Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395990 | GAU28263.1 | 86.228 | 334 | 33 | 5 | 6 | 328 | 3 | 334 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395990 | sp|Q9LJG8|ASIL2_ARATH | 35.772 | 123 | 67 | 2 | 29 | 139 | 61 | 183 | 4.81e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395990 | A0A2Z6ME36 | 86.228 | 334 | 33 | 5 | 6 | 328 | 3 | 334 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0395990 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395990 | MtrunA17_Chr3g0082261 | 91.045 | 335 | 11 | 7 | 1 | 328 | 1 | 323 | 0.0 | 552 |
| Msa0395990 | MtrunA17_Chr1g0164461 | 89.394 | 198 | 6 | 6 | 1 | 195 | 1 | 186 | 9.16e-110 | 317 |
| Msa0395990 | MtrunA17_Chr1g0164431 | 92.929 | 99 | 3 | 1 | 234 | 328 | 1 | 99 | 8.92e-57 | 179 |
| Msa0395990 | MtrunA17_Chr2g0283871 | 36.290 | 124 | 71 | 4 | 39 | 155 | 18 | 140 | 1.40e-16 | 79.3 |
| Msa0395990 | MtrunA17_Chr8g0344681 | 26.282 | 312 | 160 | 13 | 31 | 308 | 58 | 333 | 3.57e-16 | 78.6 |
| Msa0395990 | MtrunA17_Chr1g0179531 | 40.816 | 98 | 49 | 3 | 38 | 129 | 127 | 221 | 2.21e-15 | 76.6 |
| Msa0395990 | MtrunA17_Chr4g0041151 | 24.638 | 276 | 186 | 7 | 42 | 308 | 29 | 291 | 8.44e-14 | 70.9 |
| Msa0395990 | MtrunA17_Chr5g0402321 | 33.036 | 112 | 66 | 3 | 44 | 146 | 22 | 133 | 4.56e-12 | 64.7 |
| Msa0395990 | MtrunA17_Chr4g0066271 | 32.673 | 101 | 61 | 1 | 38 | 131 | 111 | 211 | 5.36e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395990 | AT3G54390.1 | 59.386 | 293 | 89 | 6 | 37 | 327 | 31 | 295 | 2.74e-102 | 302 |
| Msa0395990 | AT3G54390.2 | 59.386 | 293 | 89 | 6 | 37 | 327 | 47 | 311 | 3.47e-102 | 303 |
| Msa0395990 | AT3G10030.1 | 38.793 | 116 | 60 | 3 | 16 | 126 | 137 | 246 | 1.32e-17 | 84.0 |
| Msa0395990 | AT3G10030.2 | 37.815 | 119 | 63 | 3 | 16 | 129 | 137 | 249 | 1.91e-17 | 83.6 |
| Msa0395990 | AT3G14180.1 | 35.772 | 123 | 67 | 2 | 29 | 139 | 61 | 183 | 4.89e-16 | 79.0 |
| Msa0395990 | AT3G24860.1 | 40.698 | 86 | 47 | 2 | 44 | 128 | 65 | 147 | 5.98e-14 | 72.0 |
| Msa0395990 | AT3G58630.2 | 25.430 | 291 | 176 | 10 | 40 | 308 | 22 | 293 | 2.28e-13 | 70.1 |
| Msa0395990 | AT3G58630.1 | 25.430 | 291 | 176 | 10 | 40 | 308 | 22 | 293 | 2.59e-13 | 70.1 |
| Msa0395990 | AT3G11100.1 | 43.333 | 90 | 49 | 2 | 40 | 129 | 18 | 105 | 8.81e-13 | 67.8 |
| Msa0395990 | AT2G44730.1 | 33.673 | 98 | 58 | 1 | 38 | 128 | 58 | 155 | 1.14e-11 | 65.5 |
