Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394310 | AES68536.1 | 85.609 | 271 | 17 | 1 | 17 | 287 | 26 | 274 | 1.04e-162 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394310 | sp|Q9LTT3|HMG10_ARATH | 45.486 | 288 | 110 | 5 | 25 | 279 | 34 | 307 | 2.41e-71 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394310 | G7J0D1 | 85.609 | 271 | 17 | 1 | 17 | 287 | 26 | 274 | 4.96e-163 | 464 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0394310 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394310 | MtrunA17_Chr3g0079841 | 85.609 | 271 | 17 | 1 | 17 | 287 | 26 | 274 | 9.55e-167 | 464 |
| Msa0394310 | MtrunA17_Chr1g0213311 | 40.439 | 319 | 135 | 7 | 12 | 277 | 15 | 331 | 1.04e-60 | 198 |
| Msa0394310 | MtrunA17_Chr3g0143581 | 49.286 | 140 | 69 | 1 | 1 | 138 | 1 | 140 | 7.31e-41 | 140 |
| Msa0394310 | MtrunA17_Chr7g0214501 | 36.000 | 225 | 83 | 3 | 83 | 277 | 3 | 196 | 1.45e-28 | 111 |
| Msa0394310 | MtrunA17_Chr2g0320431 | 87.719 | 57 | 7 | 0 | 159 | 215 | 215 | 271 | 1.13e-24 | 100 |
| Msa0394310 | MtrunA17_Chr7g0214491 | 56.667 | 60 | 26 | 0 | 21 | 80 | 26 | 85 | 2.53e-16 | 73.6 |
| Msa0394310 | MtrunA17_Chr5g0435401 | 25.105 | 239 | 154 | 6 | 37 | 270 | 46 | 264 | 2.78e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394310 | AT3G13350.1 | 45.486 | 288 | 110 | 5 | 25 | 279 | 34 | 307 | 2.45e-72 | 226 |
| Msa0394310 | AT1G55650.1 | 40.221 | 271 | 128 | 7 | 26 | 278 | 29 | 283 | 6.94e-59 | 192 |
| Msa0394310 | AT1G04880.1 | 37.461 | 323 | 144 | 7 | 16 | 280 | 14 | 336 | 6.06e-57 | 190 |
| Msa0394310 | AT1G76110.1 | 37.124 | 299 | 142 | 5 | 21 | 277 | 28 | 322 | 1.02e-53 | 178 |
Find 82 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTCTATACCTGTCTTTC+TGG | 0.121212 | 3_2:+8882527 | None:intergenic |
| TTCGTGATGCTAACCTCTTC+TGG | 0.176030 | 3_2:-8885464 | Msa0394310:CDS |
| GACATATCTGGTGTAAATTA+TGG | 0.203821 | 3_2:-8880780 | Msa0394310:three_prime_UTR |
| GGAGCAATTAGTAGGAAAAT+TGG | 0.205100 | 3_2:-8882575 | Msa0394310:CDS |
| GTTCAGTCTCACGCGGATTT+TGG | 0.242316 | 3_2:+8885532 | None:intergenic |
| TGTTTCAAGCAATGCATCTA+AGG | 0.259440 | 3_2:-8882753 | Msa0394310:CDS |
| CTCCTCAATGGACTCTTATA+TGG | 0.283347 | 3_2:-8880920 | Msa0394310:CDS |
| TAATTTAATGCAGGTTTATC+AGG | 0.284330 | 3_2:-8881009 | Msa0394310:intron |
| TATCAATGATTCACCTGTTC+AGG | 0.286987 | 3_2:-8884037 | Msa0394310:CDS |
| AGGTAATTGTAGATCGTAAA+TGG | 0.317695 | 3_2:-8884335 | Msa0394310:CDS |
| GAGAAAACTGATAGCTTAGA+AGG | 0.319173 | 3_2:-8880813 | Msa0394310:three_prime_UTR |
| TGTGTAGGATTCCTACTATA+GGG | 0.338046 | 3_2:-8884648 | Msa0394310:intron |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.354657 | 3_2:+8882875 | None:intergenic |
| GAGCAATTAGTAGGAAAATT+GGG | 0.369568 | 3_2:-8882574 | Msa0394310:CDS |
| CATAACAAGCGCATCATTCA+TGG | 0.386953 | 3_2:-8884277 | Msa0394310:CDS |
| AAGTCTATACCTGTCTTTCT+GGG | 0.390289 | 3_2:+8882528 | None:intergenic |
| CGTATTGGTTGTGAAGCTAT+TGG | 0.406695 | 3_2:+8884071 | None:intergenic |
| TTCATTGACTTACCCTGAAC+AGG | 0.413930 | 3_2:+8884024 | None:intergenic |
| AAGCTATGTATTATAATTCA+AGG | 0.416136 | 3_2:-8880666 | Msa0394310:three_prime_UTR |
| TGCAGGTTTATCAGGAGAAA+AGG | 0.428315 | 3_2:-8881001 | Msa0394310:intron |
| TTGTGTAGGATTCCTACTAT+AGG | 0.432421 | 3_2:-8884649 | Msa0394310:intron |
| GTGATAAAGCAACGATAGAT+AGG | 0.439414 | 3_2:+8884245 | None:intergenic |
| TCGTGATGCTAACCTCTTCT+GGG | 0.445073 | 3_2:-8885463 | Msa0394310:CDS |
| CATGAATGATGCGCTTGTTA+TGG | 0.445119 | 3_2:+8884278 | None:intergenic |
| GAGTAGAGAGCGGTTGGAGG+AGG | 0.454942 | 3_2:+8885495 | None:intergenic |
| TCTAAGGGTTCTTCTATTGA+AGG | 0.459768 | 3_2:-8882737 | Msa0394310:intron |
| TCCTTGTGGCCTGCAAAATG+AGG | 0.463327 | 3_2:+8882595 | None:intergenic |
| ACAATTGACATGAAATTTGA+TGG | 0.468681 | 3_2:-8882833 | Msa0394310:CDS |
| ATATATAGTTACGGTGGACC+TGG | 0.474943 | 3_2:-8882807 | Msa0394310:CDS |
| GATAGCAGCACCGTCCGTAT+TGG | 0.475279 | 3_2:+8884056 | None:intergenic |
| ATCTCGTGGTGGTATTGAAA+AGG | 0.485522 | 3_2:-8884584 | Msa0394310:intron |
| GCAAAATGAGGGCTTTAGCC+TGG | 0.485928 | 3_2:+8882607 | None:intergenic |
| CTTCACTAACCAGGTGTTGA+GGG | 0.490947 | 3_2:+8884186 | None:intergenic |
| CCAACGGTTCAGCTCCTCAA+TGG | 0.491008 | 3_2:-8880932 | Msa0394310:CDS |
| CTCTATCCAGATGCTTTGAG+TGG | 0.513745 | 3_2:-8884102 | Msa0394310:intron |
