Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396650 | XP_003598636.1 | 93.688 | 301 | 16 | 1 | 1 | 298 | 1 | 301 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396650 | sp|Q6P819|CNOT9_XENTR | 52.874 | 261 | 123 | 0 | 40 | 300 | 28 | 288 | 3.02e-90 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396650 | Q2HW81 | 93.688 | 301 | 16 | 1 | 1 | 298 | 1 | 301 | 0.0 | 567 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0396650 | TR | Rcd1-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396650 | MtrunA17_Chr7g0224601 | 61.716 | 303 | 109 | 3 | 12 | 307 | 2 | 304 | 1.05e-117 | 341 |
| Msa0396650 | MtrunA17_Chr1g0177151 | 62.205 | 254 | 95 | 1 | 1 | 254 | 1 | 253 | 5.85e-114 | 330 |
| Msa0396650 | MtrunA17_Chr8g0392781 | 52.464 | 345 | 126 | 3 | 1 | 307 | 1 | 345 | 2.18e-111 | 327 |
| Msa0396650 | MtrunA17_Chr3g0099561 | 60.219 | 274 | 108 | 1 | 35 | 307 | 26 | 299 | 1.96e-108 | 317 |
| Msa0396650 | MtrunA17_Chr5g0444621 | 62.381 | 210 | 79 | 0 | 67 | 276 | 52 | 261 | 7.15e-87 | 261 |
| Msa0396650 | MtrunA17_Chr6g0477171 | 64.286 | 196 | 70 | 0 | 59 | 254 | 48 | 243 | 1.01e-83 | 253 |
| Msa0396650 | MtrunA17_Chr3g0083811 | 95.690 | 116 | 5 | 0 | 183 | 298 | 1 | 116 | 5.81e-75 | 225 |
| Msa0396650 | MtrunA17_Chr3g0083821 | 73.874 | 111 | 29 | 0 | 51 | 161 | 10 | 120 | 3.08e-52 | 167 |
| Msa0396650 | MtrunA17_Chr5g0444631 | 66.038 | 53 | 18 | 0 | 109 | 161 | 4 | 56 | 1.35e-18 | 78.2 |
| Msa0396650 | MtrunA17_Chr6g0477181 | 57.627 | 59 | 22 | 1 | 1 | 56 | 1 | 59 | 6.25e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396650 | AT3G20800.1 | 56.993 | 286 | 123 | 0 | 22 | 307 | 26 | 311 | 1.75e-109 | 320 |
| Msa0396650 | AT5G12980.1 | 53.091 | 275 | 128 | 1 | 28 | 301 | 28 | 302 | 4.14e-98 | 291 |
| Msa0396650 | AT2G32550.2 | 35.510 | 245 | 142 | 5 | 50 | 282 | 67 | 307 | 8.59e-36 | 131 |
| Msa0396650 | AT2G32550.3 | 35.897 | 234 | 134 | 5 | 61 | 282 | 39 | 268 | 1.40e-35 | 130 |
| Msa0396650 | AT2G32550.1 | 35.648 | 216 | 123 | 5 | 79 | 282 | 2 | 213 | 8.94e-31 | 115 |
Find 51 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACTTGGACCTTTATTA+TGG | 0.221177 | 3_2:+15341504 | Msa0396650:CDS |
| CTCGCTTATCTCAAAATTGC+AGG | 0.298861 | 3_2:+15344428 | Msa0396650:CDS |
| AGAAATGAGATCCTTGTATC+AGG | 0.301701 | 3_2:-15342513 | None:intergenic |
| ATAGAAACCTATGACTTCTT+TGG | 0.317203 | 3_2:-15344065 | None:intergenic |
| AGGAATGGATATAAATATAA+AGG | 0.360461 | 3_2:-15342902 | None:intergenic |
| CAATGTTCTTGCACTACTTC+AGG | 0.367374 | 3_2:+15342283 | Msa0396650:CDS |
| GTTGCTAGTCTTGGAGTCAT+TGG | 0.372727 | 3_2:+15342965 | Msa0396650:CDS |
| TATATTAGACGATGATGGTT+TGG | 0.376298 | 3_2:+15344285 | Msa0396650:CDS |
| TTGGCATCTTTGAGCCTGTT+TGG | 0.379455 | 3_2:-15344570 | None:intergenic |
| CCAACAGTATTCCATAATAA+AGG | 0.383147 | 3_2:-15341515 | None:intergenic |
| GTTAACACCAAAGAAGTCAT+AGG | 0.420089 | 3_2:+15344058 | Msa0396650:CDS |
| TGTTGTTACATGAGAATGTT+GGG | 0.422120 | 3_2:+15345058 | Msa0396650:CDS |
| TCAGAGCACCAAGTTATTTG+AGG | 0.428345 | 3_2:+15341484 | Msa0396650:intron |
| TAACAACTTATCTTCCAAAC+AGG | 0.438040 | 3_2:+15344556 | Msa0396650:CDS |
| TTCTTTGTTGAGAGCGATTG+AGG | 0.439462 | 3_2:-15340305 | None:intergenic |
| GATTGTGAGGGAGAGAGATT+CGG | 0.440290 | 3_2:-15342248 | None:intergenic |
| ATTCTAACACCACTGATCAT+AGG | 0.442748 | 3_2:+15340357 | Msa0396650:CDS |
| AATTTGAGGGTTGCTAGTCT+TGG | 0.451958 | 3_2:+15342956 | Msa0396650:CDS |
| TAACACACTTTGAGAATTTG+AGG | 0.453125 | 3_2:+15342942 | Msa0396650:CDS |
| AAAATTATATTAGACGATGA+TGG | 0.467412 | 3_2:+15344280 | Msa0396650:CDS |
| CACCCTCACCTCGTTTGTTG+AGG | 0.472935 | 3_2:+15344386 | Msa0396650:CDS |
| TGTTATTGAACTCAGCAATC+CGG | 0.481393 | 3_2:+15340400 | Msa0396650:CDS |
| ACCAAGTTATTTGAGGAACT+TGG | 0.485648 | 3_2:+15341491 | Msa0396650:CDS |
