Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395460 | QDW65496.1 | 100.000 | 292 | 0 | 0 | 1 | 292 | 1 | 292 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395460 | sp|Q2YDP3|NC2A_BOVIN | 49.558 | 113 | 55 | 2 | 2 | 114 | 5 | 115 | 2.54e-30 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395460 | A0A5B8GTQ9 | 100.000 | 292 | 0 | 0 | 1 | 292 | 1 | 292 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0395460 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395460 | MtrunA17_Chr3g0081161 | 98.288 | 292 | 5 | 0 | 1 | 292 | 1 | 292 | 0.0 | 594 |
| Msa0395460 | MtrunA17_Chr8g0354151 | 68.919 | 296 | 74 | 7 | 1 | 280 | 1 | 294 | 6.01e-124 | 356 |
| Msa0395460 | MtrunA17_Chr5g0441241 | 51.071 | 280 | 112 | 8 | 18 | 279 | 1 | 273 | 1.65e-54 | 178 |
| Msa0395460 | MtrunA17_Chr5g0420401 | 84.270 | 89 | 14 | 0 | 171 | 259 | 51 | 139 | 1.29e-47 | 156 |
| Msa0395460 | MtrunA17_Chr2g0288481 | 40.449 | 89 | 50 | 1 | 1 | 86 | 75 | 163 | 2.16e-12 | 65.5 |
| Msa0395460 | MtrunA17_Chr3g0132191 | 40.506 | 79 | 47 | 0 | 8 | 86 | 55 | 133 | 5.76e-12 | 63.9 |
| Msa0395460 | MtrunA17_Chr1g0191681 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 6.06e-12 | 64.3 |
| Msa0395460 | MtrunA17_Chr7g0272991 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 8.83e-12 | 63.9 |
| Msa0395460 | MtrunA17_Chr2g0310741 | 41.026 | 78 | 46 | 0 | 9 | 86 | 104 | 181 | 5.93e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395460 | AT3G12480.1 | 52.041 | 294 | 115 | 10 | 1 | 280 | 1 | 282 | 3.46e-78 | 239 |
| Msa0395460 | AT5G19490.1 | 44.444 | 297 | 120 | 11 | 1 | 290 | 1 | 259 | 1.03e-52 | 173 |
| Msa0395460 | AT1G54830.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.94e-12 | 65.1 |
| Msa0395460 | AT1G54830.3 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.94e-12 | 65.1 |
| Msa0395460 | AT1G54830.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 2.94e-12 | 65.1 |
| Msa0395460 | AT1G08970.3 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.52e-12 | 64.3 |
| Msa0395460 | AT1G08970.4 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.52e-12 | 64.3 |
| Msa0395460 | AT1G08970.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.52e-12 | 64.3 |
| Msa0395460 | AT1G08970.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 7.52e-12 | 64.3 |
| Msa0395460 | AT5G63470.2 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 8.31e-12 | 64.3 |
| Msa0395460 | AT5G63470.1 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 8.31e-12 | 64.3 |
| Msa0395460 | AT3G48590.1 | 40.506 | 79 | 47 | 0 | 8 | 86 | 65 | 143 | 9.21e-12 | 63.9 |
| Msa0395460 | AT1G56170.1 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 2.03e-11 | 62.4 |
| Msa0395460 | AT1G56170.2 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 2.03e-11 | 62.4 |
Find 111 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGTACATGATTTACTTCT+TGG | 0.159971 | 3_2:-12109853 | Msa0395460:three_prime_UTR |
| TCTTCTTCATGGCATCAAAA+TGG | 0.222835 | 3_2:+12114291 | None:intergenic |
| CCATTATCTATTGCCATACT+TGG | 0.281670 | 3_2:+12110359 | None:intergenic |
| TTGCAGCAGGTTCAGGCAAT+GGG | 0.296714 | 3_2:+12110195 | None:intergenic |
| TTTCATGTAAGTTGGCATTC+AGG | 0.299510 | 3_2:+12110261 | None:intergenic |
| AGGGGAAGAGGAAGGGGTAG+AGG | 0.303468 | 3_2:-12110491 | Msa0395460:CDS |
| TTACAAATGCAATGCATTCA+TGG | 0.332233 | 3_2:+12111512 | None:intergenic |
| GGTATCAAGCTTCTTCTTCA+TGG | 0.333154 | 3_2:+12114280 | None:intergenic |
| TTGCAGCAAACCTTGGTAAT+AGG | 0.333492 | 3_2:-12110094 | Msa0395460:CDS |
| GATTTACTTCTTGGTAAAGT+TGG | 0.341511 | 3_2:-12109844 | Msa0395460:three_prime_UTR |
| GAGTCATGATTTCCACCTTA+AGG | 0.342418 | 3_2:+12110023 | None:intergenic |
| CCTACGAAGTGTCGATTTGC+CGG | 0.344437 | 3_2:+12114416 | None:intergenic |
| GGACATGGCCATTCTGAGGC+TGG | 0.349144 | 3_2:-12110920 | Msa0395460:CDS |
| TGGACTTCGAACCTTCTCTT+TGG | 0.350657 | 3_2:+12110878 | None:intergenic |
| ATCTATTGCCATACTTGGAT+TGG | 0.365176 | 3_2:+12110364 | None:intergenic |
| TCTATTGCCATACTTGGATT+GGG | 0.367608 | 3_2:+12110365 | None:intergenic |
| AGAGGCTAAGCGGAGTAAAA+TGG | 0.373594 | 3_2:-12110740 | Msa0395460:intron |
| TAAATGGATATTGTTGTTGT+AGG | 0.378021 | 3_2:-12109890 | Msa0395460:three_prime_UTR |
| TGGCATTCAGGTCAATGTTT+CGG | 0.380240 | 3_2:+12110273 | None:intergenic |
| ACTCGTACGAACGCATATTC+CGG | 0.387293 | 3_2:-12114435 | Msa0395460:five_prime_UTR |
| CCAAGTATGGCAATAGATAA+TGG | 0.389197 | 3_2:-12110359 | Msa0395460:CDS |
| CTTCTTCATGGCATCAAAAT+GGG | 0.393870 | 3_2:+12114292 | None:intergenic |
| TCTGTTGTTGCAGCAGGTTC+AGG | 0.395311 | 3_2:+12110188 | None:intergenic |
| GACATGGCCATTCTGAGGCT+GGG | 0.396129 | 3_2:-12110919 | Msa0395460:CDS |
| ATTTACTTCTTGGTAAAGTT+GGG | 0.399093 | 3_2:-12109843 | Msa0395460:three_prime_UTR |
| GTAGAGTTATTTCATAAGTT+CGG | 0.415756 | 3_2:+12111550 | None:intergenic |
| AGACGTCCCCAATCCAAGTA+TGG | 0.420572 | 3_2:-12110372 | Msa0395460:CDS |
| AGCAACTCACAAACTAAAAC+AGG | 0.421254 | 3_2:+12111693 | None:intergenic |
| AGAGGAAGAGGCCGCGGTCG+AGG | 0.425950 | 3_2:-12110473 | Msa0395460:CDS |
| AGATTCAACCTGCTGATGTA+AGG | 0.427032 | 3_2:+12110427 | None:intergenic |
| TTTAAGATATTGTCTGTCAA+TGG | 0.428927 | 3_2:-12109793 | Msa0395460:three_prime_UTR |
| AGAGGAAGGGGTAGAGGAAG+AGG | 0.428938 | 3_2:-12110485 | Msa0395460:CDS |
| GTTTGATTACAGCTTGAGTT+GGG | 0.437970 | 3_2:-12110533 | Msa0395460:intron |
| CCACACTGGCGGTACTGGTA+GGG | 0.444180 | 3_2:-12110510 | Msa0395460:CDS |
| GAAGAGTAGCTAACACCTTA+AGG | 0.446150 | 3_2:-12110038 | Msa0395460:exon |
| GTTGCAGCAGGTTCAGGCAA+TGG | 0.446498 | 3_2:+12110194 | None:intergenic |