Find 62 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACACTGTGTTTGTGTCTT+TGG | 0.214518 | 3_2:-13466962 | None:intergenic |
| TTGAAGCATATGAATCAAAA+TGG | 0.232049 | 3_2:+13466852 | Msa0395990:CDS |
| AGAAAACAAAACAATATTAT+TGG | 0.287424 | 3_2:+13466764 | Msa0395990:CDS |
| TAATTGACTTTAATTGTAGA+TGG | 0.322551 | 3_2:+13469168 | Msa0395990:three_prime_UTR |
| ATGGATTCTTGTTAGCTATA+TGG | 0.326116 | 3_2:-13468686 | None:intergenic |
| TTCAATTAATTAACAAATGA+AGG | 0.338320 | 3_2:+13469208 | Msa0395990:three_prime_UTR |
| AGCAATTTCAAGTTGTGTAT+TGG | 0.360079 | 3_2:-13468973 | None:intergenic |
| AGAGAGAGCCACTAGCATTA+TGG | 0.366176 | 3_2:-13466487 | None:intergenic |
| ATCTACAATTAAAGTCAATT+AGG | 0.382284 | 3_2:-13469166 | None:intergenic |
| GTTGATTCATCATTGAGAAT+TGG | 0.394877 | 3_2:+13469032 | Msa0395990:CDS |
| TGGTCATCTCTTCACTAGTT+AGG | 0.401307 | 3_2:-13469121 | None:intergenic |
| GTAGATGGAGGATATTATTA+TGG | 0.406791 | 3_2:+13466663 | Msa0395990:five_prime_UTR |
| ACTAAACAATAATCAAGGTT+TGG | 0.408425 | 3_2:+13467111 | Msa0395990:CDS |
| AATATTATTGGTAGTGGAAG+TGG | 0.411833 | 3_2:+13466776 | Msa0395990:CDS |
| AAGCGCCGGCGTGCTGCTAT+CGG | 0.427506 | 3_2:-13468715 | None:intergenic |
| AGATTATAATTATTGTCATA+TGG | 0.428312 | 3_2:-13469141 | None:intergenic |
| CAAAACTCAAAGGACAAGAT+TGG | 0.436569 | 3_2:+13466891 | Msa0395990:CDS |
| CAAAACTCACATGGATCAAA+TGG | 0.444369 | 3_2:+13467232 | Msa0395990:CDS |
| CTAGTTCAGATGTTTCATCT+TGG | 0.449491 | 3_2:+13467029 | Msa0395990:CDS |
| TGAGGCAAAGAGAGGAGAAA+TGG | 0.461965 | 3_2:+13468926 | Msa0395990:CDS |
| CAAAACAATATTATTGGTAG+TGG | 0.466587 | 3_2:+13466770 | Msa0395990:CDS |
| GGTGGAGCAACAACCGTACT+AGG | 0.467128 | 3_2:-13467196 | None:intergenic |
| GGCTAGCAGAGGTGGTAGTA+AGG | 0.468988 | 3_2:+13468847 | Msa0395990:CDS |
| GGTGATTCTTGTTGCGATGT+TGG | 0.477873 | 3_2:-13466740 | None:intergenic |
| GATCTTCTTCTACGTGGGAC+AGG | 0.489537 | 3_2:+13467070 | Msa0395990:CDS |
| AAAACTCAAAGGACAAGATT+GGG | 0.491011 | 3_2:+13466892 | Msa0395990:CDS |
| TGGGAATAGCAGAAAGCATA+AGG | 0.497144 | 3_2:+13468823 | Msa0395990:CDS |
| TGAAGCATATGAATCAAAAT+GGG | 0.499206 | 3_2:+13466853 | Msa0395990:CDS |
| TTGTTAATTAATTGAAGAGA+AGG | 0.502593 | 3_2:-13469201 | None:intergenic |
| CATGAGGCTAAGAATATGAA+AGG | 0.514172 | 3_2:-13466573 | None:intergenic |
| GAGGCAAAAGAAAGAAACAA+TGG | 0.514233 | 3_2:+13468803 | Msa0395990:CDS |
| AGATTGAGTCCATGAAGAAA+AGG | 0.517431 | 3_2:+13466990 | Msa0395990:CDS |
