Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0396670 | XP_003598636.1 | 83.056 | 301 | 14 | 2 | 1 | 264 | 1 | 301 | 2.79e-171 | 485 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0396670 | sp|Q6P819|CNOT9_XENTR | 44.444 | 261 | 111 | 1 | 40 | 266 | 28 | 288 | 2.68e-68 | 216 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0396670 | Q2HW81 | 83.056 | 301 | 14 | 2 | 1 | 264 | 1 | 301 | 1.33e-171 | 485 |
Gene ID | Type | Classification |
---|---|---|
Msa0396670 | TR | Rcd1-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0396670 | MtrunA17_Chr7g0224601 | 53.465 | 303 | 100 | 3 | 12 | 273 | 2 | 304 | 2.83e-92 | 275 |
Msa0396670 | MtrunA17_Chr1g0177151 | 53.543 | 254 | 83 | 2 | 1 | 220 | 1 | 253 | 4.32e-90 | 268 |
Msa0396670 | MtrunA17_Chr8g0392781 | 45.507 | 345 | 116 | 4 | 1 | 273 | 1 | 345 | 4.49e-88 | 266 |
Msa0396670 | MtrunA17_Chr3g0099561 | 51.460 | 274 | 98 | 2 | 35 | 273 | 26 | 299 | 1.25e-84 | 255 |
Msa0396670 | MtrunA17_Chr3g0083811 | 96.552 | 116 | 4 | 0 | 149 | 264 | 1 | 116 | 6.12e-76 | 226 |
Msa0396670 | MtrunA17_Chr5g0444621 | 50.952 | 210 | 69 | 1 | 67 | 242 | 52 | 261 | 2.08e-62 | 197 |
Msa0396670 | MtrunA17_Chr6g0477171 | 52.041 | 196 | 60 | 1 | 59 | 220 | 48 | 243 | 1.14e-59 | 190 |
Msa0396670 | MtrunA17_Chr3g0083821 | 62.338 | 77 | 29 | 0 | 51 | 127 | 10 | 86 | 2.75e-26 | 100 |
Msa0396670 | MtrunA17_Chr6g0477181 | 57.627 | 59 | 22 | 1 | 1 | 56 | 1 | 59 | 4.27e-12 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0396670 | AT3G20800.1 | 48.601 | 286 | 113 | 1 | 22 | 273 | 26 | 311 | 1.01e-85 | 259 |
Msa0396670 | AT5G12980.1 | 45.091 | 275 | 116 | 2 | 28 | 267 | 28 | 302 | 3.16e-76 | 234 |
Msa0396670 | AT2G32550.2 | 28.980 | 245 | 124 | 5 | 50 | 248 | 67 | 307 | 4.69e-21 | 91.3 |
Msa0396670 | AT2G32550.3 | 29.060 | 234 | 116 | 5 | 61 | 248 | 39 | 268 | 8.57e-21 | 89.7 |
Msa0396670 | AT2G32550.1 | 28.241 | 216 | 105 | 5 | 79 | 248 | 2 | 213 | 8.01e-16 | 75.1 |
Find 43 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGAACTTGGACCTTTATTA+TGG | 0.221177 | 3_2:+15389948 | Msa0396670:CDS |
CTCGCTTATCTCAAAATTGC+AGG | 0.298861 | 3_2:+15392875 | Msa0396670:CDS |
AGAAATGAGATCCTTGTATC+AGG | 0.301701 | 3_2:-15390959 | None:intergenic |
ATAGAAACCTATGACTTCTT+TGG | 0.317203 | 3_2:-15392512 | None:intergenic |
TTGGCATCTTTGAGCCTGTT+TGG | 0.349625 | 3_2:-15393017 | None:intergenic |
CAATGTTCTTGCACTACTTC+AGG | 0.367374 | 3_2:+15390729 | Msa0396670:CDS |
TATATTAGACGATGATGGTT+TGG | 0.376298 | 3_2:+15392732 | Msa0396670:CDS |
CCAACAGTATTCCATAATAA+AGG | 0.383147 | 3_2:-15389959 | None:intergenic |
GTTAACACCAAAGAAGTCAT+AGG | 0.420089 | 3_2:+15392505 | Msa0396670:CDS |
TGTTGTTACATGAGAATGTT+GGG | 0.422120 | 3_2:+15393505 | Msa0396670:CDS |
TCAGAGCACCAAGTTATTTG+AGG | 0.428345 | 3_2:+15389928 | Msa0396670:intron |
TTCTTTGTTGAGAGCGATTG+AGG | 0.439462 | 3_2:-15388747 | None:intergenic |
GATTGTGAGGGAGAGAGATT+CGG | 0.440290 | 3_2:-15390694 | None:intergenic |
ATTCTAACACCACTGATCAT+AGG | 0.442748 | 3_2:+15388799 | Msa0396670:CDS |
AAAATTATATTAGACGATGA+TGG | 0.467412 | 3_2:+15392727 | Msa0396670:CDS |
CACCCTCACCTCGTTTGTTG+AGG | 0.472935 | 3_2:+15392833 | Msa0396670:CDS |
TGTTATTGAACTCAGCAATC+CGG | 0.481393 | 3_2:+15388842 | Msa0396670:CDS |
ACCAAGTTATTTGAGGAACT+TGG | 0.485648 | 3_2:+15389935 | Msa0396670:CDS |
AGATTCGGTGGTGAAAGAGT+AGG | 0.488495 | 3_2:-15390679 | None:intergenic |
AACCGAGTTCCTTTAGAAGC+AGG | 0.491153 | 3_2:+15393531 | Msa0396670:CDS |
CCTTTATTATGGAATACTGT+TGG | 0.492405 | 3_2:+15389959 | Msa0396670:CDS |
CATCCTCTACCTGCTTCTAA+AGG | 0.500981 | 3_2:-15393540 | None:intergenic |
GTTCCTTTAGAAGCAGGTAG+AGG | 0.520910 | 3_2:+15393537 | Msa0396670:CDS |