| AGATTCGGTGGTGAAAGAGT+AGG | 0.488495 | 3_2:-15342233 | None:intergenic |
| AACCGAGTTCCTTTAGAAGC+AGG | 0.491153 | 3_2:+15345084 | Msa0396650:CDS |
| GCTAGTCTTGGAGTCATTGG+TGG | 0.491588 | 3_2:+15342968 | Msa0396650:CDS |
| CCTTTATTATGGAATACTGT+TGG | 0.492405 | 3_2:+15341515 | Msa0396650:CDS |
| CATCCTCTACCTGCTTCTAA+AGG | 0.500981 | 3_2:-15345093 | None:intergenic |
| GTTCCTTTAGAAGCAGGTAG+AGG | 0.520910 | 3_2:+15345090 | Msa0396650:CDS |
| TCCAAGTTCCTCAAATAACT+TGG | 0.522228 | 3_2:-15341492 | None:intergenic |
| TGGCATCTCACCCTGATACA+AGG | 0.537570 | 3_2:+15342502 | Msa0396650:CDS |
| CTGTTGTTACATGAGAATGT+TGG | 0.540471 | 3_2:+15345057 | Msa0396650:CDS |
| AACACACTTTGAGAATTTGA+GGG | 0.544051 | 3_2:+15342943 | Msa0396650:CDS |
| AGTCATTGGTGGCTCGATGA+AGG | 0.546457 | 3_2:+15342979 | Msa0396650:CDS |
| TGTTTGTCTAATATGCAAAA+CGG | 0.565201 | 3_2:+15344112 | Msa0396650:CDS |
| ACAAGGATCTCATTTCTCAA+TGG | 0.566776 | 3_2:+15342519 | Msa0396650:CDS |
| AGCCTCAACAAACGAGGTGA+GGG | 0.573904 | 3_2:-15344388 | None:intergenic |
| AAGCCTCAACAAACGAGGTG+AGG | 0.580867 | 3_2:-15344389 | None:intergenic |
| TGCTCTCTATGTGCTCTCCA+AGG | 0.584461 | 3_2:+15340436 | Msa0396650:CDS |
| GAAATGAGATCCTTGTATCA+GGG | 0.596244 | 3_2:-15342512 | None:intergenic |
| CACACTCGAGTTGATTGTGA+GGG | 0.603583 | 3_2:-15342260 | None:intergenic |
| TAACACCACTGATCATAGGA+TGG | 0.625981 | 3_2:+15340361 | Msa0396650:CDS |
| CTCAACAAACGAGGTGAGGG+TGG | 0.629401 | 3_2:-15344385 | None:intergenic |
| TACCTGCTTCTAAAGGAACT+CGG | 0.631809 | 3_2:-15345086 | None:intergenic |
| GATTGCTGAGTTCAATAACA+AGG | 0.649486 | 3_2:-15340397 | None:intergenic |
| GCACACTCGAGTTGATTGTG+AGG | 0.665692 | 3_2:-15342261 | None:intergenic |
| ATCATAAGCCTCAACAAACG+AGG | 0.665735 | 3_2:-15344394 | None:intergenic |
| GTAAGCCATCCTATGATCAG+TGG | 0.669763 | 3_2:-15340366 | None:intergenic |
| TCAGTGGTGTTAGAATCACC+AGG | 0.685443 | 3_2:-15340350 | None:intergenic |
| TGTGAGGGAGAGAGATTCGG+TGG | 0.689243 | 3_2:-15342245 | None:intergenic |
| GTTGTTACATGAGAATGTTG+GGG | 0.746517 | 3_2:+15345059 | Msa0396650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATAATTGAATTGAA+AGG | + | chr3_2:15340644-15340663 | Msa0396650:intron | 10.0% |
| !!! | TTTTTATAATTGAATTGAAA+GGG | + | chr3_2:15340645-15340664 | Msa0396650:intron | 10.0% |
| !! | GAAAAATAAAAACATAAATT+TGG | - | chr3_2:15341891-15341910 | None:intergenic | 10.0% |
| !!! | CATATATATTTTTTACATTA+AGG | - | chr3_2:15342435-15342454 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTTTGTAGTTTT+TGG | + | chr3_2:15343084-15343103 | Msa0396650:intron | 10.0% |
| !!! | TTAAAAGATATATATTTTAG+CGG | + | chr3_2:15343613-15343632 | Msa0396650:intron | 10.0% |
| !! | AGTTATAATAAATTAATTGT+CGG | + | chr3_2:15343705-15343724 | Msa0396650:intron | 10.0% |
| !!! | TACAATAATATCTAATTTTA+GGG | - | chr3_2:15343759-15343778 | None:intergenic | 10.0% |
| !! | ATTATATGAAAATTGATATT+AGG | + | chr3_2:15343857-15343876 | Msa0396650:intron | 10.0% |
| !! | AATACTCTATAATAATAAAT+TGG | - | chr3_2:15344184-15344203 | None:intergenic | 10.0% |
| !! | ATATTAAATTATATCATATC+AGG | - | chr3_2:15344669-15344688 | None:intergenic | 10.0% |
| !! | ATTAGTTAATAATAAATCAA+TGG | - | chr3_2:15344803-15344822 | None:intergenic | 10.0% |
| !!! | GAACTTTTATACTAAAATTT+CGG | + | chr3_2:15341399-15341418 | Msa0396650:intron | 15.0% |
| !! | ATAGATTCATAATCTAAAAA+TGG | - | chr3_2:15341836-15341855 | None:intergenic | 15.0% |
| !! | AACTACAAAAAAAAATTACT+GGG | - | chr3_2:15343082-15343101 | None:intergenic | 15.0% |
| !! | AAACTACAAAAAAAAATTAC+TGG | - | chr3_2:15343083-15343102 | None:intergenic | 15.0% |
| !!! | ATATTTCTTTTTGTAGTTTT+TGG | - | chr3_2:15343283-15343302 | None:intergenic | 15.0% |
| !!! | TCATACAGTTTTTTTTTTTT+TGG | - | chr3_2:15343577-15343596 | None:intergenic | 15.0% |