| CATTGCTTGAAACATGATAC+AGG | 0.516873 | 3_2:+8882762 | None:intergenic |
| ATCAATGATTCACCTGTTCA+GGG | 0.519797 | 3_2:-8884036 | Msa0394310:intron |
| CCTTGTGGCCTGCAAAATGA+GGG | 0.521599 | 3_2:+8882596 | None:intergenic |
| TCTGACAGACCCAGAAAGAC+AGG | 0.531673 | 3_2:-8882537 | Msa0394310:intron |
| TTCCTACTAATTGCTCCTTG+TGG | 0.533197 | 3_2:+8882581 | None:intergenic |
| AGGTCAGAGTAGAGAGCGGT+TGG | 0.533695 | 3_2:+8885489 | None:intergenic |
| TCAGAGTAGAGAGCGGTTGG+AGG | 0.537076 | 3_2:+8885492 | None:intergenic |
| GGAAAATTGGGTTTGCGTGG+AGG | 0.541228 | 3_2:-8882562 | Msa0394310:CDS |
| CAATAGCTTCACAACCAATA+CGG | 0.543956 | 3_2:-8884070 | Msa0394310:CDS |
| TGATGGCGGATATATAGTTA+CGG | 0.545231 | 3_2:-8882816 | Msa0394310:CDS |
| CAAGTCCCTCCCTCAACACC+TGG | 0.550783 | 3_2:-8884195 | Msa0394310:intron |
| ATTAGTCCAGCACAGACACT+TGG | 0.556813 | 3_2:-8882872 | Msa0394310:CDS |
| CCATTGAGGAGCTGAACCGT+TGG | 0.557440 | 3_2:+8880932 | None:intergenic |
| GGCCACAAGGAGCAATTAGT+AGG | 0.560286 | 3_2:-8882583 | Msa0394310:CDS |
| GAAGAACCAAGTGTCTGTGC+TGG | 0.560864 | 3_2:+8882866 | None:intergenic |
| ATGCGCTTGTTATGGTATCT+CGG | 0.562285 | 3_2:+8884286 | None:intergenic |
| CTTCAACGAAGAGGTGATGC+AGG | 0.562980 | 3_2:+8884611 | None:intergenic |
| GTTTCAAGCAATGCATCTAA+GGG | 0.563003 | 3_2:-8882752 | Msa0394310:CDS |
| TATCAGGAGAAAAGGTTGAG+AGG | 0.569076 | 3_2:-8880993 | Msa0394310:CDS |
| GTGTAGGATTCCTACTATAG+GGG | 0.574437 | 3_2:-8884647 | Msa0394310:intron |
| TTCGTTGAAGTAACATCTCG+TGG | 0.581244 | 3_2:-8884598 | Msa0394310:CDS |
| TCTTCACTAACCAGGTGTTG+AGG | 0.585501 | 3_2:+8884185 | None:intergenic |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 3_2:-8882788 | Msa0394310:CDS |
| GTAGGAAAATTGGGTTTGCG+TGG | 0.592801 | 3_2:-8882565 | Msa0394310:CDS |
| GAGCGGTTGGAGGAGGACAA+AGG | 0.594063 | 3_2:+8885502 | None:intergenic |
| CACTAACCAGGTGTTGAGGG+AGG | 0.596662 | 3_2:+8884189 | None:intergenic |
| AATTGTAGATCGTAAATGGA+AGG | 0.598698 | 3_2:-8884331 | Msa0394310:CDS |
| AAGAGGTGATGCAGGTCTAG+TGG | 0.600590 | 3_2:+8884619 | None:intergenic |
| ACACTTGGTTCTTCAGTGCG+TGG | 0.611516 | 3_2:-8882857 | Msa0394310:CDS |
| TGTAGATCGTAAATGGAAGG+AGG | 0.611934 | 3_2:-8884328 | Msa0394310:CDS |
| ATCAAAGAACAAAAGATCTG+AGG | 0.613179 | 3_2:+8880894 | None:intergenic |
| AGAAAACTGATAGCTTAGAA+GGG | 0.617589 | 3_2:-8880812 | Msa0394310:three_prime_UTR |
| AGAGGTTAGCATCACGAACA+AGG | 0.617590 | 3_2:+8885469 | None:intergenic |
| ACTAACCAGGTGTTGAGGGA+GGG | 0.618972 | 3_2:+8884190 | None:intergenic |
| TATATAGTTACGGTGGACCT+GGG | 0.620088 | 3_2:-8882806 | Msa0394310:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 3_2:+8882789 | None:intergenic |
| AGCTTCACAACCAATACGGA+CGG | 0.629115 | 3_2:-8884066 | Msa0394310:CDS |
| TGTAGGATTCCTACTATAGG+GGG | 0.629514 | 3_2:-8884646 | Msa0394310:intron |
| ATGTTGAAGTACAAATCCAA+CGG | 0.669092 | 3_2:-8880948 | Msa0394310:CDS |
| ATTGACATGAAATTTGATGG+CGG | 0.676313 | 3_2:-8882830 | Msa0394310:CDS |
| ATATCTGGTGTAAATTATGG+CGG | 0.678646 | 3_2:-8880777 | Msa0394310:three_prime_UTR |
| TTCCATATAAGAGTCCATTG+AGG | 0.690563 | 3_2:+8880918 | None:intergenic |
| AACAAGGTCAGAGTAGAGAG+CGG | 0.693390 | 3_2:+8885485 | None:intergenic |
| GAGATGTTACTTCAACGAAG+AGG | 0.709606 | 3_2:+8884602 | None:intergenic |
| TGGCGGATATATAGTTACGG+TGG | 0.725652 | 3_2:-8882813 | Msa0394310:CDS |
| TTTGTGAGTTCAGTCTCACG+CGG | 0.743764 | 3_2:+8885525 | None:intergenic |
| GTTGAAGTAACATCTCGTGG+TGG | 0.754811 | 3_2:-8884595 | Msa0394310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAAAAATTGTATTTTAT+TGG | - | chr3_2:8881055-8881074 | Msa0394310:intron | 10.0% |
| !! | TAAAATTAGTAATATATGTA+TGG | - | chr3_2:8883911-8883930 | Msa0394310:intron | 10.0% |
| !!! | TTTTATTGGATAGTATAATA+TGG | - | chr3_2:8881069-8881088 | Msa0394310:intron | 15.0% |
| !!! | TTTTATGCACAAAAAAATAT+AGG | - | chr3_2:8881209-8881228 | Msa0394310:intron | 15.0% |
| !! | AAATTTAAGAAAAAGATTAG+AGG | + | chr3_2:8881841-8881860 | None:intergenic | 15.0% |
| !!! | TCTTTTTCTTAAATTTATGT+AGG | - | chr3_2:8881845-8881864 | Msa0394310:intron | 15.0% |
| !!! | TTTTTTTTAATCTCTTGTTA+CGG | - | chr3_2:8882722-8882741 | Msa0394310:intron | 15.0% |
| !!! | ATGATTTGTTTCTTTAATTT+AGG | - | chr3_2:8882818-8882837 | Msa0394310:CDS | 15.0% |
| !! | TTGAATTCCTTAAAATATTT+AGG | - | chr3_2:8884218-8884237 | Msa0394310:CDS | 15.0% |
