3
Msa0394080 MtrunA17_Chr3g0136961 52.055 73 32 2 51 120 123 195 1.16e-19 86.3
Msa0394080 MtrunA17_Chr4g0071521 50.000 78 38 1 44 120 225 302 7.07e-19 84.7
Msa0394080 MtrunA17_Chr1g0150271 46.575 73 38 1 52 123 89 161 8.09e-18 80.5
Msa0394080 MtrunA17_Chr4g0024391 35.714 112 71 1 15 125 180 291 9.08e-18 82.8
Msa0394080 MtrunA17_Chr1g0184691 49.351 77 38 1 45 120 274 350 1.57e-17 81.3
Msa0394080 MtrunA17_Chr4g0001361 53.968 63 28 1 62 123 160 222 2.02e-17 80.5
Msa0394080 MtrunA17_Chr7g0270051 53.030 66 30 1 65 129 54 119 4.44e-17 79.0
Msa0394080 MtrunA17_Chr1g0150281 45.122 82 39 3 45 120 116 197 6.89e-17 78.6
Msa0394080 MtrunA17_Chr8g0379461 44.928 69 37 1 65 132 77 145 2.42e-16 76.3
Msa0394080 MtrunA17_Chr1g0202461 42.353 85 47 2 45 128 243 326 3.87e-16 77.4
Msa0394080 MtrunA17_Chr3g0139021 46.154 78 41 1 45 121 295 372 5.25e-16 77.0
Msa0394080 MtrunA17_Chr1g0188961 65.957 47 16 0 84 130 3 49 5.57e-16 70.9
Msa0394080 MtrunA17_Chr8g0387501 49.254 67 33 1 63 128 128 194 1.28e-15 74.7
Msa0394080 MtrunA17_Chr2g0289181 48.529 68 34 1 59 125 9 76 1.93e-15 73.6
Msa0394080 MtrunA17_Chr8g0348311 50.769 65 31 1 65 128 156 220 3.25e-15 74.3
Msa0394080 MtrunA17_Chr2g0319961 48.438 64 32 1 65 127 81 144 3.41e-15 73.6
Msa0394080 MtrunA17_Chr5g0432071 53.226 62 28 1 64 125 104 164 3.61e-15 72.4
Msa0394080 MtrunA17_Chr7g0228941 46.479 71 37 1 51 120 39 109 4.70e-15 70.1
Msa0394080 MtrunA17_Chr2g0293481 46.575 73 37 2 57 128 261 332 4.73e-15 74.7
Msa0394080 MtrunA17_Chr2g0284321 46.667 75 38 2 65 137 36 110 9.66e-15 71.2
Msa0394080 MtrunA17_Chr7g0248691 49.231 65 32 1 65 128 155 219 1.64e-14 72.4
Msa0394080 MtrunA17_Chr5g0419241 50.909 55 27 0 38 92 51 105 5.19e-14 66.6
Msa0394080 MtrunA17_Chr3g0126391 34.513 113 62 3 63 167 132 240 7.84e-13 67.4
Msa0394080 MtrunA17_Chr1g0188971 54.348 46 21 0 39 84 37 82 1.58e-12 62.0
Msa0394080 MtrunA17_Chr8g0387981 48.276 58 27 1 64 118 132 189 2.71e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0394080 AT5G56270.1 54.251 247 84 9 33 266 455 685 5.33e-64 213
Msa0394080 AT5G56270.1 58.333 60 24 1 64 123 273 331 2.74e-15 75.9
Msa0394080 AT4G26440.1 61.404 171 61 4 33 199 340 509 3.32e-59 197
Msa0394080 AT4G26440.1 55.000 60 26 1 64 123 178 236 5.28e-14 72.0
Msa0394080 AT2G38470.1 78.261 92 20 0 44 135 342 433 9.80e-49 169
Msa0394080 AT2G38470.1 58.065 62 21 2 64 123 184 242 8.73e-15 74.3
Msa0394080 AT4G26640.5 76.289 97 23 0 33 129 174 270 7.00e-48 163
Msa0394080 AT4G26640.5 56.452 62 26 1 62 123 33 93 5.01e-15 74.7
Msa0394080 AT4G26640.6 76.289 97 23 0 33 129 174 270 7.00e-48 163
Msa0394080 AT4G26640.6 56.452 62 26 1 62 123 33 93 5.01e-15 74.7
Msa0394080 AT4G26640.4 76.289 97 23 0 33 129 174 270 7.00e-48 163
Msa0394080 AT4G26640.4 56.452 62 26 1 62 123 33 93 5.01e-15 74.7
Msa0394080 AT4G26640.3 76.289 97 23 0 33 129 174 270 7.00e-48 163
Msa0394080 AT4G26640.3 56.452 62 26 1 62 123 33 93 5.01e-15 74.7
Msa0394080 AT4G26640.1 75.510 98 24 0 33 130 278 375 2.88e-47 164
Msa0394080 AT4G26640.1 56.452 62 26 1 62 123 137 197 3.67e-15 75.5
Msa0394080 AT4G26640.7 75.510 98 24 0 33 130 310 407 3.03e-47 165
Msa0394080 AT4G26640.7 56.452 62 26 1 62 123 169 229 3.09e-15 75.5
Msa0394080 AT4G26640.2 75.510 98 24 0 33 130 350 447 6.19e-47 164
Msa0394080 AT4G26640.2 56.452 62 26 1 62 123 209 269 3.37e-15 75.5
Msa0394080 AT2G03340.1 75.824 91 22 0 40 130 391 481 1.19e-45 160
Msa0394080 AT2G03340.1 48.980 98 47 3 64 159 250 346 3.30e-18 84.3
Msa0394080 AT5G07100.2 72.826 92 25 0 35 126 112 203 1.41e-43 147
Msa0394080 AT5G07100.2 42.857 91 50 1 64 152 24 114 1.67e-16 76.6
Msa0394080 AT5G07100.4 72.826 92 25 0 35 126 112 203 1.41e-43 147
Msa0394080 AT5G07100.4 42.857 91 50 1 64 152 24 114 1.67e-16 76.6
Msa0394080 AT5G07100.5 72.826 92 25 0 35 126 112 203 1.41e-43 147
Msa0394080 AT5G07100.5 42.857 91 50 1 64 152 24 114 1.67e-16 76.6
Msa0394080 AT5G07100.3 72.826 92 25 0 35 126 112 203 1.41e-43 147
Msa0394080 AT5G07100.3 42.857 91 50 1 64 152 24 114 1.67e-16 76.6
Msa0394080 AT5G07100.1 81.250 80 15 0 47 126 217 296 5.69e-43 149
Msa0394080 AT5G07100.1 37.069 116 60 2 50 152 92 207 1.14e-16 78.6
Msa0394080 AT1G13960.2 79.747 79 16 0 45 123 237 315 2.01e-42 149
Msa0394080 AT1G13960.2 63.333 60 21 1 64 123 76 134 1.21e-17 82.0