| TTGGGCCACACTGGCGGTAC+TGG | 0.449291 | 3_2:-12110515 | Msa0395460:CDS |
| GGCGGTACTGGTAGGGGAAG+AGG | 0.449384 | 3_2:-12110503 | Msa0395460:CDS |
| AAAACTTACAGCAGGGAAAC+GGG | 0.451379 | 3_2:+12114259 | None:intergenic |
| TGCATATCTGTTGTTGCAGC+AGG | 0.454294 | 3_2:+12110182 | None:intergenic |
| ATGCAACATGAAGAAATTCC+AGG | 0.456390 | 3_2:-12110164 | Msa0395460:CDS |
| TGTTTGATTACAGCTTGAGT+TGG | 0.458715 | 3_2:-12110534 | Msa0395460:intron |
| AAAACAACAATGAAACCAAC+TGG | 0.460380 | 3_2:+12109817 | None:intergenic |
| ACTGGTAGGGGAAGAGGAAG+GGG | 0.463619 | 3_2:-12110497 | Msa0395460:CDS |
| TTTCTGTCCCACACTACCTT+CGG | 0.475603 | 3_2:-12114393 | Msa0395460:five_prime_UTR |
| ACATGGCCATTCTGAGGCTG+GGG | 0.478857 | 3_2:-12110918 | Msa0395460:CDS |
| AGGGGTAGAGGAAGAGGCCG+CGG | 0.479703 | 3_2:-12110479 | Msa0395460:CDS |
| AAGAGAAACCTTACATCAGC+AGG | 0.497349 | 3_2:-12110435 | Msa0395460:CDS |
| CACAAGGTCATTGGTATACC+AGG | 0.499756 | 3_2:+12109967 | None:intergenic |
| GCCACACTGGCGGTACTGGT+AGG | 0.501008 | 3_2:-12110511 | Msa0395460:CDS |
| AAAGCAAAGGAAGGGGTGAA+TGG | 0.502976 | 3_2:+12114357 | None:intergenic |
| CACACTGGCGGTACTGGTAG+GGG | 0.503334 | 3_2:-12110509 | Msa0395460:CDS |
| TAATAGGCTAGATGAGGATG+AGG | 0.506471 | 3_2:-12110078 | Msa0395460:CDS |
| GAGGAAGAGGCCGCGGTCGA+GGG | 0.509630 | 3_2:-12110472 | Msa0395460:CDS |
| GGTAAAGTTGGGTTACCAGT+TGG | 0.509924 | 3_2:-12109832 | Msa0395460:three_prime_UTR |
| CCATGTCCATGGCTATAGTC+AGG | 0.515058 | 3_2:+12110935 | None:intergenic |
| CTGCAGCTTGCAGCAAACCT+TGG | 0.517052 | 3_2:-12110101 | Msa0395460:CDS |
| TGAGGAAGATTATGATGAGG+AGG | 0.517959 | 3_2:-12110060 | Msa0395460:CDS |
| GGAAATTTGAAAGCAAAGGA+AGG | 0.521410 | 3_2:+12114348 | None:intergenic |
| ATGCAAGCAGATGAGGATGT+TGG | 0.535775 | 3_2:-12111735 | Msa0395460:CDS |
| CCATCTTGTCGACATCAGAA+AGG | 0.538115 | 3_2:+12110135 | None:intergenic |
| TAGTATCTACACAAGGTCAT+TGG | 0.541634 | 3_2:+12109958 | None:intergenic |
| GAAGGGAAATTTGAAAGCAA+AGG | 0.546958 | 3_2:+12114344 | None:intergenic |
| CATCAGCCCCAGCCTCAGAA+TGG | 0.550548 | 3_2:+12110912 | None:intergenic |
| TACTGGTAGGGGAAGAGGAA+GGG | 0.550796 | 3_2:-12110498 | Msa0395460:CDS |
| CCGGCAAATCGACACTTCGT+AGG | 0.550850 | 3_2:-12114416 | Msa0395460:five_prime_UTR |
| CCTTTCTGATGTCGACAAGA+TGG | 0.553095 | 3_2:-12110135 | Msa0395460:CDS |
| ATCAAAATGGGAAATTGAAG+AGG | 0.555746 | 3_2:+12114304 | None:intergenic |
| CTATTGCCATACTTGGATTG+GGG | 0.558026 | 3_2:+12110366 | None:intergenic |
| TCAGGCAATGGGGCCTGAGT+AGG | 0.561825 | 3_2:+12110206 | None:intergenic |
| CAGCTTGAGTTGGGCCACAC+TGG | 0.562286 | 3_2:-12110524 | Msa0395460:CDS |
| TGGGAAATTGAAGAGGAAGA+AGG | 0.562612 | 3_2:+12114311 | None:intergenic |
| CATCTTGTCGACATCAGAAA+GGG | 0.564046 | 3_2:+12110136 | None:intergenic |
| GAAGATAATGCAAGCAGATG+AGG | 0.565858 | 3_2:-12111742 | Msa0395460:CDS |
| AGGAAGAGGCCGCGGTCGAG+GGG | 0.567783 | 3_2:-12110471 | Msa0395460:CDS |
| CCTCAGAATGGCCATGTCCA+TGG | 0.574358 | 3_2:+12110924 | None:intergenic |
| GAAATTTGAAAGCAAAGGAA+GGG | 0.575104 | 3_2:+12114349 | None:intergenic |
| GGATGAGGAAGATTATGATG+AGG | 0.581721 | 3_2:-12110063 | Msa0395460:CDS |
| CCTCATCTAGCCTATTACCA+AGG | 0.583547 | 3_2:+12110084 | None:intergenic |
| ATGTTTACCAGGAAAGCTGC+TGG | 0.583874 | 3_2:-12110787 | Msa0395460:intron |
| TGTAAGATCCGAAGGTAGTG+TGG | 0.584836 | 3_2:+12114385 | None:intergenic |
| TTGTAATGACAGCGATGAAG+AGG | 0.584902 | 3_2:-12110758 | Msa0395460:CDS |
| TTTGAGAGACATTGTCAGCA+GGG | 0.585914 | 3_2:-12110960 | Msa0395460:CDS |
| AGATAATGGTTCAGAACCAA+GGG | 0.587090 | 3_2:-12110345 | Msa0395460:CDS |
| TAGATAATGGTTCAGAACCA+AGG | 0.587959 | 3_2:-12110346 | Msa0395460:CDS |
| TTCGAACCTTCTCTTTGGAA+CGG | 0.592528 | 3_2:+12110883 | None:intergenic |
| AGAACCAAGGGAGTTATCAA+AGG | 0.594821 | 3_2:-12110333 | Msa0395460:CDS |
| ACATCAGAAAGGGACCAACC+TGG | 0.595072 | 3_2:+12110146 | None:intergenic |
| ATCGCGCCGTTCCAAAGAGA+AGG | 0.600860 | 3_2:-12110889 | Msa0395460:intron |
| GTACTGGTAGGGGAAGAGGA+AGG | 0.602926 | 3_2:-12110499 | Msa0395460:CDS |
| TGCAGCAGGTTCAGGCAATG+GGG | 0.603402 | 3_2:+12110196 | None:intergenic |
| CCTGACTATAGCCATGGACA+TGG | 0.613541 | 3_2:-12110935 | Msa0395460:CDS |
| CCATGGACATGGCCATTCTG+AGG | 0.616486 | 3_2:-12110924 | Msa0395460:CDS |
| AAATTTGAAAGCAAAGGAAG+GGG | 0.622601 | 3_2:+12114350 | None:intergenic |
| CCTTGGTAATAGGCTAGATG+AGG | 0.626019 | 3_2:-12110084 | Msa0395460:CDS |
| CTTGAGTTGGGCCACACTGG+CGG | 0.626402 | 3_2:-12110521 | Msa0395460:CDS |
| GTTTGCTGAATAGAAGTGCA+AGG | 0.627861 | 3_2:+12110401 | None:intergenic |
| GAAAATATTGCAGCTCACGA+AGG | 0.630972 | 3_2:-12110311 | Msa0395460:CDS |
| AGGGTTCCTGACTATAGCCA+TGG | 0.631288 | 3_2:-12110941 | Msa0395460:CDS |
| GTAAGATCCGAAGGTAGTGT+GGG | 0.633991 | 3_2:+12114386 | None:intergenic |
| GAGTAGCTAACACCTTAAGG+TGG | 0.636532 | 3_2:-12110035 | Msa0395460:exon |
| AAGCACGGATATACCTACTC+AGG | 0.637338 | 3_2:-12110219 | Msa0395460:CDS |
| GGATGTTGGAAAGATAGCAC+TGG | 0.638767 | 3_2:-12111721 | Msa0395460:CDS |
| TGGTGTGATGTAAGATCCGA+AGG | 0.643129 | 3_2:+12114377 | None:intergenic |
| AACATGAAGAAATTCCAGGT+TGG | 0.648140 | 3_2:-12110160 | Msa0395460:CDS |
| CAGTTCGAGCCCCTCGACCG+CGG | 0.651823 | 3_2:+12110462 | None:intergenic |
| CCCTACCAGTACCGCCAGTG+TGG | 0.652289 | 3_2:+12110510 | None:intergenic |
| CATTTGCTAGTATCTACACA+AGG | 0.680194 | 3_2:+12109951 | None:intergenic |
| TGCCAACTTACATGAAAACG+AGG | 0.703712 | 3_2:-12110255 | Msa0395460:CDS |
| ACAGCGATGAAGAGGCTAAG+CGG | 0.705575 | 3_2:-12110750 | Msa0395460:CDS |