TCCAAGTTCCTCAAATAACT+TGG | 0.522228 | 3_2:-15389936 | None:intergenic |
TGGCATCTCACCCTGATACA+AGG | 0.537570 | 3_2:+15390948 | Msa0396670:CDS |
CTGTTGTTACATGAGAATGT+TGG | 0.540471 | 3_2:+15393504 | Msa0396670:CDS |
AGCCTCAACAAACGAGGTGA+GGG | 0.559488 | 3_2:-15392835 | None:intergenic |
TGTTTGTCTAATATGCAAAA+CGG | 0.565201 | 3_2:+15392559 | Msa0396670:CDS |
ACAAGGATCTCATTTCTCAA+TGG | 0.566776 | 3_2:+15390965 | Msa0396670:CDS |
AAGCCTCAACAAACGAGGTG+AGG | 0.569309 | 3_2:-15392836 | None:intergenic |
TGCTCTCTATGTGCTCTCCA+AGG | 0.584461 | 3_2:+15388878 | Msa0396670:CDS |
GAAATGAGATCCTTGTATCA+GGG | 0.596244 | 3_2:-15390958 | None:intergenic |
CACACTCGAGTTGATTGTGA+GGG | 0.603583 | 3_2:-15390706 | None:intergenic |
TAACACCACTGATCATAGGA+TGG | 0.625981 | 3_2:+15388803 | Msa0396670:CDS |
CTCAACAAACGAGGTGAGGG+TGG | 0.629401 | 3_2:-15392832 | None:intergenic |
TACCTGCTTCTAAAGGAACT+CGG | 0.631809 | 3_2:-15393533 | None:intergenic |
GATTGCTGAGTTCAATAACA+AGG | 0.649486 | 3_2:-15388839 | None:intergenic |
ATCAAAAGCCTCAACAAACG+AGG | 0.660997 | 3_2:-15392841 | None:intergenic |
GCACACTCGAGTTGATTGTG+AGG | 0.665692 | 3_2:-15390707 | None:intergenic |
GTAAGCCATCCTATGATCAG+TGG | 0.669763 | 3_2:-15388808 | None:intergenic |
TCAGTGGTGTTAGAATCACC+AGG | 0.685443 | 3_2:-15388792 | None:intergenic |
TGTGAGGGAGAGAGATTCGG+TGG | 0.689243 | 3_2:-15390691 | None:intergenic |
GTTGTTACATGAGAATGTTG+GGG | 0.746517 | 3_2:+15393506 | Msa0396670:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTATAATTGAATTGAA+AGG | + | chr3_2:15389086-15389105 | Msa0396670:intron | 10.0% |
!!! | TTTTTATAATTGAATTGAAA+GGG | + | chr3_2:15389087-15389106 | Msa0396670:intron | 10.0% |
!! | GAAAAATAAAAACATAAATT+TGG | - | chr3_2:15390335-15390354 | None:intergenic | 10.0% |
!!! | GAATATTTTTTTTTTGTTTA+AGG | + | chr3_2:15390563-15390582 | Msa0396670:intron | 10.0% |
!!! | CATATATATTTTTTACATTA+AGG | - | chr3_2:15390881-15390900 | None:intergenic | 10.0% |
!!! | AATTTTTTTTTTGTAGTTTT+TGG | + | chr3_2:15391531-15391550 | Msa0396670:intron | 10.0% |
!!! | TTAAAAGATATATATTTTAG+CGG | + | chr3_2:15392060-15392079 | Msa0396670:intron | 10.0% |
!! | AGTTATAATAAATTAATTGT+CGG | + | chr3_2:15392152-15392171 | Msa0396670:intron | 10.0% |
!!! | TACAATAATATCTAATTTTA+GGG | - | chr3_2:15392206-15392225 | None:intergenic | 10.0% |
!! | ATTATATGAAAATTGATATT+AGG | + | chr3_2:15392304-15392323 | Msa0396670:intron | 10.0% |
!! | AATACTCTATAATAATAAAT+TGG | - | chr3_2:15392631-15392650 | None:intergenic | 10.0% |
!! | ATATTAAATTATATCATATC+AGG | - | chr3_2:15393116-15393135 | None:intergenic | 10.0% |
!! | ATTAGTTAATAATAAATCAA+TGG | - | chr3_2:15393250-15393269 | None:intergenic | 10.0% |
!!! | GAACTTTTATACTAAAATTT+CGG | + | chr3_2:15389843-15389862 | Msa0396670:intron | 15.0% |
!! | ATAGATTCATAATCTAAAAA+TGG | - | chr3_2:15390280-15390299 | None:intergenic | 15.0% |
!! | ACTACAAAAAAAAAATTACT+GGG | - | chr3_2:15391528-15391547 | None:intergenic | 15.0% |
!! | AACTACAAAAAAAAAATTAC+TGG | - | chr3_2:15391529-15391548 | None:intergenic | 15.0% |
!!! | ATATTTCTTTTTGTAGTTTT+TGG | - | chr3_2:15391730-15391749 | None:intergenic | 15.0% |
!! | GACAATTAATTTATTATAAC+TGG | - | chr3_2:15392153-15392172 | None:intergenic | 15.0% |
!!! | CTACAATAATATCTAATTTT+AGG | - | chr3_2:15392207-15392226 | None:intergenic | 15.0% |
!! | AAAATTGATATTAGGTATTT+GGG | + | chr3_2:15392312-15392331 | Msa0396670:intron | 15.0% |
!! | TTAAGATTAAAAGTTTAATC+AGG | - | chr3_2:15392964-15392983 | None:intergenic | 15.0% |
!!! | TAAACTTTTAATCTTAAAAC+AGG | + | chr3_2:15392967-15392986 | Msa0396670:intron | 15.0% |
