Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397940 | XP_040871674.1 | 67.939 | 131 | 33 | 2 | 4 | 128 | 152 | 279 | 1.46e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397940 | sp|Q8W4J8|TIF7_ARATH | 39.844 | 128 | 58 | 4 | 13 | 128 | 117 | 237 | 1.60e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397940 | I1K5Q1 | 69.531 | 128 | 30 | 2 | 7 | 128 | 184 | 308 | 3.48e-49 | 169 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0397940 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397940 | MtrunA17_Chr1g0161031 | 48.052 | 154 | 47 | 2 | 8 | 128 | 167 | 320 | 4.58e-30 | 110 |
| Msa0397940 | MtrunA17_Chr6g0478581 | 27.419 | 186 | 64 | 4 | 14 | 128 | 193 | 378 | 8.33e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397940 | AT1G70700.1 | 39.844 | 128 | 58 | 4 | 13 | 128 | 117 | 237 | 1.62e-14 | 68.2 |
| Msa0397940 | AT1G70700.3 | 39.844 | 128 | 58 | 4 | 13 | 128 | 117 | 237 | 1.66e-14 | 68.6 |
| Msa0397940 | AT1G70700.2 | 35.000 | 120 | 51 | 3 | 13 | 128 | 117 | 213 | 5.59e-13 | 63.9 |
Find 37 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATGGCATCGATTACTTT+TGG | 0.271813 | 3_2:-18169207 | None:intergenic |
| GGAGGCTCGGCATTGCTAAC+AGG | 0.367844 | 3_2:-18169186 | None:intergenic |
| GTATCTATTTCATCGAATAC+TGG | 0.396664 | 3_2:+18169090 | Msa0397940:CDS |
| TTTCTCGCAGTTAAAGCAAC+TGG | 0.434412 | 3_2:+18169150 | Msa0397940:CDS |
| GCCATTACCATGCTGGTGTC+AGG | 0.443156 | 3_2:+18169222 | Msa0397940:CDS |
| GAGGAGGGTGGTGCATTTGA+AGG | 0.446466 | 3_2:-18169051 | None:intergenic |
| TCGAATACTGGTGCACAGTC+AGG | 0.451696 | 3_2:+18169102 | Msa0397940:CDS |
| CGCGTAGAAGATGGTAAGTT+GGG | 0.452743 | 3_2:-18168581 | None:intergenic |
| CAGAGAGATACCTTGTCAGC+AGG | 0.487570 | 3_2:-18168631 | None:intergenic |
| TCAAATGCACCACCCTCCTC+TGG | 0.491435 | 3_2:+18169054 | Msa0397940:CDS |
| TCAGGCTCGGAAAGCATCCT+TGG | 0.496291 | 3_2:+18169401 | Msa0397940:CDS |
| ACCTGACACCAGCATGGTAA+TGG | 0.513597 | 3_2:-18169223 | None:intergenic |
| CACAGAAAAGTTCAGGCACC+TGG | 0.524123 | 3_2:+18169006 | Msa0397940:intron |
| GACAGTACCCGCGTAGAAGA+TGG | 0.529249 | 3_2:-18168590 | None:intergenic |
| CCGCGTAGAAGATGGTAAGT+TGG | 0.530718 | 3_2:-18168582 | None:intergenic |
| CAACTTACCATCTTCTACGC+GGG | 0.531973 | 3_2:+18168583 | Msa0397940:CDS |
| CTCACGAGCACACCGTCACC+AGG | 0.542238 | 3_2:-18169024 | None:intergenic |
| GTATTCGATGAAATAGATAC+AGG | 0.544463 | 3_2:-18169087 | None:intergenic |
| GGCATTGCTAACAGGAGTGG+TGG | 0.550160 | 3_2:-18169178 | None:intergenic |