| TATGAAATAACTCTACAGAG+AGG | 0.722734 | 3_2:-12111543 | Msa0395460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTTTTTTTTTTTTTGA+AGG | + | chr3_2:12109808-12109827 | None:intergenic | 10.0% |
| !!! | GATTATAATTTGAAATATAT+AGG | - | chr3_2:12111026-12111045 | Msa0395460:intron | 10.0% |
| !!! | TTATTTCTTAGTTAAATTTT+GGG | - | chr3_2:12112635-12112654 | Msa0395460:intron | 10.0% |
| !!! | AATTATAAAATAAGTGATTT+TGG | - | chr3_2:12113086-12113105 | Msa0395460:intron | 10.0% |
| !!! | TAATTGAGCTTTTTTTAATT+TGG | - | chr3_2:12110157-12110176 | Msa0395460:CDS | 15.0% |
| !!! | AATTGAGCTTTTTTTAATTT+GGG | - | chr3_2:12110158-12110177 | Msa0395460:CDS | 15.0% |
| !!! | TGATGATAAATTGATAATTT+AGG | - | chr3_2:12110183-12110202 | Msa0395460:CDS | 15.0% |
| !!! | GATGATAAATTGATAATTTA+GGG | - | chr3_2:12110184-12110203 | Msa0395460:CDS | 15.0% |
| !!! | TTGAACTTTGTTTATTTATT+TGG | - | chr3_2:12110424-12110443 | Msa0395460:CDS | 15.0% |
| !!! | TGAACTTTGTTTATTTATTT+GGG | - | chr3_2:12110425-12110444 | Msa0395460:CDS | 15.0% |
| !! | CTTAAATAGATTATTTGTAA+AGG | + | chr3_2:12112475-12112494 | None:intergenic | 15.0% |
| !!! | GTTATTTCTTAGTTAAATTT+TGG | - | chr3_2:12112634-12112653 | Msa0395460:intron | 15.0% |
| !!! | TATTTTCTATATTTTTCTTG+AGG | - | chr3_2:12112825-12112844 | Msa0395460:intron | 15.0% |
| !! | GTATGTTCTCAAATTATTAT+CGG | + | chr3_2:12110821-12110840 | None:intergenic | 20.0% |
| !! | ATTGTCCTATTAGAAAAATT+AGG | - | chr3_2:12111141-12111160 | Msa0395460:intron | 20.0% |
| !! | TTAGATTTCACAAAACTAAA+GGG | + | chr3_2:12111519-12111538 | None:intergenic | 20.0% |
| !! | TTTAGATTTCACAAAACTAA+AGG | + | chr3_2:12111520-12111539 | None:intergenic | 20.0% |
| !! | TGTGATAAAAAATAATGTTC+TGG | + | chr3_2:12111686-12111705 | None:intergenic | 20.0% |
| !!! | GAACATTATTTTTTATCACA+AGG | - | chr3_2:12111686-12111705 | Msa0395460:intron | 20.0% |
| !!! | ATTTTTTATCACAAGGTTAT+AGG | - | chr3_2:12111693-12111712 | Msa0395460:intron | 20.0% |
| !! | TAATCATAAATGTATCCAAT+AGG | + | chr3_2:12112047-12112066 | None:intergenic | 20.0% |
| !! | GATTTAATGATTAAGAATTG+AGG | - | chr3_2:12112910-12112929 | Msa0395460:intron | 20.0% |
| !!! | TTTTATAATTCGTAACAAAC+AGG | + | chr3_2:12113076-12113095 | None:intergenic | 20.0% |
| !! | AATAAAAAGATAAAAGCTAC+TGG | + | chr3_2:12113445-12113464 | None:intergenic | 20.0% |
| !! | ATTTGAACCTATCATTAAAA+GGG | + | chr3_2:12113592-12113611 | None:intergenic | 20.0% |
| !! | TATTTGAACCTATCATTAAA+AGG | + | chr3_2:12113593-12113612 | None:intergenic | 20.0% |
| !! | AAGAAGGTAACAATTTTGAA+GGG | + | chr3_2:12109976-12109995 | None:intergenic | 25.0% |
| !! | AATTGATAATTTAGGGTTTC+TGG | - | chr3_2:12110191-12110210 | Msa0395460:CDS | 25.0% |
| !! | ATTGATAATTTAGGGTTTCT+GGG | - | chr3_2:12110192-12110211 | Msa0395460:CDS | 25.0% |
| ! | GTATCTACGCAAATTATTAT+CGG | + | chr3_2:12110349-12110368 | None:intergenic | 25.0% |
| !! | TATTTGGGTTTGATGATAAT+AGG | - | chr3_2:12110440-12110459 | Msa0395460:CDS | 25.0% |
| !! | ATTTGGGTTTGATGATAATA+GGG | - | chr3_2:12110441-12110460 | Msa0395460:CDS | 25.0% |
| !! | GGAATTTTTGTATGATTCAT+AGG | - | chr3_2:12110516-12110535 | Msa0395460:CDS | 25.0% |
| !! | TTAGGTTTGATGATAATTGA+GGG | - | chr3_2:12110690-12110709 | Msa0395460:intron | 25.0% |
| ! | TGGAATTTAGTAAAGTTCAT+AGG | - | chr3_2:12110985-12111004 | Msa0395460:CDS | 25.0% |
| !! | AAACAAGTATTGTCAAATAG+CGG | + | chr3_2:12111236-12111255 | None:intergenic | 25.0% |
| !! | AATACTTGTTTAAGCCTTTT+TGG | - | chr3_2:12111245-12111264 | Msa0395460:intron | 25.0% |
| ! | TGTTAGTATCAAAATAAGTG+AGG | - | chr3_2:12111301-12111320 | Msa0395460:intron | 25.0% |
| ! | ATTAGGATAATTCAAATGGA+AGG | + | chr3_2:12111397-12111416 | None:intergenic | 25.0% |
| ! | TAGATTTCACAAAACTAAAG+GGG | + | chr3_2:12111518-12111537 | None:intergenic | 25.0% |
| ! | AATTGGGATAATATGGAAAA+CGG | + | chr3_2:12111739-12111758 | None:intergenic | 25.0% |
| ! | TTCAAGTAATTGGGATAATA+TGG | + | chr3_2:12111746-12111765 | None:intergenic | 25.0% |
| ! | AAATAATGTAATCAGAGAGA+TGG | - | chr3_2:12111810-12111829 | Msa0395460:intron | 25.0% |
| ! | CTTCTATAATCATCTTCATT+CGG | + | chr3_2:12111846-12111865 | None:intergenic | 25.0% |
| ! | TTTCATATATGGATAACTGT+AGG | + | chr3_2:12112007-12112026 | None:intergenic | 25.0% |
| !! | CAATGCAATCTTTTCATATA+TGG | + | chr3_2:12112018-12112037 | None:intergenic | 25.0% |
| ! | ATAAATGTATCCAATAGGTT+TGG | + | chr3_2:12112042-12112061 | None:intergenic | 25.0% |
| ! | AAAAACTATTCCACAAAACA+TGG | + | chr3_2:12112179-12112198 | None:intergenic | 25.0% |
| ! | AAGCTACTCAATATATCAAA+AGG | + | chr3_2:12112212-12112231 | None:intergenic | 25.0% |
| !!! | TCATGAAAACATTAATTTGC+AGG | - | chr3_2:12112525-12112544 | Msa0395460:intron | 25.0% |
| !! | GTAGAGTTATTTCATAAGTT+CGG | + | chr3_2:12112753-12112772 | None:intergenic | 25.0% |
| !! | AATTTTCCGAAAACTCTATT+CGG | + | chr3_2:12113043-12113062 | None:intergenic | 25.0% |
| !! | GTAATTTCCCTTTTAATGAT+AGG | - | chr3_2:12113582-12113601 | Msa0395460:intron | 25.0% |
| ! | ATAGATGCTTATGAATAAAG+AGG | + | chr3_2:12113631-12113650 | None:intergenic | 25.0% |
| ! | AGCATCTATAACCTTATAAT+TGG | - | chr3_2:12113642-12113661 | Msa0395460:intron | 25.0% |
| ! | GCATCTATAACCTTATAATT+GGG | - | chr3_2:12113643-12113662 | Msa0395460:intron | 25.0% |
| ! | ACATTTGATTCCCAATTATA+AGG | + | chr3_2:12113656-12113675 | None:intergenic | 25.0% |
| !!! | AAAAGTTCTAAGAAAGTAGA+AGG | - | chr3_2:12113688-12113707 | Msa0395460:intron | 25.0% |
| !!! | ATTTAGTTTCACCACTTTTT+AGG | - | chr3_2:12114384-12114403 | Msa0395460:five_prime_UTR | 25.0% |
| !!! | TTTAGTTTCACCACTTTTTA+GGG | - | chr3_2:12114385-12114404 | Msa0395460:five_prime_UTR | 25.0% |
