AlfalfaGEDB | Msa0395340

M. sativa cultivar zhongmu-4 / Msa0395340

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008285 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009739 GO:0009740 GO:0009751 GO:0009755 GO:0009787 GO:0009789 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042127 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045926 GO:0045935 GO:0046677 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905957 GO:1905959 GO:1990019 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395340	XP_013458881.1	96.367	523	16	1	1	523	1	520	0.0	1043

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395340	sp\|Q9FR97\|MYB65_ARATH	40.816	490	245	13	36	498	40	511	1.35e-97	309

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395340	A0A072UV52	96.367	523	16	1	1	523	1	520	0.0	1043

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TFs/TRs:

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Gene ID	Type	Classification
Msa0395340	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395340	MtrunA17_Chr3g0080861	96.367	523	16	1	1	523	1	520	0.0	1043
Msa0395340	MtrunA17_Chr8g0354661	55.556	540	206	8	1	519	2	528	0.0	553
Msa0395340	MtrunA17_Chr3g0099131	78.261	115	25	0	37	151	41	155	2.55e-60	207
Msa0395340	MtrunA17_Chr2g0322521	70.866	127	37	0	31	157	23	149	1.72e-58	199
Msa0395340	MtrunA17_Chr1g0154031	54.491	167	69	2	37	203	76	235	4.53e-55	190
Msa0395340	MtrunA17_Chr1g0192411	59.664	119	48	0	35	153	10	128	6.86e-46	166
Msa0395340	MtrunA17_Chr5g0410961	61.321	106	41	0	35	140	10	115	4.28e-45	162
Msa0395340	MtrunA17_Chr1g0203411	64.220	109	39	0	37	145	12	120	7.67e-45	159
Msa0395340	MtrunA17_Chr2g0281071	62.500	104	39	0	37	140	13	116	2.89e-44	159
Msa0395340	MtrunA17_Chr5g0395281	62.500	104	39	0	37	140	12	115	7.67e-44	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395340	AT3G11440.3	40.816	490	245	13	36	498	40	511	1.38e-98	309
Msa0395340	AT3G11440.4	40.816	490	245	13	36	498	40	511	1.38e-98	309
Msa0395340	AT3G11440.1	40.816	490	245	13	36	498	40	511	1.38e-98	309
Msa0395340	AT5G06100.5	40.206	485	234	12	34	498	29	477	2.88e-93	294
Msa0395340	AT5G06100.2	40.206	485	234	12	34	498	29	477	2.88e-93	294
Msa0395340	AT5G06100.3	40.206	485	234	12	34	498	29	477	2.88e-93	294
Msa0395340	AT5G06100.4	40.206	485	234	12	34	498	29	477	2.88e-93	294
Msa0395340	AT3G11440.2	45.093	377	179	9	36	387	40	413	5.18e-91	286
Msa0395340	AT5G06100.1	44.162	394	194	10	34	407	29	416	2.62e-90	284
Msa0395340	AT5G55020.1	79.339	121	25	0	32	152	21	141	7.69e-66	222