| AGTTGGGAAGAATGCAGAGA+TGG | 0.555952 | 3_2:-18168565 | None:intergenic |
| ATGCAGCGATACCTCAGGCT+CGG | 0.560553 | 3_2:+18169388 | Msa0397940:intron |
| AATCGATGCCATTACCATGC+TGG | 0.562603 | 3_2:+18169215 | Msa0397940:CDS |
| ACTGGTGCACAGTCAGGCAG+TGG | 0.567791 | 3_2:+18169108 | Msa0397940:CDS |
| CAATGACATCCCTGCTGACA+AGG | 0.569187 | 3_2:+18168621 | Msa0397940:CDS |
| GATGAAATAGATACAGGACT+TGG | 0.575424 | 3_2:-18169081 | None:intergenic |
| AAAGTTCAGGCACCTGGTGA+CGG | 0.580555 | 3_2:+18169012 | Msa0397940:intron |
| AGAGAGATACCTTGTCAGCA+GGG | 0.598018 | 3_2:-18168630 | None:intergenic |
| ACTGCTGGTCAGAACATGAA+TGG | 0.611701 | 3_2:+18168360 | None:intergenic |
| CTCGGCATTGCTAACAGGAG+TGG | 0.620116 | 3_2:-18169181 | None:intergenic |
| GCATTGCTAACAGGAGTGGT+GGG | 0.638959 | 3_2:-18169177 | None:intergenic |
| AAGGATGCTTTCCGAGCCTG+AGG | 0.641286 | 3_2:-18169399 | None:intergenic |
| AGGACTTGGATGACCAGAGG+AGG | 0.643414 | 3_2:-18169067 | None:intergenic |
| GGACTTGGATGACCAGAGGA+GGG | 0.651250 | 3_2:-18169066 | None:intergenic |
| CAACATACCTGACACCAGCA+TGG | 0.665960 | 3_2:-18169229 | None:intergenic |
| TACAGGACTTGGATGACCAG+AGG | 0.680767 | 3_2:-18169070 | None:intergenic |
| CTTGGATGACCAGAGGAGGG+TGG | 0.682495 | 3_2:-18169063 | None:intergenic |
| CCAACTTACCATCTTCTACG+CGG | 0.690002 | 3_2:+18168582 | Msa0397940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATGATTGACTTTT+AGG | + | chr3_2:18168470-18168489 | Msa0397940:intron | 15.0% |
| !!! | TAATTTTATGATTGACTTTT+AGG | + | chr3_2:18168470-18168489 | Msa0397940:intron | 15.0% |
| !! | CCTTGTATTCATTTATTTAT+AGG | - | chr3_2:18168672-18168691 | None:intergenic | 20.0% |
| !! | CCTATAAATAAATGAATACA+AGG | + | chr3_2:18168669-18168688 | Msa0397940:intron | 20.0% |
| !! | TAAATGAATACAAGGTAAAA+AGG | + | chr3_2:18168677-18168696 | Msa0397940:intron | 20.0% |
| !!! | TTTTTCGTTAACCAAATTAT+TGG | - | chr3_2:18168881-18168900 | None:intergenic | 20.0% |
| !! | ATTTGGTTAACGAAAAAATT+TGG | + | chr3_2:18168884-18168903 | Msa0397940:intron | 20.0% |
| !! | TTGTTTATTGAAATCTTGTT+TGG | + | chr3_2:18169287-18169306 | Msa0397940:intron | 20.0% |
| !!! | TGTTTATTGAAATCTTGTTT+GGG | + | chr3_2:18169288-18169307 | Msa0397940:intron | 20.0% |
| !! | CCTTGTATTCATTTATTTAT+AGG | - | chr3_2:18168672-18168691 | None:intergenic | 20.0% |
| !! | CCTATAAATAAATGAATACA+AGG | + | chr3_2:18168669-18168688 | Msa0397940:intron | 20.0% |
| !! | TAAATGAATACAAGGTAAAA+AGG | + | chr3_2:18168677-18168696 | Msa0397940:intron | 20.0% |
| !!! | TTTTTCGTTAACCAAATTAT+TGG | - | chr3_2:18168881-18168900 | None:intergenic | 20.0% |