| !! | TGAATTCCTTAAAATATTTA+GGG | - | chr3_2:8884219-8884238 | Msa0394310:CDS | 15.0% |
| !!! | AATTAACCCTAAATATTTTA+AGG | + | chr3_2:8884228-8884247 | None:intergenic | 15.0% |
| !! | TAAAATTCTGAATATTTACA+GGG | + | chr3_2:8884262-8884281 | None:intergenic | 15.0% |
| !! | ATAAAATTCTGAATATTTAC+AGG | + | chr3_2:8884263-8884282 | None:intergenic | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+GGG | + | chr3_2:8884451-8884470 | None:intergenic | 15.0% |
| !!! | AAAGTGTGATTTTATTTTAT+AGG | + | chr3_2:8884450-8884469 | None:intergenic | 15.0% |
| !!! | AAAGTGTGATTTTATTTTAT+AGG | - | chr3_2:8884450-8884469 | Msa0394310:intron | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+GGG | - | chr3_2:8884451-8884470 | Msa0394310:intron | 15.0% |
| !! | CAACAAATCTATAAATATTT+GGG | + | chr3_2:8884525-8884544 | None:intergenic | 15.0% |
| !! | ACAACAAATCTATAAATATT+TGG | + | chr3_2:8884526-8884545 | None:intergenic | 15.0% |
| !! | AAATTCTACTTATGAAAAAA+TGG | - | chr3_2:8884769-8884788 | Msa0394310:intron | 15.0% |
| !!! | TCTTAGTTTTATATGAAAAT+AGG | - | chr3_2:8884794-8884813 | Msa0394310:intron | 15.0% |
| !!! | CTTAGTTTTATATGAAAATA+GGG | - | chr3_2:8884795-8884814 | Msa0394310:intron | 15.0% |
| !! | TGCATTAAATTAACAAAAAA+TGG | + | chr3_2:8885183-8885202 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTAATTTAATGC+AGG | - | chr3_2:8885182-8885201 | Msa0394310:intron | 15.0% |
| !!! | AATCATGATTTGTTAAGAAT+GGG | + | chr3_2:8881099-8881118 | None:intergenic | 20.0% |
| !! | GAAAATCTTGAATTATTGTT+AGG | + | chr3_2:8881254-8881273 | None:intergenic | 20.0% |
| !! | TATGACAAAAGAAATATGAT+TGG | - | chr3_2:8881287-8881306 | Msa0394310:intron | 20.0% |
| !! | AGGATTTATCTTAATGAATT+AGG | - | chr3_2:8881388-8881407 | Msa0394310:intron | 20.0% |
| !!! | ATTTTCAAAACGTAATTAGA+GGG | + | chr3_2:8882052-8882071 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAACGTAATTAG+AGG | + | chr3_2:8882053-8882072 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTATGTTTTTATG+TGG | - | chr3_2:8882407-8882426 | Msa0394310:intron | 20.0% |
| !!! | TTTTTTTAATCTCTTGTTAC+GGG | - | chr3_2:8882723-8882742 | Msa0394310:intron | 20.0% |
| !!! | TTTAATTTGTCTTACAAATC+AGG | - | chr3_2:8883867-8883886 | Msa0394310:intron | 20.0% |
| !!! | TTTAGGGTTAATTAAGTAAA+TGG | - | chr3_2:8884235-8884254 | Msa0394310:CDS | 20.0% |
| !!! | GCTAATGGAAAAATTTTATA+GGG | + | chr3_2:8884353-8884372 | None:intergenic | 20.0% |
| !!! | TGCTAATGGAAAAATTTTAT+AGG | + | chr3_2:8884354-8884373 | None:intergenic | 20.0% |
| !!! | GTTGATGGAAATTTTTTATA+GGG | + | chr3_2:8884385-8884404 | None:intergenic | 20.0% |
| !!! | TGTTGATGGAAATTTTTTAT+AGG | + | chr3_2:8884386-8884405 | None:intergenic | 20.0% |
| !!! | AAAATTTCCATCAACATTTT+TGG | - | chr3_2:8884390-8884409 | Msa0394310:intron | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | - | chr3_2:8884481-8884500 | Msa0394310:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | - | chr3_2:8884482-8884501 | Msa0394310:intron | 20.0% |
| !! | TGTCTTTATAATTATCTATG+TGG | - | chr3_2:8884955-8884974 | Msa0394310:intron | 20.0% |
| !!! | ATCTGTTAGAACTTATATTT+TGG | - | chr3_2:8885131-8885150 | Msa0394310:intron | 20.0% |
| !! | AAGCTATGTATTATAATTCA+AGG | - | chr3_2:8885534-8885553 | Msa0394310:CDS | 20.0% |
| ! | GCAGAAAAAACACTAAAAAA+TGG | + | chr3_2:8880899-8880918 | None:intergenic | 25.0% |
| !!! | ATTCTTAGTTTTCGATTTTG+TGG | - | chr3_2:8880921-8880940 | Msa0394310:CDS | 25.0% |
| !!! | TTCTTAGTTTTCGATTTTGT+GGG | - | chr3_2:8880922-8880941 | Msa0394310:CDS | 25.0% |
| ! | GTCAATTTCATTTGTATGAT+GGG | - | chr3_2:8880949-8880968 | Msa0394310:CDS | 25.0% |
| !!! | GAATCATGATTTGTTAAGAA+TGG | + | chr3_2:8881100-8881119 | None:intergenic | 25.0% |
| ! | TGATTCAGATTATTGTGAAT+CGG | - | chr3_2:8881114-8881133 | Msa0394310:intron | 25.0% |
| ! | AGGGCAAAACATTATTATTA+GGG | + | chr3_2:8881525-8881544 | None:intergenic | 25.0% |
| ! | AAGGGCAAAACATTATTATT+AGG | + | chr3_2:8881526-8881545 | None:intergenic | 25.0% |
| !! | AATTAGTAGAGAAGTATACA+AGG | + | chr3_2:8881648-8881667 | None:intergenic | 25.0% |
| ! | GAAAACACATAAGAAAGTAA+AGG | + | chr3_2:8881711-8881730 | None:intergenic | 25.0% |
| !! | ATTAAAACAGCTTTTCAGTT+TGG | - | chr3_2:8881747-8881766 | Msa0394310:intron | 25.0% |
| !! | ATATTTTTCTGTGATGTATG+TGG | - | chr3_2:8882649-8882668 | Msa0394310:intron | 25.0% |