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Find 172 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGGCCAAGGCACTGG+TGG	0.614540	3_2:+11815643	Msa0395340:CDS
AAACCGGCTTTGGTGGCTGG+GGG	0.376163	3_2:+11816106	Msa0395340:CDS
AAAGACATTGTTGATGGCAC+AGG	0.499006	3_2:-11815853	None:intergenic
AAAGAGAGAAAATGGTACTT+AGG	0.421471	3_2:-11812015	None:intergenic
AAAGGGAGTAAACATGGCCA+AGG	0.613145	3_2:+11815634	Msa0395340:CDS
AAATAATAGTGGCACGCTCG+AGG	0.597636	3_2:+11816224	Msa0395340:CDS
AACCGGCTTTGGTGGCTGGG+GGG	0.436055	3_2:+11816107	Msa0395340:CDS
AACGCTGTTCAGAAGCATTC+GGG	0.385357	3_2:+11813615	Msa0395340:CDS
AACGGAGGAAGTGTTAATGG+TGG	0.584165	3_2:+11813507	Msa0395340:CDS
AACTTCACAGCCTTGGATGT+CGG	0.525914	3_2:-11816057	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAGAAAATGGTACTT+AGG	-	chr3_2:11812018-11812037	None:intergenic	30.0%
CATATTGGATGAAACGAAAA+TGG	-	chr3_2:11812177-11812196	None:intergenic	30.0%
TAATTATGCCTTACCAAATC+AGG	-	chr3_2:11812998-11813017	None:intergenic	30.0%
TTGATGAAATCCTGTAAATC+AGG	-	chr3_2:11813075-11813094	None:intergenic	30.0%
AACTCTTTCATCTTAAAGGA+TGG	+	chr3_2:11813152-11813171	Msa0395340:intron	30.0%
GGACAAATTAAACAGAAAAC+AGG	-	chr3_2:11813954-11813973	None:intergenic	30.0%
TCACATCATTCTTGAATTTG+TGG	+	chr3_2:11814632-11814651	Msa0395340:intron	30.0%
TTTGAAAAACCAAAATGTCC+AGG	-	chr3_2:11815379-11815398	None:intergenic	30.0%
TAAAGAACTATTGGAATACC+CGG	+	chr3_2:11815548-11815567	Msa0395340:CDS	30.0%
TGACAATTTGAAGGAAAATC+AGG	+	chr3_2:11815738-11815757	Msa0395340:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	11811925	11817233	11811925	ID=Msa0395340;Name=Msa0395340
chr3_2	mRNA	11811925	11817233	11811925	ID=Msa0395340-mRNA-1;Parent=Msa0395340;Name=Msa0395340-mRNA-1;_AED=0.23;_eAED=0.23;_QI=397\|1\|1\|1\|0.5\|0.4\|5\|215\|523
chr3_2	exon	11811925	11812155	11811925	ID=Msa0395340-mRNA-1:exon:2783;Parent=Msa0395340-mRNA-1
chr3_2	exon	11812387	11812535	11812387	ID=Msa0395340-mRNA-1:exon:2784;Parent=Msa0395340-mRNA-1
chr3_2	exon	11813412	11813788	11813412	ID=Msa0395340-mRNA-1:exon:2785;Parent=Msa0395340-mRNA-1
chr3_2	exon	11815523	11816495	11815523	ID=Msa0395340-mRNA-1:exon:2786;Parent=Msa0395340-mRNA-1
chr3_2	exon	11816780	11817233	11816780	ID=Msa0395340-mRNA-1:exon:2787;Parent=Msa0395340-mRNA-1
chr3_2	five_prime_UTR	11811925	11812155	11811925	ID=Msa0395340-mRNA-1:five_prime_utr;Parent=Msa0395340-mRNA-1
chr3_2	five_prime_UTR	11812387	11812535	11812387	ID=Msa0395340-mRNA-1:five_prime_utr;Parent=Msa0395340-mRNA-1
chr3_2	five_prime_UTR	11813412	11813428	11813412	ID=Msa0395340-mRNA-1:five_prime_utr;Parent=Msa0395340-mRNA-1
chr3_2	CDS	11813429	11813788	11813429	ID=Msa0395340-mRNA-1:cds;Parent=Msa0395340-mRNA-1
chr3_2	CDS	11815523	11816495	11815523	ID=Msa0395340-mRNA-1:cds;Parent=Msa0395340-mRNA-1
chr3_2	CDS	11816780	11817018	11816780	ID=Msa0395340-mRNA-1:cds;Parent=Msa0395340-mRNA-1
chr3_2	three_prime_UTR	11817019	11817233	11817019	ID=Msa0395340-mRNA-1:three_prime_utr;Parent=Msa0395340-mRNA-1