Msa0394080 AT1G13960.1 79.747 79 16 0 45 123 390 468 5.94e-42 150
Msa0394080 AT1G13960.1 63.333 60 21 1 64 123 229 287 6.00e-18 83.6
Msa0394080 AT3G01080.1 70.526 95 28 0 29 123 271 365 6.25e-42 149
Msa0394080 AT3G01080.1 55.556 63 27 1 64 126 167 228 1.58e-15 76.3
Msa0394080 AT3G01080.2 70.526 95 28 0 29 123 309 403 6.31e-42 149
Msa0394080 AT3G01080.2 55.556 63 27 1 64 126 205 266 1.30e-15 76.6
Msa0394080 AT2G30250.1 66.265 83 28 0 43 125 307 389 5.05e-37 135
Msa0394080 AT2G30250.1 47.561 82 37 2 42 123 149 224 1.94e-13 70.1
Msa0394080 AT2G04880.2 59.574 94 38 0 39 132 258 351 2.18e-34 129
Msa0394080 AT2G04880.2 36.036 111 64 3 62 167 109 217 7.41e-15 74.3
Msa0394080 AT2G04880.1 59.574 94 38 0 39 132 282 375 3.10e-34 129
Msa0394080 AT2G04880.1 50.000 64 31 1 62 125 109 171 8.73e-14 71.2
Msa0394080 AT2G44745.1 62.353 85 31 1 45 129 126 209 6.00e-33 120
Msa0394080 AT1G55600.1 60.227 88 35 0 38 125 281 368 8.53e-32 122
Msa0394080 AT1G69310.4 62.195 82 31 0 39 120 122 203 3.92e-30 114
Msa0394080 AT1G69310.2 62.195 82 31 0 39 120 122 203 3.92e-30 114
Msa0394080 AT1G69310.1 62.195 82 31 0 39 120 122 203 3.92e-30 114
Msa0394080 AT4G39410.1 56.122 98 38 1 45 137 204 301 5.92e-30 114
Msa0394080 AT4G18170.1 64.935 77 27 0 48 124 156 232 2.11e-29 113
Msa0394080 AT1G29860.1 62.821 78 29 0 48 125 120 197 4.98e-29 111
Msa0394080 AT2G47260.1 53.535 99 44 1 48 146 158 254 1.83e-28 111
Msa0394080 AT5G13080.1 60.000 75 30 0 51 125 54 128 1.30e-27 104
Msa0394080 AT5G49520.1 61.842 76 29 0 48 123 205 280 1.93e-27 109
Msa0394080 AT5G46350.1 61.039 77 30 0 50 126 169 245 2.14e-27 108
Msa0394080 AT3G01970.1 60.000 80 32 0 51 130 52 131 3.29e-27 103
Msa0394080 AT4G30935.1 60.526 76 30 0 51 126 318 393 6.14e-27 108
Msa0394080 AT2G37260.3 69.118 68 21 0 53 120 258 325 8.29e-27 107
Msa0394080 AT2G37260.3 48.837 86 35 3 56 133 73 157 1.41e-15 75.9
Msa0394080 AT2G37260.2 69.118 68 21 0 53 120 256 323 8.47e-27 107
Msa0394080 AT2G37260.2 48.837 86 35 3 56 133 71 155 1.46e-15 75.9
Msa0394080 AT2G37260.1 69.118 68 21 0 53 120 338 405 2.08e-26 107
Msa0394080 AT2G37260.1 48.837 86 35 3 56 133 153 237 1.89e-15 76.3
Msa0394080 AT5G64810.1 48.958 96 47 1 28 121 72 167 2.40e-26 102
Msa0394080 AT5G26170.1 61.429 70 27 0 51 120 100 169 2.58e-26 101
Msa0394080 AT5G41570.1 57.895 76 32 0 45 120 79 154 4.04e-26 101
Msa0394080 AT4G04450.2 54.545 88 39 1 39 125 173 260 9.07e-26 105
Msa0394080 AT2G46130.1 55.000 80 36 0 41 120 7 86 1.05e-25 98.2
Msa0394080 AT1G64000.1 56.579 76 33 0 45 120 95 170 3.17e-25 99.4
Msa0394080 AT4G04450.1 54.545 88 39 1 39 125 267 354 3.99e-25 104
Msa0394080 AT1G69310.3 58.537 82 30 1 39 120 122 199 5.39e-25 100
Msa0394080 AT3G62340.1 50.943 106 48 1 40 141 94 199 7.69e-25 100
Msa0394080 AT4G22070.4 53.488 86 39 1 39 123 272 357 1.08e-24 103
Msa0394080 AT4G22070.3 53.488 86 39 1 39 123 272 357 1.08e-24 103
Msa0394080 AT4G22070.2 53.488 86 39 1 39 123 272 357 1.08e-24 103
Msa0394080 AT4G22070.1 53.488 86 39 1 39 123 272 357 1.08e-24 103
Msa0394080 AT1G62300.1 54.878 82 36 1 43 123 291 372 1.40e-23 100
Msa0394080 AT1G68150.1 50.000 90 44 1 48 136 219 308 2.19e-23 98.2
Msa0394080 AT5G15130.2 48.193 83 42 1 47 128 168 250 4.62e-23 98.6
Msa0394080 AT5G15130.1 48.193 83 42 1 47 128 210 292 5.20e-23 98.6
Msa0394080 AT1G18860.1 52.564 78 36 1 47 123 222 299 8.60e-23 97.8
Msa0394080 AT4G01720.1 54.545 77 34 1 48 123 223 299 4.88e-22 95.5
Msa0394080 AT2G46130.2 51.250 80 35 1 41 120 7 82 1.07e-20 84.7
Msa0394080 AT2G23320.1 51.899 79 34 2 45 122 224 299 1.32e-20 89.7
Msa0394080 AT2G21900.1 40.000 100 56 2 30 125 71 170 1.45e-20 87.4
Msa0394080 AT4G24240.1 54.545 77 31 2 45 120 265 338 4.39e-20 89.0
Msa0394080 AT4G31550.1 47.059 102 50 2 35 132 217 318 2.11e-19 86.7
Msa0394080 AT5G28650.1 46.591 88 46 1 45 131 243 330 2.17e-19 86.7
Msa0394080 AT5G43290.1 59.322 59 24 0 62 120 112 170 2.20e-19 85.5
Msa0394080 AT4G31550.2 50.000 92 39 3 45 132 229 317 2.28e-19 86.3
Msa0394080 AT2G24570.1 54.545 77 31 2 45 120 227 300 3.39e-19 85.9
Msa0394080 AT1G80840.1 51.562 64 30 1 62 124 144 207 3.67e-19 85.5
Msa0394080 AT3G04670.1 46.591 88 46 1 45 131 243 330 5.34e-19 85.5
Msa0394080 AT4G23550.1 46.753 77 40 1 53 128 129 205 9.36e-19 84.3
Msa0394080 AT2G30590.1 51.948 77 36 1 45 120 294 370 2.47e-18 84.0