| !!! | TGCTTCTTTTATTTTGAAAC+TGG | - | chr3_2:8882767-8882786 | Msa0394310:CDS | 25.0% |
| ! | AGAAACAAATCATCTAAGAA+TGG | + | chr3_2:8882811-8882830 | None:intergenic | 25.0% |
| ! | GTACACAAAGCTAAAAAAAA+TGG | + | chr3_2:8882849-8882868 | None:intergenic | 25.0% |
| ! | TTTGTGTACATCTAATCTTA+TGG | - | chr3_2:8882860-8882879 | Msa0394310:CDS | 25.0% |
| ! | ATATACTTTCCATTTATCTG+TGG | - | chr3_2:8883272-8883291 | Msa0394310:intron | 25.0% |
| ! | AAATCTTTACCACAGATAAA+TGG | + | chr3_2:8883284-8883303 | None:intergenic | 25.0% |
| ! | ACAATTGACATGAAATTTGA+TGG | - | chr3_2:8883367-8883386 | Msa0394310:intron | 25.0% |
| ! | TGTCAGTTACAAAAAGAAAA+AGG | + | chr3_2:8883752-8883771 | None:intergenic | 25.0% |
| !! | ATATCTGGAATAGTTTATTC+AGG | - | chr3_2:8883830-8883849 | Msa0394310:intron | 25.0% |
| ! | GTTACAAATAATAGATCACT+AGG | + | chr3_2:8884117-8884136 | None:intergenic | 25.0% |
| !! | AATTCAATGAATCCAACTTT+TGG | + | chr3_2:8884205-8884224 | None:intergenic | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+AGG | + | chr3_2:8884322-8884341 | None:intergenic | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | + | chr3_2:8884417-8884436 | None:intergenic | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | + | chr3_2:8884418-8884437 | None:intergenic | 25.0% |
| ! | ATACAAGATTATAAAGTAGC+AGG | - | chr3_2:8884578-8884597 | Msa0394310:intron | 25.0% |
| ! | TTGAAAAGCAAACTAGAAAA+GGG | + | chr3_2:8884604-8884623 | None:intergenic | 25.0% |
| ! | TCATAAGTAGAATTTGAAAG+TGG | + | chr3_2:8884764-8884783 | None:intergenic | 25.0% |
| ! | TAATTTAATGCAGGTTTATC+AGG | - | chr3_2:8885191-8885210 | Msa0394310:intron | 25.0% |
| ! | TGAGAGGTAAAGAAAAATAT+AGG | - | chr3_2:8885223-8885242 | Msa0394310:intron | 25.0% |
| !! | GTTTTTCTTAAATCAGTGAA+TGG | - | chr3_2:8885490-8885509 | Msa0394310:CDS | 25.0% |
| GGTCAATTTCATTTGTATGA+TGG | - | chr3_2:8880948-8880967 | Msa0394310:CDS | 30.0% | |
| !!! | TGAATCGGAAACCTATTTTT+TGG | - | chr3_2:8881129-8881148 | Msa0394310:intron | 30.0% |
| ! | TGATTGGCTACAAAAAGTTT+AGG | - | chr3_2:8881303-8881322 | Msa0394310:intron | 30.0% |
| TGCTGTTATCTGAATGAATT+AGG | - | chr3_2:8881327-8881346 | Msa0394310:intron | 30.0% | |
| TGAATCCAGATTCATTAAGA+TGG | + | chr3_2:8881355-8881374 | None:intergenic | 30.0% | |
| AGGATTCATCTTAATGAATC+TGG | - | chr3_2:8881408-8881427 | Msa0394310:intron | 30.0% | |
| AGGTAATTGTAGATCGTAAA+TGG | - | chr3_2:8881865-8881884 | Msa0394310:intron | 30.0% | |
| AATTGTAGATCGTAAATGGA+AGG | - | chr3_2:8881869-8881888 | Msa0394310:intron | 30.0% | |
| AAAACGTAATTAGAGGGAAA+AGG | + | chr3_2:8882046-8882065 | None:intergenic | 30.0% | |
| CTACTATTGTAAGAAGTTAG+AGG | + | chr3_2:8882276-8882295 | None:intergenic | 30.0% | |
| !! | CTATGTTTTTATGTGGTGTT+TGG | - | chr3_2:8882414-8882433 | Msa0394310:intron | 30.0% |
| GGATGTATAGTCAGTATTAT+TGG | + | chr3_2:8882552-8882571 | None:intergenic | 30.0% | |
| ATGTATAACCTAACTCATGA+TGG | + | chr3_2:8882573-8882592 | None:intergenic | 30.0% | |
| TGTATGTGGAAATAGAAGTA+AGG | - | chr3_2:8882663-8882682 | Msa0394310:intron | 30.0% | |
| ATTGGAAACAACTTAAGACA+TGG | - | chr3_2:8883041-8883060 | Msa0394310:intron | 30.0% | |
| !! | AGCTATTAGCTGTTTTCATT+AGG | + | chr3_2:8883110-8883129 | None:intergenic | 30.0% |
| ATTGACATGAAATTTGATGG+CGG | - | chr3_2:8883370-8883389 | Msa0394310:intron | 30.0% | |
| TATATCGACCGAAATCAAAT+AGG | - | chr3_2:8883535-8883554 | Msa0394310:intron | 30.0% | |
| ! | TAACCACTCCTATTTGATTT+CGG | + | chr3_2:8883546-8883565 | None:intergenic | 30.0% |
| GAGCAATTAGTAGGAAAATT+GGG | - | chr3_2:8883626-8883645 | Msa0394310:intron | 30.0% | |
| AAAAAGAAAAAGGAATCTGC+AGG | + | chr3_2:8883742-8883761 | None:intergenic | 30.0% | |
| GTTTAATGACGATGAAATAG+AGG | - | chr3_2:8883788-8883807 | Msa0394310:intron | 30.0% | |
| ATGAAATAGAGGAAAAGGAA+AGG | - | chr3_2:8883799-8883818 | Msa0394310:intron | 30.0% | |
| GGAAAGGTTATTTGTATATC+TGG | - | chr3_2:8883815-8883834 | Msa0394310:intron | 30.0% | |
| AATAGTTTATTCAGGCACAT+AGG | - | chr3_2:8883838-8883857 | Msa0394310:intron | 30.0% | |
| ATAGGGACTAAAAATGCTAA+TGG | + | chr3_2:8884368-8884387 | None:intergenic | 30.0% | |
| GTTGAAAAGCAAACTAGAAA+AGG | + | chr3_2:8884605-8884624 | None:intergenic | 30.0% | |
| TTAAGAAGCCAGTAGAAAAA+TGG | + | chr3_2:8884672-8884691 | None:intergenic | 30.0% | |
| GACCTACATCAAGAAATATT+AGG | - | chr3_2:8884718-8884737 | Msa0394310:intron | 30.0% | |