Gene Sequence

>Msa0395340

ATGAGTCGAGTGAAAAATGAGATTGAAGATGATATGCTCTGCAATGATCAAACACGGTCACGGTCGAATGGTGAGGGTAACGGAGGAAGTGTTAATGGTGGAGTTGTTCTGAAGAAAGGGCCGTGGACATCTGCAGAAGACGCTATTTTGGTTGACTACGTCAGGAAGCATGGAGAAGGCAACTGGAACGCTGTTCAGAAGCATTCGGGCTTGTCTCGTTGTGGAAAAAGTTGCCGTCTTAGATGGGCAAATCACTTAAGGCCAAATTTAAAGAAAGGATCATTTACTGCTGATGAGGAGCATTTAATTGCTCAACTTCATTCCGAAATGGGAAACAGATGGGCACGTATGGCTGCGCACTTGCCTGGTCGTACAGATAATGAAATAAAGAACTATTGGAATACCCGGACCAAGAGGCGTCATCGGGCTGGCTTGCCACTCTATCCTCCAGAAGTTCGTTTGCGAACAATGAAAGGGAGTAAACATGGCCAAGGCACTGGTGGAATCAATGATGGTGATAGAGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATGCATGATGCAATATTTGACAATTTGAAGGAAAATCAGGGAATCTTGCCTATTACAATTTTGCCCGAGAATCCTGATATTTCTGCTAATAGCATTATGCGAAACAGTCTTGATTCTCCTCCATATTGCAATCCTGTGCCATCAACAATGTCTTTTCTTGGTTCAAGTGGAACGAACAAGAATTGGTTTTATCCATTTTACCATGTTCAGGATCATAGTTCTGATAAGACTGCACAATCTTTTGGATTGCATTCTCCTCTTGATCCTGGTCTCCCCTCACATAACTCGATGTATTACCGCCATTCCGTATCAAATGGCAATTCCTCTACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTGGCTGGGGGGGTAACTTTCCCCCATCTCCACTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGGTGCGCAAGAGTCCGGTTGTTCTTCACCAAATAATAGTGGCACGCTCGAGGCCATTATTTATCAGAAGAAGACACTTCCAAATTCAAATAACAATTGTTCTGACAAGAGTTCACATTCATCTACTACAACTCCTGTTGACGGAGGTGAGAGTTCTGCTTTGAACATGAATGAGACAGAATGGGATGACTACACTGACCCTGCATCTCCCTTTGGTGCAACCTCAATCCTGAATGAGTGCCATGCTGTTAACACCAATACAAACTCATGGGATAAATTGATACCTGCTCAGAACTTTAGTGGCAGCAATGTTAAATATGAGCCTGTTGACCAAGTTTCTACCCCAAACAGTGAAAACCGATCTTTGTCTATGTTGAACATCACTTGGCCAGATGTCATGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCACGAGAAGAACATGACCGAGGCTAGTGACAACCCAACAGATTATAAGCATGTGGCTGGTGGGACTTATTCTTCAAGTACAGGGGGTCGCTTTATGCACATGGCATGA

Protein sequence

>Msa0395340

MSRVKNEIEDDMLCNDQTRSRSNGEGNGGSVNGGVVLKKGPWTSAEDAILVDYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTADEEHLIAQLHSEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRHRAGLPLYPPEVRLRTMKGSKHGQGTGGINDGDRGHHDFLPKNNYEMHDAIFDNLKENQGILPITILPENPDISANSIMRNSLDSPPYCNPVPSTMSFLGSSGTNKNWFYPFYHVQDHSSDKTAQSFGLHSPLDPGLPSHNSMYYRHSVSNGNSSTSKPTSKAVKLELPSLQYPETGFGGWGGNFPPSPLNESVDVFNQSPLPHGAQESGCSSPNNSGTLEAIIYQKKTLPNSNNNCSDKSSHSSTTTPVDGGESSALNMNETEWDDYTDPASPFGATSILNECHAVNTNTNSWDKLIPAQNFSGSNVKYEPVDQVSTPNSENRSLSMLNITWPDVMLASDWHEQCYGHEKNMTEASDNPTDYKHVAGGTYSSSTGGRFMHMA*