| !! | ATTTGGTTAACGAAAAAATT+TGG | + | chr3_2:18168884-18168903 | Msa0397940:intron | 20.0% |
| !! | TTGTTTATTGAAATCTTGTT+TGG | + | chr3_2:18169287-18169306 | Msa0397940:intron | 20.0% |
| !!! | TGTTTATTGAAATCTTGTTT+GGG | + | chr3_2:18169288-18169307 | Msa0397940:intron | 20.0% |
| !! | GTTTATTGAAATCTTGTTTG+GGG | + | chr3_2:18169289-18169308 | Msa0397940:intron | 25.0% |
| !! | GTTTATTGAAATCTTGTTTG+GGG | + | chr3_2:18169289-18169308 | Msa0397940:intron | 25.0% |
| !! | ATGATTGACTTTTAGGTGTA+CGG | + | chr3_2:18168477-18168496 | Msa0397940:intron | 30.0% |
| GTATTCGATGAAATAGATAC+AGG | - | chr3_2:18169090-18169109 | None:intergenic | 30.0% | |
| GTATCTATTTCATCGAATAC+TGG | + | chr3_2:18169090-18169109 | Msa0397940:CDS | 30.0% | |
| CCAATTGCAATAATGAGAAA+TGG | - | chr3_2:18169261-18169280 | None:intergenic | 30.0% | |
| CCATTTCTCATTATTGCAAT+TGG | + | chr3_2:18169258-18169277 | Msa0397940:intron | 30.0% | |
| !! | ATGATTGACTTTTAGGTGTA+CGG | + | chr3_2:18168477-18168496 | Msa0397940:intron | 30.0% |
| GTATTCGATGAAATAGATAC+AGG | - | chr3_2:18169090-18169109 | None:intergenic | 30.0% | |
| GTATCTATTTCATCGAATAC+TGG | + | chr3_2:18169090-18169109 | Msa0397940:CDS | 30.0% | |
| CCAATTGCAATAATGAGAAA+TGG | - | chr3_2:18169261-18169280 | None:intergenic | 30.0% | |
| CCATTTCTCATTATTGCAAT+TGG | + | chr3_2:18169258-18169277 | Msa0397940:intron | 30.0% | |
| ! | ATGTAATGTTTGGTGAACTG+TGG | - | chr3_2:18168703-18168722 | None:intergenic | 35.0% |
| CAGTTCACCAAACATTACAT+TGG | + | chr3_2:18168703-18168722 | Msa0397940:intron | 35.0% | |
| ACTAGGACCAATGTAATGTT+TGG | - | chr3_2:18168713-18168732 | None:intergenic | 35.0% | |
| GATGAAATAGATACAGGACT+TGG | - | chr3_2:18169084-18169103 | None:intergenic | 35.0% | |
| !!! | GTAATGGCATCGATTACTTT+TGG | - | chr3_2:18169210-18169229 | None:intergenic | 35.0% |
| !! | CTTTTCTAAAAATCGAGCCA+AGG | - | chr3_2:18169421-18169440 | None:intergenic | 35.0% |
| !! | TCGATTTTTAGAAAAGCGCA+AGG | + | chr3_2:18169425-18169444 | Msa0397940:CDS | 35.0% |
| !! | TTTTAGAAAAGCGCAAGGAA+AGG | + | chr3_2:18169430-18169449 | Msa0397940:CDS | 35.0% |
| ! | ATGTAATGTTTGGTGAACTG+TGG | - | chr3_2:18168703-18168722 | None:intergenic | 35.0% |
| CAGTTCACCAAACATTACAT+TGG | + | chr3_2:18168703-18168722 | Msa0397940:intron | 35.0% | |
| ACTAGGACCAATGTAATGTT+TGG | - | chr3_2:18168713-18168732 | None:intergenic | 35.0% | |
| GATGAAATAGATACAGGACT+TGG | - | chr3_2:18169084-18169103 | None:intergenic | 35.0% | |