| AAGGTCAGAACAAACAAGAA+TGG | 0.526165 | 3_2:+13468866 | Msa0395990:CDS |
| AGGCAAAAGAAAGAAACAAT+GGG | 0.536131 | 3_2:+13468804 | Msa0395990:CDS |
| TATAGCTAACAAGAATCCAT+TGG | 0.536715 | 3_2:+13468689 | Msa0395990:CDS |
| GACTTGATCTTCTTCTACGT+GGG | 0.537726 | 3_2:+13467065 | Msa0395990:CDS |
| ATACACAACTTGAAATTGCT+AGG | 0.547805 | 3_2:+13468976 | Msa0395990:CDS |
| ATTCTTGTTGCGATGTTGGA+GGG | 0.548014 | 3_2:-13466736 | None:intergenic |
| CATAAGGTGGCTAGCAGAGG+TGG | 0.548999 | 3_2:+13468839 | Msa0395990:CDS |
| TCAATTAATTAACAAATGAA+GGG | 0.550010 | 3_2:+13469209 | Msa0395990:three_prime_UTR |
| CAGAGAACAATAACAACAAG+AGG | 0.552289 | 3_2:+13468784 | Msa0395990:CDS |
| ACAACACTAAACAATAATCA+AGG | 0.555763 | 3_2:+13467106 | Msa0395990:CDS |
| ATAAAATTCCATAATGCTAG+TGG | 0.556361 | 3_2:+13466479 | Msa0395990:five_prime_UTR |
| GATTCTTGTTGCGATGTTGG+AGG | 0.569230 | 3_2:-13466737 | None:intergenic |
| GAAGATGAGAGTTGAAGCTG+AGG | 0.581651 | 3_2:+13468908 | Msa0395990:CDS |
| AAGCATAAGGTGGCTAGCAG+AGG | 0.587151 | 3_2:+13468836 | Msa0395990:CDS |
| GTGCTGCTATCGGTTTCCAA+TGG | 0.590073 | 3_2:-13468705 | None:intergenic |
| AAAAGAGATGAATGGAGTGA+AGG | 0.593095 | 3_2:+13466812 | Msa0395990:CDS |
| ATGAGGCTAAGAATATGAAA+GGG | 0.599291 | 3_2:-13466572 | None:intergenic |
| AGAAATAGAGCAAAACTCAA+AGG | 0.604235 | 3_2:+13466881 | Msa0395990:CDS |
| GTTGAAGCTGAGGCAAAGAG+AGG | 0.612939 | 3_2:+13468918 | Msa0395990:CDS |
| ACAACTGCTCAAAACTCACA+TGG | 0.614879 | 3_2:+13467223 | Msa0395990:CDS |
| AGACTTGATCTTCTTCTACG+TGG | 0.623699 | 3_2:+13467064 | Msa0395990:CDS |
| TGGTGTTGATAAATTAGTCA+AGG | 0.628166 | 3_2:+13467252 | Msa0395990:CDS |
| TGGAAGAAGCTAATGATATG+TGG | 0.630070 | 3_2:+13469052 | Msa0395990:exon |
| TCAGCCACTAGCTCCTAGTA+CGG | 0.644324 | 3_2:+13467183 | Msa0395990:CDS |
| GGAAACCGATAGCAGCACGC+CGG | 0.658154 | 3_2:+13468710 | Msa0395990:CDS |
| ACAACCGTACTAGGAGCTAG+TGG | 0.669765 | 3_2:-13467187 | None:intergenic |
| AGATCAAGTCTAGAATACAA+AGG | 0.687202 | 3_2:-13467052 | None:intergenic |
| GAATAGCAGAAAGCATAAGG+TGG | 0.715377 | 3_2:+13468826 | Msa0395990:CDS |
| GCATGTGACATAACAAGTGG+TGG | 0.722377 | 3_2:-13467145 | None:intergenic |
| TGTGCATGTGACATAACAAG+TGG | 0.766342 | 3_2:-13467148 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTATTTTATTTTT+AGG | + | chr3_2:13467409-13467428 | Msa0395990:intron | 0.0% |
| !! | AAAAAAATAAAATAAAAAAT+TGG | - | chr3_2:13467651-13467670 | None:intergenic | 0.0% |