Msa0394080 AT1G69810.2 44.211 95 49 3 47 139 128 220 3.30e-18 83.2
Msa0394080 AT1G69810.1 44.211 95 49 3 47 139 186 278 4.28e-18 83.6
Msa0394080 AT2G25000.2 45.205 73 39 1 63 134 102 174 4.76e-18 81.3
Msa0394080 AT2G25000.4 45.205 73 39 1 63 134 102 174 4.76e-18 81.3
Msa0394080 AT2G25000.3 47.143 70 36 1 63 131 124 193 8.97e-18 80.9
Msa0394080 AT2G25000.1 45.205 73 39 1 63 134 145 217 1.38e-17 80.5
Msa0394080 AT4G31800.2 45.333 75 40 1 52 125 99 173 2.49e-17 79.3
Msa0394080 AT4G31800.1 45.333 75 40 1 52 125 164 238 4.34e-17 79.7
Msa0394080 AT4G12020.11 75.000 48 11 1 38 84 614 661 5.46e-17 81.3
Msa0394080 AT4G12020.11 41.304 92 43 2 63 144 467 557 5.57e-14 72.4
Msa0394080 AT4G12020.5 75.000 48 11 1 38 84 547 594 5.87e-17 81.3
Msa0394080 AT4G12020.5 41.304 92 43 2 63 144 400 490 6.19e-14 72.0
Msa0394080 AT4G12020.7 75.000 48 11 1 38 84 614 661 6.86e-17 80.9
Msa0394080 AT4G12020.7 41.304 92 43 2 63 144 467 557 7.51e-14 72.0
Msa0394080 AT4G12020.1 75.000 48 11 1 38 84 614 661 6.87e-17 80.9
Msa0394080 AT4G12020.1 41.304 92 43 2 63 144 467 557 7.58e-14 72.0
Msa0394080 AT4G12020.9 75.000 48 11 1 38 84 614 661 6.87e-17 80.9
Msa0394080 AT4G12020.9 41.304 92 43 2 63 144 467 557 7.58e-14 72.0
Msa0394080 AT4G12020.3 75.000 48 11 1 38 84 614 661 6.90e-17 80.9
Msa0394080 AT4G12020.3 41.304 92 43 2 63 144 467 557 7.62e-14 72.0
Msa0394080 AT4G12020.6 75.000 48 11 1 38 84 614 661 6.92e-17 80.9
Msa0394080 AT4G12020.6 41.304 92 43 2 63 144 467 557 7.50e-14 72.0
Msa0394080 AT4G12020.8 75.000 48 11 1 38 84 614 661 6.92e-17 80.9
Msa0394080 AT4G12020.8 41.304 92 43 2 63 144 467 557 7.50e-14 72.0
Msa0394080 AT4G12020.10 75.000 48 11 1 38 84 614 661 6.96e-17 80.9
Msa0394080 AT4G12020.10 41.304 92 43 2 63 144 467 557 7.62e-14 72.0
Msa0394080 AT4G12020.4 75.000 48 11 1 38 84 614 661 6.97e-17 80.9
Msa0394080 AT4G12020.4 41.304 92 43 2 63 144 467 557 7.55e-14 72.0
Msa0394080 AT4G12020.2 75.000 48 11 1 38 84 614 661 6.97e-17 80.9
Msa0394080 AT4G12020.2 41.304 92 43 2 63 144 467 557 7.63e-14 72.0
Msa0394080 AT3G01080.3 55.556 63 27 1 64 126 205 266 4.63e-16 77.0
Msa0394080 AT5G52830.1 43.529 85 46 2 45 128 147 230 5.54e-16 77.0
Msa0394080 AT4G01250.1 53.846 65 29 1 65 128 129 193 7.40e-16 76.3
Msa0394080 AT1G30650.1 34.400 125 67 4 5 128 172 282 2.59e-15 75.5
Msa0394080 AT1G29280.1 47.692 65 33 1 65 128 75 139 4.68e-15 73.6
Msa0394080 AT2G34830.1 37.037 108 54 3 22 128 186 280 6.00e-15 74.7
Msa0394080 AT2G34830.2 37.037 108 54 3 22 128 195 289 6.31e-15 74.7
Msa0394080 AT5G45050.2 35.593 118 71 2 16 128 1100 1217 1.51e-14 73.9
Msa0394080 AT5G45050.1 35.593 118 71 2 16 128 1128 1245 1.53e-14 73.9
Msa0394080 AT5G45050.4 35.593 118 71 2 16 128 989 1106 1.78e-14 73.6
Msa0394080 AT3G58710.1 48.387 62 31 1 65 125 72 133 4.07e-14 70.9
Msa0394080 AT3G58710.2 48.387 62 31 1 65 125 71 132 4.31e-14 70.9
Msa0394080 AT2G46400.1 29.787 141 83 4 51 185 91 221 1.76e-11 63.5

Find 82 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTCTTCACATGTTAA+AGG 0.167499 3_2:+8596153 Msa0394080:three_prime_UTR
TCTCTTACATATTCTTTAAA+AGG 0.187225 3_2:+8596034 Msa0394080:three_prime_UTR
CTTGGTTCGTTCAACCTTCC+CGG 0.258909 3_2:+8595708 Msa0394080:CDS
GGTTATCGGTGGCGGAAATA+TGG 0.285913 3_2:+8595280 Msa0394080:CDS
TCCTCGCAAGCAAAGCTTCC+TGG 0.313451 3_2:+8595813 Msa0394080:CDS
ATGTAGTGATCACAGATTTA+AGG 0.340679 3_2:-8595527 None:intergenic
TCCACATTTGGTTCTCCCTT+TGG 0.354303 3_2:-8595906 None:intergenic
AACTTATTCTCTCAGGAAAC+TGG 0.362818 3_2:+8595165 Msa0394080:intron
GGTACCACTCACATTGATTC+AGG 0.376512 3_2:+8594939 Msa0394080:CDS
CATGAATCCCATTTCATTTG+CGG 0.377014 3_2:-8595880 None:intergenic
ATGTTAAGGCCGCCGCGTTC+AGG 0.388731 3_2:-8595936 None:intergenic
GCAACGCGCCGCAAATGAAA+TGG 0.390178 3_2:+8595872 Msa0394080:CDS
GGCGGCCTTAACATGCAAAA+TGG 0.396093 3_2:+8595945 Msa0394080:CDS
GAACCTTGCAATGTCGGGAT+TGG 0.397116 3_2:+8595785 Msa0394080:CDS
TGTTGTTGCTGCATCATGAA+TGG 0.397926 3_2:-8595849 None:intergenic
AACCTTGCAATGTCGGGATT+GGG 0.398700 3_2:+8595786 Msa0394080:CDS
GCAGCTCAAGGACAAGCTTC+TGG 0.405122 3_2:+8595621 Msa0394080:CDS
TTGTGAACTTGAGATGGTTC+AGG 0.405320 3_2:-8595669 None:intergenic
TCAGGATTAGCGTCCACATT+TGG 0.408554 3_2:-8595918 None:intergenic
TACTACAAGTGCACCAATGC+AGG 0.412359 3_2:+8595465 Msa0394080:CDS
GGAAGCTTTGCTTGCGAGGA+AGG 0.428637 3_2:-8595810 None:intergenic