| !!! | GTAATGGCATCGATTACTTT+TGG | - | chr3_2:18169210-18169229 | None:intergenic | 35.0% |
| !! | CTTTTCTAAAAATCGAGCCA+AGG | - | chr3_2:18169421-18169440 | None:intergenic | 35.0% |
| !! | TCGATTTTTAGAAAAGCGCA+AGG | + | chr3_2:18169425-18169444 | Msa0397940:CDS | 35.0% |
| !! | TTTTAGAAAAGCGCAAGGAA+AGG | + | chr3_2:18169430-18169449 | Msa0397940:CDS | 35.0% |
| TACATTGGTCCTAGTGAAAC+TGG | + | chr3_2:18168718-18168737 | Msa0397940:intron | 40.0% | |
| ATGGGGAAAAAATGGTTGAG+AGG | + | chr3_2:18168783-18168802 | Msa0397940:intron | 40.0% | |
| !! | CTGATGACTAGTCTCTGTTT+GGG | - | chr3_2:18168840-18168859 | None:intergenic | 40.0% |
| ! | AGACTAGTCATCAGCAAAGT+CGG | + | chr3_2:18168846-18168865 | Msa0397940:intron | 40.0% |
| GGTGGATCACACCAATAATT+TGG | + | chr3_2:18168867-18168886 | Msa0397940:intron | 40.0% | |
| GTTAAGCTTGACTATGGTCA+AGG | - | chr3_2:18168910-18168929 | None:intergenic | 40.0% | |
| TTTCTCGCAGTTAAAGCAAC+TGG | + | chr3_2:18169150-18169169 | Msa0397940:CDS | 40.0% | |
| !! | ATCGATTACTTTTGGAGGCT+CGG | - | chr3_2:18169202-18169221 | None:intergenic | 40.0% |
| !!! | ATGGCATCGATTACTTTTGG+AGG | - | chr3_2:18169207-18169226 | None:intergenic | 40.0% |
| GGTATCGCTGCATAAAAGAT+TGG | - | chr3_2:18169381-18169400 | None:intergenic | 40.0% | |
| TACATTGGTCCTAGTGAAAC+TGG | + | chr3_2:18168718-18168737 | Msa0397940:intron | 40.0% | |
| ATGGGGAAAAAATGGTTGAG+AGG | + | chr3_2:18168783-18168802 | Msa0397940:intron | 40.0% | |
| !! | CTGATGACTAGTCTCTGTTT+GGG | - | chr3_2:18168840-18168859 | None:intergenic | 40.0% |
| ! | AGACTAGTCATCAGCAAAGT+CGG | + | chr3_2:18168846-18168865 | Msa0397940:intron | 40.0% |
| GGTGGATCACACCAATAATT+TGG | + | chr3_2:18168867-18168886 | Msa0397940:intron | 40.0% | |
| GTTAAGCTTGACTATGGTCA+AGG | - | chr3_2:18168910-18168929 | None:intergenic | 40.0% | |
| TTTCTCGCAGTTAAAGCAAC+TGG | + | chr3_2:18169150-18169169 | Msa0397940:CDS | 40.0% | |
| !! | ATCGATTACTTTTGGAGGCT+CGG | - | chr3_2:18169202-18169221 | None:intergenic | 40.0% |
| !!! | ATGGCATCGATTACTTTTGG+AGG | - | chr3_2:18169207-18169226 | None:intergenic | 40.0% |
| GGTATCGCTGCATAAAAGAT+TGG | - | chr3_2:18169381-18169400 | None:intergenic | 40.0% | |
| ! | ATGGTGGGAAGAGTTGATTG+AGG | - | chr3_2:18168404-18168423 | None:intergenic | 45.0% |
| CAATCAACTCTTCCCACCAT+TGG | + | chr3_2:18168404-18168423 | Msa0397940:intron | 45.0% | |
| CGATTCAGTCATTCCAGCAA+CGG | - | chr3_2:18168432-18168451 | None:intergenic | 45.0% | |
| AGTTGGGAAGAATGCAGAGA+TGG | - | chr3_2:18168568-18168587 | None:intergenic | 45.0% | |