| !! | GACAATTAATTTATTATAAC+TGG | - | chr3_2:15343706-15343725 | None:intergenic | 15.0% |
| !!! | CTACAATAATATCTAATTTT+AGG | - | chr3_2:15343760-15343779 | None:intergenic | 15.0% |
| !! | AAAATTGATATTAGGTATTT+GGG | + | chr3_2:15343865-15343884 | Msa0396650:intron | 15.0% |
| !! | TTAAGATTAAAAGTTTAATC+AGG | - | chr3_2:15344517-15344536 | None:intergenic | 15.0% |
| !!! | TAAACTTTTAATCTTAAAAC+AGG | + | chr3_2:15344520-15344539 | Msa0396650:intron | 15.0% |
| !!! | AAACTTTTAATCTTAAAACA+GGG | + | chr3_2:15344521-15344540 | Msa0396650:intron | 15.0% |
| !!! | TTCATTTTTAATGTCTTTCA+TGG | + | chr3_2:15340487-15340506 | Msa0396650:intron | 20.0% |
| !!! | TCATTTTTAATGTCTTTCAT+GGG | + | chr3_2:15340488-15340507 | Msa0396650:intron | 20.0% |
| !! | TAATTGTTTCGTTATTGAAA+GGG | + | chr3_2:15340837-15340856 | Msa0396650:intron | 20.0% |
| !!! | CTTTTCAATTTTAATGCATT+TGG | + | chr3_2:15340954-15340973 | Msa0396650:intron | 20.0% |
| !!! | AAATTTTTTCAATGGTATTC+CGG | - | chr3_2:15341018-15341037 | None:intergenic | 20.0% |
| !!! | AAGCTTCTAAATTTTTTCAA+TGG | - | chr3_2:15341026-15341045 | None:intergenic | 20.0% |
| !!! | GATAGTGTGATTTTTTTTAA+TGG | + | chr3_2:15341105-15341124 | Msa0396650:intron | 20.0% |
| !!! | AATCTTGATTTTACCATAAA+TGG | - | chr3_2:15341175-15341194 | None:intergenic | 20.0% |
| !!! | TTACCATGTTTGTTTTATTT+TGG | + | chr3_2:15341377-15341396 | Msa0396650:intron | 20.0% |
| !!! | ATTACATATTATTTTCTAGC+TGG | + | chr3_2:15341580-15341599 | Msa0396650:intron | 20.0% |
| !!! | AATTTAGTTTTTAAACCTCT+AGG | + | chr3_2:15342041-15342060 | Msa0396650:intron | 20.0% |
| !!! | ATTGATTTTCATGTATTTTG+GGG | - | chr3_2:15342372-15342391 | None:intergenic | 20.0% |
| !!! | GATTGATTTTCATGTATTTT+GGG | - | chr3_2:15342373-15342392 | None:intergenic | 20.0% |
| !!! | TGATTGATTTTCATGTATTT+TGG | - | chr3_2:15342374-15342393 | None:intergenic | 20.0% |
| !!! | AATGTTTTTTTTATAGTGTG+TGG | + | chr3_2:15342482-15342501 | Msa0396650:intron | 20.0% |
| !! | TATGGAGATATATAACTATT+TGG | + | chr3_2:15342676-15342695 | Msa0396650:intron | 20.0% |
| !! | AGCTGCATATAATAAAAAAA+AGG | - | chr3_2:15342876-15342895 | None:intergenic | 20.0% |
| !! | AGGAATGGATATAAATATAA+AGG | - | chr3_2:15342905-15342924 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTGGCTAAAATA+TGG | + | chr3_2:15343019-15343038 | Msa0396650:intron | 20.0% |
| !!! | TCTGCAAAATATTTTGTTTT+TGG | + | chr3_2:15343212-15343231 | Msa0396650:intron | 20.0% |
| !!! | TATTTTGTTTTTGGAAATAG+TGG | + | chr3_2:15343221-15343240 | Msa0396650:intron | 20.0% |
| !!! | TCAAAAACAAAATATTTTGC+AGG | + | chr3_2:15343255-15343274 | Msa0396650:intron | 20.0% |
| !!! | CAAAAACAAAATATTTTGCA+GGG | + | chr3_2:15343256-15343275 | Msa0396650:intron | 20.0% |
| !! | ACTACAAAAAGAAATATTAC+AGG | + | chr3_2:15343286-15343305 | Msa0396650:intron | 20.0% |
| !! | CTACAAAAAGAAATATTACA+GGG | + | chr3_2:15343287-15343306 | Msa0396650:intron | 20.0% |
| !! | AAAAAACAAAGGCTAAAATA+TGG | - | chr3_2:15343351-15343370 | None:intergenic | 20.0% |
| !!! | AAATATATTTTCACATTGCA+AGG | - | chr3_2:15343440-15343459 | None:intergenic | 20.0% |
| !! | TTCACACAATAAACTAATTA+AGG | + | chr3_2:15343519-15343538 | Msa0396650:intron | 20.0% |
| !!! | CAATGTTAGTAAAAGTTTTA+AGG | - | chr3_2:15343677-15343696 | None:intergenic | 20.0% |
| !!! | CTTAAAACTTTTACTAACAT+TGG | + | chr3_2:15343675-15343694 | Msa0396650:intron | 20.0% |
| !! | ATTGTCGGTAAAAAATTTAA+CGG | + | chr3_2:15343720-15343739 | Msa0396650:intron | 20.0% |
| !! | GAAAATTGATATTAGGTATT+TGG | + | chr3_2:15343864-15343883 | Msa0396650:intron | 20.0% |
| !! | AAAATTATATTAGACGATGA+TGG | + | chr3_2:15344280-15344299 | Msa0396650:CDS | 20.0% |
| !! | ATTGAATTCTCTCTTTATAA+AGG | - | chr3_2:15344962-15344981 | None:intergenic | 20.0% |