AATGGGTTCATAGGCATTCC+AGG 0.429862 3_2:-8595831 None:intergenic
ATGACCTAGCTGCTGTCTCC+CGG 0.431091 3_2:-8595727 None:intergenic
CCTTACAGTGCACCCTGCAT+TGG 0.431542 3_2:-8595478 None:intergenic
AAGAATGACTACCTTGGGTT+GGG 0.441222 3_2:-8595325 None:intergenic
ATGGTTCAGGTCTATGCATA+TGG 0.448997 3_2:-8595656 None:intergenic
GGTCATCCGCATGGCTTCTT+CGG 0.452741 3_2:+8595744 Msa0394080:CDS
GTTGTTGCTGCATCATGAAT+GGG 0.462753 3_2:-8595848 None:intergenic
ATTATGAATCACATGCCTCT+TGG 0.469433 3_2:+8595990 Msa0394080:CDS
CTGTCGAACCTTGCAATGTC+GGG 0.470366 3_2:+8595780 Msa0394080:CDS
ATATCCTCGATGATGGTTAT+CGG 0.475694 3_2:+8595266 Msa0394080:CDS
CCAATGCAGGGTGCACTGTA+AGG 0.487294 3_2:+8595478 Msa0394080:CDS
CAACGCGCCGCAAATGAAAT+GGG 0.487752 3_2:+8595873 Msa0394080:CDS
TTGGTTCGTTCAACCTTCCC+GGG 0.494017 3_2:+8595709 Msa0394080:CDS
TGACTGCTGGAACGAGCAGC+GGG 0.501885 3_2:-8595576 None:intergenic
TGCATCATGAATGGGTTCAT+AGG 0.504266 3_2:-8595840 None:intergenic
AACGGCATGAGGCCTTCGCT+TGG 0.513928 3_2:+8595690 Msa0394080:CDS
CCTGTCGAACCTTGCAATGT+CGG 0.519344 3_2:+8595779 Msa0394080:CDS
ATCGAGGATATCTACTTCGC+TGG 0.520413 3_2:-8595254 None:intergenic
ATTCGCATTGACGTGACTGC+TGG 0.522171 3_2:-8595589 None:intergenic
TCCAGGAAGCTTTGCTTGCG+AGG 0.522306 3_2:-8595814 None:intergenic
CCGACATTGCAAGGTTCGAC+AGG 0.522335 3_2:-8595779 None:intergenic
TAAGAATGACTACCTTGGGT+TGG 0.541313 3_2:-8595326 None:intergenic
CTAGCTGCTGTCTCCCGGGA+AGG 0.542522 3_2:-8595722 None:intergenic
GAAGCTTTGCTTGCGAGGAA+GGG 0.549966 3_2:-8595809 None:intergenic
TGTAATGATCAGACATACAT+AGG 0.551546 3_2:+8596097 Msa0394080:three_prime_UTR
TCTAGTAGCTCCACTCATCT+CGG 0.552091 3_2:-8595197 None:intergenic
GGCCCAATCCCGACATTGCA+AGG 0.552372 3_2:-8595788 None:intergenic
ATGGGATTCATGTTACCAAA+GGG 0.552557 3_2:+8595891 Msa0394080:CDS
GAAGAAGAGGAAGACGATCA+AGG 0.561217 3_2:+8594996 Msa0394080:CDS
TGACCTAGCTGCTGTCTCCC+GGG 0.564057 3_2:-8595726 None:intergenic
GTAGTCTGAACAACAACTCT+AGG 0.571480 3_2:-8595232 None:intergenic
GAAGTAGATATCCTCGATGA+TGG 0.573669 3_2:+8595259 Msa0394080:CDS
TCGATGATGGTTATCGGTGG+CGG 0.587391 3_2:+8595272 Msa0394080:CDS
GAATCATATGCCGAGATGAG+TGG 0.589323 3_2:+8595187 Msa0394080:CDS
ATGCCGTTGTGAACTTGAGA+TGG 0.595174 3_2:-8595675 None:intergenic
CTCAAGTTCACAACGGCATG+AGG 0.596029 3_2:+8595679 Msa0394080:CDS
CATTGATTCAGGAGATGCAG+TGG 0.597968 3_2:+8594950 Msa0394080:CDS
AACAACTCTAGGCTCGCGAA+TGG 0.599268 3_2:-8595221 None:intergenic
GAAGACGATCAAGGCACTCA+TGG 0.606644 3_2:+8595005 Msa0394080:CDS
TATGGACAGAAAGTTGTCAA+AGG 0.617805 3_2:+8595298 Msa0394080:CDS
AATGCTTCTAACGCAGCTCA+AGG 0.620924 3_2:+8595609 Msa0394080:CDS
GTGACTGCTGGAACGAGCAG+CGG 0.626891 3_2:-8595577 None:intergenic
ACTACAAGTGCACCAATGCA+GGG 0.634462 3_2:+8595466 Msa0394080:CDS
AATGGGATTCATGTTACCAA+AGG 0.635351 3_2:+8595890 Msa0394080:CDS
CTTCCCGGGAGACAGCAGCT+AGG 0.636920 3_2:+8595723 Msa0394080:CDS
CTTGAATGAAAGAAAATCAG+CGG 0.637570 3_2:-8596191 None:intergenic
TCTGTGATCACTACATACGA+GGG 0.638313 3_2:+8595534 Msa0394080:CDS
ATCTGTGATCACTACATACG+AGG 0.641100 3_2:+8595533 Msa0394080:CDS
TCAAAGGAAATCCCAACCCA+AGG 0.645747 3_2:+8595314 Msa0394080:CDS
TCCTCGATGATGGTTATCGG+TGG 0.657777 3_2:+8595269 Msa0394080:CDS
GTGCACTGTAAGGAAGCATG+TGG 0.665453 3_2:+8595488 Msa0394080:CDS
ACCAAAGGGAGAACCAAATG+TGG 0.665868 3_2:+8595905 Msa0394080:CDS
AGGTTGAACGAACCAAGCGA+AGG 0.670429 3_2:-8595702 None:intergenic
ATCTCCTGAATCAATGTGAG+TGG 0.685978 3_2:-8594943 None:intergenic
CAGCAGCTAGGTCATCCGCA+TGG 0.689731 3_2:+8595735 Msa0394080:CDS
TTCATGCCGAAGAAGCCATG+CGG 0.727689 3_2:-8595750 None:intergenic
GACTGCTGGAACGAGCAGCG+GGG 0.738619 3_2:-8595575 None:intergenic
GAACCATCTCAAGTTCACAA+CGG 0.751840 3_2:+8595672 Msa0394080:CDS
GACGCTAATCCTGAACGCGG+CGG 0.752010 3_2:+8595927 Msa0394080:CDS
GCCACCGATAACCATCATCG+AGG 0.756754 3_2:-8595270 None:intergenic
GTGGACGCTAATCCTGAACG+CGG 0.765043 3_2:+8595924 Msa0394080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAATAAAATTTTACATGTG+AGG - chr3_2:8596017-8596036 None:intergenic 20.0%
!! TCTCTTACATATTCTTTAAA+AGG + chr3_2:8596034-8596053 Msa0394080:three_prime_UTR 20.0%
!!! AGAATAAAATTTTACATGTG+AGG - chr3_2:8596017-8596036 None:intergenic 20.0%
!! TCTCTTACATATTCTTTAAA+AGG + chr3_2:8596034-8596053 Msa0394080:three_prime_UTR 20.0%
!! TACATTTTCAAATGAAGAAG+AGG + chr3_2:8594983-8595002 Msa0394080:CDS 25.0%