| CGCGTAGAAGATGGTAAGTT+GGG | - | chr3_2:18168584-18168603 | None:intergenic | 45.0% | |
| CCAACTTACCATCTTCTACG+CGG | + | chr3_2:18168582-18168601 | Msa0397940:CDS | 45.0% | |
| CAACTTACCATCTTCTACGC+GGG | + | chr3_2:18168583-18168602 | Msa0397940:CDS | 45.0% | |
| AGAGAGATACCTTGTCAGCA+GGG | - | chr3_2:18168633-18168652 | None:intergenic | 45.0% | |
| !!! | CCATTTTTTCCCCATCCACA+AGG | - | chr3_2:18168778-18168797 | None:intergenic | 45.0% |
| CCTTGTGGATGGGGAAAAAA+TGG | + | chr3_2:18168775-18168794 | Msa0397940:intron | 45.0% | |
| !! | GCTGATGACTAGTCTCTGTT+TGG | - | chr3_2:18168841-18168860 | None:intergenic | 45.0% |
| ACCATAGTCAAGCTTAACCG+TGG | + | chr3_2:18168912-18168931 | Msa0397940:intron | 45.0% | |
| ! | AACCGTGGCACTATTTCTTC+AGG | + | chr3_2:18168927-18168946 | Msa0397940:intron | 45.0% |
| TGCCTGAAGAAATAGTGCCA+CGG | - | chr3_2:18168932-18168951 | None:intergenic | 45.0% | |
| ! | AAGCTATCCTGTTGTTGGCT+AGG | + | chr3_2:18168953-18168972 | Msa0397940:intron | 45.0% |
| ! | ATCCTGTTGTTGGCTAGGAA+TGG | + | chr3_2:18168958-18168977 | Msa0397940:intron | 45.0% |
| CACAGCACACAGAAAAGTTC+AGG | + | chr3_2:18168999-18169018 | Msa0397940:intron | 45.0% | |
| AATCGATGCCATTACCATGC+TGG | + | chr3_2:18169215-18169234 | Msa0397940:CDS | 45.0% | |
| ! | CTTTTATGCAGCGATACCTC+AGG | + | chr3_2:18169383-18169402 | Msa0397940:intron | 45.0% |
| ! | ATGGTGGGAAGAGTTGATTG+AGG | - | chr3_2:18168404-18168423 | None:intergenic | 45.0% |
| CAATCAACTCTTCCCACCAT+TGG | + | chr3_2:18168404-18168423 | Msa0397940:intron | 45.0% | |
| CGATTCAGTCATTCCAGCAA+CGG | - | chr3_2:18168432-18168451 | None:intergenic | 45.0% | |
| AGTTGGGAAGAATGCAGAGA+TGG | - | chr3_2:18168568-18168587 | None:intergenic | 45.0% | |
| CGCGTAGAAGATGGTAAGTT+GGG | - | chr3_2:18168584-18168603 | None:intergenic | 45.0% | |
| CCAACTTACCATCTTCTACG+CGG | + | chr3_2:18168582-18168601 | Msa0397940:CDS | 45.0% | |
| CAACTTACCATCTTCTACGC+GGG | + | chr3_2:18168583-18168602 | Msa0397940:CDS | 45.0% | |
| AGAGAGATACCTTGTCAGCA+GGG | - | chr3_2:18168633-18168652 | None:intergenic | 45.0% | |
| !!! | CCATTTTTTCCCCATCCACA+AGG | - | chr3_2:18168778-18168797 | None:intergenic | 45.0% |
| CCTTGTGGATGGGGAAAAAA+TGG | + | chr3_2:18168775-18168794 | Msa0397940:intron | 45.0% | |
| !! | GCTGATGACTAGTCTCTGTT+TGG | - | chr3_2:18168841-18168860 | None:intergenic | 45.0% |
| ACCATAGTCAAGCTTAACCG+TGG | + | chr3_2:18168912-18168931 | Msa0397940:intron | 45.0% | |
| ! | AACCGTGGCACTATTTCTTC+AGG | + | chr3_2:18168927-18168946 | Msa0397940:intron | 45.0% |