| ! | TTCACAAGTAATACAAATCT+TGG | + | chr3_2:15340512-15340531 | Msa0396650:intron | 25.0% |
| ! | ATGAGAACAAAGATGTTATT+AGG | - | chr3_2:15340614-15340633 | None:intergenic | 25.0% |
| ! | CTTTCAATAACGAAACAATT+AGG | - | chr3_2:15340838-15340857 | None:intergenic | 25.0% |
| ! | CTAATTGTTTCGTTATTGAA+AGG | + | chr3_2:15340836-15340855 | Msa0396650:intron | 25.0% |
| !! | ATCAATTTTTGTCGAAAACT+TGG | + | chr3_2:15340977-15340996 | Msa0396650:intron | 25.0% |
| !! | CTTTACTTTGACTTTAAATG+AGG | - | chr3_2:15341057-15341076 | None:intergenic | 25.0% |
| ! | AAAATCACACTATCAAATGT+CGG | - | chr3_2:15341099-15341118 | None:intergenic | 25.0% |
| ! | GTTCCAAAATAAAACAAACA+TGG | - | chr3_2:15341383-15341402 | None:intergenic | 25.0% |
| !!! | TACTATTGCAGTATTTTTAC+AGG | + | chr3_2:15341538-15341557 | Msa0396650:CDS | 25.0% |
| ! | ATATTTGATGAAACACACAA+TGG | + | chr3_2:15341744-15341763 | Msa0396650:intron | 25.0% |
| ! | AATTTGGAGAAAGATATACA+TGG | - | chr3_2:15341875-15341894 | None:intergenic | 25.0% |
| !!! | TTATTTTTCCAACTTTTACG+AGG | + | chr3_2:15341902-15341921 | Msa0396650:intron | 25.0% |
| !! | TATTTTTCCAACTTTTACGA+GGG | + | chr3_2:15341903-15341922 | Msa0396650:intron | 25.0% |
| ! | ACTTAGAAAATATATGGTGA+TGG | + | chr3_2:15341928-15341947 | Msa0396650:intron | 25.0% |
| !!! | TAGCTCAAGGATTTTTTTTT+AGG | + | chr3_2:15341997-15342016 | Msa0396650:intron | 25.0% |
| !!! | AGCTCAAGGATTTTTTTTTA+GGG | + | chr3_2:15341998-15342017 | Msa0396650:intron | 25.0% |
| !!! | TTGATTTTCATGTATTTTGG+GGG | - | chr3_2:15342371-15342390 | None:intergenic | 25.0% |
| ! | TTATTCTGAATTACAATCCA+AGG | + | chr3_2:15342574-15342593 | Msa0396650:intron | 25.0% |
| !! | GTTCTTTTGTGAAAATACTA+TGG | + | chr3_2:15342658-15342677 | Msa0396650:intron | 25.0% |
| !!! | TGAAAAGTGTTTTGAATAAG+AGG | + | chr3_2:15342735-15342754 | Msa0396650:intron | 25.0% |
| !!! | GAAAAGTGTTTTGAATAAGA+GGG | + | chr3_2:15342736-15342755 | Msa0396650:intron | 25.0% |
| !!! | CTTTCCCATTTTTAACATAA+TGG | - | chr3_2:15342811-15342830 | None:intergenic | 25.0% |
| !!! | TTAACTTGCTTGTTGTTTTA+AGG | - | chr3_2:15342925-15342944 | None:intergenic | 25.0% |
| ! | AAAAACAAAAGTTAGAAGGA+TGG | - | chr3_2:15343009-15343028 | None:intergenic | 25.0% |
| !!! | ATCCTTCTAACTTTTGTTTT+TGG | + | chr3_2:15343008-15343027 | Msa0396650:intron | 25.0% |
| ! | TAAGGATTCTCTAAACTTTA+TGG | + | chr3_2:15343537-15343556 | Msa0396650:intron | 25.0% |
| ! | CAAAACGAAATAAATAAGCA+TGG | - | chr3_2:15344019-15344038 | None:intergenic | 25.0% |
| !! | TGCTTATTTATTTCGTTTTG+TGG | + | chr3_2:15344019-15344038 | Msa0396650:intron | 25.0% |
| ! | TGTTTGTCTAATATGCAAAA+CGG | + | chr3_2:15344112-15344131 | Msa0396650:CDS | 25.0% |
| ! | TTCAACAATTCTTAAGATCA+TGG | - | chr3_2:15344468-15344487 | None:intergenic | 25.0% |
| ! | ACGAAAAAAATTGATGAGAT+TGG | - | chr3_2:15344592-15344611 | None:intergenic | 25.0% |
| ! | ATATTACAAGACATGCTATT+AGG | + | chr3_2:15344719-15344738 | Msa0396650:intron | 25.0% |
| ! | TATTACAAGACATGCTATTA+GGG | + | chr3_2:15344720-15344739 | Msa0396650:intron | 25.0% |
| !!! | TAAGTTTTGTGACACATTTA+TGG | + | chr3_2:15344859-15344878 | Msa0396650:intron | 25.0% |
| !! | CATTTATGGTATTTTCAAAG+TGG | + | chr3_2:15344873-15344892 | Msa0396650:intron | 25.0% |
| ! | CTAGATATTGTTTCAATTTC+AGG | + | chr3_2:15345008-15345027 | Msa0396650:intron | 25.0% |
| AGATAGATATGTAAGAACCT+TGG | - | chr3_2:15340456-15340475 | None:intergenic | 30.0% | |
| ACAAGTAATACAAATCTTGG+AGG | + | chr3_2:15340515-15340534 | Msa0396650:intron | 30.0% | |
| TGTTATTAGGTCTAGCAAAA+GGG | - | chr3_2:15340601-15340620 | None:intergenic | 30.0% | |
| ATGTTATTAGGTCTAGCAAA+AGG | - | chr3_2:15340602-15340621 | None:intergenic | 30.0% | |
| TTCACTGTTTAGTGTATCAT+GGG | + | chr3_2:15340860-15340879 | Msa0396650:intron | 30.0% | |