| !! | TAAATGGATATTGTTGTTGT+AGG | - | chr3_2:12114410-12114429 | Msa0395460:five_prime_UTR | 25.0% |
| ! | ATTTACTTCTTGGTAAAGTT+GGG | - | chr3_2:12114457-12114476 | Msa0395460:five_prime_UTR | 25.0% |
| !! | TTTAAGATATTGTCTGTCAA+TGG | - | chr3_2:12114507-12114526 | Msa0395460:five_prime_UTR | 25.0% |
| AAATTTGAAAGCAAAGGAAG+GGG | + | chr3_2:12109953-12109972 | None:intergenic | 30.0% | |
| GAAATTTGAAAGCAAAGGAA+GGG | + | chr3_2:12109954-12109973 | None:intergenic | 30.0% | |
| ! | GAAGAAGGTAACAATTTTGA+AGG | + | chr3_2:12109977-12109996 | None:intergenic | 30.0% |
| ATCAAAATGGGAAATTGAAG+AGG | + | chr3_2:12109999-12110018 | None:intergenic | 30.0% | |
| AACAGAAAAAACTTACAGCA+GGG | + | chr3_2:12110051-12110070 | None:intergenic | 30.0% | |
| AAACAGAAAAAACTTACAGC+AGG | + | chr3_2:12110052-12110071 | None:intergenic | 30.0% | |
| ! | TTGATGATAATAGGGTTTCT+AGG | - | chr3_2:12110449-12110468 | Msa0395460:CDS | 30.0% |
| TATAATGACATGTGTCAATG+TGG | - | chr3_2:12110623-12110642 | Msa0395460:intron | 30.0% | |
| ! | CTTAGGTTTGATGATAATTG+AGG | - | chr3_2:12110689-12110708 | Msa0395460:intron | 30.0% |
| TGGAATTTAGTATGATTCAC+AGG | - | chr3_2:12110737-12110756 | Msa0395460:intron | 30.0% | |
| TCAATTGAGCTTTGCTTATT+TGG | - | chr3_2:12110892-12110911 | Msa0395460:CDS | 30.0% | |
| CAATTGAGCTTTGCTTATTT+GGG | - | chr3_2:12110893-12110912 | Msa0395460:CDS | 30.0% | |
| ! | TTTGGGTTTGATGATAATTG+AGG | - | chr3_2:12110910-12110929 | Msa0395460:CDS | 30.0% |
| ! | TTGGGTTTGATGATAATTGA+GGG | - | chr3_2:12110911-12110930 | Msa0395460:CDS | 30.0% |
| ! | GCTGTCCTAATTTTTCTAAT+AGG | + | chr3_2:12111149-12111168 | None:intergenic | 30.0% |
| ACTATAACGCTATATCATAG+AGG | + | chr3_2:12111203-12111222 | None:intergenic | 30.0% | |
| ! | TTACGATGGGTATGTTTTAT+TGG | - | chr3_2:12111353-12111372 | Msa0395460:intron | 30.0% |
| !! | TACGATGGGTATGTTTTATT+GGG | - | chr3_2:12111354-12111373 | Msa0395460:intron | 30.0% |
| GAGCATTAGGATAATTCAAA+TGG | + | chr3_2:12111401-12111420 | None:intergenic | 30.0% | |
| TTTGAATTATCCTAATGCTC+TGG | - | chr3_2:12111401-12111420 | Msa0395460:intron | 30.0% | |
| ATTGGGATAATATGGAAAAC+GGG | + | chr3_2:12111738-12111757 | None:intergenic | 30.0% | |
| AAGCTTCACTTCAAGTAATT+GGG | + | chr3_2:12111755-12111774 | None:intergenic | 30.0% | |
| ! | CTGAAGTCTTTTATAAGTGT+AGG | - | chr3_2:12111882-12111901 | Msa0395460:intron | 30.0% |
| GATACATTTATGATTACACC+TGG | - | chr3_2:12112051-12112070 | Msa0395460:intron | 30.0% | |
| TAACAAAGAGGAAAGAATGA+AGG | + | chr3_2:12112113-12112132 | None:intergenic | 30.0% | |
| CATAGAACACTTTAACAAAG+AGG | + | chr3_2:12112125-12112144 | None:intergenic | 30.0% | |
| GACAATACTTTGTACTAGAT+CGG | + | chr3_2:12112353-12112372 | None:intergenic | 30.0% | |
| !! | AAAACATTAATTTGCAGGCT+CGG | - | chr3_2:12112530-12112549 | Msa0395460:intron | 30.0% |
| TATGAAATAACTCTACAGAG+AGG | - | chr3_2:12112757-12112776 | Msa0395460:intron | 30.0% | |
| TTACAAATGCAATGCATTCA+TGG | + | chr3_2:12112791-12112810 | None:intergenic | 30.0% | |
| ! | ACCCTAAATGTAAAGCATTT+GGG | - | chr3_2:12113001-12113020 | Msa0395460:intron | 30.0% |
| ACCCAAATGCTTTACATTTA+GGG | + | chr3_2:12113005-12113024 | None:intergenic | 30.0% | |
| AACCCAAATGCTTTACATTT+AGG | + | chr3_2:12113006-12113025 | None:intergenic | 30.0% | |
| ! | ATATCTCCGAATAGAGTTTT+CGG | - | chr3_2:12113034-12113053 | Msa0395460:intron | 30.0% |
| ! | GTTTTCGGAAAATTTACTGT+CGG | - | chr3_2:12113049-12113068 | Msa0395460:intron | 30.0% |
| ! | TTTTCGGAAAATTTACTGTC+GGG | - | chr3_2:12113050-12113069 | Msa0395460:intron | 30.0% |
| ! | TATCTAAAATCTGCTTCGAA+TGG | + | chr3_2:12113227-12113246 | None:intergenic | 30.0% |
| !! | TTTTTAGTCATGATCGATGA+TGG | - | chr3_2:12113736-12113755 | Msa0395460:intron | 30.0% |
| ATACCAGGCAAAGAAAAAAA+GGG | + | chr3_2:12114321-12114340 | None:intergenic | 30.0% | |
| TATACCAGGCAAAGAAAAAA+AGG | + | chr3_2:12114322-12114341 | None:intergenic | 30.0% | |
| !!! | ACCACTTTTTAGGGTTTAAA+TGG | - | chr3_2:12114394-12114413 | Msa0395460:five_prime_UTR | 30.0% |
| TCCATTTAAACCCTAAAAAG+TGG | + | chr3_2:12114398-12114417 | None:intergenic | 30.0% | |
| CTAGTACATGATTTACTTCT+TGG | - | chr3_2:12114447-12114466 | Msa0395460:five_prime_UTR | 30.0% | |
| GATTTACTTCTTGGTAAAGT+TGG | - | chr3_2:12114456-12114475 | Msa0395460:five_prime_UTR | 30.0% | |
| AAAACAACAATGAAACCAAC+TGG | + | chr3_2:12114486-12114505 | None:intergenic | 30.0% | |
| GGAAATTTGAAAGCAAAGGA+AGG | + | chr3_2:12109955-12109974 | None:intergenic | 35.0% | |
| GAAGGGAAATTTGAAAGCAA+AGG | + | chr3_2:12109959-12109978 | None:intergenic | 35.0% | |
| CTTCTTCATGGCATCAAAAT+GGG | + | chr3_2:12110011-12110030 | None:intergenic | 35.0% | |
| TCTTCTTCATGGCATCAAAA+TGG | + | chr3_2:12110012-12110031 | None:intergenic | 35.0% | |
| AAAAACTTACAGCAGGGAAA+CGG | + | chr3_2:12110045-12110064 | None:intergenic | 35.0% | |
| ATCCAGATGCAAAAACACAA+CGG | + | chr3_2:12110107-12110126 | None:intergenic | 35.0% | |
| ! | ATAATAGGGTTTCTAGGTTG+TGG | - | chr3_2:12110455-12110474 | Msa0395460:CDS | 35.0% |
| ! | TAATAGGGTTTCTAGGTTGT+GGG | - | chr3_2:12110456-12110475 | Msa0395460:CDS | 35.0% |
| CTAAGTAACCAAAGCTCAAT+TGG | + | chr3_2:12110674-12110693 | None:intergenic | 35.0% | |
| ! | CAATTGAGCTTTGGTTACTT+AGG | - | chr3_2:12110672-12110691 | Msa0395460:intron | 35.0% |
| TAATTGAGGGTTACTAGTTG+TGG | - | chr3_2:12110703-12110722 | Msa0395460:intron | 35.0% | |
| AATTGAGGGTTACTAGTTGT+GGG | - | chr3_2:12110704-12110723 | Msa0395460:intron | 35.0% | |
| AAAAACTCAGAGAGCAATAC+CGG | - | chr3_2:12110775-12110794 | Msa0395460:CDS | 35.0% | |