!!! | AAACTTTTAATCTTAAAACA+GGG | + | chr3_2:15392968-15392987 | Msa0396670:intron | 15.0% |
!!! | TTCATTTTTAATGTCTTTCA+TGG | + | chr3_2:15388929-15388948 | Msa0396670:intron | 20.0% |
!!! | TCATTTTTAATGTCTTTCAT+GGG | + | chr3_2:15388930-15388949 | Msa0396670:intron | 20.0% |
!! | TAATTGTTTCGTTATTGAAA+GGG | + | chr3_2:15389281-15389300 | Msa0396670:intron | 20.0% |
!!! | AAATTTTTTCAATGGTATTC+CGG | - | chr3_2:15389462-15389481 | None:intergenic | 20.0% |
!!! | AAGCTTCTAAATTTTTTCAA+TGG | - | chr3_2:15389470-15389489 | None:intergenic | 20.0% |
!!! | GATAGTGTGATTTTTTTTAA+TGG | + | chr3_2:15389549-15389568 | Msa0396670:intron | 20.0% |
!!! | AATCTTGATTTTACCATAAA+TGG | - | chr3_2:15389619-15389638 | None:intergenic | 20.0% |
!!! | TTACCATGTTTGTTTTATTT+TGG | + | chr3_2:15389821-15389840 | Msa0396670:intron | 20.0% |
!!! | ATTACATATTATTTTCTAGC+TGG | + | chr3_2:15390024-15390043 | Msa0396670:intron | 20.0% |
!!! | AATTTAGTTTTTAAACCTCT+AGG | + | chr3_2:15390484-15390503 | Msa0396670:intron | 20.0% |
!!! | ATTGATTTTCATGTATTTTG+GGG | - | chr3_2:15390818-15390837 | None:intergenic | 20.0% |
!!! | GATTGATTTTCATGTATTTT+GGG | - | chr3_2:15390819-15390838 | None:intergenic | 20.0% |
!!! | TGATTGATTTTCATGTATTT+TGG | - | chr3_2:15390820-15390839 | None:intergenic | 20.0% |
!!! | AATGTTTTTTTTATAGTGTG+TGG | + | chr3_2:15390928-15390947 | Msa0396670:intron | 20.0% |
!! | TATGGAGATATATAACTATT+TGG | + | chr3_2:15391122-15391141 | Msa0396670:intron | 20.0% |
!! | AGCTGCATATAATAAAAAAA+AGG | - | chr3_2:15391322-15391341 | None:intergenic | 20.0% |
!! | AGGAATGGATATAAATATAA+AGG | - | chr3_2:15391351-15391370 | None:intergenic | 20.0% |
!!! | TTTTGTTTTTGGCTAAAATA+TGG | + | chr3_2:15391465-15391484 | Msa0396670:intron | 20.0% |
!!! | TCTGCAAAATATTTTGTTTT+TGG | + | chr3_2:15391659-15391678 | Msa0396670:intron | 20.0% |
!!! | TATTTTGTTTTTGGAAATAG+TGG | + | chr3_2:15391668-15391687 | Msa0396670:intron | 20.0% |
!!! | TCAAAAACAAAATATTTTGC+AGG | + | chr3_2:15391702-15391721 | Msa0396670:intron | 20.0% |
!!! | CAAAAACAAAATATTTTGCA+GGG | + | chr3_2:15391703-15391722 | Msa0396670:intron | 20.0% |
!! | ACTACAAAAAGAAATATTAC+AGG | + | chr3_2:15391733-15391752 | Msa0396670:intron | 20.0% |
!! | CTACAAAAAGAAATATTACA+GGG | + | chr3_2:15391734-15391753 | Msa0396670:intron | 20.0% |
!! | AAAAAACAAAGGCTAAAATA+TGG | - | chr3_2:15391798-15391817 | None:intergenic | 20.0% |
!!! | AAATATATTTTCACATTGCA+AGG | - | chr3_2:15391887-15391906 | None:intergenic | 20.0% |
!! | TTCACACAATAAACTAATTA+AGG | + | chr3_2:15391966-15391985 | Msa0396670:intron | 20.0% |
!!! | ACAGTTTTTTTTTTTTTGGA+AGG | - | chr3_2:15392020-15392039 | None:intergenic | 20.0% |
!!! | CCATACAGTTTTTTTTTTTT+TGG | - | chr3_2:15392024-15392043 | None:intergenic | 20.0% |
!! | CCAAAAAAAAAAAAACTGTA+TGG | + | chr3_2:15392021-15392040 | Msa0396670:intron | 20.0% |
!!! | CAATGTTAGTAAAAGTTTTA+AGG | - | chr3_2:15392124-15392143 | None:intergenic | 20.0% |
!!! | CTTAAAACTTTTACTAACAT+TGG | + | chr3_2:15392122-15392141 | Msa0396670:intron | 20.0% |
!!! | ATTGTCGGTAAAAATTTTAA+CGG | + | chr3_2:15392167-15392186 | Msa0396670:intron | 20.0% |
!! | GAAAATTGATATTAGGTATT+TGG | + | chr3_2:15392311-15392330 | Msa0396670:intron | 20.0% |
!! | AAAATTATATTAGACGATGA+TGG | + | chr3_2:15392727-15392746 | Msa0396670:CDS | 20.0% |
!! | ATTGAATTCTCTCTTTATAA+AGG | - | chr3_2:15393409-15393428 | None:intergenic | 20.0% |
! | TTCACAAGTAATACAAATCT+TGG | + | chr3_2:15388954-15388973 | Msa0396670:intron | 25.0% |
! | ATGAGAACAAAGATGTTATT+AGG | - | chr3_2:15389056-15389075 | None:intergenic | 25.0% |
! | CTTTCAATAACGAAACAATT+AGG | - | chr3_2:15389282-15389301 | None:intergenic | 25.0% |
