AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0396670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396670 MtrunA17_Chr7g0224601 53.465 303 100 3 12 273 2 304 2.83e-92 275
Msa0396670 MtrunA17_Chr1g0177151 53.543 254 83 2 1 220 1 253 4.32e-90 268
Msa0396670 MtrunA17_Chr8g0392781 45.507 345 116 4 1 273 1 345 4.49e-88 266
Msa0396670 MtrunA17_Chr3g0099561 51.460 274 98 2 35 273 26 299 1.25e-84 255
Msa0396670 MtrunA17_Chr3g0083811 96.552 116 4 0 149 264 1 116 6.12e-76 226
Msa0396670 MtrunA17_Chr5g0444621 50.952 210 69 1 67 242 52 261 2.08e-62 197
Msa0396670 MtrunA17_Chr6g0477171 52.041 196 60 1 59 220 48 243 1.14e-59 190
Msa0396670 MtrunA17_Chr3g0083821 62.338 77 29 0 51 127 10 86 2.75e-26 100
Msa0396670 MtrunA17_Chr6g0477181 57.627 59 22 1 1 56 1 59 4.27e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396670 AT3G20800.1 48.601 286 113 1 22 273 26 311 1.01e-85 259
Msa0396670 AT5G12980.1 45.091 275 116 2 28 267 28 302 3.16e-76 234
Msa0396670 AT2G32550.2 28.980 245 124 5 50 248 67 307 4.69e-21 91.3
Msa0396670 AT2G32550.3 29.060 234 116 5 61 248 39 268 8.57e-21 89.7
Msa0396670 AT2G32550.1 28.241 216 105 5 79 248 2 213 8.01e-16 75.1

Find 43 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAACTTGGACCTTTATTA+TGG 0.221177 3_2:+15389948 Msa0396670:CDS
CTCGCTTATCTCAAAATTGC+AGG 0.298861 3_2:+15392875 Msa0396670:CDS
AGAAATGAGATCCTTGTATC+AGG 0.301701 3_2:-15390959 None:intergenic
ATAGAAACCTATGACTTCTT+TGG 0.317203 3_2:-15392512 None:intergenic
TTGGCATCTTTGAGCCTGTT+TGG 0.349625 3_2:-15393017 None:intergenic
CAATGTTCTTGCACTACTTC+AGG 0.367374 3_2:+15390729 Msa0396670:CDS
TATATTAGACGATGATGGTT+TGG 0.376298 3_2:+15392732 Msa0396670:CDS
CCAACAGTATTCCATAATAA+AGG 0.383147 3_2:-15389959 None:intergenic
GTTAACACCAAAGAAGTCAT+AGG 0.420089 3_2:+15392505 Msa0396670:CDS
TGTTGTTACATGAGAATGTT+GGG 0.422120 3_2:+15393505 Msa0396670:CDS
TCAGAGCACCAAGTTATTTG+AGG 0.428345 3_2:+15389928 Msa0396670:intron
TTCTTTGTTGAGAGCGATTG+AGG 0.439462 3_2:-15388747 None:intergenic
GATTGTGAGGGAGAGAGATT+CGG 0.440290 3_2:-15390694 None:intergenic
ATTCTAACACCACTGATCAT+AGG 0.442748 3_2:+15388799 Msa0396670:CDS
AAAATTATATTAGACGATGA+TGG 0.467412 3_2:+15392727 Msa0396670:CDS
CACCCTCACCTCGTTTGTTG+AGG 0.472935 3_2:+15392833 Msa0396670:CDS
TGTTATTGAACTCAGCAATC+CGG 0.481393 3_2:+15388842 Msa0396670:CDS
ACCAAGTTATTTGAGGAACT+TGG 0.485648 3_2:+15389935 Msa0396670:CDS
AGATTCGGTGGTGAAAGAGT+AGG 0.488495 3_2:-15390679 None:intergenic
AACCGAGTTCCTTTAGAAGC+AGG 0.491153 3_2:+15393531 Msa0396670:CDS
CCTTTATTATGGAATACTGT+TGG 0.492405 3_2:+15389959 Msa0396670:CDS
CATCCTCTACCTGCTTCTAA+AGG 0.500981 3_2:-15393540 None:intergenic
GTTCCTTTAGAAGCAGGTAG+AGG 0.520910 3_2:+15393537 Msa0396670:CDS
TCCAAGTTCCTCAAATAACT+TGG 0.522228 3_2:-15389936 None:intergenic
TGGCATCTCACCCTGATACA+AGG 0.537570 3_2:+15390948 Msa0396670:CDS
CTGTTGTTACATGAGAATGT+TGG 0.540471 3_2:+15393504 Msa0396670:CDS
AGCCTCAACAAACGAGGTGA+GGG 0.559488 3_2:-15392835 None:intergenic
TGTTTGTCTAATATGCAAAA+CGG 0.565201 3_2:+15392559 Msa0396670:CDS
ACAAGGATCTCATTTCTCAA+TGG 0.566776 3_2:+15390965 Msa0396670:CDS
AAGCCTCAACAAACGAGGTG+AGG 0.569309 3_2:-15392836 None:intergenic
TGCTCTCTATGTGCTCTCCA+AGG 0.584461 3_2:+15388878 Msa0396670:CDS