| !!! | TTTAAATATTGATAGTATAA+AGG | + | chr3_2:13468404-13468423 | Msa0395990:intron | 10.0% |
| !!! | ATAATATTGTTTTGTTTTCT+TGG | - | chr3_2:13466764-13466783 | None:intergenic | 15.0% |
| !! | AGAAAACAAAACAATATTAT+TGG | + | chr3_2:13466764-13466783 | Msa0395990:CDS | 15.0% |
| !!! | AGACTTTAAAAAAGAAAATT+TGG | + | chr3_2:13467450-13467469 | Msa0395990:intron | 15.0% |
| !! | TTGTTAAATATTAAAGTCAA+AGG | + | chr3_2:13467619-13467638 | Msa0395990:intron | 15.0% |
| !!! | ATTTAATTTAAAGAGTTTGA+TGG | + | chr3_2:13467860-13467879 | Msa0395990:intron | 15.0% |
| !! | TTAATGCATATATAGTATAA+TGG | - | chr3_2:13468091-13468110 | None:intergenic | 15.0% |
| !! | TAGTATATGGTTAAAATAAA+TGG | - | chr3_2:13468139-13468158 | None:intergenic | 15.0% |
| !! | GATAGTGAAATATATATAAT+TGG | - | chr3_2:13468549-13468568 | None:intergenic | 15.0% |
| !! | AGATTATAATTATTGTCATA+TGG | - | chr3_2:13469144-13469163 | None:intergenic | 15.0% |
| !! | TTCAATTAATTAACAAATGA+AGG | + | chr3_2:13469208-13469227 | Msa0395990:three_prime_UTR | 15.0% |
| !! | TCAATTAATTAACAAATGAA+GGG | + | chr3_2:13469209-13469228 | Msa0395990:three_prime_UTR | 15.0% |
| !! | GTTAAAAAGTTTATAGTAGA+TGG | + | chr3_2:13466648-13466667 | Msa0395990:five_prime_UTR | 20.0% |
| !!! | AAGCAATTTTATAATTTGGA+AGG | - | chr3_2:13467369-13467388 | None:intergenic | 20.0% |
| !!! | GAACAAGCAATTTTATAATT+TGG | - | chr3_2:13467373-13467392 | None:intergenic | 20.0% |
| !! | ATTATAAAATTGCTTGTTCA+AGG | + | chr3_2:13467374-13467393 | Msa0395990:intron | 20.0% |
| !!! | TATTTTTAGGACTAAAAAGT+AGG | + | chr3_2:13467422-13467441 | Msa0395990:intron | 20.0% |
| !! | AAAATTGACGACTAAAAATA+AGG | + | chr3_2:13467543-13467562 | Msa0395990:intron | 20.0% |
| !! | TCAAAAAAAACAATGATCTT+AGG | - | chr3_2:13467775-13467794 | None:intergenic | 20.0% |
| !!! | AAGATCATTGTTTTTTTTGA+AGG | + | chr3_2:13467775-13467794 | Msa0395990:intron | 20.0% |
| !!! | AGATCATTGTTTTTTTTGAA+GGG | + | chr3_2:13467776-13467795 | Msa0395990:intron | 20.0% |
| !! | TATAATCTAAAGAAAATGTG+AGG | + | chr3_2:13467829-13467848 | Msa0395990:intron | 20.0% |
| !! | ATAATAAGCAAATTGTTAAG+TGG | + | chr3_2:13468051-13468070 | Msa0395990:intron | 20.0% |
| !! | TAATAAGCAAATTGTTAAGT+GGG | + | chr3_2:13468052-13468071 | Msa0395990:intron | 20.0% |
| !!! | ACTATCAATATTTAAAGTCT+TGG | - | chr3_2:13468400-13468419 | None:intergenic | 20.0% |
| !! | ATAGTAAACTCAAATATCTT+TGG | - | chr3_2:13468496-13468515 | None:intergenic | 20.0% |