! | CTAATTGTTTCGTTATTGAA+AGG | + | chr3_2:15389280-15389299 | Msa0396670:intron | 25.0% |
!!! | CTTTTCAATTTTAATGCATC+TGG | + | chr3_2:15389398-15389417 | Msa0396670:intron | 25.0% |
!! | ATCAATTTTTGTCGAAAACT+TGG | + | chr3_2:15389421-15389440 | Msa0396670:intron | 25.0% |
!! | CTTTACTTTGACTTTAAATG+AGG | - | chr3_2:15389501-15389520 | None:intergenic | 25.0% |
! | AAAATCACACTATCAAATGT+CGG | - | chr3_2:15389543-15389562 | None:intergenic | 25.0% |
! | GTTCCAAAATAAAACAAACA+TGG | - | chr3_2:15389827-15389846 | None:intergenic | 25.0% |
!!! | TACTATTGCAGTATTTTTAC+AGG | + | chr3_2:15389982-15390001 | Msa0396670:CDS | 25.0% |
! | ATATTTGATGAAACACACAA+TGG | + | chr3_2:15390188-15390207 | Msa0396670:intron | 25.0% |
! | AATTTGGAGAAAGATATACA+TGG | - | chr3_2:15390319-15390338 | None:intergenic | 25.0% |
!!! | TTATTTTTCCAACTTTTACG+AGG | + | chr3_2:15390346-15390365 | Msa0396670:intron | 25.0% |
!! | TATTTTTCCAACTTTTACGA+GGG | + | chr3_2:15390347-15390366 | Msa0396670:intron | 25.0% |
! | ACTTAGAAAATATATGGTGA+TGG | + | chr3_2:15390372-15390391 | Msa0396670:intron | 25.0% |
!!! | TTAGCTCAAGGATTTTTTTT+AGG | + | chr3_2:15390440-15390459 | Msa0396670:intron | 25.0% |
!!! | TAGCTCAAGGATTTTTTTTA+GGG | + | chr3_2:15390441-15390460 | Msa0396670:intron | 25.0% |
!!! | TGCTGTTTTTTTTTTCTTTC+AGG | + | chr3_2:15390639-15390658 | Msa0396670:intron | 25.0% |
!!! | TTGATTTTCATGTATTTTGG+GGG | - | chr3_2:15390817-15390836 | None:intergenic | 25.0% |
! | TTATTCTGAATTACAATCCA+AGG | + | chr3_2:15391020-15391039 | Msa0396670:intron | 25.0% |
!! | GTTCTTTTGTGAAAATACTA+TGG | + | chr3_2:15391104-15391123 | Msa0396670:intron | 25.0% |
!!! | TGAAAAGTGTTTTGAATAAG+AGG | + | chr3_2:15391181-15391200 | Msa0396670:intron | 25.0% |
!!! | GAAAAGTGTTTTGAATAAGA+GGG | + | chr3_2:15391182-15391201 | Msa0396670:intron | 25.0% |
!!! | CTTTCCCATTTTTAACATAA+TGG | - | chr3_2:15391257-15391276 | None:intergenic | 25.0% |
!!! | TTAACTTGCTTGTTGTTTTA+AGG | - | chr3_2:15391371-15391390 | None:intergenic | 25.0% |
! | AAAAACAAAAGTTAGAAGGA+TGG | - | chr3_2:15391455-15391474 | None:intergenic | 25.0% |
!!! | ATCCTTCTAACTTTTGTTTT+TGG | + | chr3_2:15391454-15391473 | Msa0396670:intron | 25.0% |
! | TAAGGATTCTCTAAACTTTA+TGG | + | chr3_2:15391984-15392003 | Msa0396670:intron | 25.0% |
!!! | AAGTTTTAAGGACAGTTATA+AGG | - | chr3_2:15392112-15392131 | None:intergenic | 25.0% |
! | CAAAACGAAATAAATAAGCA+TGG | - | chr3_2:15392466-15392485 | None:intergenic | 25.0% |
!! | TGCTTATTTATTTCGTTTTG+TGG | + | chr3_2:15392466-15392485 | Msa0396670:intron | 25.0% |
! | TGTTTGTCTAATATGCAAAA+CGG | + | chr3_2:15392559-15392578 | Msa0396670:CDS | 25.0% |
! | TTCAACAATTCTTAAGATCA+TGG | - | chr3_2:15392915-15392934 | None:intergenic | 25.0% |
!!! | TAACAACTTATTTTCCAAAC+AGG | + | chr3_2:15393003-15393022 | Msa0396670:CDS | 25.0% |
! | ATATTACAAGACATGCTATT+AGG | + | chr3_2:15393166-15393185 | Msa0396670:intron | 25.0% |
! | TATTACAAGACATGCTATTA+GGG | + | chr3_2:15393167-15393186 | Msa0396670:intron | 25.0% |
!!! | TAAGTTTTGTGACACATTTA+TGG | + | chr3_2:15393306-15393325 | Msa0396670:intron | 25.0% |
!! | CATTTATGGTATTTTCAAAG+TGG | + | chr3_2:15393320-15393339 | Msa0396670:intron | 25.0% |
! | CTAGATATTGTTTCAATTTC+AGG | + | chr3_2:15393455-15393474 | Msa0396670:intron | 25.0% |
ACAAGTAATACAAATCTTGG+AGG | + | chr3_2:15388957-15388976 | Msa0396670:intron | 30.0% | |
TGTTATTAGGTCTAGCAAAA+GGG | - | chr3_2:15389043-15389062 | None:intergenic | 30.0% | |
ATGTTATTAGGTCTAGCAAA+AGG | - | chr3_2:15389044-15389063 | None:intergenic | 30.0% | |
! | TCTCCAGAATATTTTGTCTT+TGG | + | chr3_2:15389234-15389253 | Msa0396670:intron | 30.0% |