| TTTGTCGAAAACTTGGTATT+CGG | + | chr3_2:15340984-15341003 | Msa0396650:intron | 30.0% | |
| CCAACAGTATTCCATAATAA+AGG | - | chr3_2:15341518-15341537 | None:intergenic | 30.0% | |
| CCTTTATTATGGAATACTGT+TGG | + | chr3_2:15341515-15341534 | Msa0396650:CDS | 30.0% | |
| ATGAAACACACAATGGTATT+GGG | + | chr3_2:15341751-15341770 | Msa0396650:intron | 30.0% | |
| TGAAATGATGATTGTTCTGA+AGG | - | chr3_2:15341813-15341832 | None:intergenic | 30.0% | |
| AGGGAGACTTAGAAAATATA+TGG | + | chr3_2:15341922-15341941 | Msa0396650:intron | 30.0% | |
| !!! | GTTGTGCTGTTTTTTTTTTC+AGG | + | chr3_2:15342193-15342212 | Msa0396650:intron | 30.0% |
| TTGAATAAGAGGGATGAATT+TGG | + | chr3_2:15342746-15342765 | Msa0396650:intron | 30.0% | |
| CAGGCCATTATGTTAAAAAT+GGG | + | chr3_2:15342804-15342823 | Msa0396650:intron | 30.0% | |
| !!! | TTGCTTGTTGTTTTAAGGAA+TGG | - | chr3_2:15342920-15342939 | None:intergenic | 30.0% |
| ! | TAACACACTTTGAGAATTTG+AGG | + | chr3_2:15342942-15342961 | Msa0396650:CDS | 30.0% |
| ! | AACACACTTTGAGAATTTGA+GGG | + | chr3_2:15342943-15342962 | Msa0396650:CDS | 30.0% |
| AGCCAAAAACAAAAGTTAGA+AGG | - | chr3_2:15343013-15343032 | None:intergenic | 30.0% | |
| ACATGATGATTGAACCTATT+CGG | + | chr3_2:15343176-15343195 | Msa0396650:intron | 30.0% | |
| !! | AGACTATTTTTCTACCGAAT+AGG | - | chr3_2:15343193-15343212 | None:intergenic | 30.0% |
| !!! | TTTGTTTTTGGAAATAGTGG+AGG | + | chr3_2:15343224-15343243 | Msa0396650:intron | 30.0% |
| !!! | TTGTTTTTGGAAATAGTGGA+GGG | + | chr3_2:15343225-15343244 | Msa0396650:intron | 30.0% |
| TCAGCTGCATTAAAAAACAA+AGG | - | chr3_2:15343362-15343381 | None:intergenic | 30.0% | |
| AGGACAGTTATAATGAATGT+TGG | - | chr3_2:15343657-15343676 | None:intergenic | 30.0% | |
| TGAACTAATCCTAACAAGTT+GGG | - | chr3_2:15343900-15343919 | None:intergenic | 30.0% | |
| ATGAACTAATCCTAACAAGT+TGG | - | chr3_2:15343901-15343920 | None:intergenic | 30.0% | |
| TTGTGGTATTTGATATTCAC+AGG | + | chr3_2:15344036-15344055 | Msa0396650:intron | 30.0% | |
| ATAGAAACCTATGACTTCTT+TGG | - | chr3_2:15344068-15344087 | None:intergenic | 30.0% | |
| GATATACAACTTTCATTAGC+AGG | - | chr3_2:15344232-15344251 | None:intergenic | 30.0% | |
| ATTATAAATGTTGCAACCTG+TGG | - | chr3_2:15344256-15344275 | None:intergenic | 30.0% | |
| ! | TATATTAGACGATGATGGTT+TGG | + | chr3_2:15344285-15344304 | Msa0396650:CDS | 30.0% |
| !!! | GCTACAACAGAGAATTTTTT+TGG | + | chr3_2:15344319-15344338 | Msa0396650:CDS | 30.0% |
| TAACAACTTATCTTCCAAAC+AGG | + | chr3_2:15344556-15344575 | Msa0396650:CDS | 30.0% | |
| GTATGATACACACATTCAAT+AGG | - | chr3_2:15344764-15344783 | None:intergenic | 30.0% | |
| TGTCACAAAACTTACTAAAG+AGG | - | chr3_2:15344853-15344872 | None:intergenic | 30.0% | |
| TCAAAGTGGATACTAACTAT+AGG | + | chr3_2:15344887-15344906 | Msa0396650:intron | 30.0% | |
| TGTTGTTACATGAGAATGTT+GGG | + | chr3_2:15345058-15345077 | Msa0396650:CDS | 30.0% | |
| ATTCTAACACCACTGATCAT+AGG | + | chr3_2:15340357-15340376 | Msa0396650:CDS | 35.0% | |
| GATTGCTGAGTTCAATAACA+AGG | - | chr3_2:15340400-15340419 | None:intergenic | 35.0% | |
| TGTTATTGAACTCAGCAATC+CGG | + | chr3_2:15340400-15340419 | Msa0396650:CDS | 35.0% | |
| !!! | AGAGCATTTTCTCTAAGATC+CGG | - | chr3_2:15340422-15340441 | None:intergenic | 35.0% |
| ! | AAAGGGTTTAATGTTGGTAG+AGG | - | chr3_2:15340584-15340603 | None:intergenic | 35.0% |
| CTAGCAAAAGGGTTTAATGT+TGG | - | chr3_2:15340590-15340609 | None:intergenic | 35.0% | |
| TGTTTACGCTTCACTTCTTA+GGG | + | chr3_2:15340683-15340702 | Msa0396650:intron | 35.0% | |
| GGAAATGAGACCTGATTATT+TGG | + | chr3_2:15340705-15340724 | Msa0396650:intron | 35.0% | |
| TCTGGTAGGTCAATAAAATC+TGG | + | chr3_2:15340734-15340753 | Msa0396650:intron | 35.0% | |
| AGAACCTAGGTTCAATTTCT+GGG | - | chr3_2:15340775-15340794 | None:intergenic | 35.0% | |