| !! | ATTTATGATTTCATATTGAC+AGG | + | chr3_2:13468635-13468654 | Msa0395990:intron | 20.0% |
| !! | ATCTACAATTAAAGTCAATT+AGG | - | chr3_2:13469169-13469188 | None:intergenic | 20.0% |
| !!! | TAATTGACTTTAATTGTAGA+TGG | + | chr3_2:13469168-13469187 | Msa0395990:three_prime_UTR | 20.0% |
| !! | TTGTTAATTAATTGAAGAGA+AGG | - | chr3_2:13469204-13469223 | None:intergenic | 20.0% |
| ! | AAGAATGGCTATGAAAAAAA+TGG | - | chr3_2:13466429-13466448 | None:intergenic | 25.0% |
| ! | AAAAAGGGAAAAGAAAAGAA+TGG | - | chr3_2:13466444-13466463 | None:intergenic | 25.0% |
| ! | ATAAAATTCCATAATGCTAG+TGG | + | chr3_2:13466479-13466498 | Msa0395990:five_prime_UTR | 25.0% |
| ! | AAAAAGTTTATAGTAGATGG+AGG | + | chr3_2:13466651-13466670 | Msa0395990:five_prime_UTR | 25.0% |
| ! | CAAAACAATATTATTGGTAG+TGG | + | chr3_2:13466770-13466789 | Msa0395990:CDS | 25.0% |
| ! | TTGAAGCATATGAATCAAAA+TGG | + | chr3_2:13466852-13466871 | Msa0395990:CDS | 25.0% |
| ! | TGAAGCATATGAATCAAAAT+GGG | + | chr3_2:13466853-13466872 | Msa0395990:CDS | 25.0% |
| ! | ACAACACTAAACAATAATCA+AGG | + | chr3_2:13467106-13467125 | Msa0395990:CDS | 25.0% |
| ! | ACTAAACAATAATCAAGGTT+TGG | + | chr3_2:13467111-13467130 | Msa0395990:CDS | 25.0% |
| !! | GTCGTCAATTTTACAAAAAT+GGG | - | chr3_2:13467535-13467554 | None:intergenic | 25.0% |
| !! | AGTCGTCAATTTTACAAAAA+TGG | - | chr3_2:13467536-13467555 | None:intergenic | 25.0% |
| ! | TTCACATGCATAATAGTATA+TGG | - | chr3_2:13468152-13468171 | None:intergenic | 25.0% |
| ! | ATGCATAATATATGCAAGAT+AGG | + | chr3_2:13468254-13468273 | Msa0395990:intron | 25.0% |
| ! | TGCATAATATATGCAAGATA+GGG | + | chr3_2:13468255-13468274 | Msa0395990:intron | 25.0% |
| ! | TTTGGAAGATATTAAAGTCT+TGG | - | chr3_2:13468478-13468497 | None:intergenic | 25.0% |
| ! | AATTCCAAGAAACAAAAAAC+AGG | - | chr3_2:13469240-13469259 | None:intergenic | 25.0% |
| ATGAGGCTAAGAATATGAAA+GGG | - | chr3_2:13466575-13466594 | None:intergenic | 30.0% | |
| GTAGATGGAGGATATTATTA+TGG | + | chr3_2:13466663-13466682 | Msa0395990:five_prime_UTR | 30.0% | |
| !! | AATATTATTGGTAGTGGAAG+TGG | + | chr3_2:13466776-13466795 | Msa0395990:CDS | 30.0% |
| AGAGACTAAAAAGAGATGAA+TGG | + | chr3_2:13466804-13466823 | Msa0395990:CDS | 30.0% | |
| AGAAATAGAGCAAAACTCAA+AGG | + | chr3_2:13466881-13466900 | Msa0395990:CDS | 30.0% | |
| AAAACTCAAAGGACAAGATT+GGG | + | chr3_2:13466892-13466911 | Msa0395990:CDS | 30.0% | |