TTCACTGTTTAGTGTATCAT+GGG | + | chr3_2:15389304-15389323 | Msa0396670:intron | 30.0% | |
TTTGTCGAAAACTTGGTATT+CGG | + | chr3_2:15389428-15389447 | Msa0396670:intron | 30.0% | |
CCAACAGTATTCCATAATAA+AGG | - | chr3_2:15389962-15389981 | None:intergenic | 30.0% | |
CCTTTATTATGGAATACTGT+TGG | + | chr3_2:15389959-15389978 | Msa0396670:CDS | 30.0% | |
ATGAAACACACAATGGTATT+GGG | + | chr3_2:15390195-15390214 | Msa0396670:intron | 30.0% | |
TGAAATGATGATTGTTCTGA+AGG | - | chr3_2:15390257-15390276 | None:intergenic | 30.0% | |
AGGGAGACTTAGAAAATATA+TGG | + | chr3_2:15390366-15390385 | Msa0396670:intron | 30.0% | |
TTGAATAAGAGGGATGAATT+TGG | + | chr3_2:15391192-15391211 | Msa0396670:intron | 30.0% | |
CAGGCCATTATGTTAAAAAT+GGG | + | chr3_2:15391250-15391269 | Msa0396670:intron | 30.0% | |
!!! | TTGCTTGTTGTTTTAAGGAA+TGG | - | chr3_2:15391366-15391385 | None:intergenic | 30.0% |
! | TAACACACTTTGAGAATTTG+AGG | + | chr3_2:15391388-15391407 | Msa0396670:intron | 30.0% |
! | AACACACTTTGAGAATTTGA+GGG | + | chr3_2:15391389-15391408 | Msa0396670:intron | 30.0% |
AGCCAAAAACAAAAGTTAGA+AGG | - | chr3_2:15391459-15391478 | None:intergenic | 30.0% | |
ACATGATGATTGAACCTATT+CGG | + | chr3_2:15391623-15391642 | Msa0396670:intron | 30.0% | |
!! | AGACTATTTTTCTACCGAAT+AGG | - | chr3_2:15391640-15391659 | None:intergenic | 30.0% |
!!! | TTTGTTTTTGGAAATAGTGG+AGG | + | chr3_2:15391671-15391690 | Msa0396670:intron | 30.0% |
!!! | TTGTTTTTGGAAATAGTGGA+GGG | + | chr3_2:15391672-15391691 | Msa0396670:intron | 30.0% |
TCAGCTGCATTAAAAAACAA+AGG | - | chr3_2:15391809-15391828 | None:intergenic | 30.0% | |
TGAACTAATCCTAACAAGTT+GGG | - | chr3_2:15392347-15392366 | None:intergenic | 30.0% | |
ATGAACTAATCCTAACAAGT+TGG | - | chr3_2:15392348-15392367 | None:intergenic | 30.0% | |
TTGTGGTATTTGATATTCAC+AGG | + | chr3_2:15392483-15392502 | Msa0396670:intron | 30.0% | |
ATAGAAACCTATGACTTCTT+TGG | - | chr3_2:15392515-15392534 | None:intergenic | 30.0% | |
GATATACAACTTTCATTAGC+AGG | - | chr3_2:15392679-15392698 | None:intergenic | 30.0% | |
ATTATAAATGTTGCAACCTG+TGG | - | chr3_2:15392703-15392722 | None:intergenic | 30.0% | |
! | TATATTAGACGATGATGGTT+TGG | + | chr3_2:15392732-15392751 | Msa0396670:CDS | 30.0% |
!!! | GCTACAACAGAGAATTTTTT+TGG | + | chr3_2:15392766-15392785 | Msa0396670:CDS | 30.0% |
!! | ACGAAAAAAGTTGATGAGAT+TGG | - | chr3_2:15393039-15393058 | None:intergenic | 30.0% |
GTATGATACACACATTCAAT+AGG | - | chr3_2:15393211-15393230 | None:intergenic | 30.0% | |
TGTCACAAAACTTACTAAAG+AGG | - | chr3_2:15393300-15393319 | None:intergenic | 30.0% | |
TCAAAGTGGATACTAACTAT+AGG | + | chr3_2:15393334-15393353 | Msa0396670:intron | 30.0% | |
TGTTGTTACATGAGAATGTT+GGG | + | chr3_2:15393505-15393524 | Msa0396670:CDS | 30.0% | |
ATTCTAACACCACTGATCAT+AGG | + | chr3_2:15388799-15388818 | Msa0396670:CDS | 35.0% | |
GATTGCTGAGTTCAATAACA+AGG | - | chr3_2:15388842-15388861 | None:intergenic | 35.0% | |
TGTTATTGAACTCAGCAATC+CGG | + | chr3_2:15388842-15388861 | Msa0396670:CDS | 35.0% | |
!!! | AGAGCATTTTCTCTAAGATC+CGG | - | chr3_2:15388864-15388883 | None:intergenic | 35.0% |
CGATAGATATGTAAGAACCT+TGG | - | chr3_2:15388898-15388917 | None:intergenic | 35.0% | |
! | AAAGGGTTTAATGTTGGTAG+AGG | - | chr3_2:15389026-15389045 | None:intergenic | 35.0% |
CTAGCAAAAGGGTTTAATGT+TGG | - | chr3_2:15389032-15389051 | None:intergenic | 35.0% | |
TGTTTACGCTTCACTTCTTA+GGG | + | chr3_2:15389125-15389144 | Msa0396670:intron | 35.0% | |
GGAAATGAGACCTGATAATT+TGG | + | chr3_2:15389147-15389166 | Msa0396670:intron | 35.0% | |
TCTGGTAGGTCAATAAAATC+TGG | + | chr3_2:15389176-15389195 | Msa0396670:intron | 35.0% | |