| TGATGATAATTGAGGGTTTC+TGG | - | chr3_2:12110918-12110937 | Msa0395460:CDS | 35.0% | |
| GATGATAATTGAGGGTTTCT+GGG | - | chr3_2:12110919-12110938 | Msa0395460:CDS | 35.0% | |
| !! | TAATGGGTTATTGATAGCAC+TGG | + | chr3_2:12111081-12111100 | None:intergenic | 35.0% |
| AGCAGATGTAGCGAAATAAT+GGG | + | chr3_2:12111097-12111116 | None:intergenic | 35.0% | |
| TAGCAGATGTAGCGAAATAA+TGG | + | chr3_2:12111098-12111117 | None:intergenic | 35.0% | |
| TAAGTGAGGAATGCATTCAT+TGG | - | chr3_2:12111315-12111334 | Msa0395460:intron | 35.0% | |
| AAGTGAGGAATGCATTCATT+GGG | - | chr3_2:12111316-12111335 | Msa0395460:intron | 35.0% | |
| ATTGGGTTAACATACCTCTT+TGG | - | chr3_2:12111371-12111390 | Msa0395460:intron | 35.0% | |
| ! | CTTCAAATTTCCAGAGCATT+AGG | + | chr3_2:12111414-12111433 | None:intergenic | 35.0% |
| AGGATCATCGAATTCACAAA+CGG | + | chr3_2:12111449-12111468 | None:intergenic | 35.0% | |
| ! | ATTCGATGATCCTTTTGTGA+TGG | - | chr3_2:12111456-12111475 | Msa0395460:intron | 35.0% |
| ! | TGATCCTTTTGTGATGGTTA+CGG | - | chr3_2:12111462-12111481 | Msa0395460:intron | 35.0% |
| CAAGCTTCACTTCAAGTAAT+TGG | + | chr3_2:12111756-12111775 | None:intergenic | 35.0% | |
| ATGTAATCAGAGAGATGGAT+TGG | - | chr3_2:12111815-12111834 | Msa0395460:intron | 35.0% | |
| CATATATGGATAACTGTAGG+AGG | + | chr3_2:12112004-12112023 | None:intergenic | 35.0% | |
| ! | ATTGCATTGACCAAACCTAT+TGG | - | chr3_2:12112029-12112048 | Msa0395460:intron | 35.0% |
| TTATGATTACACCTGGAGTT+CGG | - | chr3_2:12112058-12112077 | Msa0395460:intron | 35.0% | |
| ! | AAATTGCTGACCATGTTTTG+TGG | - | chr3_2:12112166-12112185 | Msa0395460:intron | 35.0% |
| TCTATAGCACTATAGTGTAG+CGG | - | chr3_2:12112304-12112323 | Msa0395460:intron | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | + | chr3_2:12112610-12112629 | None:intergenic | 35.0% | |
| ! | TTTTCTTACAGCAAAAGCTC+TGG | - | chr3_2:12112702-12112721 | Msa0395460:intron | 35.0% |
| TGCATTGCATTTGTAAGTTG+TGG | - | chr3_2:12112795-12112814 | Msa0395460:intron | 35.0% | |
| AAGTAAAATCGGTCTATGCA+TGG | + | chr3_2:12112878-12112897 | None:intergenic | 35.0% | |
| AACACCAGCACAAGTAAAAT+CGG | + | chr3_2:12112889-12112908 | None:intergenic | 35.0% | |
| AATTTCCGATTCTCATCTCT+CGG | - | chr3_2:12112940-12112959 | Msa0395460:intron | 35.0% | |
| TGATCAGTTCATACTTAGCA+TGG | + | chr3_2:12112982-12113001 | None:intergenic | 35.0% | |
| ! | CACCCTAAATGTAAAGCATT+TGG | - | chr3_2:12113000-12113019 | Msa0395460:intron | 35.0% |
| TTCCTGGTAAACATTCTTAG+CGG | + | chr3_2:12113507-12113526 | None:intergenic | 35.0% | |
| TGTTTGATTACAGCTTGAGT+TGG | - | chr3_2:12113766-12113785 | Msa0395460:intron | 35.0% | |
| GTTTGATTACAGCTTGAGTT+GGG | - | chr3_2:12113767-12113786 | Msa0395460:intron | 35.0% | |
| TCTATTGCCATACTTGGATT+GGG | + | chr3_2:12113938-12113957 | None:intergenic | 35.0% | |
| ATCTATTGCCATACTTGGAT+TGG | + | chr3_2:12113939-12113958 | None:intergenic | 35.0% | |
| CCATTATCTATTGCCATACT+TGG | + | chr3_2:12113944-12113963 | None:intergenic | 35.0% | |
| CCAAGTATGGCAATAGATAA+TGG | - | chr3_2:12113941-12113960 | Msa0395460:intron | 35.0% | |
| ! | TAGATAATGGTTCAGAACCA+AGG | - | chr3_2:12113954-12113973 | Msa0395460:intron | 35.0% |
| ! | AGATAATGGTTCAGAACCAA+GGG | - | chr3_2:12113955-12113974 | Msa0395460:intron | 35.0% |
| !! | TTTTCCTTTGATAACTCCCT+TGG | + | chr3_2:12113974-12113993 | None:intergenic | 35.0% |
| ! | TTTCATGTAAGTTGGCATTC+AGG | + | chr3_2:12114042-12114061 | None:intergenic | 35.0% |
| GGACAAAAACAATACAAGCA+CGG | - | chr3_2:12114066-12114085 | Msa0395460:intron | 35.0% | |
| ATGCAACATGAAGAAATTCC+AGG | - | chr3_2:12114136-12114155 | Msa0395460:intron | 35.0% | |
| AACATGAAGAAATTCCAGGT+TGG | - | chr3_2:12114140-12114159 | Msa0395460:intron | 35.0% | |
| TAGTATCTACACAAGGTCAT+TGG | + | chr3_2:12114345-12114364 | None:intergenic | 35.0% | |
| ! | CATTTGCTAGTATCTACACA+AGG | + | chr3_2:12114352-12114371 | None:intergenic | 35.0% |
| TGGGAAATTGAAGAGGAAGA+AGG | + | chr3_2:12109992-12110011 | None:intergenic | 40.0% | |
| GGTATCAAGCTTCTTCTTCA+TGG | + | chr3_2:12110023-12110042 | None:intergenic | 40.0% | |
| AAAACTTACAGCAGGGAAAC+GGG | + | chr3_2:12110044-12110063 | None:intergenic | 40.0% | |
| ! | AATTTAGGGTTTCTGGGTTG+CGG | - | chr3_2:12110198-12110217 | Msa0395460:CDS | 40.0% |
| AATTGGGTGGAATGGTATGA+TGG | - | chr3_2:12110228-12110247 | Msa0395460:CDS | 40.0% | |
| ATTGGGTGGAATGGTATGAT+GGG | - | chr3_2:12110229-12110248 | Msa0395460:CDS | 40.0% | |
| ! | AATAGGGTTTCTAGGTTGTG+GGG | - | chr3_2:12110457-12110476 | Msa0395460:CDS | 40.0% |
| ATTGAGGGTTACTAGTTGTG+GGG | - | chr3_2:12110705-12110724 | Msa0395460:intron | 40.0% | |
| !!! | TTGCTCTCTGAGTTTTTAGC+AGG | + | chr3_2:12110772-12110791 | None:intergenic | 40.0% |
| AAAGCTCAATTGACATGTGC+GGG | + | chr3_2:12110885-12110904 | None:intergenic | 40.0% | |
| CAAAGCTCAATTGACATGTG+CGG | + | chr3_2:12110886-12110905 | None:intergenic | 40.0% | |
| ! | ATTGAGGGTTTCTGGGTTAT+CGG | - | chr3_2:12110926-12110945 | Msa0395460:CDS | 40.0% |
| AATTGGGTAGAGTGGTATGT+TGG | - | chr3_2:12110955-12110974 | Msa0395460:CDS | 40.0% | |
| ATTGGGTAGAGTGGTATGTT+GGG | - | chr3_2:12110956-12110975 | Msa0395460:CDS | 40.0% | |
| TGCTAGCAAAACTGGAATAG+AGG | - | chr3_2:12111113-12111132 | Msa0395460:intron | 40.0% | |
| GAAAAATTAGGACAGCGTCA+CGG | - | chr3_2:12111153-12111172 | Msa0395460:intron | 40.0% | |
| !!! | GTTTAAGCCTTTTTGGTGCT+TGG | - | chr3_2:12111252-12111271 | Msa0395460:intron | 40.0% |
| AAACCAACCAAGCACCAAAA+AGG | + | chr3_2:12111262-12111281 | None:intergenic | 40.0% | |
| !!! | TTTTTGGTGCTTGGTTGGTT+TGG | - | chr3_2:12111261-12111280 | Msa0395460:intron | 40.0% |