! TACTTCATACTATTCATTGT+TGG + chr3_2:8595083-8595102 Msa0394080:intron 25.0%
!! GTTGTTCATTTTGAATATCT+TGG - chr3_2:8595148-8595167 None:intergenic 25.0%
! CATTATTCTTCACATGTTAA+AGG + chr3_2:8596153-8596172 Msa0394080:three_prime_UTR 25.0%
!! TACATTTTCAAATGAAGAAG+AGG + chr3_2:8594983-8595002 Msa0394080:CDS 25.0%
! TACTTCATACTATTCATTGT+TGG + chr3_2:8595083-8595102 Msa0394080:intron 25.0%
!! GTTGTTCATTTTGAATATCT+TGG - chr3_2:8595148-8595167 None:intergenic 25.0%
! CATTATTCTTCACATGTTAA+AGG + chr3_2:8596153-8596172 Msa0394080:three_prime_UTR 25.0%
TGTATCATTAGGTTATGATG+CGG + chr3_2:8595031-8595050 Msa0394080:intron 30.0%
ATGAATCAGAGTCTAAAAGA+AGG + chr3_2:8595060-8595079 Msa0394080:intron 30.0%
AATGAACAACTTATTCTCTC+AGG + chr3_2:8595158-8595177 Msa0394080:intron 30.0%
!!! CAGCTATATTTTGACACAAT+GGG - chr3_2:8595418-8595437 None:intergenic 30.0%
!!! TCAGCTATATTTTGACACAA+TGG - chr3_2:8595419-8595438 None:intergenic 30.0%
!! ATAGCTGAATGTTTCTGTTT+TGG + chr3_2:8595431-8595450 Msa0394080:intron 30.0%
!! TAGCTGAATGTTTCTGTTTT+GGG + chr3_2:8595432-8595451 Msa0394080:intron 30.0%
ATGTAGTGATCACAGATTTA+AGG - chr3_2:8595530-8595549 None:intergenic 30.0%
TGTAATGATCAGACATACAT+AGG + chr3_2:8596097-8596116 Msa0394080:three_prime_UTR 30.0%
CTTGAATGAAAGAAAATCAG+CGG - chr3_2:8596194-8596213 None:intergenic 30.0%
TGTATCATTAGGTTATGATG+CGG + chr3_2:8595031-8595050 Msa0394080:intron 30.0%
ATGAATCAGAGTCTAAAAGA+AGG + chr3_2:8595060-8595079 Msa0394080:intron 30.0%
AATGAACAACTTATTCTCTC+AGG + chr3_2:8595158-8595177 Msa0394080:intron 30.0%
!!! CAGCTATATTTTGACACAAT+GGG - chr3_2:8595418-8595437 None:intergenic 30.0%
!!! TCAGCTATATTTTGACACAA+TGG - chr3_2:8595419-8595438 None:intergenic 30.0%
!! ATAGCTGAATGTTTCTGTTT+TGG + chr3_2:8595431-8595450 Msa0394080:intron 30.0%
!! TAGCTGAATGTTTCTGTTTT+GGG + chr3_2:8595432-8595451 Msa0394080:intron 30.0%
ATGTAGTGATCACAGATTTA+AGG - chr3_2:8595530-8595549 None:intergenic 30.0%
TGTAATGATCAGACATACAT+AGG + chr3_2:8596097-8596116 Msa0394080:three_prime_UTR 30.0%
CTTGAATGAAAGAAAATCAG+CGG - chr3_2:8596194-8596213 None:intergenic 30.0%
! ACTCATGGTAGTGTATCATT+AGG + chr3_2:8595020-8595039 Msa0394080:intron 35.0%
AACTTATTCTCTCAGGAAAC+TGG + chr3_2:8595165-8595184 Msa0394080:intron 35.0%
! ATATCCTCGATGATGGTTAT+CGG + chr3_2:8595266-8595285 Msa0394080:CDS 35.0%
TATGGACAGAAAGTTGTCAA+AGG + chr3_2:8595298-8595317 Msa0394080:CDS 35.0%
TCGATAAGAATGACTACCTT+GGG - chr3_2:8595333-8595352 None:intergenic 35.0%
ATCGATAAGAATGACTACCT+TGG - chr3_2:8595334-8595353 None:intergenic 35.0%
!! AGCTGAATGTTTCTGTTTTG+GGG + chr3_2:8595433-8595452 Msa0394080:intron 35.0%
CATGAATCCCATTTCATTTG+CGG - chr3_2:8595883-8595902 None:intergenic 35.0%
AATGGGATTCATGTTACCAA+AGG + chr3_2:8595890-8595909 Msa0394080:CDS 35.0%
ATGGGATTCATGTTACCAAA+GGG + chr3_2:8595891-8595910 Msa0394080:CDS 35.0%
!! ATGAGCCATTTTGCATGTTA+AGG - chr3_2:8595953-8595972 None:intergenic 35.0%
ATTATGAATCACATGCCTCT+TGG + chr3_2:8595990-8596009 Msa0394080:CDS 35.0%
!!! CGCTGATTTTCTTTCATTCA+AGG + chr3_2:8596192-8596211 Msa0394080:three_prime_UTR 35.0%
! ACTCATGGTAGTGTATCATT+AGG + chr3_2:8595020-8595039 Msa0394080:intron 35.0%
AACTTATTCTCTCAGGAAAC+TGG + chr3_2:8595165-8595184 Msa0394080:intron 35.0%
! ATATCCTCGATGATGGTTAT+CGG + chr3_2:8595266-8595285 Msa0394080:CDS 35.0%
TATGGACAGAAAGTTGTCAA+AGG + chr3_2:8595298-8595317 Msa0394080:CDS 35.0%
TCGATAAGAATGACTACCTT+GGG - chr3_2:8595333-8595352 None:intergenic 35.0%
ATCGATAAGAATGACTACCT+TGG - chr3_2:8595334-8595353 None:intergenic 35.0%
!! AGCTGAATGTTTCTGTTTTG+GGG + chr3_2:8595433-8595452 Msa0394080:intron 35.0%
CATGAATCCCATTTCATTTG+CGG - chr3_2:8595883-8595902 None:intergenic 35.0%
AATGGGATTCATGTTACCAA+AGG + chr3_2:8595890-8595909 Msa0394080:CDS 35.0%
ATGGGATTCATGTTACCAAA+GGG + chr3_2:8595891-8595910 Msa0394080:CDS 35.0%
!! ATGAGCCATTTTGCATGTTA+AGG - chr3_2:8595953-8595972 None:intergenic 35.0%
ATTATGAATCACATGCCTCT+TGG + chr3_2:8595990-8596009 Msa0394080:CDS 35.0%
!!! CGCTGATTTTCTTTCATTCA+AGG + chr3_2:8596192-8596211 Msa0394080:three_prime_UTR 35.0%
ATCTCCTGAATCAATGTGAG+TGG - chr3_2:8594946-8594965 None:intergenic 40.0%
TCATTAGGTTATGATGCGGA+AGG + chr3_2:8595035-8595054 Msa0394080:intron 40.0%
GTAGTCTGAACAACAACTCT+AGG - chr3_2:8595235-8595254 None:intergenic 40.0%