| TGCCTGAAGAAATAGTGCCA+CGG | - | chr3_2:18168932-18168951 | None:intergenic | 45.0% | |
| ! | AAGCTATCCTGTTGTTGGCT+AGG | + | chr3_2:18168953-18168972 | Msa0397940:intron | 45.0% |
| ! | ATCCTGTTGTTGGCTAGGAA+TGG | + | chr3_2:18168958-18168977 | Msa0397940:intron | 45.0% |
| CACAGCACACAGAAAAGTTC+AGG | + | chr3_2:18168999-18169018 | Msa0397940:intron | 45.0% | |
| AATCGATGCCATTACCATGC+TGG | + | chr3_2:18169215-18169234 | Msa0397940:CDS | 45.0% | |
| ! | CTTTTATGCAGCGATACCTC+AGG | + | chr3_2:18169383-18169402 | Msa0397940:intron | 45.0% |
| CCGCGTAGAAGATGGTAAGT+TGG | - | chr3_2:18168585-18168604 | None:intergenic | 50.0% | |
| CAATGACATCCCTGCTGACA+AGG | + | chr3_2:18168621-18168640 | Msa0397940:CDS | 50.0% | |
| CAGAGAGATACCTTGTCAGC+AGG | - | chr3_2:18168634-18168653 | None:intergenic | 50.0% | |
| GGTCCTAGTGAAACTGGACT+CGG | + | chr3_2:18168724-18168743 | Msa0397940:intron | 50.0% | |
| GTCCTAGTGAAACTGGACTC+GGG | + | chr3_2:18168725-18168744 | Msa0397940:intron | 50.0% | |
| GAATCCGAGACCTGGCATAA+GGG | - | chr3_2:18168752-18168771 | None:intergenic | 50.0% | |
| CTAGTCTCTGTTTGGGAGCA+TGG | - | chr3_2:18168833-18168852 | None:intergenic | 50.0% | |
| CTAGTCATCAGCAAAGTCGG+TGG | + | chr3_2:18168849-18168868 | Msa0397940:intron | 50.0% | |
| GCCACGGTTAAGCTTGACTA+TGG | - | chr3_2:18168916-18168935 | None:intergenic | 50.0% | |
| GGCACAAGCTATCCTGTTGT+TGG | + | chr3_2:18168948-18168967 | Msa0397940:intron | 50.0% | |
| CACAGAAAAGTTCAGGCACC+TGG | + | chr3_2:18169006-18169025 | Msa0397940:intron | 50.0% | |
| AAAGTTCAGGCACCTGGTGA+CGG | + | chr3_2:18169012-18169031 | Msa0397940:intron | 50.0% | |
| TACAGGACTTGGATGACCAG+AGG | - | chr3_2:18169073-18169092 | None:intergenic | 50.0% | |
| TCGAATACTGGTGCACAGTC+AGG | + | chr3_2:18169102-18169121 | Msa0397940:CDS | 50.0% | |
| GCATTGCTAACAGGAGTGGT+GGG | - | chr3_2:18169180-18169199 | None:intergenic | 50.0% | |
| ACCTGACACCAGCATGGTAA+TGG | - | chr3_2:18169226-18169245 | None:intergenic | 50.0% | |
| CAACATACCTGACACCAGCA+TGG | - | chr3_2:18169232-18169251 | None:intergenic | 50.0% | |
| ! | CATGCTGGTGTCAGGTATGT+TGG | + | chr3_2:18169230-18169249 | Msa0397940:intron | 50.0% |
| CCGCGTAGAAGATGGTAAGT+TGG | - | chr3_2:18168585-18168604 | None:intergenic | 50.0% | |
| CAATGACATCCCTGCTGACA+AGG | + | chr3_2:18168621-18168640 | Msa0397940:CDS | 50.0% | |
| CAGAGAGATACCTTGTCAGC+AGG | - | chr3_2:18168634-18168653 | None:intergenic | 50.0% | |
| GGTCCTAGTGAAACTGGACT+CGG | + | chr3_2:18168724-18168743 | Msa0397940:intron | 50.0% | |
| GTCCTAGTGAAACTGGACTC+GGG | + | chr3_2:18168725-18168744 | Msa0397940:intron | 50.0% | |