| ! | TGATCTATACCTTTTCTTCA+TGG | - | chr3_2:13467002-13467021 | None:intergenic | 30.0% |
| ! | AGATCAAGTCTAGAATACAA+AGG | - | chr3_2:13467055-13467074 | None:intergenic | 30.0% |
| !!! | TAATCAAGGTTTGGTTTTGT+TGG | + | chr3_2:13467120-13467139 | Msa0395990:CDS | 30.0% |
| !! | TGGTGTTGATAAATTAGTCA+AGG | + | chr3_2:13467252-13467271 | Msa0395990:CDS | 30.0% |
| !! | AGTTTCTTATTGCTTTTCCT+TGG | + | chr3_2:13467963-13467982 | Msa0395990:intron | 30.0% |
| GCATAATATATGCAAGATAG+GGG | + | chr3_2:13468256-13468275 | Msa0395990:intron | 30.0% | |
| ATAGGGGAAAATACATATGT+TGG | + | chr3_2:13468272-13468291 | Msa0395990:intron | 30.0% | |
| TGTACATTAGTGCTTTACTT+AGG | + | chr3_2:13468297-13468316 | Msa0395990:intron | 30.0% | |
| ATAGAATGCTGCTGAATAAT+TGG | + | chr3_2:13468330-13468349 | Msa0395990:intron | 30.0% | |
| ! | TGATAGTATAAAGGTGCAAA+AGG | + | chr3_2:13468413-13468432 | Msa0395990:intron | 30.0% |
| GGTTTATATGACTTTACCAT+GGG | - | chr3_2:13468442-13468461 | None:intergenic | 30.0% | |
| AGGTTTATATGACTTTACCA+TGG | - | chr3_2:13468443-13468462 | None:intergenic | 30.0% | |
| ! | TATTAAAGTCTTGGTCTTCA+TGG | - | chr3_2:13468469-13468488 | None:intergenic | 30.0% |
| ATGGATTCTTGTTAGCTATA+TGG | - | chr3_2:13468689-13468708 | None:intergenic | 30.0% | |
| TATAGCTAACAAGAATCCAT+TGG | + | chr3_2:13468689-13468708 | Msa0395990:CDS | 30.0% | |
| AGGCAAAAGAAAGAAACAAT+GGG | + | chr3_2:13468804-13468823 | Msa0395990:CDS | 30.0% | |
| !! | AGCAATTTCAAGTTGTGTAT+TGG | - | chr3_2:13468976-13468995 | None:intergenic | 30.0% |
| ATACACAACTTGAAATTGCT+AGG | + | chr3_2:13468976-13468995 | Msa0395990:CDS | 30.0% | |
| ! | GTTGATTCATCATTGAGAAT+TGG | + | chr3_2:13469032-13469051 | Msa0395990:CDS | 30.0% |
| !!! | TATGCCTGTTTTTTGTTTCT+TGG | + | chr3_2:13469233-13469252 | Msa0395990:three_prime_UTR | 30.0% |
| CATGAGGCTAAGAATATGAA+AGG | - | chr3_2:13466576-13466595 | None:intergenic | 35.0% | |
| !! | AAAGTTTTGTAGCTCACATG+AGG | - | chr3_2:13466592-13466611 | None:intergenic | 35.0% |
| AAAAGAGATGAATGGAGTGA+AGG | + | chr3_2:13466812-13466831 | Msa0395990:CDS | 35.0% | |
| CAAAACTCAAAGGACAAGAT+TGG | + | chr3_2:13466891-13466910 | Msa0395990:CDS | 35.0% | |
| TTACACTGTGTTTGTGTCTT+TGG | - | chr3_2:13466965-13466984 | None:intergenic | 35.0% | |
| AGATTGAGTCCATGAAGAAA+AGG | + | chr3_2:13466990-13467009 | Msa0395990:CDS | 35.0% | |
| CTAGTTCAGATGTTTCATCT+TGG | + | chr3_2:13467029-13467048 | Msa0395990:CDS | 35.0% | |