| CTCCTAATATTTCTTGATGT+AGG | + | chr3_2:8884723-8884742 | None:intergenic | 30.0% | |
| CTACATCAAGAAATATTAGG+AGG | - | chr3_2:8884721-8884740 | Msa0394310:intron | 30.0% | |
| AAAATAGGGCTGTAATAGTA+AGG | - | chr3_2:8884809-8884828 | Msa0394310:intron | 30.0% | |
| GCATAATGATGAGATATGAA+TGG | + | chr3_2:8884908-8884927 | None:intergenic | 30.0% | |
| ATGTTGAAGTACAAATCCAA+CGG | - | chr3_2:8885252-8885271 | Msa0394310:intron | 30.0% | |
| ATCAAAGAACAAAAGATCTG+AGG | + | chr3_2:8885309-8885328 | None:intergenic | 30.0% | |
| ! | TAAGCTATCAGTTTTCTCAT+GGG | + | chr3_2:8885385-8885404 | None:intergenic | 30.0% |
| AGAAAACTGATAGCTTAGAA+GGG | - | chr3_2:8885388-8885407 | Msa0394310:intron | 30.0% | |
| GACATATCTGGTGTAAATTA+TGG | - | chr3_2:8885420-8885439 | Msa0394310:CDS | 30.0% | |
| ATATCTGGTGTAAATTATGG+CGG | - | chr3_2:8885423-8885442 | Msa0394310:CDS | 30.0% | |
| ! | ATTGAAGTTTTTCCCAGAAG+AGG | + | chr3_2:8880752-8880771 | None:intergenic | 35.0% |
| ! | CAATCTTTTCATGATTCGCT+TGG | - | chr3_2:8880768-8880787 | Msa0394310:three_prime_UTR | 35.0% |
| AACAAGCTGTGGTACAAAAA+GGG | + | chr3_2:8880844-8880863 | None:intergenic | 35.0% | |
| ! | AGTTTTCGATTTTGTGGGTT+AGG | - | chr3_2:8880927-8880946 | Msa0394310:CDS | 35.0% |
| CGATTCACAGTCCAAAAAAT+AGG | + | chr3_2:8881143-8881162 | None:intergenic | 35.0% | |
| AGGATCCATCTTAATGAATC+TGG | - | chr3_2:8881347-8881366 | Msa0394310:intron | 35.0% | |
| GAATCCTACACAAACACAAA+GGG | + | chr3_2:8881544-8881563 | None:intergenic | 35.0% | |
| TTGTGTAGGATTCCTACTAT+AGG | - | chr3_2:8881551-8881570 | Msa0394310:intron | 35.0% | |
| TGTGTAGGATTCCTACTATA+GGG | - | chr3_2:8881552-8881571 | Msa0394310:intron | 35.0% | |
| CATGTATGTTTCATGAGACA+AGG | + | chr3_2:8881685-8881704 | None:intergenic | 35.0% | |
| GTGATAAAGCAACGATAGAT+AGG | + | chr3_2:8881958-8881977 | None:intergenic | 35.0% | |
| GGATAGAGGAAATTATTGAG+TGG | + | chr3_2:8882086-8882105 | None:intergenic | 35.0% | |
| CAATAGCTTCACAACCAATA+CGG | - | chr3_2:8882130-8882149 | Msa0394310:intron | 35.0% | |
| TATCAATGATTCACCTGTTC+AGG | - | chr3_2:8882163-8882182 | Msa0394310:intron | 35.0% | |
| ATCAATGATTCACCTGTTCA+GGG | - | chr3_2:8882164-8882183 | Msa0394310:intron | 35.0% | |
| ACAATAGTAGTAGCAGAGAT+AGG | - | chr3_2:8882286-8882305 | Msa0394310:intron | 35.0% | |
| CAATAGTAGTAGCAGAGATA+GGG | - | chr3_2:8882287-8882306 | Msa0394310:intron | 35.0% | |
| AATAGTAGTAGCAGAGATAG+GGG | - | chr3_2:8882288-8882307 | Msa0394310:intron | 35.0% | |
| ! | ACATGTGATTTGTGATGGAA+TGG | - | chr3_2:8882379-8882398 | Msa0394310:intron | 35.0% |
| !! | TCGGGTTATAGTCTTATTGT+CGG | + | chr3_2:8882465-8882484 | None:intergenic | 35.0% |
| ATGTAACCTGTTAGCTCATT+CGG | + | chr3_2:8882484-8882503 | None:intergenic | 35.0% | |
| CTATACATCCATCATGAGTT+AGG | - | chr3_2:8882562-8882581 | Msa0394310:CDS | 35.0% | |
| ! | ATCCAAAGCTTTATCACACT+AGG | + | chr3_2:8882957-8882976 | None:intergenic | 35.0% |
| ATTTACTGCCATAAGCACAT+AGG | - | chr3_2:8882993-8883012 | Msa0394310:intron | 35.0% | |
| TTTACTGCCATAAGCACATA+GGG | - | chr3_2:8882994-8883013 | Msa0394310:intron | 35.0% | |
| TAGGTATCTTGGAGAGTTTA+AGG | + | chr3_2:8883091-8883110 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATTAGGTATCT+TGG | + | chr3_2:8883102-8883121 | None:intergenic | 35.0% |
| ACATAGATTAGGACTCTGTT+TGG | + | chr3_2:8883242-8883261 | None:intergenic | 35.0% | |
| AACAGAGTCCTAATCTATGT+TGG | - | chr3_2:8883242-8883261 | Msa0394310:intron | 35.0% | |
| ! | TCCTAATCTATGTTGGTAAG+TGG | - | chr3_2:8883249-8883268 | Msa0394310:intron | 35.0% |
| TCCACTTACCAACATAGATT+AGG | + | chr3_2:8883253-8883272 | None:intergenic | 35.0% | |
| !! | TGATGGCGGATATATAGTTA+CGG | - | chr3_2:8883384-8883403 | Msa0394310:intron | 35.0% |
| CATTGCTTGAAACATGATAC+AGG | + | chr3_2:8883441-8883460 | None:intergenic | 35.0% | |
| TGTTTCAAGCAATGCATCTA+AGG | - | chr3_2:8883447-8883466 | Msa0394310:intron | 35.0% | |
| GTTTCAAGCAATGCATCTAA+GGG | - | chr3_2:8883448-8883467 | Msa0394310:intron | 35.0% | |
| TCTAAGGGTTCTTCTATTGA+AGG | - | chr3_2:8883463-8883482 | Msa0394310:intron | 35.0% | |
| ! | TTTTTGCTGAGAATTATGCC+AGG | - | chr3_2:8883575-8883594 | Msa0394310:intron | 35.0% |
| GGAGCAATTAGTAGGAAAAT+TGG | - | chr3_2:8883625-8883644 | Msa0394310:intron | 35.0% | |
| AAGTCTATACCTGTCTTTCT+GGG | + | chr3_2:8883675-8883694 | None:intergenic | 35.0% | |