| GAATCCGAGACCTGGCATAA+GGG | - | chr3_2:18168752-18168771 | None:intergenic | 50.0% | |
| CTAGTCTCTGTTTGGGAGCA+TGG | - | chr3_2:18168833-18168852 | None:intergenic | 50.0% | |
| CTAGTCATCAGCAAAGTCGG+TGG | + | chr3_2:18168849-18168868 | Msa0397940:intron | 50.0% | |
| GCCACGGTTAAGCTTGACTA+TGG | - | chr3_2:18168916-18168935 | None:intergenic | 50.0% | |
| GGCACAAGCTATCCTGTTGT+TGG | + | chr3_2:18168948-18168967 | Msa0397940:intron | 50.0% | |
| CACAGAAAAGTTCAGGCACC+TGG | + | chr3_2:18169006-18169025 | Msa0397940:intron | 50.0% | |
| AAAGTTCAGGCACCTGGTGA+CGG | + | chr3_2:18169012-18169031 | Msa0397940:intron | 50.0% | |
| TACAGGACTTGGATGACCAG+AGG | - | chr3_2:18169073-18169092 | None:intergenic | 50.0% | |
| TCGAATACTGGTGCACAGTC+AGG | + | chr3_2:18169102-18169121 | Msa0397940:CDS | 50.0% | |
| GCATTGCTAACAGGAGTGGT+GGG | - | chr3_2:18169180-18169199 | None:intergenic | 50.0% | |
| ACCTGACACCAGCATGGTAA+TGG | - | chr3_2:18169226-18169245 | None:intergenic | 50.0% | |
| CAACATACCTGACACCAGCA+TGG | - | chr3_2:18169232-18169251 | None:intergenic | 50.0% | |
| ! | CATGCTGGTGTCAGGTATGT+TGG | + | chr3_2:18169230-18169249 | Msa0397940:intron | 50.0% |
| CATTCCAGCAACGGCACCAA+TGG | - | chr3_2:18168423-18168442 | None:intergenic | 55.0% | |
| GACAGTACCCGCGTAGAAGA+TGG | - | chr3_2:18168593-18168612 | None:intergenic | 55.0% | |
| GACCCGAGTCCAGTTTCACT+AGG | - | chr3_2:18168730-18168749 | None:intergenic | 55.0% | |
| CGAATCCGAGACCTGGCATA+AGG | - | chr3_2:18168753-18168772 | None:intergenic | 55.0% | |
| ! | TCGGATTCGAGCCTTGTGGA+TGG | + | chr3_2:18168764-18168783 | Msa0397940:intron | 55.0% |
| ! | CGGATTCGAGCCTTGTGGAT+GGG | + | chr3_2:18168765-18168784 | Msa0397940:intron | 55.0% |
| ! | GGATTCGAGCCTTGTGGATG+GGG | + | chr3_2:18168766-18168785 | Msa0397940:intron | 55.0% |
| GAGAGGATAGACCCCACTGA+AGG | + | chr3_2:18168800-18168819 | Msa0397940:intron | 55.0% | |
| AGGATAGACCCCACTGAAGG+TGG | + | chr3_2:18168803-18168822 | Msa0397940:intron | 55.0% | |
| ATGGCTGACCACCTTCAGTG+GGG | - | chr3_2:18168814-18168833 | None:intergenic | 55.0% | |
| CATGGCTGACCACCTTCAGT+GGG | - | chr3_2:18168815-18168834 | None:intergenic | 55.0% | |
| CGCCATTCCTAGCCAACAAC+AGG | - | chr3_2:18168963-18168982 | None:intergenic | 55.0% | |
| GGCTAGGAATGGCGTATCAG+TGG | + | chr3_2:18168969-18168988 | Msa0397940:intron | 55.0% | |
| GAGGAGGGTGGTGCATTTGA+AGG | - | chr3_2:18169054-18169073 | None:intergenic | 55.0% | |
| TCAAATGCACCACCCTCCTC+TGG | + | chr3_2:18169054-18169073 | Msa0397940:CDS | 55.0% | |