GAAGTAGATATCCTCGATGA+TGG + chr3_2:8595259-8595278 Msa0394080:CDS 40.0%
AAGAATGACTACCTTGGGTT+GGG - chr3_2:8595328-8595347 None:intergenic 40.0%
TAAGAATGACTACCTTGGGT+TGG - chr3_2:8595329-8595348 None:intergenic 40.0%
! GTCCAATCTGTCGAATTTTG+TGG + chr3_2:8595391-8595410 Msa0394080:intron 40.0%
GACCACAAAATTCGACAGAT+TGG - chr3_2:8595396-8595415 None:intergenic 40.0%
ATCTGTGATCACTACATACG+AGG + chr3_2:8595533-8595552 Msa0394080:CDS 40.0%
TCTGTGATCACTACATACGA+GGG + chr3_2:8595534-8595553 Msa0394080:CDS 40.0%
ATGGTTCAGGTCTATGCATA+TGG - chr3_2:8595659-8595678 None:intergenic 40.0%
TTGTGAACTTGAGATGGTTC+AGG - chr3_2:8595672-8595691 None:intergenic 40.0%
GAACCATCTCAAGTTCACAA+CGG + chr3_2:8595672-8595691 Msa0394080:CDS 40.0%
! TGCATCATGAATGGGTTCAT+AGG - chr3_2:8595843-8595862 None:intergenic 40.0%
GTTGTTGCTGCATCATGAAT+GGG - chr3_2:8595851-8595870 None:intergenic 40.0%
TGTTGTTGCTGCATCATGAA+TGG - chr3_2:8595852-8595871 None:intergenic 40.0%
! TTTTACATGTGAGGTCCAAG+AGG - chr3_2:8596008-8596027 None:intergenic 40.0%
ATCTCCTGAATCAATGTGAG+TGG - chr3_2:8594946-8594965 None:intergenic 40.0%
TCATTAGGTTATGATGCGGA+AGG + chr3_2:8595035-8595054 Msa0394080:intron 40.0%
GTAGTCTGAACAACAACTCT+AGG - chr3_2:8595235-8595254 None:intergenic 40.0%
GAAGTAGATATCCTCGATGA+TGG + chr3_2:8595259-8595278 Msa0394080:CDS 40.0%
AAGAATGACTACCTTGGGTT+GGG - chr3_2:8595328-8595347 None:intergenic 40.0%
TAAGAATGACTACCTTGGGT+TGG - chr3_2:8595329-8595348 None:intergenic 40.0%
! GTCCAATCTGTCGAATTTTG+TGG + chr3_2:8595391-8595410 Msa0394080:intron 40.0%
GACCACAAAATTCGACAGAT+TGG - chr3_2:8595396-8595415 None:intergenic 40.0%
ATCTGTGATCACTACATACG+AGG + chr3_2:8595533-8595552 Msa0394080:CDS 40.0%
TCTGTGATCACTACATACGA+GGG + chr3_2:8595534-8595553 Msa0394080:CDS 40.0%
ATGGTTCAGGTCTATGCATA+TGG - chr3_2:8595659-8595678 None:intergenic 40.0%
TTGTGAACTTGAGATGGTTC+AGG - chr3_2:8595672-8595691 None:intergenic 40.0%
GAACCATCTCAAGTTCACAA+CGG + chr3_2:8595672-8595691 Msa0394080:CDS 40.0%
! TGCATCATGAATGGGTTCAT+AGG - chr3_2:8595843-8595862 None:intergenic 40.0%
GTTGTTGCTGCATCATGAAT+GGG - chr3_2:8595851-8595870 None:intergenic 40.0%
TGTTGTTGCTGCATCATGAA+TGG - chr3_2:8595852-8595871 None:intergenic 40.0%
! TTTTACATGTGAGGTCCAAG+AGG - chr3_2:8596008-8596027 None:intergenic 40.0%
!! GGTACCACTCACATTGATTC+AGG + chr3_2:8594939-8594958 Msa0394080:CDS 45.0%
!! CATTGATTCAGGAGATGCAG+TGG + chr3_2:8594950-8594969 Msa0394080:CDS 45.0%
GAAGAAGAGGAAGACGATCA+AGG + chr3_2:8594996-8595015 Msa0394080:CDS 45.0%
GAATCATATGCCGAGATGAG+TGG + chr3_2:8595187-8595206 Msa0394080:CDS 45.0%
TCTAGTAGCTCCACTCATCT+CGG - chr3_2:8595200-8595219 None:intergenic 45.0%
ATCGAGGATATCTACTTCGC+TGG - chr3_2:8595257-8595276 None:intergenic 45.0%
TCAAAGGAAATCCCAACCCA+AGG + chr3_2:8595314-8595333 Msa0394080:CDS 45.0%
!!! ATGTTTCTGTTTTGGGGTGC+AGG + chr3_2:8595439-8595458 Msa0394080:intron 45.0%
TACTACAAGTGCACCAATGC+AGG + chr3_2:8595465-8595484 Msa0394080:CDS 45.0%
ACTACAAGTGCACCAATGCA+GGG + chr3_2:8595466-8595485 Msa0394080:CDS 45.0%
AATGCTTCTAACGCAGCTCA+AGG + chr3_2:8595609-8595628 Msa0394080:CDS 45.0%
ATGCCGTTGTGAACTTGAGA+TGG - chr3_2:8595678-8595697 None:intergenic 45.0%
AACCTTGCAATGTCGGGATT+GGG + chr3_2:8595786-8595805 Msa0394080:CDS 45.0%
! AATGGGTTCATAGGCATTCC+AGG - chr3_2:8595834-8595853 None:intergenic 45.0%
ACCAAAGGGAGAACCAAATG+TGG + chr3_2:8595905-8595924 Msa0394080:CDS 45.0%
!! TCCACATTTGGTTCTCCCTT+TGG - chr3_2:8595909-8595928 None:intergenic 45.0%
! TCAGGATTAGCGTCCACATT+TGG - chr3_2:8595921-8595940 None:intergenic 45.0%
!! GGTACCACTCACATTGATTC+AGG + chr3_2:8594939-8594958 Msa0394080:CDS 45.0%
!! CATTGATTCAGGAGATGCAG+TGG + chr3_2:8594950-8594969 Msa0394080:CDS 45.0%
GAAGAAGAGGAAGACGATCA+AGG + chr3_2:8594996-8595015 Msa0394080:CDS 45.0%
GAATCATATGCCGAGATGAG+TGG + chr3_2:8595187-8595206 Msa0394080:CDS 45.0%
TCTAGTAGCTCCACTCATCT+CGG - chr3_2:8595200-8595219 None:intergenic 45.0%
ATCGAGGATATCTACTTCGC+TGG - chr3_2:8595257-8595276 None:intergenic 45.0%
TCAAAGGAAATCCCAACCCA+AGG + chr3_2:8595314-8595333 Msa0394080:CDS 45.0%
!!! ATGTTTCTGTTTTGGGGTGC+AGG + chr3_2:8595439-8595458 Msa0394080:intron 45.0%
TACTACAAGTGCACCAATGC+AGG + chr3_2:8595465-8595484 Msa0394080:CDS 45.0%
ACTACAAGTGCACCAATGCA+GGG + chr3_2:8595466-8595485 Msa0394080:CDS 45.0%
AATGCTTCTAACGCAGCTCA+AGG + chr3_2:8595609-8595628 Msa0394080:CDS 45.0%