| GTTCTCCAGAATAATGTCTT+TGG | + | chr3_2:15340790-15340809 | Msa0396650:intron | 35.0% | |
| GTTCACTGTTTAGTGTATCA+TGG | + | chr3_2:15340859-15340878 | Msa0396650:intron | 35.0% | |
| AAAACTTGGTATTCGGTCAT+AGG | + | chr3_2:15340991-15341010 | Msa0396650:intron | 35.0% | |
| GACGACATCTAATCCATTTA+TGG | + | chr3_2:15341159-15341178 | Msa0396650:intron | 35.0% | |
| AATCAAGATTACTATCGCAC+AGG | + | chr3_2:15341185-15341204 | Msa0396650:intron | 35.0% | |
| ACCAAGTTATTTGAGGAACT+TGG | + | chr3_2:15341491-15341510 | Msa0396650:CDS | 35.0% | |
| TCCAAGTTCCTCAAATAACT+TGG | - | chr3_2:15341495-15341514 | None:intergenic | 35.0% | |
| AGGAACTTGGACCTTTATTA+TGG | + | chr3_2:15341504-15341523 | Msa0396650:CDS | 35.0% | |
| TTGTGCATGTATCTTACTTG+TGG | + | chr3_2:15341703-15341722 | Msa0396650:intron | 35.0% | |
| GATGAAACACACAATGGTAT+TGG | + | chr3_2:15341750-15341769 | Msa0396650:intron | 35.0% | |
| GAAGGATTGTAATACGACAA+AGG | - | chr3_2:15341795-15341814 | None:intergenic | 35.0% | |
| TGGAGAAAGATATACATGGT+AGG | - | chr3_2:15341871-15341890 | None:intergenic | 35.0% | |
| TTTCAAGAGATGTTAGCTCA+AGG | + | chr3_2:15341984-15342003 | Msa0396650:intron | 35.0% | |
| GATTTGAACTTCTTTCCTAG+AGG | - | chr3_2:15342059-15342078 | None:intergenic | 35.0% | |
| !! | GGTCATTTTACAGTTGTTTG+AGG | - | chr3_2:15342083-15342102 | None:intergenic | 35.0% |
| ATTCATAAGAGTCGCACTAA+TGG | - | chr3_2:15342104-15342123 | None:intergenic | 35.0% | |
| GAAATGAGATCCTTGTATCA+GGG | - | chr3_2:15342515-15342534 | None:intergenic | 35.0% | |
| AGAAATGAGATCCTTGTATC+AGG | - | chr3_2:15342516-15342535 | None:intergenic | 35.0% | |
| ACAAGGATCTCATTTCTCAA+TGG | + | chr3_2:15342519-15342538 | Msa0396650:CDS | 35.0% | |
| !! | CAACTTGTTACATACAACCT+TGG | - | chr3_2:15342594-15342613 | None:intergenic | 35.0% |
| AAGTTATTGCAACCAAAAGC+TGG | - | chr3_2:15342783-15342802 | None:intergenic | 35.0% | |
| !! | TTTTGGTTGCAATAACTTGC+AGG | + | chr3_2:15342785-15342804 | Msa0396650:intron | 35.0% |
| GCAGGCCATTATGTTAAAAA+TGG | + | chr3_2:15342803-15342822 | Msa0396650:intron | 35.0% | |
| CAAAACGAGGCATATTTACA+GGG | - | chr3_2:15343052-15343071 | None:intergenic | 35.0% | |
| ACAAAACGAGGCATATTTAC+AGG | - | chr3_2:15343053-15343072 | None:intergenic | 35.0% | |
| !!! | AATATGCCTCGTTTTGGTTT+TGG | + | chr3_2:15343115-15343134 | Msa0396650:intron | 35.0% |
| GTGCAAATCATCACAAAAGT+GGG | - | chr3_2:15343149-15343168 | None:intergenic | 35.0% | |
| TGTGCAAATCATCACAAAAG+TGG | - | chr3_2:15343150-15343169 | None:intergenic | 35.0% | |
| CAAAACGAGACATATTTGCA+GGG | + | chr3_2:15343318-15343337 | Msa0396650:intron | 35.0% | |
| ! | ACTTACAAACCCAACTTGTT+AGG | + | chr3_2:15343888-15343907 | Msa0396650:intron | 35.0% |
| TTAGTTCATCTACATCACGA+AGG | + | chr3_2:15343912-15343931 | Msa0396650:intron | 35.0% | |
| TAGTTCATCTACATCACGAA+GGG | + | chr3_2:15343913-15343932 | Msa0396650:intron | 35.0% | |
| GTTAACACCAAAGAAGTCAT+AGG | + | chr3_2:15344058-15344077 | Msa0396650:CDS | 35.0% | |
| !! | GCAGGTATTGGTAACAAAAA+TGG | - | chr3_2:15344214-15344233 | None:intergenic | 35.0% |
| CAACTTTCATTAGCAGGTAT+TGG | - | chr3_2:15344226-15344245 | None:intergenic | 35.0% | |
| TGAAAGTTGTATATCTCCAC+AGG | + | chr3_2:15344237-15344256 | Msa0396650:intron | 35.0% | |
| CTTATCTCAAAATTGCAGGT+TGG | + | chr3_2:15344432-15344451 | Msa0396650:intron | 35.0% | |
| AGGATGATCCAAAAACTATG+AGG | + | chr3_2:15345028-15345047 | Msa0396650:intron | 35.0% | |
| TGATCCAAAAACTATGAGGT+TGG | + | chr3_2:15345032-15345051 | Msa0396650:CDS | 35.0% | |
| ! | AGTACCAACCTCATAGTTTT+TGG | - | chr3_2:15345039-15345058 | None:intergenic | 35.0% |
| CTGTTGTTACATGAGAATGT+TGG | + | chr3_2:15345057-15345076 | Msa0396650:CDS | 35.0% | |
| GTTGTTACATGAGAATGTTG+GGG | + | chr3_2:15345059-15345078 | Msa0396650:CDS | 35.0% | |