AGAACCTAGGTTCAATTTCT+GGG | - | chr3_2:15389217-15389236 | None:intergenic | 35.0% | |
! | CAAAATATTCTGGAGAACCT+AGG | - | chr3_2:15389230-15389249 | None:intergenic | 35.0% |
CCACCAAAGACAAAATATTC+TGG | - | chr3_2:15389240-15389259 | None:intergenic | 35.0% | |
! | CCAGAATATTTTGTCTTTGG+TGG | + | chr3_2:15389237-15389256 | Msa0396670:intron | 35.0% |
GTTCACTGTTTAGTGTATCA+TGG | + | chr3_2:15389303-15389322 | Msa0396670:intron | 35.0% | |
AAAACTTGGTATTCGGTCAT+AGG | + | chr3_2:15389435-15389454 | Msa0396670:intron | 35.0% | |
GACGACATCTAATCCATTTA+TGG | + | chr3_2:15389603-15389622 | Msa0396670:intron | 35.0% | |
AATCAAGATTACTATCGCAC+AGG | + | chr3_2:15389629-15389648 | Msa0396670:intron | 35.0% | |
ACCAAGTTATTTGAGGAACT+TGG | + | chr3_2:15389935-15389954 | Msa0396670:CDS | 35.0% | |
TCCAAGTTCCTCAAATAACT+TGG | - | chr3_2:15389939-15389958 | None:intergenic | 35.0% | |
AGGAACTTGGACCTTTATTA+TGG | + | chr3_2:15389948-15389967 | Msa0396670:CDS | 35.0% | |
TTGTGCATGTATCTTACTTG+TGG | + | chr3_2:15390147-15390166 | Msa0396670:intron | 35.0% | |
GATGAAACACACAATGGTAT+TGG | + | chr3_2:15390194-15390213 | Msa0396670:intron | 35.0% | |
GAAGGATTGTAATACGACAA+AGG | - | chr3_2:15390239-15390258 | None:intergenic | 35.0% | |
TGGAGAAAGATATACATGGT+AGG | - | chr3_2:15390315-15390334 | None:intergenic | 35.0% | |
TTTCAAGAGATGTTAGCTCA+AGG | + | chr3_2:15390428-15390447 | Msa0396670:intron | 35.0% | |
GATTTGAACTTCTTTCCTAG+AGG | - | chr3_2:15390502-15390521 | None:intergenic | 35.0% | |
!! | GGTCATTTTACAGTTGTTTG+AGG | - | chr3_2:15390526-15390545 | None:intergenic | 35.0% |
ATTCATAAGAGTCGCACTAA+TGG | - | chr3_2:15390547-15390566 | None:intergenic | 35.0% | |
GAAATGAGATCCTTGTATCA+GGG | - | chr3_2:15390961-15390980 | None:intergenic | 35.0% | |
AGAAATGAGATCCTTGTATC+AGG | - | chr3_2:15390962-15390981 | None:intergenic | 35.0% | |
ACAAGGATCTCATTTCTCAA+TGG | + | chr3_2:15390965-15390984 | Msa0396670:CDS | 35.0% | |
!! | CAACTTGTTACATACAACCT+TGG | - | chr3_2:15391040-15391059 | None:intergenic | 35.0% |
AAGTTATTGCAACCAAAAGC+TGG | - | chr3_2:15391229-15391248 | None:intergenic | 35.0% | |
!! | TTTTGGTTGCAATAACTTGC+AGG | + | chr3_2:15391231-15391250 | Msa0396670:intron | 35.0% |
GCAGGCCATTATGTTAAAAA+TGG | + | chr3_2:15391249-15391268 | Msa0396670:intron | 35.0% | |
CAAAACGAGGCATATTTACA+GGG | - | chr3_2:15391498-15391517 | None:intergenic | 35.0% | |
ACAAAACGAGGCATATTTAC+AGG | - | chr3_2:15391499-15391518 | None:intergenic | 35.0% | |
!!! | AATATGCCTCGTTTTGGTTT+TGG | + | chr3_2:15391562-15391581 | Msa0396670:intron | 35.0% |
GTGCAAATCATCACAAAAGT+GGG | - | chr3_2:15391596-15391615 | None:intergenic | 35.0% | |
TGTGCAAATCATCACAAAAG+TGG | - | chr3_2:15391597-15391616 | None:intergenic | 35.0% | |
CAAAACGAGACATATTTGCA+GGG | + | chr3_2:15391765-15391784 | Msa0396670:intron | 35.0% | |
AGGACAGTTATAAGGAATGT+TGG | - | chr3_2:15392104-15392123 | None:intergenic | 35.0% | |
! | ACTTACAAACCCAACTTGTT+AGG | + | chr3_2:15392335-15392354 | Msa0396670:intron | 35.0% |
TTAGTTCATCTACATCACGA+AGG | + | chr3_2:15392359-15392378 | Msa0396670:intron | 35.0% | |
TAGTTCATCTACATCACGAA+GGG | + | chr3_2:15392360-15392379 | Msa0396670:intron | 35.0% | |
GTTAACACCAAAGAAGTCAT+AGG | + | chr3_2:15392505-15392524 | Msa0396670:CDS | 35.0% | |
!! | GCAGGTATTGGTAACAAAAA+TGG | - | chr3_2:15392661-15392680 | None:intergenic | 35.0% |
CAACTTTCATTAGCAGGTAT+TGG | - | chr3_2:15392673-15392692 | None:intergenic | 35.0% | |
TGAAAGTTGTATATCTCCAC+AGG | + | chr3_2:15392684-15392703 | Msa0396670:intron | 35.0% | |
!!! | TCGAGTTTTGAACATGATGT+TGG | + | chr3_2:15392795-15392814 | Msa0396670:CDS | 35.0% |
CTTATCTCAAAATTGCAGGT+TGG | + | chr3_2:15392879-15392898 | Msa0396670:intron | 35.0% | |