GAAATGAGATCCTTGTATCA+GGG 0.596244 3_2:-15390958 None:intergenic
CACACTCGAGTTGATTGTGA+GGG 0.603583 3_2:-15390706 None:intergenic
TAACACCACTGATCATAGGA+TGG 0.625981 3_2:+15388803 Msa0396670:CDS
CTCAACAAACGAGGTGAGGG+TGG 0.629401 3_2:-15392832 None:intergenic
TACCTGCTTCTAAAGGAACT+CGG 0.631809 3_2:-15393533 None:intergenic
GATTGCTGAGTTCAATAACA+AGG 0.649486 3_2:-15388839 None:intergenic
ATCAAAAGCCTCAACAAACG+AGG 0.660997 3_2:-15392841 None:intergenic
GCACACTCGAGTTGATTGTG+AGG 0.665692 3_2:-15390707 None:intergenic
GTAAGCCATCCTATGATCAG+TGG 0.669763 3_2:-15388808 None:intergenic
TCAGTGGTGTTAGAATCACC+AGG 0.685443 3_2:-15388792 None:intergenic
TGTGAGGGAGAGAGATTCGG+TGG 0.689243 3_2:-15390691 None:intergenic
GTTGTTACATGAGAATGTTG+GGG 0.746517 3_2:+15393506 Msa0396670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATAATTGAATTGAA+AGG + chr3_2:15389086-15389105 Msa0396670:intron 10.0%
!!! TTTTTATAATTGAATTGAAA+GGG + chr3_2:15389087-15389106 Msa0396670:intron 10.0%
!! GAAAAATAAAAACATAAATT+TGG - chr3_2:15390335-15390354 None:intergenic 10.0%
!!! GAATATTTTTTTTTTGTTTA+AGG + chr3_2:15390563-15390582 Msa0396670:intron 10.0%
!!! CATATATATTTTTTACATTA+AGG - chr3_2:15390881-15390900 None:intergenic 10.0%
!!! AATTTTTTTTTTGTAGTTTT+TGG + chr3_2:15391531-15391550 Msa0396670:intron 10.0%
!!! TTAAAAGATATATATTTTAG+CGG + chr3_2:15392060-15392079 Msa0396670:intron 10.0%
!! AGTTATAATAAATTAATTGT+CGG + chr3_2:15392152-15392171 Msa0396670:intron 10.0%
!!! TACAATAATATCTAATTTTA+GGG - chr3_2:15392206-15392225 None:intergenic 10.0%
!! ATTATATGAAAATTGATATT+AGG + chr3_2:15392304-15392323 Msa0396670:intron 10.0%
!! AATACTCTATAATAATAAAT+TGG - chr3_2:15392631-15392650 None:intergenic 10.0%
!! ATATTAAATTATATCATATC+AGG - chr3_2:15393116-15393135 None:intergenic 10.0%
!! ATTAGTTAATAATAAATCAA+TGG - chr3_2:15393250-15393269 None:intergenic 10.0%
!!! GAACTTTTATACTAAAATTT+CGG + chr3_2:15389843-15389862 Msa0396670:intron 15.0%
!! ATAGATTCATAATCTAAAAA+TGG - chr3_2:15390280-15390299 None:intergenic 15.0%
!! ACTACAAAAAAAAAATTACT+GGG - chr3_2:15391528-15391547 None:intergenic 15.0%
!! AACTACAAAAAAAAAATTAC+TGG - chr3_2:15391529-15391548 None:intergenic 15.0%
!!! ATATTTCTTTTTGTAGTTTT+TGG - chr3_2:15391730-15391749 None:intergenic 15.0%
!! GACAATTAATTTATTATAAC+TGG - chr3_2:15392153-15392172 None:intergenic 15.0%
!!! CTACAATAATATCTAATTTT+AGG - chr3_2:15392207-15392226 None:intergenic 15.0%
!! AAAATTGATATTAGGTATTT+GGG + chr3_2:15392312-15392331 Msa0396670:intron 15.0%
!! TTAAGATTAAAAGTTTAATC+AGG - chr3_2:15392964-15392983 None:intergenic 15.0%
!!! TAAACTTTTAATCTTAAAAC+AGG + chr3_2:15392967-15392986 Msa0396670:intron 15.0%
!!! AAACTTTTAATCTTAAAACA+GGG + chr3_2:15392968-15392987 Msa0396670:intron 15.0%
!!! TTCATTTTTAATGTCTTTCA+TGG + chr3_2:15388929-15388948 Msa0396670:intron 20.0%
!!! TCATTTTTAATGTCTTTCAT+GGG + chr3_2:15388930-15388949 Msa0396670:intron 20.0%
!! TAATTGTTTCGTTATTGAAA+GGG + chr3_2:15389281-15389300 Msa0396670:intron 20.0%
!!! AAATTTTTTCAATGGTATTC+CGG - chr3_2:15389462-15389481 None:intergenic 20.0%
!!! AAGCTTCTAAATTTTTTCAA+TGG - chr3_2:15389470-15389489 None:intergenic 20.0%
!!! GATAGTGTGATTTTTTTTAA+TGG + chr3_2:15389549-15389568 Msa0396670:intron 20.0%
!!! AATCTTGATTTTACCATAAA+TGG - chr3_2:15389619-15389638 None:intergenic 20.0%