| TTCTTTGTTGAGAGCGATTG+AGG | - | chr3_2:15340308-15340327 | None:intergenic | 40.0% | |
| ! | GCATCGTTTATAGCTTTTCC+TGG | + | chr3_2:15340332-15340351 | Msa0396650:CDS | 40.0% |
| TAACACCACTGATCATAGGA+TGG | + | chr3_2:15340361-15340380 | Msa0396650:CDS | 40.0% | |
| GTGTTTACGCTTCACTTCTT+AGG | + | chr3_2:15340682-15340701 | Msa0396650:intron | 40.0% | |
| GTTTACGCTTCACTTCTTAG+GGG | + | chr3_2:15340684-15340703 | Msa0396650:intron | 40.0% | |
| CAGACGAACTCCAAATAATC+AGG | - | chr3_2:15340718-15340737 | None:intergenic | 40.0% | |
| ! | CTGATTATTTGGAGTTCGTC+TGG | + | chr3_2:15340716-15340735 | Msa0396650:intron | 40.0% |
| ! | TTATTTGGAGTTCGTCTGGT+AGG | + | chr3_2:15340720-15340739 | Msa0396650:intron | 40.0% |
| GAGAACCTAGGTTCAATTTC+TGG | - | chr3_2:15340776-15340795 | None:intergenic | 40.0% | |
| ! | GACATTATTCTGGAGAACCT+AGG | - | chr3_2:15340788-15340807 | None:intergenic | 40.0% |
| CTCCAGAATAATGTCTTTGG+TGG | + | chr3_2:15340793-15340812 | Msa0396650:intron | 40.0% | |
| CTCCACCAAAGACATTATTC+TGG | - | chr3_2:15340798-15340817 | None:intergenic | 40.0% | |
| ! | ACGAAACAATTAGGCTCTAG+TGG | - | chr3_2:15340829-15340848 | None:intergenic | 40.0% |
| ATCACACTATCAAATGTCGG+TGG | - | chr3_2:15341096-15341115 | None:intergenic | 40.0% | |
| ! | TCAGAGCACCAAGTTATTTG+AGG | + | chr3_2:15341484-15341503 | Msa0396650:intron | 40.0% |
| TAAGTCTCCCTCGTAAAAGT+TGG | - | chr3_2:15341913-15341932 | None:intergenic | 40.0% | |
| CAATGTTCTTGCACTACTTC+AGG | + | chr3_2:15342283-15342302 | Msa0396650:CDS | 40.0% | |
| ! | GATTCTCTATGACCAGCTTT+TGG | + | chr3_2:15342768-15342787 | Msa0396650:intron | 40.0% |
| ! | AATTTGAGGGTTGCTAGTCT+TGG | + | chr3_2:15342956-15342975 | Msa0396650:CDS | 40.0% |
| ACTGGGACTAAAACAAAACG+AGG | - | chr3_2:15343065-15343084 | None:intergenic | 40.0% | |
| CAAAACGAGGCATATTTGCA+GGG | - | chr3_2:15343111-15343130 | None:intergenic | 40.0% | |
| ! | TTTGTGATGATTTGCACACG+TGG | + | chr3_2:15343152-15343171 | Msa0396650:intron | 40.0% |
| ! | CCTGCAAATATGTCTCGTTT+TGG | - | chr3_2:15343320-15343339 | None:intergenic | 40.0% |
| CCAAAACGAGACATATTTGC+AGG | + | chr3_2:15343317-15343336 | Msa0396650:intron | 40.0% | |
| !!! | TCGAGTTTTGAACATGACGT+TGG | + | chr3_2:15344348-15344367 | Msa0396650:CDS | 40.0% |
| ATCATAAGCCTCAACAAACG+AGG | - | chr3_2:15344397-15344416 | None:intergenic | 40.0% | |
| CTCGCTTATCTCAAAATTGC+AGG | + | chr3_2:15344428-15344447 | Msa0396650:CDS | 40.0% | |
| TACAAGACATGCTATTAGGG+TGG | + | chr3_2:15344723-15344742 | Msa0396650:intron | 40.0% | |
| ! | ATGCTATTAGGGTGGCTTTT+AGG | + | chr3_2:15344731-15344750 | Msa0396650:intron | 40.0% |
| ! | TACCTGCTTCTAAAGGAACT+CGG | - | chr3_2:15345089-15345108 | None:intergenic | 40.0% |
| ! | TCAGTGGTGTTAGAATCACC+AGG | - | chr3_2:15340353-15340372 | None:intergenic | 45.0% |
| GTAAGCCATCCTATGATCAG+TGG | - | chr3_2:15340369-15340388 | None:intergenic | 45.0% | |
| TCCACCCAGAAATTGAACCT+AGG | + | chr3_2:15340768-15340787 | Msa0396650:intron | 45.0% | |
| ! | ACCTAGGTTCAATTTCTGGG+TGG | - | chr3_2:15340772-15340791 | None:intergenic | 45.0% |
| TTGGTATTCGGTCATAGGAC+CGG | + | chr3_2:15340996-15341015 | Msa0396650:intron | 45.0% | |
| !! | AGATTCGGTGGTGAAAGAGT+AGG | - | chr3_2:15342236-15342255 | None:intergenic | 45.0% |
| GATTGTGAGGGAGAGAGATT+CGG | - | chr3_2:15342251-15342270 | None:intergenic | 45.0% | |
| !! | CACACTCGAGTTGATTGTGA+GGG | - | chr3_2:15342263-15342282 | None:intergenic | 45.0% |
| !! | GTTGCTAGTCTTGGAGTCAT+TGG | + | chr3_2:15342965-15342984 | Msa0396650:CDS | 45.0% |
| CCAAAACGAGGCATATTTGC+AGG | - | chr3_2:15343112-15343131 | None:intergenic | 45.0% | |
| ! | CCTGCAAATATGCCTCGTTT+TGG | + | chr3_2:15343109-15343128 | Msa0396650:intron | 45.0% |
| CAAGGACCAAAACCAAAACG+AGG | - | chr3_2:15343124-15343143 | None:intergenic | 45.0% | |