| CAATACTCTGACTACATCAA+CGG | + | chr3_2:8883708-8883727 | None:intergenic | 35.0% | |
| TGACGATGAAATAGAGGAAA+AGG | - | chr3_2:8883794-8883813 | Msa0394310:intron | 35.0% | |
| TCAGATTTGCAAACTATGCT+AGG | - | chr3_2:8883996-8884015 | Msa0394310:intron | 35.0% | |
| ATAGGGACTAAAAATGCTGA+TGG | + | chr3_2:8884336-8884355 | None:intergenic | 35.0% | |
| TTAGGGACCAAAAATGTTGA+TGG | + | chr3_2:8884400-8884419 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | - | chr3_2:8884408-8884427 | Msa0394310:intron | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | - | chr3_2:8884421-8884440 | Msa0394310:intron | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | - | chr3_2:8884422-8884441 | Msa0394310:intron | 35.0% | |
| ATATACACTGTAAAGCCTGT+GGG | + | chr3_2:8884641-8884660 | None:intergenic | 35.0% | |
| TATATACACTGTAAAGCCTG+TGG | + | chr3_2:8884642-8884661 | None:intergenic | 35.0% | |
| !! | AGACCTAACCATTTTTCTAC+TGG | - | chr3_2:8884661-8884680 | Msa0394310:intron | 35.0% |
| AAGCCAGTAGAAAAATGGTT+AGG | + | chr3_2:8884667-8884686 | None:intergenic | 35.0% | |
| !!! | TTTTCTACTGGCTTCTTAAG+AGG | - | chr3_2:8884673-8884692 | Msa0394310:intron | 35.0% |
| TTCCATATAAGAGTCCATTG+AGG | + | chr3_2:8885285-8885304 | None:intergenic | 35.0% | |
| ! | AAGCTATCAGTTTTCTCATG+GGG | + | chr3_2:8885384-8885403 | None:intergenic | 35.0% |
| ! | CTAAGCTATCAGTTTTCTCA+TGG | + | chr3_2:8885386-8885405 | None:intergenic | 35.0% |
| GAGAAAACTGATAGCTTAGA+AGG | - | chr3_2:8885387-8885406 | Msa0394310:intron | 35.0% | |
| !!! | GCGGATTTTGGTTTTGATTC+TGG | + | chr3_2:8880659-8880678 | None:intergenic | 40.0% |
| GAACAAGCTGTGGTACAAAA+AGG | + | chr3_2:8880845-8880864 | None:intergenic | 40.0% | |
| GGATTCATGTCTTGTGAAAC+AGG | - | chr3_2:8881368-8881387 | Msa0394310:intron | 40.0% | |
| ! | ATCGCTGTGTGTAGCATTTT+TGG | + | chr3_2:8881442-8881461 | None:intergenic | 40.0% |
| TTTGCCCTTTGTGTTTGTGT+AGG | - | chr3_2:8881537-8881556 | Msa0394310:intron | 40.0% | |
| GGAATCCTACACAAACACAA+AGG | + | chr3_2:8881545-8881564 | None:intergenic | 40.0% | |
| GTGTAGGATTCCTACTATAG+GGG | - | chr3_2:8881553-8881572 | Msa0394310:intron | 40.0% | |
| TGTAGGATTCCTACTATAGG+GGG | - | chr3_2:8881554-8881573 | Msa0394310:intron | 40.0% | |
| ! | GAGATGTTACTTCAACGAAG+AGG | + | chr3_2:8881601-8881620 | None:intergenic | 40.0% |
| TTCGTTGAAGTAACATCTCG+TGG | - | chr3_2:8881602-8881621 | Msa0394310:intron | 40.0% | |
| ! | ATCTCGTGGTGGTATTGAAA+AGG | - | chr3_2:8881616-8881635 | Msa0394310:intron | 40.0% |
| TGTAGATCGTAAATGGAAGG+AGG | - | chr3_2:8881872-8881891 | Msa0394310:intron | 40.0% | |
| !! | ATGCGCTTGTTATGGTATCT+CGG | + | chr3_2:8881917-8881936 | None:intergenic | 40.0% |
| ! | CATGAATGATGCGCTTGTTA+TGG | + | chr3_2:8881925-8881944 | None:intergenic | 40.0% |
| CATAACAAGCGCATCATTCA+TGG | - | chr3_2:8881923-8881942 | Msa0394310:intron | 40.0% | |
| AGGTAGTATCTTCACTAACC+AGG | + | chr3_2:8882026-8882045 | None:intergenic | 40.0% | |
| !! | CGTATTGGTTGTGAAGCTAT+TGG | + | chr3_2:8882132-8882151 | None:intergenic | 40.0% |
| !! | TTCATTGACTTACCCTGAAC+AGG | + | chr3_2:8882179-8882198 | None:intergenic | 40.0% |
| TGTTCCTCTGACATTTGTCA+TGG | - | chr3_2:8882325-8882344 | Msa0394310:intron | 40.0% | |
| TGATCCATGACAAATGTCAG+AGG | + | chr3_2:8882332-8882351 | None:intergenic | 40.0% | |
| TATAACCCGAATGAGCTAAC+AGG | - | chr3_2:8882475-8882494 | Msa0394310:intron | 40.0% | |
| TGTAACCTGTTAGCTCATTC+GGG | + | chr3_2:8882483-8882502 | None:intergenic | 40.0% | |
| GAATGAGCTAACAGGTTACA+TGG | - | chr3_2:8882483-8882502 | Msa0394310:intron | 40.0% | |
| ! | AAGCTTTATCACACTAGGTG+AGG | + | chr3_2:8882952-8882971 | None:intergenic | 40.0% |
| CACCTAGTGTGATAAAGCTT+TGG | - | chr3_2:8882952-8882971 | Msa0394310:intron | 40.0% | |
| TTACTGCCATAAGCACATAG+GGG | - | chr3_2:8882995-8883014 | Msa0394310:intron | 40.0% | |
| TTGGGAGAGCTTATGGAAAT+TGG | - | chr3_2:8883023-8883042 | Msa0394310:intron | 40.0% | |
| ATATATAGTTACGGTGGACC+TGG | - | chr3_2:8883393-8883412 | Msa0394310:intron | 40.0% | |
| TATATAGTTACGGTGGACCT+GGG | - | chr3_2:8883394-8883413 | Msa0394310:intron | 40.0% | |
| TTCCTACTAATTGCTCCTTG+TGG | + | chr3_2:8883622-8883641 | None:intergenic | 40.0% | |
| CAAGTCTATACCTGTCTTTC+TGG | + | chr3_2:8883676-8883695 | None:intergenic | 40.0% | |
| GTAACTGACATATTTGCCTC+TGG | - | chr3_2:8883762-8883781 | Msa0394310:intron | 40.0% | |