| !!! | TTTTGGTGCTTGGTTGGTTT+GGG | - | chr3_2:12111262-12111281 | Msa0395460:intron | 40.0% |
| AGTGAGGAATGCATTCATTG+GGG | - | chr3_2:12111317-12111336 | Msa0395460:intron | 40.0% | |
| CTGTTGTTGAGCTTTACGAT+GGG | - | chr3_2:12111340-12111359 | Msa0395460:intron | 40.0% | |
| ATTCAAATGGAAGGCCAAAG+AGG | + | chr3_2:12111388-12111407 | None:intergenic | 40.0% | |
| CTAACCGTAACCATCACAAA+AGG | + | chr3_2:12111469-12111488 | None:intergenic | 40.0% | |
| GGTTACGGTTAGAGAGATAT+AGG | - | chr3_2:12111477-12111496 | Msa0395460:intron | 40.0% | |
| GCAGTTTGCATCAGAATTTG+AGG | + | chr3_2:12111577-12111596 | None:intergenic | 40.0% | |
| GATAATATGGAAAACGGGCA+AGG | + | chr3_2:12111733-12111752 | None:intergenic | 40.0% | |
| ATATATATGACAGCAGCAGC+TGG | + | chr3_2:12111924-12111943 | None:intergenic | 40.0% | |
| TATGATTACACCTGGAGTTC+GGG | - | chr3_2:12112059-12112078 | Msa0395460:intron | 40.0% | |
| CAGAACAGTGTGATTCAACA+AGG | + | chr3_2:12112237-12112256 | None:intergenic | 40.0% | |
| ! | TCGCGGATTGTAGGAAATAA+CGG | + | chr3_2:12112411-12112430 | None:intergenic | 40.0% |
| GAAGATAATGCAAGCAGATG+AGG | - | chr3_2:12112558-12112577 | Msa0395460:intron | 40.0% | |
| TTCTCTCATGTTGTTGACCT+CGG | - | chr3_2:12112673-12112692 | Msa0395460:intron | 40.0% | |
| CTGTAAGAAAATCAAGACCG+AGG | + | chr3_2:12112693-12112712 | None:intergenic | 40.0% | |
| TGGACAGAAACAATTCACAG+CGG | + | chr3_2:12112858-12112877 | None:intergenic | 40.0% | |
| !! | TAGACCGATTTTACTTGTGC+TGG | - | chr3_2:12112882-12112901 | Msa0395460:intron | 40.0% |
| TTTGACCGAGAGATGAGAAT+CGG | + | chr3_2:12112948-12112967 | None:intergenic | 40.0% | |
| !! | TTTTGAGAGACATTGTCAGC+AGG | - | chr3_2:12113339-12113358 | Msa0395460:intron | 40.0% |
| TTTGAGAGACATTGTCAGCA+GGG | - | chr3_2:12113340-12113359 | Msa0395460:intron | 40.0% | |
| ! | TTCGAACCTTCTCTTTGGAA+CGG | + | chr3_2:12113420-12113439 | None:intergenic | 40.0% |
| AACCGCTAAGAATGTTTACC+AGG | - | chr3_2:12113502-12113521 | Msa0395460:intron | 40.0% | |
| TTGTAATGACAGCGATGAAG+AGG | - | chr3_2:12113542-12113561 | Msa0395460:intron | 40.0% | |
| TCATGACTAAAAACTGCAGC+AGG | + | chr3_2:12113729-12113748 | None:intergenic | 40.0% | |
| AAGAGAAACCTTACATCAGC+AGG | - | chr3_2:12113865-12113884 | Msa0395460:intron | 40.0% | |
| AGATTCAACCTGCTGATGTA+AGG | + | chr3_2:12113876-12113895 | None:intergenic | 40.0% | |
| ! | GTTTGCTGAATAGAAGTGCA+AGG | + | chr3_2:12113902-12113921 | None:intergenic | 40.0% |
| CTATTGCCATACTTGGATTG+GGG | + | chr3_2:12113937-12113956 | None:intergenic | 40.0% | |
| AGAACCAAGGGAGTTATCAA+AGG | - | chr3_2:12113967-12113986 | Msa0395460:intron | 40.0% | |
| GAAAATATTGCAGCTCACGA+AGG | - | chr3_2:12113989-12114008 | Msa0395460:intron | 40.0% | |
| TGGCATTCAGGTCAATGTTT+CGG | + | chr3_2:12114030-12114049 | None:intergenic | 40.0% | |
| TGCCAACTTACATGAAAACG+AGG | - | chr3_2:12114045-12114064 | Msa0395460:intron | 40.0% | |
| ! | GTCCTCGTTTTCATGTAAGT+TGG | + | chr3_2:12114050-12114069 | None:intergenic | 40.0% |
| CATCTTGTCGACATCAGAAA+GGG | + | chr3_2:12114167-12114186 | None:intergenic | 40.0% | |
| ! | TTGCAGCAAACCTTGGTAAT+AGG | - | chr3_2:12114206-12114225 | Msa0395460:intron | 40.0% |
| TAATAGGCTAGATGAGGATG+AGG | - | chr3_2:12114222-12114241 | Msa0395460:intron | 40.0% | |
| GGATGAGGAAGATTATGATG+AGG | - | chr3_2:12114237-12114256 | Msa0395460:intron | 40.0% | |
| TGAGGAAGATTATGATGAGG+AGG | - | chr3_2:12114240-12114259 | Msa0395460:intron | 40.0% | |
| GAAGAGTAGCTAACACCTTA+AGG | - | chr3_2:12114262-12114281 | Msa0395460:intron | 40.0% | |
| GAGTCATGATTTCCACCTTA+AGG | + | chr3_2:12114280-12114299 | None:intergenic | 40.0% | |
| !!! | GATCCCTTTTTTTCTTTGCC+TGG | - | chr3_2:12114315-12114334 | Msa0395460:five_prime_UTR | 40.0% |
| ACTCGTACGAACGCATATTC+CGG | - | chr3_2:12109865-12109884 | Msa0395460:three_prime_UTR | 45.0% | |
| TTTCTGTCCCACACTACCTT+CGG | - | chr3_2:12109907-12109926 | Msa0395460:three_prime_UTR | 45.0% | |
| GTAAGATCCGAAGGTAGTGT+GGG | + | chr3_2:12109917-12109936 | None:intergenic | 45.0% | |
| TGTAAGATCCGAAGGTAGTG+TGG | + | chr3_2:12109918-12109937 | None:intergenic | 45.0% | |
| TGGTGTGATGTAAGATCCGA+AGG | + | chr3_2:12109926-12109945 | None:intergenic | 45.0% | |
| AAAGCAAAGGAAGGGGTGAA+TGG | + | chr3_2:12109946-12109965 | None:intergenic | 45.0% | |
| !! | TGCCGTTGTGTTTTTGCATC+TGG | - | chr3_2:12110102-12110121 | Msa0395460:CDS | 45.0% |
| ! | ATTTAGGGTTTCTGGGTTGC+GGG | - | chr3_2:12110199-12110218 | Msa0395460:CDS | 45.0% |
| !! | AATGGTATGATGGGTGTGAC+TGG | - | chr3_2:12110238-12110257 | Msa0395460:CDS | 45.0% |
| TACATGTGTCAGTGTCGTGT+TGG | - | chr3_2:12110384-12110403 | Msa0395460:CDS | 45.0% | |
| GTCAGTGTCGTGTTGGATAT+TGG | - | chr3_2:12110391-12110410 | Msa0395460:CDS | 45.0% | |
| ! | ATAGGGTTTCTAGGTTGTGG+GGG | - | chr3_2:12110458-12110477 | Msa0395460:CDS | 45.0% |
| AATTGGGTAGAGTGGCATGA+TGG | - | chr3_2:12110485-12110504 | Msa0395460:CDS | 45.0% | |
| ATTGGGTAGAGTGGCATGAT+GGG | - | chr3_2:12110486-12110505 | Msa0395460:CDS | 45.0% | |
| CGATGTATTAGTGTCGTGAC+CGG | + | chr3_2:12110580-12110599 | None:intergenic | 45.0% | |
| GACATGTGTCAATGTGGTGT+TGG | - | chr3_2:12110629-12110648 | Msa0395460:intron | 45.0% | |
| GACATGTGCCAATTGAGCTT+TGG | - | chr3_2:12110663-12110682 | Msa0395460:intron | 45.0% | |
| GTCAATGTGACTGTTGTGAC+CGG | + | chr3_2:12110797-12110816 | None:intergenic | 45.0% | |
| TGCATGTGTCAATGTCGTGT+CGG | - | chr3_2:12110856-12110875 | Msa0395460:intron | 45.0% | |
| ! | TTGAGGGTTTCTGGGTTATC+GGG | - | chr3_2:12110927-12110946 | Msa0395460:CDS | 45.0% |