| !!! | CTCGTTTTGGTTTTGGTCCT+TGG | + | chr3_2:15343122-15343141 | Msa0396650:intron | 45.0% |
| TCATCACAAAAGTGGGACCA+AGG | - | chr3_2:15343142-15343161 | None:intergenic | 45.0% | |
| TTGGCATCTTTGAGCCTGTT+TGG | - | chr3_2:15344573-15344592 | None:intergenic | 45.0% | |
| ! | AACCGAGTTCCTTTAGAAGC+AGG | + | chr3_2:15345084-15345103 | Msa0396650:CDS | 45.0% |
| ! | GTTCCTTTAGAAGCAGGTAG+AGG | + | chr3_2:15345090-15345109 | Msa0396650:CDS | 45.0% |
| CATCCTCTACCTGCTTCTAA+AGG | - | chr3_2:15345096-15345115 | None:intergenic | 45.0% | |
| !!! | ATTTTATATAAAAAATCTAA+TGG | - | chr3_2:15341327-15341346 | None:intergenic | 5.0% |
| !!! | AATATTTTTTTTTTTGTTTA+AGG | + | chr3_2:15342121-15342140 | Msa0396650:intron | 5.0% |
| TGCTCTCTATGTGCTCTCCA+AGG | + | chr3_2:15340436-15340455 | Msa0396650:CDS | 50.0% | |
| !! | GCACACTCGAGTTGATTGTG+AGG | - | chr3_2:15342264-15342283 | None:intergenic | 50.0% |
| TGGCATCTCACCCTGATACA+AGG | + | chr3_2:15342502-15342521 | Msa0396650:CDS | 50.0% | |
| !! | GCTAGTCTTGGAGTCATTGG+TGG | + | chr3_2:15342968-15342987 | Msa0396650:CDS | 50.0% |
| ! | AGTCATTGGTGGCTCGATGA+AGG | + | chr3_2:15342979-15342998 | Msa0396650:CDS | 50.0% |
| AGCCTCAACAAACGAGGTGA+GGG | - | chr3_2:15344391-15344410 | None:intergenic | 50.0% | |
| AAGCCTCAACAAACGAGGTG+AGG | - | chr3_2:15344392-15344411 | None:intergenic | 50.0% | |
| TGTGAGGGAGAGAGATTCGG+TGG | - | chr3_2:15342248-15342267 | None:intergenic | 55.0% | |
| CTCAACAAACGAGGTGAGGG+TGG | - | chr3_2:15344388-15344407 | None:intergenic | 55.0% | |
| ! | CACCCTCACCTCGTTTGTTG+AGG | + | chr3_2:15344386-15344405 | Msa0396650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15340290 | 15345116 | 15340290 | ID=Msa0396650;Name=Msa0396650 |
| chr3_2 | mRNA | 15340290 | 15345116 | 15340290 | ID=Msa0396650-mRNA-1;Parent=Msa0396650;Name=Msa0396650-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.88|1|1|9|0|307 |
| chr3_2 | exon | 15340290 | 15340457 | 15340290 | ID=Msa0396650-mRNA-1:exon:3412;Parent=Msa0396650-mRNA-1 |
| chr3_2 | exon | 15341488 | 15341559 | 15341488 | ID=Msa0396650-mRNA-1:exon:3413;Parent=Msa0396650-mRNA-1 |
| chr3_2 | exon | 15342215 | 15342304 | 15342215 | ID=Msa0396650-mRNA-1:exon:3414;Parent=Msa0396650-mRNA-1 |
| chr3_2 | exon | 15342498 | 15342540 | 15342498 | ID=Msa0396650-mRNA-1:exon:3415;Parent=Msa0396650-mRNA-1 |
| chr3_2 | exon | 15342894 | 15343000 | 15342894 | ID=Msa0396650-mRNA-1:exon:3416;Parent=Msa0396650-mRNA-1 |
| chr3_2 | exon | 15344058 | 15344153 | 15344058 | ID=Msa0396650-mRNA-1:exon:3417;Parent=Msa0396650-mRNA-1 |
| chr3_2 | exon | 15344259 | 15344449 | 15344259 | ID=Msa0396650-mRNA-1:exon:3418;Parent=Msa0396650-mRNA-1 |
| chr3_2 | exon | 15344542 | 15344611 | 15344542 | ID=Msa0396650-mRNA-1:exon:3419;Parent=Msa0396650-mRNA-1 |
| chr3_2 | exon | 15345030 | 15345116 | 15345030 | ID=Msa0396650-mRNA-1:exon:3420;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15340290 | 15340457 | 15340290 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15341488 | 15341559 | 15341488 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15342215 | 15342304 | 15342215 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15342498 | 15342540 | 15342498 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15342894 | 15343000 | 15342894 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15344058 | 15344153 | 15344058 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15344259 | 15344449 | 15344259 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15344542 | 15344611 | 15344542 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| chr3_2 | CDS | 15345030 | 15345116 | 15345030 | ID=Msa0396650-mRNA-1:cds;Parent=Msa0396650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