AGGATGATCCAAAAACTATG+AGG | + | chr3_2:15393475-15393494 | Msa0396670:intron | 35.0% | |
TGATCCAAAAACTATGAGGT+TGG | + | chr3_2:15393479-15393498 | Msa0396670:CDS | 35.0% | |
! | AGTACCAACCTCATAGTTTT+TGG | - | chr3_2:15393486-15393505 | None:intergenic | 35.0% |
CTGTTGTTACATGAGAATGT+TGG | + | chr3_2:15393504-15393523 | Msa0396670:CDS | 35.0% | |
GTTGTTACATGAGAATGTTG+GGG | + | chr3_2:15393506-15393525 | Msa0396670:CDS | 35.0% | |
TTCTTTGTTGAGAGCGATTG+AGG | - | chr3_2:15388750-15388769 | None:intergenic | 40.0% | |
! | GCATCGTTTATAGCTTTTCC+TGG | + | chr3_2:15388774-15388793 | Msa0396670:CDS | 40.0% |
TAACACCACTGATCATAGGA+TGG | + | chr3_2:15388803-15388822 | Msa0396670:CDS | 40.0% | |
GTGTTTACGCTTCACTTCTT+AGG | + | chr3_2:15389124-15389143 | Msa0396670:intron | 40.0% | |
GTTTACGCTTCACTTCTTAG+GGG | + | chr3_2:15389126-15389145 | Msa0396670:intron | 40.0% | |
CAGACGAACTCCAAATTATC+AGG | - | chr3_2:15389160-15389179 | None:intergenic | 40.0% | |
! | CTGATAATTTGGAGTTCGTC+TGG | + | chr3_2:15389158-15389177 | Msa0396670:intron | 40.0% |
! | TAATTTGGAGTTCGTCTGGT+AGG | + | chr3_2:15389162-15389181 | Msa0396670:intron | 40.0% |
GAGAACCTAGGTTCAATTTC+TGG | - | chr3_2:15389218-15389237 | None:intergenic | 40.0% | |
! | ACGAAACAATTAGGCTCTAG+TGG | - | chr3_2:15389273-15389292 | None:intergenic | 40.0% |
ATCACACTATCAAATGTCGG+TGG | - | chr3_2:15389540-15389559 | None:intergenic | 40.0% | |
! | TCAGAGCACCAAGTTATTTG+AGG | + | chr3_2:15389928-15389947 | Msa0396670:intron | 40.0% |
TAAGTCTCCCTCGTAAAAGT+TGG | - | chr3_2:15390357-15390376 | None:intergenic | 40.0% | |
CAATGTTCTTGCACTACTTC+AGG | + | chr3_2:15390729-15390748 | Msa0396670:CDS | 40.0% | |
! | GATTCTCTATGACCAGCTTT+TGG | + | chr3_2:15391214-15391233 | Msa0396670:intron | 40.0% |
! | AATTTGAGGGTTGCTAGTCT+TGG | + | chr3_2:15391402-15391421 | Msa0396670:intron | 40.0% |
ACTGGGACTAAAACAAAACG+AGG | - | chr3_2:15391511-15391530 | None:intergenic | 40.0% | |
CAAAACGAGGCATATTTGCA+GGG | - | chr3_2:15391558-15391577 | None:intergenic | 40.0% | |
! | TTTGTGATGATTTGCACACG+TGG | + | chr3_2:15391599-15391618 | Msa0396670:intron | 40.0% |
! | CCTGCAAATATGTCTCGTTT+TGG | - | chr3_2:15391767-15391786 | None:intergenic | 40.0% |
CCAAAACGAGACATATTTGC+AGG | + | chr3_2:15391764-15391783 | Msa0396670:intron | 40.0% | |
ATCAAAAGCCTCAACAAACG+AGG | - | chr3_2:15392844-15392863 | None:intergenic | 40.0% | |
CTCGCTTATCTCAAAATTGC+AGG | + | chr3_2:15392875-15392894 | Msa0396670:CDS | 40.0% | |
TACAAGACATGCTATTAGGG+TGG | + | chr3_2:15393170-15393189 | Msa0396670:intron | 40.0% | |
! | ATGCTATTAGGGTGGCTTTT+AGG | + | chr3_2:15393178-15393197 | Msa0396670:intron | 40.0% |
! | TACCTGCTTCTAAAGGAACT+CGG | - | chr3_2:15393536-15393555 | None:intergenic | 40.0% |
! | TCAGTGGTGTTAGAATCACC+AGG | - | chr3_2:15388795-15388814 | None:intergenic | 45.0% |
GTAAGCCATCCTATGATCAG+TGG | - | chr3_2:15388811-15388830 | None:intergenic | 45.0% | |
TCCACCCAGAAATTGAACCT+AGG | + | chr3_2:15389210-15389229 | Msa0396670:intron | 45.0% | |
! | ACCTAGGTTCAATTTCTGGG+TGG | - | chr3_2:15389214-15389233 | None:intergenic | 45.0% |
TTGGTATTCGGTCATAGGAC+CGG | + | chr3_2:15389440-15389459 | Msa0396670:intron | 45.0% | |
!! | AGATTCGGTGGTGAAAGAGT+AGG | - | chr3_2:15390682-15390701 | None:intergenic | 45.0% |
GATTGTGAGGGAGAGAGATT+CGG | - | chr3_2:15390697-15390716 | None:intergenic | 45.0% | |
!! | CACACTCGAGTTGATTGTGA+GGG | - | chr3_2:15390709-15390728 | None:intergenic | 45.0% |
!! | GTTGCTAGTCTTGGAGTCAT+TGG | + | chr3_2:15391411-15391430 | Msa0396670:intron | 45.0% |
CCAAAACGAGGCATATTTGC+AGG | - | chr3_2:15391559-15391578 | None:intergenic | 45.0% | |