!!! TTACCATGTTTGTTTTATTT+TGG + chr3_2:15389821-15389840 Msa0396670:intron 20.0%
!!! ATTACATATTATTTTCTAGC+TGG + chr3_2:15390024-15390043 Msa0396670:intron 20.0%
!!! AATTTAGTTTTTAAACCTCT+AGG + chr3_2:15390484-15390503 Msa0396670:intron 20.0%
!!! ATTGATTTTCATGTATTTTG+GGG - chr3_2:15390818-15390837 None:intergenic 20.0%
!!! GATTGATTTTCATGTATTTT+GGG - chr3_2:15390819-15390838 None:intergenic 20.0%
!!! TGATTGATTTTCATGTATTT+TGG - chr3_2:15390820-15390839 None:intergenic 20.0%
!!! AATGTTTTTTTTATAGTGTG+TGG + chr3_2:15390928-15390947 Msa0396670:intron 20.0%
!! TATGGAGATATATAACTATT+TGG + chr3_2:15391122-15391141 Msa0396670:intron 20.0%
!! AGCTGCATATAATAAAAAAA+AGG - chr3_2:15391322-15391341 None:intergenic 20.0%
!! AGGAATGGATATAAATATAA+AGG - chr3_2:15391351-15391370 None:intergenic 20.0%
!!! TTTTGTTTTTGGCTAAAATA+TGG + chr3_2:15391465-15391484 Msa0396670:intron 20.0%
!!! TCTGCAAAATATTTTGTTTT+TGG + chr3_2:15391659-15391678 Msa0396670:intron 20.0%
!!! TATTTTGTTTTTGGAAATAG+TGG + chr3_2:15391668-15391687 Msa0396670:intron 20.0%
!!! TCAAAAACAAAATATTTTGC+AGG + chr3_2:15391702-15391721 Msa0396670:intron 20.0%
!!! CAAAAACAAAATATTTTGCA+GGG + chr3_2:15391703-15391722 Msa0396670:intron 20.0%
!! ACTACAAAAAGAAATATTAC+AGG + chr3_2:15391733-15391752 Msa0396670:intron 20.0%
!! CTACAAAAAGAAATATTACA+GGG + chr3_2:15391734-15391753 Msa0396670:intron 20.0%
!! AAAAAACAAAGGCTAAAATA+TGG - chr3_2:15391798-15391817 None:intergenic 20.0%
!!! AAATATATTTTCACATTGCA+AGG - chr3_2:15391887-15391906 None:intergenic 20.0%
!! TTCACACAATAAACTAATTA+AGG + chr3_2:15391966-15391985 Msa0396670:intron 20.0%
!!! ACAGTTTTTTTTTTTTTGGA+AGG - chr3_2:15392020-15392039 None:intergenic 20.0%
!!! CCATACAGTTTTTTTTTTTT+TGG - chr3_2:15392024-15392043 None:intergenic 20.0%
!! CCAAAAAAAAAAAAACTGTA+TGG + chr3_2:15392021-15392040 Msa0396670:intron 20.0%
!!! CAATGTTAGTAAAAGTTTTA+AGG - chr3_2:15392124-15392143 None:intergenic 20.0%
!!! CTTAAAACTTTTACTAACAT+TGG + chr3_2:15392122-15392141 Msa0396670:intron 20.0%
!!! ATTGTCGGTAAAAATTTTAA+CGG + chr3_2:15392167-15392186 Msa0396670:intron 20.0%
!! GAAAATTGATATTAGGTATT+TGG + chr3_2:15392311-15392330 Msa0396670:intron 20.0%
!! AAAATTATATTAGACGATGA+TGG + chr3_2:15392727-15392746 Msa0396670:CDS 20.0%
!! ATTGAATTCTCTCTTTATAA+AGG - chr3_2:15393409-15393428 None:intergenic 20.0%
! TTCACAAGTAATACAAATCT+TGG + chr3_2:15388954-15388973 Msa0396670:intron 25.0%
! ATGAGAACAAAGATGTTATT+AGG - chr3_2:15389056-15389075 None:intergenic 25.0%
! CTTTCAATAACGAAACAATT+AGG - chr3_2:15389282-15389301 None:intergenic 25.0%
! CTAATTGTTTCGTTATTGAA+AGG + chr3_2:15389280-15389299 Msa0396670:intron 25.0%
!!! CTTTTCAATTTTAATGCATC+TGG + chr3_2:15389398-15389417 Msa0396670:intron 25.0%
!! ATCAATTTTTGTCGAAAACT+TGG + chr3_2:15389421-15389440 Msa0396670:intron 25.0%
!! CTTTACTTTGACTTTAAATG+AGG - chr3_2:15389501-15389520 None:intergenic 25.0%
! AAAATCACACTATCAAATGT+CGG - chr3_2:15389543-15389562 None:intergenic 25.0%
! GTTCCAAAATAAAACAAACA+TGG - chr3_2:15389827-15389846 None:intergenic 25.0%
!!! TACTATTGCAGTATTTTTAC+AGG + chr3_2:15389982-15390001 Msa0396670:CDS 25.0%
! ATATTTGATGAAACACACAA+TGG + chr3_2:15390188-15390207 Msa0396670:intron 25.0%