| ! | TTTTGAGCAGTTGTAATTGG+TGG | - | chr3_2:13467217-13467236 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAGCAGTTGTAAT+TGG | - | chr3_2:13467220-13467239 | None:intergenic | 35.0% |
| CAAAACTCACATGGATCAAA+TGG | + | chr3_2:13467232-13467251 | Msa0395990:CDS | 35.0% | |
| GCAATAAGAAACTCATTCGA+AGG | - | chr3_2:13467956-13467975 | None:intergenic | 35.0% | |
| AGACAAGCAAGACAATAACT+TGG | + | chr3_2:13467990-13468009 | Msa0395990:intron | 35.0% | |
| CAGAGAACAATAACAACAAG+AGG | + | chr3_2:13468784-13468803 | Msa0395990:CDS | 35.0% | |
| GAGGCAAAAGAAAGAAACAA+TGG | + | chr3_2:13468803-13468822 | Msa0395990:CDS | 35.0% | |
| AAGGTCAGAACAAACAAGAA+TGG | + | chr3_2:13468866-13468885 | Msa0395990:CDS | 35.0% | |
| TGGAAGAAGCTAATGATATG+TGG | + | chr3_2:13469052-13469071 | Msa0395990:exon | 35.0% | |
| ATTCTTGTTGCGATGTTGGA+GGG | - | chr3_2:13466739-13466758 | None:intergenic | 40.0% | |
| AGACTTGATCTTCTTCTACG+TGG | + | chr3_2:13467064-13467083 | Msa0395990:CDS | 40.0% | |
| GACTTGATCTTCTTCTACGT+GGG | + | chr3_2:13467065-13467084 | Msa0395990:CDS | 40.0% | |
| TGTGCATGTGACATAACAAG+TGG | - | chr3_2:13467151-13467170 | None:intergenic | 40.0% | |
| ACAACTGCTCAAAACTCACA+TGG | + | chr3_2:13467223-13467242 | Msa0395990:CDS | 40.0% | |
| GTCTTGCTTGTCTATAACCA+AGG | - | chr3_2:13467983-13468002 | None:intergenic | 40.0% | |
| CAAGCAAGACAATAACTTGG+AGG | + | chr3_2:13467993-13468012 | Msa0395990:intron | 40.0% | |
| TCTCATGAGCTTAACTCAGT+TGG | + | chr3_2:13468223-13468242 | Msa0395990:intron | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+AGG | + | chr3_2:13468228-13468247 | Msa0395990:intron | 40.0% |
| ! | AGTCTTGGTCTTCATGGTAA+AGG | - | chr3_2:13468463-13468482 | None:intergenic | 40.0% |
| ! | TGGGAATAGCAGAAAGCATA+AGG | + | chr3_2:13468823-13468842 | Msa0395990:CDS | 40.0% |
| ! | GAATAGCAGAAAGCATAAGG+TGG | + | chr3_2:13468826-13468845 | Msa0395990:CDS | 40.0% |
| TGGTCATCTCTTCACTAGTT+AGG | - | chr3_2:13469124-13469143 | None:intergenic | 40.0% | |
| AGAGAGAGCCACTAGCATTA+TGG | - | chr3_2:13466490-13466509 | None:intergenic | 45.0% | |
| GATTCTTGTTGCGATGTTGG+AGG | - | chr3_2:13466740-13466759 | None:intergenic | 45.0% | |
| GGTGATTCTTGTTGCGATGT+TGG | - | chr3_2:13466743-13466762 | None:intergenic | 45.0% | |
| GCATGTGACATAACAAGTGG+TGG | - | chr3_2:13467148-13467167 | None:intergenic | 45.0% | |
| AAGGTGCAAAAGGTTTCCCA+TGG | + | chr3_2:13468423-13468442 | Msa0395990:intron | 45.0% | |