ATGCCGTTGTGAACTTGAGA+TGG - chr3_2:8595678-8595697 None:intergenic 45.0%
AACCTTGCAATGTCGGGATT+GGG + chr3_2:8595786-8595805 Msa0394080:CDS 45.0%
! AATGGGTTCATAGGCATTCC+AGG - chr3_2:8595834-8595853 None:intergenic 45.0%
ACCAAAGGGAGAACCAAATG+TGG + chr3_2:8595905-8595924 Msa0394080:CDS 45.0%
!! TCCACATTTGGTTCTCCCTT+TGG - chr3_2:8595909-8595928 None:intergenic 45.0%
! TCAGGATTAGCGTCCACATT+TGG - chr3_2:8595921-8595940 None:intergenic 45.0%
!!! TTTTTTTTCAAAAATAAAAA+AGG - chr3_2:8595113-8595132 None:intergenic 5.0%
!!! TTTTTTTTCAAAAATAAAAA+AGG - chr3_2:8595113-8595132 None:intergenic 5.0%
! GAAGACGATCAAGGCACTCA+TGG + chr3_2:8595005-8595024 Msa0394080:CDS 50.0%
AACAACTCTAGGCTCGCGAA+TGG - chr3_2:8595224-8595243 None:intergenic 50.0%
! TCCTCGATGATGGTTATCGG+TGG + chr3_2:8595269-8595288 Msa0394080:CDS 50.0%
! TCGATGATGGTTATCGGTGG+CGG + chr3_2:8595272-8595291 Msa0394080:CDS 50.0%
!! GGTTATCGGTGGCGGAAATA+TGG + chr3_2:8595280-8595299 Msa0394080:CDS 50.0%
! GTGCACTGTAAGGAAGCATG+TGG + chr3_2:8595488-8595507 Msa0394080:CDS 50.0%
! ATTCGCATTGACGTGACTGC+TGG - chr3_2:8595592-8595611 None:intergenic 50.0%
CTCAAGTTCACAACGGCATG+AGG + chr3_2:8595679-8595698 Msa0394080:CDS 50.0%
AGGTTGAACGAACCAAGCGA+AGG - chr3_2:8595705-8595724 None:intergenic 50.0%
! CTTGGTTCGTTCAACCTTCC+CGG + chr3_2:8595708-8595727 Msa0394080:CDS 50.0%
! TTGGTTCGTTCAACCTTCCC+GGG + chr3_2:8595709-8595728 Msa0394080:CDS 50.0%
TTCATGCCGAAGAAGCCATG+CGG - chr3_2:8595753-8595772 None:intergenic 50.0%
CCTGTCGAACCTTGCAATGT+CGG + chr3_2:8595779-8595798 Msa0394080:CDS 50.0%
CTGTCGAACCTTGCAATGTC+GGG + chr3_2:8595780-8595799 Msa0394080:CDS 50.0%
GAACCTTGCAATGTCGGGAT+TGG + chr3_2:8595785-8595804 Msa0394080:CDS 50.0%
GAAGCTTTGCTTGCGAGGAA+GGG - chr3_2:8595812-8595831 None:intergenic 50.0%
CAACGCGCCGCAAATGAAAT+GGG + chr3_2:8595873-8595892 Msa0394080:CDS 50.0%
GGCGGCCTTAACATGCAAAA+TGG + chr3_2:8595945-8595964 Msa0394080:CDS 50.0%
! GAAGACGATCAAGGCACTCA+TGG + chr3_2:8595005-8595024 Msa0394080:CDS 50.0%
AACAACTCTAGGCTCGCGAA+TGG - chr3_2:8595224-8595243 None:intergenic 50.0%
! TCCTCGATGATGGTTATCGG+TGG + chr3_2:8595269-8595288 Msa0394080:CDS 50.0%
! TCGATGATGGTTATCGGTGG+CGG + chr3_2:8595272-8595291 Msa0394080:CDS 50.0%
!! GGTTATCGGTGGCGGAAATA+TGG + chr3_2:8595280-8595299 Msa0394080:CDS 50.0%
! GTGCACTGTAAGGAAGCATG+TGG + chr3_2:8595488-8595507 Msa0394080:CDS 50.0%
! ATTCGCATTGACGTGACTGC+TGG - chr3_2:8595592-8595611 None:intergenic 50.0%
CTCAAGTTCACAACGGCATG+AGG + chr3_2:8595679-8595698 Msa0394080:CDS 50.0%
AGGTTGAACGAACCAAGCGA+AGG - chr3_2:8595705-8595724 None:intergenic 50.0%
! CTTGGTTCGTTCAACCTTCC+CGG + chr3_2:8595708-8595727 Msa0394080:CDS 50.0%
! TTGGTTCGTTCAACCTTCCC+GGG + chr3_2:8595709-8595728 Msa0394080:CDS 50.0%
TTCATGCCGAAGAAGCCATG+CGG - chr3_2:8595753-8595772 None:intergenic 50.0%
CCTGTCGAACCTTGCAATGT+CGG + chr3_2:8595779-8595798 Msa0394080:CDS 50.0%
CTGTCGAACCTTGCAATGTC+GGG + chr3_2:8595780-8595799 Msa0394080:CDS 50.0%
GAACCTTGCAATGTCGGGAT+TGG + chr3_2:8595785-8595804 Msa0394080:CDS 50.0%
GAAGCTTTGCTTGCGAGGAA+GGG - chr3_2:8595812-8595831 None:intergenic 50.0%
CAACGCGCCGCAAATGAAAT+GGG + chr3_2:8595873-8595892 Msa0394080:CDS 50.0%
GGCGGCCTTAACATGCAAAA+TGG + chr3_2:8595945-8595964 Msa0394080:CDS 50.0%
GCCACCGATAACCATCATCG+AGG - chr3_2:8595273-8595292 None:intergenic 55.0%
CCTTACAGTGCACCCTGCAT+TGG - chr3_2:8595481-8595500 None:intergenic 55.0%
CCAATGCAGGGTGCACTGTA+AGG + chr3_2:8595478-8595497 Msa0394080:CDS 55.0%
GCAGCTCAAGGACAAGCTTC+TGG + chr3_2:8595621-8595640 Msa0394080:CDS 55.0%
ATGACCTAGCTGCTGTCTCC+CGG - chr3_2:8595730-8595749 None:intergenic 55.0%
GGTCATCCGCATGGCTTCTT+CGG + chr3_2:8595744-8595763 Msa0394080:CDS 55.0%
CCGACATTGCAAGGTTCGAC+AGG - chr3_2:8595782-8595801 None:intergenic 55.0%
GGAAGCTTTGCTTGCGAGGA+AGG - chr3_2:8595813-8595832 None:intergenic 55.0%
TCCTCGCAAGCAAAGCTTCC+TGG + chr3_2:8595813-8595832 Msa0394080:CDS 55.0%
TCCAGGAAGCTTTGCTTGCG+AGG - chr3_2:8595817-8595836 None:intergenic 55.0%
GCAACGCGCCGCAAATGAAA+TGG + chr3_2:8595872-8595891 Msa0394080:CDS 55.0%
GTGGACGCTAATCCTGAACG+CGG + chr3_2:8595924-8595943 Msa0394080:CDS 55.0%
GCCACCGATAACCATCATCG+AGG - chr3_2:8595273-8595292 None:intergenic 55.0%
CCTTACAGTGCACCCTGCAT+TGG - chr3_2:8595481-8595500 None:intergenic 55.0%