! AATTTGGAGAAAGATATACA+TGG - chr3_2:15390319-15390338 None:intergenic 25.0%
!!! TTATTTTTCCAACTTTTACG+AGG + chr3_2:15390346-15390365 Msa0396670:intron 25.0%
!! TATTTTTCCAACTTTTACGA+GGG + chr3_2:15390347-15390366 Msa0396670:intron 25.0%
! ACTTAGAAAATATATGGTGA+TGG + chr3_2:15390372-15390391 Msa0396670:intron 25.0%
!!! TTAGCTCAAGGATTTTTTTT+AGG + chr3_2:15390440-15390459 Msa0396670:intron 25.0%
!!! TAGCTCAAGGATTTTTTTTA+GGG + chr3_2:15390441-15390460 Msa0396670:intron 25.0%
!!! TGCTGTTTTTTTTTTCTTTC+AGG + chr3_2:15390639-15390658 Msa0396670:intron 25.0%
!!! TTGATTTTCATGTATTTTGG+GGG - chr3_2:15390817-15390836 None:intergenic 25.0%
! TTATTCTGAATTACAATCCA+AGG + chr3_2:15391020-15391039 Msa0396670:intron 25.0%
!! GTTCTTTTGTGAAAATACTA+TGG + chr3_2:15391104-15391123 Msa0396670:intron 25.0%
!!! TGAAAAGTGTTTTGAATAAG+AGG + chr3_2:15391181-15391200 Msa0396670:intron 25.0%
!!! GAAAAGTGTTTTGAATAAGA+GGG + chr3_2:15391182-15391201 Msa0396670:intron 25.0%
!!! CTTTCCCATTTTTAACATAA+TGG - chr3_2:15391257-15391276 None:intergenic 25.0%
!!! TTAACTTGCTTGTTGTTTTA+AGG - chr3_2:15391371-15391390 None:intergenic 25.0%
! AAAAACAAAAGTTAGAAGGA+TGG - chr3_2:15391455-15391474 None:intergenic 25.0%
!!! ATCCTTCTAACTTTTGTTTT+TGG + chr3_2:15391454-15391473 Msa0396670:intron 25.0%
! TAAGGATTCTCTAAACTTTA+TGG + chr3_2:15391984-15392003 Msa0396670:intron 25.0%
!!! AAGTTTTAAGGACAGTTATA+AGG - chr3_2:15392112-15392131 None:intergenic 25.0%
! CAAAACGAAATAAATAAGCA+TGG - chr3_2:15392466-15392485 None:intergenic 25.0%
!! TGCTTATTTATTTCGTTTTG+TGG + chr3_2:15392466-15392485 Msa0396670:intron 25.0%
! TGTTTGTCTAATATGCAAAA+CGG + chr3_2:15392559-15392578 Msa0396670:CDS 25.0%
! TTCAACAATTCTTAAGATCA+TGG - chr3_2:15392915-15392934 None:intergenic 25.0%
!!! TAACAACTTATTTTCCAAAC+AGG + chr3_2:15393003-15393022 Msa0396670:CDS 25.0%
! ATATTACAAGACATGCTATT+AGG + chr3_2:15393166-15393185 Msa0396670:intron 25.0%
! TATTACAAGACATGCTATTA+GGG + chr3_2:15393167-15393186 Msa0396670:intron 25.0%
!!! TAAGTTTTGTGACACATTTA+TGG + chr3_2:15393306-15393325 Msa0396670:intron 25.0%
!! CATTTATGGTATTTTCAAAG+TGG + chr3_2:15393320-15393339 Msa0396670:intron 25.0%
! CTAGATATTGTTTCAATTTC+AGG + chr3_2:15393455-15393474 Msa0396670:intron 25.0%
ACAAGTAATACAAATCTTGG+AGG + chr3_2:15388957-15388976 Msa0396670:intron 30.0%
TGTTATTAGGTCTAGCAAAA+GGG - chr3_2:15389043-15389062 None:intergenic 30.0%
ATGTTATTAGGTCTAGCAAA+AGG - chr3_2:15389044-15389063 None:intergenic 30.0%
! TCTCCAGAATATTTTGTCTT+TGG + chr3_2:15389234-15389253 Msa0396670:intron 30.0%
TTCACTGTTTAGTGTATCAT+GGG + chr3_2:15389304-15389323 Msa0396670:intron 30.0%
TTTGTCGAAAACTTGGTATT+CGG + chr3_2:15389428-15389447 Msa0396670:intron 30.0%
CCAACAGTATTCCATAATAA+AGG - chr3_2:15389962-15389981 None:intergenic 30.0%
CCTTTATTATGGAATACTGT+TGG + chr3_2:15389959-15389978 Msa0396670:CDS 30.0%
ATGAAACACACAATGGTATT+GGG + chr3_2:15390195-15390214 Msa0396670:intron 30.0%
TGAAATGATGATTGTTCTGA+AGG - chr3_2:15390257-15390276 None:intergenic 30.0%
AGGGAGACTTAGAAAATATA+TGG + chr3_2:15390366-15390385 Msa0396670:intron 30.0%
TTGAATAAGAGGGATGAATT+TGG + chr3_2:15391192-15391211 Msa0396670:intron 30.0%
CAGGCCATTATGTTAAAAAT+GGG + chr3_2:15391250-15391269 Msa0396670:intron 30.0%
!!! TTGCTTGTTGTTTTAAGGAA+TGG - chr3_2:15391366-15391385 None:intergenic 30.0%