| AGTGGTATGTTGGGTTTGAC+TGG | - | chr3_2:12110965-12110984 | Msa0395460:CDS | 45.0% | |
| GCTACATCTGCTAGCAAAAC+TGG | - | chr3_2:12111105-12111124 | Msa0395460:intron | 45.0% | |
| ! | CAGCGTCACGGTTTTTATAG+CGG | - | chr3_2:12111165-12111184 | Msa0395460:intron | 45.0% |
| TTGTCAAATAGCGGCGATAG+AGG | + | chr3_2:12111227-12111246 | None:intergenic | 45.0% | |
| !!! | AAGCCTTTTTGGTGCTTGGT+TGG | - | chr3_2:12111256-12111275 | Msa0395460:intron | 45.0% |
| GCTGTTGTTGAGCTTTACGA+TGG | - | chr3_2:12111339-12111358 | Msa0395460:intron | 45.0% | |
| TTAACCAAAACCCGAACTCC+AGG | + | chr3_2:12112072-12112091 | None:intergenic | 45.0% | |
| CACTGTTCTGCTTAGCCAAT+AGG | - | chr3_2:12112247-12112266 | Msa0395460:intron | 45.0% | |
| TTCTGCTTAGCCAATAGGAG+TGG | - | chr3_2:12112252-12112271 | Msa0395460:intron | 45.0% | |
| GACAACACTTCCACTCCTAT+TGG | + | chr3_2:12112265-12112284 | None:intergenic | 45.0% | |
| !! | GTGGAAGTGTTGTCAAACAG+TGG | - | chr3_2:12112271-12112290 | Msa0395460:intron | 45.0% |
| ! | GCACTATAGTGTAGCGGAAT+TGG | - | chr3_2:12112310-12112329 | Msa0395460:intron | 45.0% |
| ! | TGTTGTCAATCGCGGATTGT+AGG | + | chr3_2:12112420-12112439 | None:intergenic | 45.0% |
| ATGCAAGCAGATGAGGATGT+TGG | - | chr3_2:12112565-12112584 | Msa0395460:intron | 45.0% | |
| GGATGTTGGAAAGATAGCAC+TGG | - | chr3_2:12112579-12112598 | Msa0395460:intron | 45.0% | |
| CAGAAACAATTCACAGCGGA+AGG | + | chr3_2:12112854-12112873 | None:intergenic | 45.0% | |
| TCTCATCTCTCGGTCAAAGA+CGG | - | chr3_2:12112950-12112969 | Msa0395460:intron | 45.0% | |
| CCTGAAATTTGTGTCACCAC+TGG | + | chr3_2:12113285-12113304 | None:intergenic | 45.0% | |
| CCAGTGGTGACACAAATTTC+AGG | - | chr3_2:12113282-12113301 | Msa0395460:intron | 45.0% | |
| TGGACTTCGAACCTTCTCTT+TGG | + | chr3_2:12113425-12113444 | None:intergenic | 45.0% | |
| ATGTTTACCAGGAAAGCTGC+TGG | - | chr3_2:12113513-12113532 | Msa0395460:intron | 45.0% | |
| AGAGGCTAAGCGGAGTAAAA+TGG | - | chr3_2:12113560-12113579 | Msa0395460:intron | 45.0% | |
| AAGCACGGATATACCTACTC+AGG | - | chr3_2:12114081-12114100 | Msa0395460:intron | 45.0% | |
| TGCATATCTGTTGTTGCAGC+AGG | + | chr3_2:12114121-12114140 | None:intergenic | 45.0% | |
| CCATCTTGTCGACATCAGAA+AGG | + | chr3_2:12114168-12114187 | None:intergenic | 45.0% | |
| CCTTTCTGATGTCGACAAGA+TGG | - | chr3_2:12114165-12114184 | Msa0395460:intron | 45.0% | |
| CCTCATCTAGCCTATTACCA+AGG | + | chr3_2:12114219-12114238 | None:intergenic | 45.0% | |
| ! | CCTTGGTAATAGGCTAGATG+AGG | - | chr3_2:12114216-12114235 | Msa0395460:intron | 45.0% |
| GAGTAGCTAACACCTTAAGG+TGG | - | chr3_2:12114265-12114284 | Msa0395460:intron | 45.0% | |
| CACAAGGTCATTGGTATACC+AGG | + | chr3_2:12114336-12114355 | None:intergenic | 45.0% | |
| GGTAAAGTTGGGTTACCAGT+TGG | - | chr3_2:12114468-12114487 | Msa0395460:five_prime_UTR | 45.0% | |
| !! | CCTACGAAGTGTCGATTTGC+CGG | + | chr3_2:12109887-12109906 | None:intergenic | 50.0% |
| ! | TTTAGGGTTTCTGGGTTGCG+GGG | - | chr3_2:12110200-12110219 | Msa0395460:CDS | 50.0% |
| ! | CGATGTGTCACTGTTGTGAC+CGG | + | chr3_2:12110323-12110342 | None:intergenic | 50.0% |
| ! | TAGGTTGTGGGGGTGTGAAT+TGG | - | chr3_2:12110468-12110487 | Msa0395460:CDS | 50.0% |
| ! | AGGTTGTGGGGGTGTGAATT+GGG | - | chr3_2:12110469-12110488 | Msa0395460:CDS | 50.0% |
| ATTAGTGTCGTGACCGGTGT+CGG | + | chr3_2:12110574-12110593 | None:intergenic | 50.0% | |
| !! | GTGTCAATGTGGTGTTGGTG+TGG | - | chr3_2:12110634-12110653 | Msa0395460:intron | 50.0% |
| TAGTTGTGGGGTGGTGTGAT+TGG | - | chr3_2:12110717-12110736 | Msa0395460:intron | 50.0% | |
| ! | TGAGGGTTTCTGGGTTATCG+GGG | - | chr3_2:12110928-12110947 | Msa0395460:CDS | 50.0% |
| TGGGTTATCGGGGTGTGAAT+TGG | - | chr3_2:12110938-12110957 | Msa0395460:CDS | 50.0% | |
| GGGTTATCGGGGTGTGAATT+GGG | - | chr3_2:12110939-12110958 | Msa0395460:CDS | 50.0% | |
| !! | TACACCTGGAGTTCGGGTTT+TGG | - | chr3_2:12112065-12112084 | Msa0395460:intron | 50.0% |
| ! | CCACTGAGTGTTGTCAATCG+CGG | + | chr3_2:12112428-12112447 | None:intergenic | 50.0% |
| CGCGATTGACAACACTCAGT+GGG | - | chr3_2:12112426-12112445 | Msa0395460:intron | 50.0% | |
| GCGATTGACAACACTCAGTG+GGG | - | chr3_2:12112427-12112446 | Msa0395460:intron | 50.0% | |
| TGTGAGCCTAGTCTAACCAG+TGG | - | chr3_2:12113266-12113285 | Msa0395460:intron | 50.0% | |
| ! | GTGTCACCACTGGTTAGACT+AGG | + | chr3_2:12113275-12113294 | None:intergenic | 50.0% |
| AGGGTTCCTGACTATAGCCA+TGG | - | chr3_2:12113359-12113378 | Msa0395460:intron | 50.0% | |
| CCATGTCCATGGCTATAGTC+AGG | + | chr3_2:12113368-12113387 | None:intergenic | 50.0% | |
| CCTGACTATAGCCATGGACA+TGG | - | chr3_2:12113365-12113384 | Msa0395460:intron | 50.0% | |
| ATCATCACCAGCAGCTTTCC+TGG | + | chr3_2:12113523-12113542 | None:intergenic | 50.0% | |
| ACAGCGATGAAGAGGCTAAG+CGG | - | chr3_2:12113550-12113569 | Msa0395460:intron | 50.0% | |
| TACTGGTAGGGGAAGAGGAA+GGG | - | chr3_2:12113802-12113821 | Msa0395460:intron | 50.0% | |
| AGACGTCCCCAATCCAAGTA+TGG | - | chr3_2:12113928-12113947 | Msa0395460:intron | 50.0% | |
| TTGCAGCAGGTTCAGGCAAT+GGG | + | chr3_2:12114108-12114127 | None:intergenic | 50.0% | |
| TCTGTTGTTGCAGCAGGTTC+AGG | + | chr3_2:12114115-12114134 | None:intergenic | 50.0% | |
| ACATCAGAAAGGGACCAACC+TGG | + | chr3_2:12114157-12114176 | None:intergenic | 50.0% | |
| CCGGCAAATCGACACTTCGT+AGG | - | chr3_2:12109884-12109903 | Msa0395460:three_prime_UTR | 55.0% | |
| ! | TTAGGGTTTCTGGGTTGCGG+GGG | - | chr3_2:12110201-12110220 | Msa0395460:CDS | 55.0% |
| GGGGTGTGAATTGGGTGGAA+TGG | - | chr3_2:12110220-12110239 | Msa0395460:CDS | 55.0% | |
| GTCACTGTTGTGACCGGTGT+CGG | + | chr3_2:12110317-12110336 | None:intergenic | 55.0% | |