| ATCGTCATTAAACAAGCCAG+AGG | + | chr3_2:8883781-8883800 | None:intergenic | 40.0% | |
| !!! | CTACCATTTTTTGCTATCCG+CGG | - | chr3_2:8884076-8884095 | Msa0394310:CDS | 40.0% |
| TCCTTGGAAAAGCCAAAAGT+TGG | - | chr3_2:8884190-8884209 | Msa0394310:intron | 40.0% | |
| !!! | TCCAACTTTTGGCTTTTCCA+AGG | + | chr3_2:8884194-8884213 | None:intergenic | 40.0% |
| TTGTTGTCAGAGTGTGTGAA+AGG | - | chr3_2:8884539-8884558 | Msa0394310:intron | 40.0% | |
| GTGTGAAAGGAAGGATGTTA+AGG | - | chr3_2:8884552-8884571 | Msa0394310:intron | 40.0% | |
| !! | GTCGTAGACTATTTCTACAG+GGG | + | chr3_2:8884701-8884720 | None:intergenic | 40.0% |
| !! | GGTCGTAGACTATTTCTACA+GGG | + | chr3_2:8884702-8884721 | None:intergenic | 40.0% |
| !! | AGGTCGTAGACTATTTCTAC+AGG | + | chr3_2:8884703-8884722 | None:intergenic | 40.0% |
| GAAACTAACATCGCACAAAG+TGG | + | chr3_2:8884930-8884949 | None:intergenic | 40.0% | |
| TCTATGTGGTGAGATGTGAT+TGG | - | chr3_2:8884969-8884988 | Msa0394310:intron | 40.0% | |
| TGCAGGTTTATCAGGAGAAA+AGG | - | chr3_2:8885199-8885218 | Msa0394310:intron | 40.0% | |
| TATCAGGAGAAAAGGTTGAG+AGG | - | chr3_2:8885207-8885226 | Msa0394310:intron | 40.0% | |
| ! | CTCCTCAATGGACTCTTATA+TGG | - | chr3_2:8885280-8885299 | Msa0394310:intron | 40.0% |
| ! | GGGTAGCTTTTTGACATATC+TGG | - | chr3_2:8885408-8885427 | Msa0394310:intron | 40.0% |
| TTTGTGAGTTCAGTCTCACG+CGG | + | chr3_2:8880678-8880697 | None:intergenic | 45.0% | |
| AACAAGGTCAGAGTAGAGAG+CGG | + | chr3_2:8880718-8880737 | None:intergenic | 45.0% | |
| AGAGGTTAGCATCACGAACA+AGG | + | chr3_2:8880734-8880753 | None:intergenic | 45.0% | |
| TTCGTGATGCTAACCTCTTC+TGG | - | chr3_2:8880736-8880755 | Msa0394310:three_prime_UTR | 45.0% | |
| TCGTGATGCTAACCTCTTCT+GGG | - | chr3_2:8880737-8880756 | Msa0394310:three_prime_UTR | 45.0% | |
| CTAGATCGATGAACAAGCTG+TGG | + | chr3_2:8880855-8880874 | None:intergenic | 45.0% | |
| GTTGAAGTAACATCTCGTGG+TGG | - | chr3_2:8881605-8881624 | Msa0394310:intron | 45.0% | |
| !! | CTTCACTAACCAGGTGTTGA+GGG | + | chr3_2:8882017-8882036 | None:intergenic | 45.0% |
| ! | TCTTCACTAACCAGGTGTTG+AGG | + | chr3_2:8882018-8882037 | None:intergenic | 45.0% |
| ! | CACTCAAAGCATCTGGATAG+AGG | + | chr3_2:8882100-8882119 | None:intergenic | 45.0% |
| ! | CTCTATCCAGATGCTTTGAG+TGG | - | chr3_2:8882098-8882117 | Msa0394310:intron | 45.0% |
| ! | ACGTTTCCACTCAAAGCATC+TGG | + | chr3_2:8882107-8882126 | None:intergenic | 45.0% |
| AGCTTCACAACCAATACGGA+CGG | - | chr3_2:8882134-8882153 | Msa0394310:intron | 45.0% | |
| ! | CGCTGACATGTGATTTGTGA+TGG | - | chr3_2:8882374-8882393 | Msa0394310:intron | 45.0% |
| CCAGCTACTTAGATCAAACG+AGG | + | chr3_2:8882929-8882948 | None:intergenic | 45.0% | |
| CCTCGTTTGATCTAAGTAGC+TGG | - | chr3_2:8882926-8882945 | Msa0394310:intron | 45.0% | |
| AACAGTCCCCTATGTGCTTA+TGG | + | chr3_2:8883004-8883023 | None:intergenic | 45.0% | |
| TAAGCACATAGGGGACTGTT+TGG | - | chr3_2:8883004-8883023 | Msa0394310:intron | 45.0% | |
| AAGCACATAGGGGACTGTTT+GGG | - | chr3_2:8883005-8883024 | Msa0394310:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | + | chr3_2:8883328-8883347 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+TGG | - | chr3_2:8883328-8883347 | Msa0394310:intron | 45.0% | |
| ! | TGGCGGATATATAGTTACGG+TGG | - | chr3_2:8883387-8883406 | Msa0394310:intron | 45.0% |
| CGACCGAAATCAAATAGGAG+TGG | - | chr3_2:8883540-8883559 | Msa0394310:intron | 45.0% | |
| GTAGGAAAATTGGGTTTGCG+TGG | - | chr3_2:8883635-8883654 | Msa0394310:intron | 45.0% | |
| CAACCGCGGATAGCAAAAAA+TGG | + | chr3_2:8884082-8884101 | None:intergenic | 45.0% | |
| !!! | CATTTTTTGCTATCCGCGGT+TGG | - | chr3_2:8884080-8884099 | Msa0394310:CDS | 45.0% |
| GTTTCGCAAATGACAGGCTA+AGG | + | chr3_2:8884159-8884178 | None:intergenic | 45.0% | |
| AAGGCAGTTTCGCAAATGAC+AGG | + | chr3_2:8884165-8884184 | None:intergenic | 45.0% | |
| GAAACTGCCTTGATGTTCCT+TGG | - | chr3_2:8884174-8884193 | Msa0394310:intron | 45.0% | |
| ! | GGCTTTTCCAAGGAACATCA+AGG | + | chr3_2:8884184-8884203 | None:intergenic | 45.0% |
| TGTCAGAGTGTGTGAAAGGA+AGG | - | chr3_2:8884543-8884562 | Msa0394310:intron | 45.0% | |
| ! | ACATTTGAGATTGCTCCCAC+AGG | - | chr3_2:8884623-8884642 | Msa0394310:CDS | 45.0% |
| ! | GTTCAGTCTCACGCGGATTT+TGG | + | chr3_2:8880671-8880690 | None:intergenic | 50.0% |