! TAACACACTTTGAGAATTTG+AGG + chr3_2:15391388-15391407 Msa0396670:intron 30.0%
! AACACACTTTGAGAATTTGA+GGG + chr3_2:15391389-15391408 Msa0396670:intron 30.0%
AGCCAAAAACAAAAGTTAGA+AGG - chr3_2:15391459-15391478 None:intergenic 30.0%
ACATGATGATTGAACCTATT+CGG + chr3_2:15391623-15391642 Msa0396670:intron 30.0%
!! AGACTATTTTTCTACCGAAT+AGG - chr3_2:15391640-15391659 None:intergenic 30.0%
!!! TTTGTTTTTGGAAATAGTGG+AGG + chr3_2:15391671-15391690 Msa0396670:intron 30.0%
!!! TTGTTTTTGGAAATAGTGGA+GGG + chr3_2:15391672-15391691 Msa0396670:intron 30.0%
TCAGCTGCATTAAAAAACAA+AGG - chr3_2:15391809-15391828 None:intergenic 30.0%
TGAACTAATCCTAACAAGTT+GGG - chr3_2:15392347-15392366 None:intergenic 30.0%
ATGAACTAATCCTAACAAGT+TGG - chr3_2:15392348-15392367 None:intergenic 30.0%
TTGTGGTATTTGATATTCAC+AGG + chr3_2:15392483-15392502 Msa0396670:intron 30.0%
ATAGAAACCTATGACTTCTT+TGG - chr3_2:15392515-15392534 None:intergenic 30.0%
GATATACAACTTTCATTAGC+AGG - chr3_2:15392679-15392698 None:intergenic 30.0%
ATTATAAATGTTGCAACCTG+TGG - chr3_2:15392703-15392722 None:intergenic 30.0%
! TATATTAGACGATGATGGTT+TGG + chr3_2:15392732-15392751 Msa0396670:CDS 30.0%
!!! GCTACAACAGAGAATTTTTT+TGG + chr3_2:15392766-15392785 Msa0396670:CDS 30.0%
!! ACGAAAAAAGTTGATGAGAT+TGG - chr3_2:15393039-15393058 None:intergenic 30.0%
GTATGATACACACATTCAAT+AGG - chr3_2:15393211-15393230 None:intergenic 30.0%
TGTCACAAAACTTACTAAAG+AGG - chr3_2:15393300-15393319 None:intergenic 30.0%
TCAAAGTGGATACTAACTAT+AGG + chr3_2:15393334-15393353 Msa0396670:intron 30.0%
TGTTGTTACATGAGAATGTT+GGG + chr3_2:15393505-15393524 Msa0396670:CDS 30.0%
ATTCTAACACCACTGATCAT+AGG + chr3_2:15388799-15388818 Msa0396670:CDS 35.0%
GATTGCTGAGTTCAATAACA+AGG - chr3_2:15388842-15388861 None:intergenic 35.0%
TGTTATTGAACTCAGCAATC+CGG + chr3_2:15388842-15388861 Msa0396670:CDS 35.0%
!!! AGAGCATTTTCTCTAAGATC+CGG - chr3_2:15388864-15388883 None:intergenic 35.0%
CGATAGATATGTAAGAACCT+TGG - chr3_2:15388898-15388917 None:intergenic 35.0%
! AAAGGGTTTAATGTTGGTAG+AGG - chr3_2:15389026-15389045 None:intergenic 35.0%
CTAGCAAAAGGGTTTAATGT+TGG - chr3_2:15389032-15389051 None:intergenic 35.0%
TGTTTACGCTTCACTTCTTA+GGG + chr3_2:15389125-15389144 Msa0396670:intron 35.0%
GGAAATGAGACCTGATAATT+TGG + chr3_2:15389147-15389166 Msa0396670:intron 35.0%
TCTGGTAGGTCAATAAAATC+TGG + chr3_2:15389176-15389195 Msa0396670:intron 35.0%
AGAACCTAGGTTCAATTTCT+GGG - chr3_2:15389217-15389236 None:intergenic 35.0%
! CAAAATATTCTGGAGAACCT+AGG - chr3_2:15389230-15389249 None:intergenic 35.0%
CCACCAAAGACAAAATATTC+TGG - chr3_2:15389240-15389259 None:intergenic 35.0%
! CCAGAATATTTTGTCTTTGG+TGG + chr3_2:15389237-15389256 Msa0396670:intron 35.0%
GTTCACTGTTTAGTGTATCA+TGG + chr3_2:15389303-15389322 Msa0396670:intron 35.0%
AAAACTTGGTATTCGGTCAT+AGG + chr3_2:15389435-15389454 Msa0396670:intron 35.0%
GACGACATCTAATCCATTTA+TGG + chr3_2:15389603-15389622 Msa0396670:intron 35.0%
AATCAAGATTACTATCGCAC+AGG + chr3_2:15389629-15389648 Msa0396670:intron 35.0%
ACCAAGTTATTTGAGGAACT+TGG + chr3_2:15389935-15389954 Msa0396670:CDS 35.0%
TCCAAGTTCCTCAAATAACT+TGG - chr3_2:15389939-15389958 None:intergenic 35.0%
AGGAACTTGGACCTTTATTA+TGG + chr3_2:15389948-15389967 Msa0396670:CDS 35.0%