! | CCTGCAAATATGCCTCGTTT+TGG | + | chr3_2:15391556-15391575 | Msa0396670:intron | 45.0% |
CAAGGACCAAAACCAAAACG+AGG | - | chr3_2:15391571-15391590 | None:intergenic | 45.0% | |
!!! | CTCGTTTTGGTTTTGGTCCT+TGG | + | chr3_2:15391569-15391588 | Msa0396670:intron | 45.0% |
TCATCACAAAAGTGGGACCA+AGG | - | chr3_2:15391589-15391608 | None:intergenic | 45.0% | |
TTGGCATCTTTGAGCCTGTT+TGG | - | chr3_2:15393020-15393039 | None:intergenic | 45.0% | |
! | AACCGAGTTCCTTTAGAAGC+AGG | + | chr3_2:15393531-15393550 | Msa0396670:CDS | 45.0% |
! | GTTCCTTTAGAAGCAGGTAG+AGG | + | chr3_2:15393537-15393556 | Msa0396670:CDS | 45.0% |
CATCCTCTACCTGCTTCTAA+AGG | - | chr3_2:15393543-15393562 | None:intergenic | 45.0% | |
TGCTCTCTATGTGCTCTCCA+AGG | + | chr3_2:15388878-15388897 | Msa0396670:CDS | 50.0% | |
!! | GCACACTCGAGTTGATTGTG+AGG | - | chr3_2:15390710-15390729 | None:intergenic | 50.0% |
TGGCATCTCACCCTGATACA+AGG | + | chr3_2:15390948-15390967 | Msa0396670:CDS | 50.0% | |
!! | GCTAGTCTTGGAGTCATTGG+TGG | + | chr3_2:15391414-15391433 | Msa0396670:intron | 50.0% |
! | AGTCATTGGTGGCTCGATGA+AGG | + | chr3_2:15391425-15391444 | Msa0396670:intron | 50.0% |
AGCCTCAACAAACGAGGTGA+GGG | - | chr3_2:15392838-15392857 | None:intergenic | 50.0% | |
AAGCCTCAACAAACGAGGTG+AGG | - | chr3_2:15392839-15392858 | None:intergenic | 50.0% | |
TGTGAGGGAGAGAGATTCGG+TGG | - | chr3_2:15390694-15390713 | None:intergenic | 55.0% | |
CTCAACAAACGAGGTGAGGG+TGG | - | chr3_2:15392835-15392854 | None:intergenic | 55.0% | |
! | CACCCTCACCTCGTTTGTTG+AGG | + | chr3_2:15392833-15392852 | Msa0396670:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 15388732 | 15393563 | 15388732 | ID=Msa0396670;Name=Msa0396670 |
chr3_2 | mRNA | 15388732 | 15393563 | 15388732 | ID=Msa0396670-mRNA-1;Parent=Msa0396670;Name=Msa0396670-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.87|0.85|0.87|8|0|273 |
chr3_2 | exon | 15388732 | 15388899 | 15388732 | ID=Msa0396670-mRNA-1:exon:3429;Parent=Msa0396670-mRNA-1 |
chr3_2 | exon | 15389932 | 15390003 | 15389932 | ID=Msa0396670-mRNA-1:exon:3430;Parent=Msa0396670-mRNA-1 |
chr3_2 | exon | 15390661 | 15390750 | 15390661 | ID=Msa0396670-mRNA-1:exon:3431;Parent=Msa0396670-mRNA-1 |
chr3_2 | exon | 15390944 | 15390991 | 15390944 | ID=Msa0396670-mRNA-1:exon:3432;Parent=Msa0396670-mRNA-1 |
chr3_2 | exon | 15392505 | 15392600 | 15392505 | ID=Msa0396670-mRNA-1:exon:3433;Parent=Msa0396670-mRNA-1 |
chr3_2 | exon | 15392706 | 15392896 | 15392706 | ID=Msa0396670-mRNA-1:exon:3434;Parent=Msa0396670-mRNA-1 |
chr3_2 | exon | 15392989 | 15393058 | 15392989 | ID=Msa0396670-mRNA-1:exon:3435;Parent=Msa0396670-mRNA-1 |
chr3_2 | exon | 15393477 | 15393563 | 15393477 | ID=Msa0396670-mRNA-1:exon:3436;Parent=Msa0396670-mRNA-1 |
chr3_2 | CDS | 15388732 | 15388899 | 15388732 | ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1 |
chr3_2 | CDS | 15389932 | 15390003 | 15389932 | ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1 |
chr3_2 | CDS | 15390661 | 15390750 | 15390661 | ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1 |
chr3_2 | CDS | 15390944 | 15390991 | 15390944 | ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1 |
chr3_2 | CDS | 15392505 | 15392600 | 15392505 | ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1 |
chr3_2 | CDS | 15392706 | 15392896 | 15392706 | ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1 |
chr3_2 | CDS | 15392989 | 15393058 | 15392989 | ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1 |
chr3_2 | CDS | 15393477 | 15393563 | 15393477 | ID=Msa0396670-mRNA-1:cds;Parent=Msa0396670-mRNA-1 |
Gene Sequence |
Protein sequence |