| !! | TCTTTTTCGCTGTAAAGCGC+CGG | - | chr3_2:13468732-13468751 | None:intergenic | 45.0% |
| GAAGATGAGAGTTGAAGCTG+AGG | + | chr3_2:13468908-13468927 | Msa0395990:CDS | 45.0% | |
| TGAGGCAAAGAGAGGAGAAA+TGG | + | chr3_2:13468926-13468945 | Msa0395990:CDS | 45.0% | |
| !!! | TTTTATATAAAAAAGAAAAA+GGG | - | chr3_2:13466459-13466478 | None:intergenic | 5.0% |
| !!! | TTTTTATATAAAAAAGAAAA+AGG | - | chr3_2:13466460-13466479 | None:intergenic | 5.0% |
| GATCTTCTTCTACGTGGGAC+AGG | + | chr3_2:13467070-13467089 | Msa0395990:CDS | 50.0% | |
| TCAGCCACTAGCTCCTAGTA+CGG | + | chr3_2:13467183-13467202 | Msa0395990:CDS | 50.0% | |
| ACAACCGTACTAGGAGCTAG+TGG | - | chr3_2:13467190-13467209 | None:intergenic | 50.0% | |
| !! | GTGCTGCTATCGGTTTCCAA+TGG | - | chr3_2:13468708-13468727 | None:intergenic | 50.0% |
| AAGCATAAGGTGGCTAGCAG+AGG | + | chr3_2:13468836-13468855 | Msa0395990:CDS | 50.0% | |
| GTTGAAGCTGAGGCAAAGAG+AGG | + | chr3_2:13468918-13468937 | Msa0395990:CDS | 50.0% | |
| GGTGGAGCAACAACCGTACT+AGG | - | chr3_2:13467199-13467218 | None:intergenic | 55.0% | |
| CATAAGGTGGCTAGCAGAGG+TGG | + | chr3_2:13468839-13468858 | Msa0395990:CDS | 55.0% | |
| GGCTAGCAGAGGTGGTAGTA+AGG | + | chr3_2:13468847-13468866 | Msa0395990:CDS | 55.0% | |
| GGAAACCGATAGCAGCACGC+CGG | + | chr3_2:13468710-13468729 | Msa0395990:CDS | 60.0% | |
| !! | AAGCGCCGGCGTGCTGCTAT+CGG | - | chr3_2:13468718-13468737 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 13466426 | 13469302 | 13466426 | ID=Msa0395990;Name=Msa0395990 |
| chr3_2 | mRNA | 13466426 | 13469302 | 13466426 | ID=Msa0395990-mRNA-1;Parent=Msa0395990;Name=Msa0395990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=269|1|1|1|1|1|2|238|328 |
| chr3_2 | exon | 13466426 | 13467273 | 13466426 | ID=Msa0395990-mRNA-1:exon:3124;Parent=Msa0395990-mRNA-1 |
| chr3_2 | exon | 13468657 | 13469302 | 13468657 | ID=Msa0395990-mRNA-1:exon:3125;Parent=Msa0395990-mRNA-1 |
| chr3_2 | five_prime_UTR | 13466426 | 13466694 | 13466426 | ID=Msa0395990-mRNA-1:five_prime_utr;Parent=Msa0395990-mRNA-1 |
| chr3_2 | CDS | 13466695 | 13467273 | 13466695 | ID=Msa0395990-mRNA-1:cds;Parent=Msa0395990-mRNA-1 |
| chr3_2 | CDS | 13468657 | 13469064 | 13468657 | ID=Msa0395990-mRNA-1:cds;Parent=Msa0395990-mRNA-1 |
| chr3_2 | three_prime_UTR | 13469065 | 13469302 | 13469065 | ID=Msa0395990-mRNA-1:three_prime_utr;Parent=Msa0395990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