TTGTGCATGTATCTTACTTG+TGG + chr3_2:15390147-15390166 Msa0396670:intron 35.0%
GATGAAACACACAATGGTAT+TGG + chr3_2:15390194-15390213 Msa0396670:intron 35.0%
GAAGGATTGTAATACGACAA+AGG - chr3_2:15390239-15390258 None:intergenic 35.0%
TGGAGAAAGATATACATGGT+AGG - chr3_2:15390315-15390334 None:intergenic 35.0%
TTTCAAGAGATGTTAGCTCA+AGG + chr3_2:15390428-15390447 Msa0396670:intron 35.0%
GATTTGAACTTCTTTCCTAG+AGG - chr3_2:15390502-15390521 None:intergenic 35.0%
!! GGTCATTTTACAGTTGTTTG+AGG - chr3_2:15390526-15390545 None:intergenic 35.0%
ATTCATAAGAGTCGCACTAA+TGG - chr3_2:15390547-15390566 None:intergenic 35.0%
GAAATGAGATCCTTGTATCA+GGG - chr3_2:15390961-15390980 None:intergenic 35.0%
AGAAATGAGATCCTTGTATC+AGG - chr3_2:15390962-15390981 None:intergenic 35.0%
ACAAGGATCTCATTTCTCAA+TGG + chr3_2:15390965-15390984 Msa0396670:CDS 35.0%
!! CAACTTGTTACATACAACCT+TGG - chr3_2:15391040-15391059 None:intergenic 35.0%
AAGTTATTGCAACCAAAAGC+TGG - chr3_2:15391229-15391248 None:intergenic 35.0%
!! TTTTGGTTGCAATAACTTGC+AGG + chr3_2:15391231-15391250 Msa0396670:intron 35.0%
GCAGGCCATTATGTTAAAAA+TGG + chr3_2:15391249-15391268 Msa0396670:intron 35.0%
CAAAACGAGGCATATTTACA+GGG - chr3_2:15391498-15391517 None:intergenic 35.0%
ACAAAACGAGGCATATTTAC+AGG - chr3_2:15391499-15391518 None:intergenic 35.0%
!!! AATATGCCTCGTTTTGGTTT+TGG + chr3_2:15391562-15391581 Msa0396670:intron 35.0%
GTGCAAATCATCACAAAAGT+GGG - chr3_2:15391596-15391615 None:intergenic 35.0%
TGTGCAAATCATCACAAAAG+TGG - chr3_2:15391597-15391616 None:intergenic 35.0%
CAAAACGAGACATATTTGCA+GGG + chr3_2:15391765-15391784 Msa0396670:intron 35.0%
AGGACAGTTATAAGGAATGT+TGG - chr3_2:15392104-15392123 None:intergenic 35.0%
! ACTTACAAACCCAACTTGTT+AGG + chr3_2:15392335-15392354 Msa0396670:intron 35.0%
TTAGTTCATCTACATCACGA+AGG + chr3_2:15392359-15392378 Msa0396670:intron 35.0%
TAGTTCATCTACATCACGAA+GGG + chr3_2:15392360-15392379 Msa0396670:intron 35.0%
GTTAACACCAAAGAAGTCAT+AGG + chr3_2:15392505-15392524 Msa0396670:CDS 35.0%
!! GCAGGTATTGGTAACAAAAA+TGG - chr3_2:15392661-15392680 None:intergenic 35.0%
CAACTTTCATTAGCAGGTAT+TGG - chr3_2:15392673-15392692 None:intergenic 35.0%
TGAAAGTTGTATATCTCCAC+AGG + chr3_2:15392684-15392703 Msa0396670:intron 35.0%
!!! TCGAGTTTTGAACATGATGT+TGG + chr3_2:15392795-15392814 Msa0396670:CDS 35.0%
CTTATCTCAAAATTGCAGGT+TGG + chr3_2:15392879-15392898 Msa0396670:intron 35.0%
AGGATGATCCAAAAACTATG+AGG + chr3_2:15393475-15393494 Msa0396670:intron 35.0%
TGATCCAAAAACTATGAGGT+TGG + chr3_2:15393479-15393498 Msa0396670:CDS 35.0%
! AGTACCAACCTCATAGTTTT+TGG - chr3_2:15393486-15393505 None:intergenic 35.0%
CTGTTGTTACATGAGAATGT+TGG + chr3_2:15393504-15393523 Msa0396670:CDS 35.0%
GTTGTTACATGAGAATGTTG+GGG + chr3_2:15393506-15393525 Msa0396670:CDS 35.0%
TTCTTTGTTGAGAGCGATTG+AGG - chr3_2:15388750-15388769 None:intergenic 40.0%
! GCATCGTTTATAGCTTTTCC+TGG + chr3_2:15388774-15388793 Msa0396670:CDS 40.0%
TAACACCACTGATCATAGGA+TGG + chr3_2:15388803-15388822 Msa0396670:CDS 40.0%
GTGTTTACGCTTCACTTCTT+AGG + chr3_2:15389124-15389143 Msa0396670:intron 40.0%
GTTTACGCTTCACTTCTTAG+GGG + chr3_2:15389126-15389145 Msa0396670:intron 40.0%
CAGACGAACTCCAAATTATC+AGG - chr3_2:15389160-15389179 None:intergenic 40.0%