| GGGGTGTGAATTGGGTAGAG+TGG | - | chr3_2:12110477-12110496 | Msa0395460:CDS | 55.0% | |
| !! | AGTGGCATGATGGGCATGAC+TGG | - | chr3_2:12110495-12110514 | Msa0395460:CDS | 55.0% |
| GCTCACATAGACACCGACAC+CGG | - | chr3_2:12110558-12110577 | Msa0395460:intron | 55.0% | |
| GAGGGTTACTAGTTGTGGGG+TGG | - | chr3_2:12110708-12110727 | Msa0395460:intron | 55.0% | |
| GGGGTGTGAATTGGGTAGAG+TGG | - | chr3_2:12110477-12110496 | Msa0395460:CDS | 55.0% | |
| !! | TGGTGCTTGGTTGGTTTGGG+TGG | - | chr3_2:12111265-12111284 | Msa0395460:intron | 55.0% |
| !! | GGTGCTTGGTTGGTTTGGGT+GGG | - | chr3_2:12111266-12111285 | Msa0395460:intron | 55.0% |
| !! | GTGCTTGGTTGGTTTGGGTG+GGG | - | chr3_2:12111267-12111286 | Msa0395460:intron | 55.0% |
| CCGCGATTGACAACACTCAG+TGG | - | chr3_2:12112425-12112444 | Msa0395460:intron | 55.0% | |
| CCTCAGAATGGCCATGTCCA+TGG | + | chr3_2:12113379-12113398 | None:intergenic | 55.0% | |
| CCATGGACATGGCCATTCTG+AGG | - | chr3_2:12113376-12113395 | Msa0395460:intron | 55.0% | |
| !! | GACATGGCCATTCTGAGGCT+GGG | - | chr3_2:12113381-12113400 | Msa0395460:intron | 55.0% |
| !! | ACATGGCCATTCTGAGGCTG+GGG | - | chr3_2:12113382-12113401 | Msa0395460:intron | 55.0% |
| ATCGCGCCGTTCCAAAGAGA+AGG | - | chr3_2:12113411-12113430 | Msa0395460:intron | 55.0% | |
| ! | GTACTGGTAGGGGAAGAGGA+AGG | - | chr3_2:12113801-12113820 | Msa0395460:intron | 55.0% |
| ACTGGTAGGGGAAGAGGAAG+GGG | - | chr3_2:12113803-12113822 | Msa0395460:intron | 55.0% | |
| AGAGGAAGGGGTAGAGGAAG+AGG | - | chr3_2:12113815-12113834 | Msa0395460:intron | 55.0% | |
| TGCAGCAGGTTCAGGCAATG+GGG | + | chr3_2:12114107-12114126 | None:intergenic | 55.0% | |
| GTTGCAGCAGGTTCAGGCAA+TGG | + | chr3_2:12114109-12114128 | None:intergenic | 55.0% | |
| CTGCAGCTTGCAGCAAACCT+TGG | - | chr3_2:12114199-12114218 | Msa0395460:intron | 55.0% | |
| ! | TGGGTTGCGGGGGTGTGAAT+TGG | - | chr3_2:12110211-12110230 | Msa0395460:CDS | 60.0% |
| ! | GGGTTGCGGGGGTGTGAATT+GGG | - | chr3_2:12110212-12110231 | Msa0395460:CDS | 60.0% |
| ! | TTGCGGGGGTGTGAATTGGG+TGG | - | chr3_2:12110215-12110234 | Msa0395460:CDS | 60.0% |
| GCTCACGTAGACACCGACAC+CGG | - | chr3_2:12110301-12110320 | Msa0395460:CDS | 60.0% | |
| !! | GGACATGGCCATTCTGAGGC+TGG | - | chr3_2:12113380-12113399 | Msa0395460:intron | 60.0% |
| CATCAGCCCCAGCCTCAGAA+TGG | + | chr3_2:12113391-12113410 | None:intergenic | 60.0% | |
| !! | CAGCTTGAGTTGGGCCACAC+TGG | - | chr3_2:12113776-12113795 | Msa0395460:intron | 60.0% |
| !! | CTTGAGTTGGGCCACACTGG+CGG | - | chr3_2:12113779-12113798 | Msa0395460:intron | 60.0% |
| !! | CCACACTGGCGGTACTGGTA+GGG | - | chr3_2:12113790-12113809 | Msa0395460:intron | 60.0% |
| !! | CACACTGGCGGTACTGGTAG+GGG | - | chr3_2:12113791-12113810 | Msa0395460:intron | 60.0% |
| AGGGGAAGAGGAAGGGGTAG+AGG | - | chr3_2:12113809-12113828 | Msa0395460:intron | 60.0% | |
| TCAGGCAATGGGGCCTGAGT+AGG | + | chr3_2:12114097-12114116 | None:intergenic | 60.0% | |
| TTGGGCCACACTGGCGGTAC+TGG | - | chr3_2:12113785-12113804 | Msa0395460:intron | 65.0% | |
| !! | GCCACACTGGCGGTACTGGT+AGG | - | chr3_2:12113789-12113808 | Msa0395460:intron | 65.0% |
| CCCTACCAGTACCGCCAGTG+TGG | + | chr3_2:12113793-12113812 | None:intergenic | 65.0% | |
| !! | GGCGGTACTGGTAGGGGAAG+AGG | - | chr3_2:12113797-12113816 | Msa0395460:intron | 65.0% |
| AGGGGTAGAGGAAGAGGCCG+CGG | - | chr3_2:12113821-12113840 | Msa0395460:intron | 65.0% | |
| AGAGGAAGAGGCCGCGGTCG+AGG | - | chr3_2:12113827-12113846 | Msa0395460:intron | 70.0% | |
| GAGGAAGAGGCCGCGGTCGA+GGG | - | chr3_2:12113828-12113847 | Msa0395460:intron | 70.0% | |
| AGGAAGAGGCCGCGGTCGAG+GGG | - | chr3_2:12113829-12113848 | Msa0395460:intron | 70.0% | |
| CAGTTCGAGCCCCTCGACCG+CGG | + | chr3_2:12113841-12113860 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 12109778 | 12114544 | 12109778 | ID=Msa0395460;Name=Msa0395460 |
| chr3_2 | mRNA | 12109778 | 12114544 | 12109778 | ID=Msa0395460-mRNA-1;Parent=Msa0395460;Name=Msa0395460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=244|1|1|1|1|1|6|274|292 |
| chr3_2 | exon | 12109778 | 12110543 | 12109778 | ID=Msa0395460-mRNA-1:exon:2864;Parent=Msa0395460-mRNA-1 |
| chr3_2 | exon | 12110741 | 12110798 | 12110741 | ID=Msa0395460-mRNA-1:exon:2863;Parent=Msa0395460-mRNA-1 |
| chr3_2 | exon | 12110890 | 12111018 | 12110890 | ID=Msa0395460-mRNA-1:exon:2862;Parent=Msa0395460-mRNA-1 |
| chr3_2 | exon | 12111516 | 12111609 | 12111516 | ID=Msa0395460-mRNA-1:exon:2861;Parent=Msa0395460-mRNA-1 |
| chr3_2 | exon | 12111703 | 12111775 | 12111703 | ID=Msa0395460-mRNA-1:exon:2860;Parent=Msa0395460-mRNA-1 |
| chr3_2 | exon | 12114268 | 12114544 | 12114268 | ID=Msa0395460-mRNA-1:exon:2859;Parent=Msa0395460-mRNA-1 |
| chr3_2 | five_prime_UTR | 12114301 | 12114544 | 12114301 | ID=Msa0395460-mRNA-1:five_prime_utr;Parent=Msa0395460-mRNA-1 |
| chr3_2 | CDS | 12114268 | 12114300 | 12114268 | ID=Msa0395460-mRNA-1:cds;Parent=Msa0395460-mRNA-1 |
| chr3_2 | CDS | 12111703 | 12111775 | 12111703 | ID=Msa0395460-mRNA-1:cds;Parent=Msa0395460-mRNA-1 |
| chr3_2 | CDS | 12111516 | 12111609 | 12111516 | ID=Msa0395460-mRNA-1:cds;Parent=Msa0395460-mRNA-1 |
| chr3_2 | CDS | 12110890 | 12111018 | 12110890 | ID=Msa0395460-mRNA-1:cds;Parent=Msa0395460-mRNA-1 |
| chr3_2 | CDS | 12110741 | 12110798 | 12110741 | ID=Msa0395460-mRNA-1:cds;Parent=Msa0395460-mRNA-1 |
| chr3_2 | CDS | 12110052 | 12110543 | 12110052 | ID=Msa0395460-mRNA-1:cds;Parent=Msa0395460-mRNA-1 |
| chr3_2 | three_prime_UTR | 12109778 | 12110051 | 12109778 | ID=Msa0395460-mRNA-1:three_prime_utr;Parent=Msa0395460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