CCAATGCAGGGTGCACTGTA+AGG + chr3_2:8595478-8595497 Msa0394080:CDS 55.0%
GCAGCTCAAGGACAAGCTTC+TGG + chr3_2:8595621-8595640 Msa0394080:CDS 55.0%
ATGACCTAGCTGCTGTCTCC+CGG - chr3_2:8595730-8595749 None:intergenic 55.0%
GGTCATCCGCATGGCTTCTT+CGG + chr3_2:8595744-8595763 Msa0394080:CDS 55.0%
CCGACATTGCAAGGTTCGAC+AGG - chr3_2:8595782-8595801 None:intergenic 55.0%
GGAAGCTTTGCTTGCGAGGA+AGG - chr3_2:8595813-8595832 None:intergenic 55.0%
TCCTCGCAAGCAAAGCTTCC+TGG + chr3_2:8595813-8595832 Msa0394080:CDS 55.0%
TCCAGGAAGCTTTGCTTGCG+AGG - chr3_2:8595817-8595836 None:intergenic 55.0%
GCAACGCGCCGCAAATGAAA+TGG + chr3_2:8595872-8595891 Msa0394080:CDS 55.0%
GTGGACGCTAATCCTGAACG+CGG + chr3_2:8595924-8595943 Msa0394080:CDS 55.0%
TGACTGCTGGAACGAGCAGC+GGG - chr3_2:8595579-8595598 None:intergenic 60.0%
GTGACTGCTGGAACGAGCAG+CGG - chr3_2:8595580-8595599 None:intergenic 60.0%
AACGGCATGAGGCCTTCGCT+TGG + chr3_2:8595690-8595709 Msa0394080:CDS 60.0%
TGACCTAGCTGCTGTCTCCC+GGG - chr3_2:8595729-8595748 None:intergenic 60.0%
CAGCAGCTAGGTCATCCGCA+TGG + chr3_2:8595735-8595754 Msa0394080:CDS 60.0%
GGCCCAATCCCGACATTGCA+AGG - chr3_2:8595791-8595810 None:intergenic 60.0%
GACGCTAATCCTGAACGCGG+CGG + chr3_2:8595927-8595946 Msa0394080:CDS 60.0%
ATGTTAAGGCCGCCGCGTTC+AGG - chr3_2:8595939-8595958 None:intergenic 60.0%
TGACTGCTGGAACGAGCAGC+GGG - chr3_2:8595579-8595598 None:intergenic 60.0%
GTGACTGCTGGAACGAGCAG+CGG - chr3_2:8595580-8595599 None:intergenic 60.0%
AACGGCATGAGGCCTTCGCT+TGG + chr3_2:8595690-8595709 Msa0394080:CDS 60.0%
TGACCTAGCTGCTGTCTCCC+GGG - chr3_2:8595729-8595748 None:intergenic 60.0%
CAGCAGCTAGGTCATCCGCA+TGG + chr3_2:8595735-8595754 Msa0394080:CDS 60.0%
GGCCCAATCCCGACATTGCA+AGG - chr3_2:8595791-8595810 None:intergenic 60.0%
GACGCTAATCCTGAACGCGG+CGG + chr3_2:8595927-8595946 Msa0394080:CDS 60.0%
ATGTTAAGGCCGCCGCGTTC+AGG - chr3_2:8595939-8595958 None:intergenic 60.0%
GACTGCTGGAACGAGCAGCG+GGG - chr3_2:8595578-8595597 None:intergenic 65.0%
CTAGCTGCTGTCTCCCGGGA+AGG - chr3_2:8595725-8595744 None:intergenic 65.0%
CTTCCCGGGAGACAGCAGCT+AGG + chr3_2:8595723-8595742 Msa0394080:CDS 65.0%
GACTGCTGGAACGAGCAGCG+GGG - chr3_2:8595578-8595597 None:intergenic 65.0%
CTAGCTGCTGTCTCCCGGGA+AGG - chr3_2:8595725-8595744 None:intergenic 65.0%
CTTCCCGGGAGACAGCAGCT+AGG + chr3_2:8595723-8595742 Msa0394080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 8594937 8596224 8594937 ID=Msa0394080;Name=Msa0394080
chr3_2 mRNA 8594937 8596224 8594937 ID=Msa0394080-mRNA-1;Parent=Msa0394080;Name=Msa0394080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.66|0.66|1|1|3|199|271
chr3_2 exon 8594937 8595031 8594937 ID=Msa0394080-mRNA-1:exon:2212;Parent=Msa0394080-mRNA-1
chr3_2 exon 8595180 8595335 8595180 ID=Msa0394080-mRNA-1:exon:2213;Parent=Msa0394080-mRNA-1
chr3_2 exon 8595461 8596224 8595461 ID=Msa0394080-mRNA-1:exon:2214;Parent=Msa0394080-mRNA-1
chr3_2 CDS 8594937 8595031 8594937 ID=Msa0394080-mRNA-1:cds;Parent=Msa0394080-mRNA-1
chr3_2 CDS 8595180 8595335 8595180 ID=Msa0394080-mRNA-1:cds;Parent=Msa0394080-mRNA-1
chr3_2 CDS 8595461 8596025 8595461 ID=Msa0394080-mRNA-1:cds;Parent=Msa0394080-mRNA-1
chr3_2 three_prime_UTR 8596026 8596224 8596026 ID=Msa0394080-mRNA-1:three_prime_utr;Parent=Msa0394080-mRNA-1
Gene Sequence

>Msa0394080

ATGGTACCACTCACATTGATTCAGGAGATGCAGTGGATCGCTCGTCTACATTTTCAAATGAAGAAGAGGAAGACGATCAAGGCACTCATGGTAGTGAAACTGGAATCATATGCCGAGATGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTTCAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATATGGACAGAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATACGAGGGAAAGCACAATCACGATGTCCCCGCTGCTCGTTCCAGCAGTCACGTCAATGCGAATGCTTCTAACGCAGCTCAAGGACAAGCTTCTGGTCTTCTTCAAAACCATATGCATAGACCTGAACCATCTCAAGTTCACAACGGCATGAGGCCTTCGCTTGGTTCGTTCAACCTTCCCGGGAGACAGCAGCTAGGTCATCCGCATGGCTTCTTCGGCATGAATCAACACCTGTCGAACCTTGCAATGTCGGGATTGGGCCCTTCCTCGCAAGCAAAGCTTCCTGGAATGCCTATGAACCCATTCATGATGCAGCAACAACAGCAACGCGCCGCAAATGAAATGGGATTCATGTTACCAAAGGGAGAACCAAATGTGGACGCTAATCCTGAACGCGGCGGCCTTAACATGCAAAATGGCTCATCATCAATGTATCAAGATATTATGAATCACATGCCTCTTGGACCTCACATGTAA
Protein sequence

>Msa0394080

MVPLTLIQEMQWIARLHFQMKKRKTIKALMVVKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASNAAQGQASGLLQNHMHRPEPSQVHNGMRPSLGSFNLPGRQQLGHPHGFFGMNQHLSNLAMSGLGPSSQAKLPGMPMNPFMMQQQQQRAANEMGFMLPKGEPNVDANPERGGLNMQNGSSSMYQDIMNHMPLGPHM*