! CTGATAATTTGGAGTTCGTC+TGG + chr3_2:15389158-15389177 Msa0396670:intron 40.0%
! TAATTTGGAGTTCGTCTGGT+AGG + chr3_2:15389162-15389181 Msa0396670:intron 40.0%
GAGAACCTAGGTTCAATTTC+TGG - chr3_2:15389218-15389237 None:intergenic 40.0%
! ACGAAACAATTAGGCTCTAG+TGG - chr3_2:15389273-15389292 None:intergenic 40.0%
ATCACACTATCAAATGTCGG+TGG - chr3_2:15389540-15389559 None:intergenic 40.0%
! TCAGAGCACCAAGTTATTTG+AGG + chr3_2:15389928-15389947 Msa0396670:intron 40.0%
TAAGTCTCCCTCGTAAAAGT+TGG - chr3_2:15390357-15390376 None:intergenic 40.0%
CAATGTTCTTGCACTACTTC+AGG + chr3_2:15390729-15390748 Msa0396670:CDS 40.0%
! GATTCTCTATGACCAGCTTT+TGG + chr3_2:15391214-15391233 Msa0396670:intron 40.0%
! AATTTGAGGGTTGCTAGTCT+TGG + chr3_2:15391402-15391421 Msa0396670:intron 40.0%
ACTGGGACTAAAACAAAACG+AGG - chr3_2:15391511-15391530 None:intergenic 40.0%
CAAAACGAGGCATATTTGCA+GGG - chr3_2:15391558-15391577 None:intergenic 40.0%
! TTTGTGATGATTTGCACACG+TGG + chr3_2:15391599-15391618 Msa0396670:intron 40.0%
! CCTGCAAATATGTCTCGTTT+TGG - chr3_2:15391767-15391786 None:intergenic 40.0%
CCAAAACGAGACATATTTGC+AGG + chr3_2:15391764-15391783 Msa0396670:intron 40.0%
ATCAAAAGCCTCAACAAACG+AGG - chr3_2:15392844-15392863 None:intergenic 40.0%
CTCGCTTATCTCAAAATTGC+AGG + chr3_2:15392875-15392894 Msa0396670:CDS 40.0%
TACAAGACATGCTATTAGGG+TGG + chr3_2:15393170-15393189 Msa0396670:intron 40.0%
! ATGCTATTAGGGTGGCTTTT+AGG + chr3_2:15393178-15393197 Msa0396670:intron 40.0%
! TACCTGCTTCTAAAGGAACT+CGG - chr3_2:15393536-15393555 None:intergenic 40.0%
! TCAGTGGTGTTAGAATCACC+AGG - chr3_2:15388795-15388814 None:intergenic 45.0%
GTAAGCCATCCTATGATCAG+TGG - chr3_2:15388811-15388830 None:intergenic 45.0%
TCCACCCAGAAATTGAACCT+AGG + chr3_2:15389210-15389229 Msa0396670:intron 45.0%
! ACCTAGGTTCAATTTCTGGG+TGG - chr3_2:15389214-15389233 None:intergenic 45.0%
TTGGTATTCGGTCATAGGAC+CGG + chr3_2:15389440-15389459 Msa0396670:intron 45.0%
!! AGATTCGGTGGTGAAAGAGT+AGG - chr3_2:15390682-15390701 None:intergenic 45.0%
GATTGTGAGGGAGAGAGATT+CGG - chr3_2:15390697-15390716 None:intergenic 45.0%
!! CACACTCGAGTTGATTGTGA+GGG - chr3_2:15390709-15390728 None:intergenic 45.0%
!! GTTGCTAGTCTTGGAGTCAT+TGG + chr3_2:15391411-15391430 Msa0396670:intron 45.0%
CCAAAACGAGGCATATTTGC+AGG - chr3_2:15391559-15391578 None:intergenic 45.0%
! CCTGCAAATATGCCTCGTTT+TGG + chr3_2:15391556-15391575 Msa0396670:intron 45.0%
CAAGGACCAAAACCAAAACG+AGG - chr3_2:15391571-15391590 None:intergenic 45.0%
!!! CTCGTTTTGGTTTTGGTCCT+TGG + chr3_2:15391569-15391588 Msa0396670:intron 45.0%
TCATCACAAAAGTGGGACCA+AGG - chr3_2:15391589-15391608 None:intergenic 45.0%
TTGGCATCTTTGAGCCTGTT+TGG - chr3_2:15393020-15393039 None:intergenic 45.0%
! AACCGAGTTCCTTTAGAAGC+AGG + chr3_2:15393531-15393550 Msa0396670:CDS 45.0%
! GTTCCTTTAGAAGCAGGTAG+AGG + chr3_2:15393537-15393556 Msa0396670:CDS 45.0%
CATCCTCTACCTGCTTCTAA+AGG - chr3_2:15393543-15393562 None:intergenic 45.0%
TGCTCTCTATGTGCTCTCCA+AGG + chr3_2:15388878-15388897 Msa0396670:CDS 50.0%
!! GCACACTCGAGTTGATTGTG+AGG - chr3_2:15390710-15390729 None:intergenic 50.0%
TGGCATCTCACCCTGATACA+AGG + chr3_2:15390948-15390967 Msa0396670:CDS 50.0%
!! GCTAGTCTTGGAGTCATTGG+TGG + chr3_2:15391414-15391433 Msa0396670:intron 50.0%
! AGTCATTGGTGGCTCGATGA+AGG + chr3_2:15391425-15391444 Msa0396670:intron 50.0%
