AlfalfaGEDB | Msa0395760

M. sativa cultivar zhongmu-4 / Msa0395760

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010114 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395760	XP_003598418.1	98.901	91	1	0	1	91	1	91	1.96e-60	189

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395760	sp\|Q58FS3\|RAD_ANTMA	64.894	94	29	3	1	91	1	93	6.33e-37	122

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395760	G7IVT6	98.901	91	1	0	1	91	1	91	9.35e-61	189

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TFs/TRs:

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Gene ID	Type	Classification
Msa0395760	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395760	MtrunA17_Chr3g0081631	98.901	91	1	0	1	91	1	91	1.80e-64	189
Msa0395760	MtrunA17_Chr7g0255841	70.000	80	23	1	12	91	14	92	2.71e-36	118
Msa0395760	MtrunA17_Chr3g0141601	58.242	91	33	2	4	90	1	90	6.43e-32	107
Msa0395760	MtrunA17_Chr1g0155181	58.621	87	29	3	4	84	1	86	1.16e-30	103
Msa0395760	MtrunA17_Chr6g0449111	62.667	75	27	1	1	75	1	74	1.37e-30	103
Msa0395760	MtrunA17_Chr3g0144631	64.198	81	22	2	1	75	1	80	5.22e-30	102
Msa0395760	MtrunA17_Chr8g0373111	56.522	69	28	1	7	75	2	68	1.07e-23	85.5
Msa0395760	MtrunA17_Chr8g0373121	56.522	69	28	1	7	75	2	68	1.07e-23	85.5
Msa0395760	MtrunA17_Chr8g0373131	57.353	68	27	1	7	74	2	67	1.16e-23	85.5
Msa0395760	MtrunA17_Chr5g0404301	59.375	64	24	1	8	71	2	63	3.86e-23	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395760	AT4G39250.1	60.227	88	28	2	10	91	14	100	2.09e-34	114
Msa0395760	AT2G21650.1	61.798	89	26	2	10	91	14	101	2.43e-34	114
Msa0395760	AT1G75250.2	53.684	95	35	3	3	90	5	97	1.14e-27	96.7
Msa0395760	AT1G75250.1	60.811	74	28	1	3	76	5	77	2.32e-26	94.4
Msa0395760	AT1G19510.1	51.724	87	33	3	13	91	15	100	2.41e-22	83.6
Msa0395760	AT2G18328.1	63.492	63	22	1	13	75	14	75	4.87e-22	82.0
Msa0395760	AT4G36570.1	68.889	45	13	1	10	54	12	55	8.54e-17	68.2
Msa0395760	AT5G58900.1	52.000	75	32	2	2	73	23	96	1.28e-16	72.8
Msa0395760	AT5G05790.2	49.351	77	36	2	7	81	28	103	1.30e-16	72.4
Msa0395760	AT5G05790.1	49.351	77	36	2	7	81	28	103	1.30e-16	72.4

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Find 57 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCTTCTAAGGGATGTT+AGG	0.467379	3_2:+12851097	Msa0395760:CDS
AAGAAGAATTAGAGGGCGTG+TGG	0.560374	3_2:-12850706	None:intergenic
AAGAATAAGGCTTAAGGAAG+AGG	0.466977	3_2:-12850768	None:intergenic
AAGGGTGTTCAAAATGTTGA+AGG	0.459490	3_2:-12850800	None:intergenic
AAGTTAACAAGATAAGCAAA+AGG	0.517696	3_2:-12850819	None:intergenic
AATGTTGCTCAAGCTGTTGG+TGG	0.546053	3_2:+12851039	Msa0395760:CDS
ACACTATGAACACCTTCTAA+GGG	0.610400	3_2:+12851089	Msa0395760:CDS
ACCAACAGCTTGAGCAACAT+TGG	0.499603	3_2:-12851037	None:intergenic
AGAATTAGAGGGCGTGTGGA+AGG	0.485502	3_2:-12850702	None:intergenic
AGAGGGCGTGTGGAAGGTGT+GGG	0.464590	3_2:-12850696	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTCTAAAGAATAAGGCTTA+AGG	-	chr3_2:12850777-12850796	None:intergenic	30.0%
CACAACCTTCAAAATCTTAA+GGG	+	chr3_2:12850843-12850862	Msa0395760:five_prime_UTR	30.0%
TTCCCAAATTACAAGAACAT+TGG	+	chr3_2:12851144-12851163	Msa0395760:CDS	30.0%
CTCCAATGTTCTTGTAATTT+GGG	-	chr3_2:12851149-12851168	None:intergenic	30.0%
ACGCTGAATAAGTATTATGA+AGG	-	chr3_2:12851258-12851277	None:intergenic	30.0%
ATCTCTCAAGCATATAAAAG+TGG	+	chr3_2:12851572-12851591	Msa0395760:intron	30.0%
TATTCCAAATGACAAGAAAG+GGG	-	chr3_2:12852016-12852035	None:intergenic	30.0%
GATATTCCAAATGACAAGAA+AGG	-	chr3_2:12852018-12852037	None:intergenic	30.0%
ATTATAGTAAGGTACACATG+TGG	-	chr3_2:12852102-12852121	None:intergenic	30.0%
TGTCTAAAGAATAAGGCTTA+AGG	-	chr3_2:12850777-12850796	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	12850686	12852222	12850686	ID=Msa0395760;Name=Msa0395760
chr3_2	mRNA	12850686	12852222	12850686	ID=Msa0395760-mRNA-1;Parent=Msa0395760;Name=Msa0395760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=251\|1\|1\|1\|1\|1\|2\|383\|91
chr3_2	exon	12850686	12851187	12850686	ID=Msa0395760-mRNA-1:exon:2988;Parent=Msa0395760-mRNA-1
chr3_2	exon	12851815	12852222	12851815	ID=Msa0395760-mRNA-1:exon:2989;Parent=Msa0395760-mRNA-1
chr3_2	five_prime_UTR	12850686	12850936	12850686	ID=Msa0395760-mRNA-1:five_prime_utr;Parent=Msa0395760-mRNA-1
chr3_2	CDS	12850937	12851187	12850937	ID=Msa0395760-mRNA-1:cds;Parent=Msa0395760-mRNA-1
chr3_2	CDS	12851815	12851839	12851815	ID=Msa0395760-mRNA-1:cds;Parent=Msa0395760-mRNA-1
chr3_2	three_prime_UTR	12851840	12852222	12851840	ID=Msa0395760-mRNA-1:three_prime_utr;Parent=Msa0395760-mRNA-1

Gene Sequence	>Msa0395760 ATGGCATCAATGTCAGCATCTGGTTCATGGAGTGCTAAGGACAATAAAGCATTTGAAAGGGCACTAGCTGTTTTTGATAAAGACACACCTGACCGTTGGTCCAATGTTGCTCAAGCTGTTGGTGGTGGAAAGACTCCTGAGGATGTTAAGAGACACTATGAACACCTTCTAAGGGATGTTAGGCATATTGAATCAGGTCATGTTGCATTCCCAAATTACAAGAACATTGGAGGCTATGATGAGGAAAAAAGGTTGAGAAACCTGAAGCTCCAGTAA
Protein sequence	>Msa0395760 MASMSASGSWSAKDNKAFERALAVFDKDTPDRWSNVAQAVGGGKTPEDVKRHYEHLLRDVRHIESGHVAFPNYKNIGGYDEEKRLRNLKLQ*