| AGTGGCTTACCCCCTATAGT+AGG | + | chr3_2:8881566-8881585 | None:intergenic | 50.0% | |
| AAGAGGTGATGCAGGTCTAG+TGG | + | chr3_2:8881584-8881603 | None:intergenic | 50.0% | |
| CTTCAACGAAGAGGTGATGC+AGG | + | chr3_2:8881592-8881611 | None:intergenic | 50.0% | |
| !! | ACTAACCAGGTGTTGAGGGA+GGG | + | chr3_2:8882013-8882032 | None:intergenic | 50.0% |
| GGACTGTTTGGGAGAGCTTA+TGG | - | chr3_2:8883016-8883035 | Msa0394310:intron | 50.0% | |
| GAAGAACCAAGTGTCTGTGC+TGG | + | chr3_2:8883337-8883356 | None:intergenic | 50.0% | |
| ! | ACACTTGGTTCTTCAGTGCG+TGG | - | chr3_2:8883343-8883362 | Msa0394310:intron | 50.0% |
| CTTTCAGCTGTTCAGAACCC+AGG | + | chr3_2:8883414-8883433 | None:intergenic | 50.0% | |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | chr3_2:8883412-8883431 | Msa0394310:intron | 50.0% |
| ! | GCAAAATGAGGGCTTTAGCC+TGG | + | chr3_2:8883596-8883615 | None:intergenic | 50.0% |
| ! | GGCTAAAGCCCTCATTTTGC+AGG | - | chr3_2:8883596-8883615 | Msa0394310:intron | 50.0% |
| CCTTGTGGCCTGCAAAATGA+GGG | + | chr3_2:8883607-8883626 | None:intergenic | 50.0% | |
| TCCTTGTGGCCTGCAAAATG+AGG | + | chr3_2:8883608-8883627 | None:intergenic | 50.0% | |
| GGCCACAAGGAGCAATTAGT+AGG | - | chr3_2:8883617-8883636 | Msa0394310:intron | 50.0% | |
| GGAAAATTGGGTTTGCGTGG+AGG | - | chr3_2:8883638-8883657 | Msa0394310:intron | 50.0% | |
| TCTGACAGACCCAGAAAGAC+AGG | - | chr3_2:8883663-8883682 | Msa0394310:intron | 50.0% | |
| TCAGAGTAGAGAGCGGTTGG+AGG | + | chr3_2:8880711-8880730 | None:intergenic | 55.0% | |
| AGGTCAGAGTAGAGAGCGGT+TGG | + | chr3_2:8880714-8880733 | None:intergenic | 55.0% | |
| !! | CACTAACCAGGTGTTGAGGG+AGG | + | chr3_2:8882014-8882033 | None:intergenic | 55.0% |
| GATAGCAGCACCGTCCGTAT+TGG | + | chr3_2:8882147-8882166 | None:intergenic | 55.0% | |
| ! | CCCTCATTTTGCAGGCCACA+AGG | - | chr3_2:8883604-8883623 | Msa0394310:intron | 55.0% |
| GGAATCAGTGTTGCCAACCG+CGG | + | chr3_2:8884096-8884115 | None:intergenic | 55.0% | |
| CCATTGAGGAGCTGAACCGT+TGG | + | chr3_2:8885271-8885290 | None:intergenic | 55.0% | |
| CCAACGGTTCAGCTCCTCAA+TGG | - | chr3_2:8885268-8885287 | Msa0394310:intron | 55.0% | |
| GAGCGGTTGGAGGAGGACAA+AGG | + | chr3_2:8880701-8880720 | None:intergenic | 60.0% | |
| GAGTAGAGAGCGGTTGGAGG+AGG | + | chr3_2:8880708-8880727 | None:intergenic | 60.0% | |
| CAAGTCCCTCCCTCAACACC+TGG | - | chr3_2:8882005-8882024 | Msa0394310:intron | 60.0% | |
| GCTATTGCGCTGCTGCGTAG+CGG | - | chr3_2:8884041-8884060 | Msa0394310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 8880645 | 8885577 | 8880645 | ID=Msa0394310;Name=Msa0394310 |
| chr3_2 | mRNA | 8880645 | 8885577 | 8880645 | ID=Msa0394310-mRNA-1;Parent=Msa0394310;Name=Msa0394310-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.66|0.71|1|1|1|7|233|302 |
| chr3_2 | exon | 8880645 | 8881018 | 8880645 | ID=Msa0394310-mRNA-1:exon:2302;Parent=Msa0394310-mRNA-1 |
| chr3_2 | exon | 8882538 | 8882665 | 8882538 | ID=Msa0394310-mRNA-1:exon:2301;Parent=Msa0394310-mRNA-1 |
| chr3_2 | exon | 8882738 | 8882902 | 8882738 | ID=Msa0394310-mRNA-1:exon:2300;Parent=Msa0394310-mRNA-1 |
| chr3_2 | exon | 8884037 | 8884114 | 8884037 | ID=Msa0394310-mRNA-1:exon:2299;Parent=Msa0394310-mRNA-1 |
| chr3_2 | exon | 8884196 | 8884355 | 8884196 | ID=Msa0394310-mRNA-1:exon:2298;Parent=Msa0394310-mRNA-1 |
| chr3_2 | exon | 8884585 | 8884663 | 8884585 | ID=Msa0394310-mRNA-1:exon:2297;Parent=Msa0394310-mRNA-1 |
| chr3_2 | exon | 8885420 | 8885577 | 8885420 | ID=Msa0394310-mRNA-1:exon:2296;Parent=Msa0394310-mRNA-1 |
| chr3_2 | CDS | 8885420 | 8885577 | 8885420 | ID=Msa0394310-mRNA-1:cds;Parent=Msa0394310-mRNA-1 |
| chr3_2 | CDS | 8884585 | 8884663 | 8884585 | ID=Msa0394310-mRNA-1:cds;Parent=Msa0394310-mRNA-1 |
| chr3_2 | CDS | 8884196 | 8884355 | 8884196 | ID=Msa0394310-mRNA-1:cds;Parent=Msa0394310-mRNA-1 |
| chr3_2 | CDS | 8884037 | 8884114 | 8884037 | ID=Msa0394310-mRNA-1:cds;Parent=Msa0394310-mRNA-1 |
| chr3_2 | CDS | 8882738 | 8882902 | 8882738 | ID=Msa0394310-mRNA-1:cds;Parent=Msa0394310-mRNA-1 |
| chr3_2 | CDS | 8882538 | 8882665 | 8882538 | ID=Msa0394310-mRNA-1:cds;Parent=Msa0394310-mRNA-1 |
| chr3_2 | CDS | 8880878 | 8881018 | 8880878 | ID=Msa0394310-mRNA-1:cds;Parent=Msa0394310-mRNA-1 |
| chr3_2 | three_prime_UTR | 8880645 | 8880877 | 8880645 | ID=Msa0394310-mRNA-1:three_prime_utr;Parent=Msa0394310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