AGCCTCAACAAACGAGGTGA+GGG - chr3_2:15392838-15392857 None:intergenic 50.0%
AAGCCTCAACAAACGAGGTG+AGG - chr3_2:15392839-15392858 None:intergenic 50.0%
TGTGAGGGAGAGAGATTCGG+TGG - chr3_2:15390694-15390713 None:intergenic 55.0%
CTCAACAAACGAGGTGAGGG+TGG - chr3_2:15392835-15392854 None:intergenic 55.0%
! CACCCTCACCTCGTTTGTTG+AGG + chr3_2:15392833-15392852 Msa0396670:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 15388732 15393563 15388732 ID=Msa0396670;Name=Msa0396670
chr3_2 mRNA 15388732 15393563 15388732 ID=Msa0396670-mRNA-1;Parent=Msa0396670;Name=Msa0396670-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.87|0.85|0.87|8|0|273
chr3_2 exon 15388732 15388899 15388732 ID=Msa0396670-mRNA-1:exon:3429;Parent=Msa0396670-mRNA-1
chr3_2 exon 15389932 15390003 15389932 ID=Msa0396670-mRNA-1:exon:3430;Parent=Msa0396670-mRNA-1
chr3_2 exon 15390661 15390750 15390661 ID=Msa0396670-mRNA-1:exon:3431;Parent=Msa0396670-mRNA-1
chr3_2 exon 15390944 15390991 15390944 ID=Msa0396670-mRNA-1:exon:3432;Parent=Msa0396670-mRNA-1
chr3_2 exon 15392505 15392600 15392505 ID=Msa0396670-mRNA-1:exon:3433;Parent=Msa0396670-mRNA-1
chr3_2 exon 15392706 15392896 15392706 ID=Msa0396670-mRNA-1:exon:3434;Parent=Msa0396670-mRNA-1
chr3_2 exon 15392989 15393058 15392989 ID=Msa0396670-mRNA-1:exon:3435;Parent=Msa0396670-mRNA-1
chr3_2 exon 15393477 15393563 15393477 ID=Msa0396670-mRNA-1:exon:3436;Parent=Msa0396670-mRNA-1
chr3_2 CDS 15388732 15388899 15388732 ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1
chr3_2 CDS 15389932 15390003 15389932 ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1
chr3_2 CDS 15390661 15390750 15390661 ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1
chr3_2 CDS 15390944 15390991 15390944 ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1
chr3_2 CDS 15392505 15392600 15392505 ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1
chr3_2 CDS 15392706 15392896 15392706 ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1
chr3_2 CDS 15392989 15393058 15392989 ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1
chr3_2 CDS 15393477 15393563 15393477 ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1
Gene Sequence

>Msa0396670

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACAATGCATCGTTTATAGCTTTTCCTGGTGATTCTAACACCACTGATCATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATACTTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTTGCACTACTTCAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGGTAATGTTAACACCAAAGAAGTCATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGTTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAAATGTTGCAACATTTATAATTCTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGCTTATCTCAAAATTGCAGGGCTAGAGTTGCATTAACAACTTATTTTCCAAACAGGCTCAAAGATGCCAATCTCATCAACTTTTTTCGTGATGATCCAAAAACTATGAGGTTGGTACTGTTGTTACATGAGAATGTTGGGGTGAACCGAGTTCCTTTAGAAGCAGGTAGAGGATGA

Protein sequence

>Msa0396670

MAHFTPQSLSTKNNASFIAFPGDSNTTDHRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEELGPLLWNTVGTIAVFLQEILSIYPTLSPPNLSPSQSTRVCNVLALLQCVASHPDTRISFLNGNVNTKEVIGFYLSSEIISLCLSNMQNGNELTKNVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNCRARVALTTYFPNRLKDANLINFFRDDPKTMRLVLLLHENVGVNRVPLEAGRG*