| GGACTTGGATGACCAGAGGA+GGG | - | chr3_2:18169069-18169088 | None:intergenic | 55.0% | |
| AGGACTTGGATGACCAGAGG+AGG | - | chr3_2:18169070-18169089 | None:intergenic | 55.0% | |
| GGCATTGCTAACAGGAGTGG+TGG | - | chr3_2:18169181-18169200 | None:intergenic | 55.0% | |
| CTCGGCATTGCTAACAGGAG+TGG | - | chr3_2:18169184-18169203 | None:intergenic | 55.0% | |
| GCCATTACCATGCTGGTGTC+AGG | + | chr3_2:18169222-18169241 | Msa0397940:CDS | 55.0% | |
| ATGCAGCGATACCTCAGGCT+CGG | + | chr3_2:18169388-18169407 | Msa0397940:intron | 55.0% | |
| AAGGATGCTTTCCGAGCCTG+AGG | - | chr3_2:18169402-18169421 | None:intergenic | 55.0% | |
| !! | TCAGGCTCGGAAAGCATCCT+TGG | + | chr3_2:18169401-18169420 | Msa0397940:CDS | 55.0% |
| CATTCCAGCAACGGCACCAA+TGG | - | chr3_2:18168423-18168442 | None:intergenic | 55.0% | |
| GACAGTACCCGCGTAGAAGA+TGG | - | chr3_2:18168593-18168612 | None:intergenic | 55.0% | |
| GACCCGAGTCCAGTTTCACT+AGG | - | chr3_2:18168730-18168749 | None:intergenic | 55.0% | |
| CGAATCCGAGACCTGGCATA+AGG | - | chr3_2:18168753-18168772 | None:intergenic | 55.0% | |
| ! | TCGGATTCGAGCCTTGTGGA+TGG | + | chr3_2:18168764-18168783 | Msa0397940:intron | 55.0% |
| ! | CGGATTCGAGCCTTGTGGAT+GGG | + | chr3_2:18168765-18168784 | Msa0397940:intron | 55.0% |
| ! | GGATTCGAGCCTTGTGGATG+GGG | + | chr3_2:18168766-18168785 | Msa0397940:intron | 55.0% |
| GAGAGGATAGACCCCACTGA+AGG | + | chr3_2:18168800-18168819 | Msa0397940:intron | 55.0% | |
| AGGATAGACCCCACTGAAGG+TGG | + | chr3_2:18168803-18168822 | Msa0397940:intron | 55.0% | |
| ATGGCTGACCACCTTCAGTG+GGG | - | chr3_2:18168814-18168833 | None:intergenic | 55.0% | |
| CATGGCTGACCACCTTCAGT+GGG | - | chr3_2:18168815-18168834 | None:intergenic | 55.0% | |
| CGCCATTCCTAGCCAACAAC+AGG | - | chr3_2:18168963-18168982 | None:intergenic | 55.0% | |
| GGCTAGGAATGGCGTATCAG+TGG | + | chr3_2:18168969-18168988 | Msa0397940:intron | 55.0% | |
| GAGGAGGGTGGTGCATTTGA+AGG | - | chr3_2:18169054-18169073 | None:intergenic | 55.0% | |
| TCAAATGCACCACCCTCCTC+TGG | + | chr3_2:18169054-18169073 | Msa0397940:CDS | 55.0% | |
| GGACTTGGATGACCAGAGGA+GGG | - | chr3_2:18169069-18169088 | None:intergenic | 55.0% | |
| AGGACTTGGATGACCAGAGG+AGG | - | chr3_2:18169070-18169089 | None:intergenic | 55.0% | |
| GGCATTGCTAACAGGAGTGG+TGG | - | chr3_2:18169181-18169200 | None:intergenic | 55.0% | |
| CTCGGCATTGCTAACAGGAG+TGG | - | chr3_2:18169184-18169203 | None:intergenic | 55.0% | |
| GCCATTACCATGCTGGTGTC+AGG | + | chr3_2:18169222-18169241 | Msa0397940:CDS | 55.0% | |
| ATGCAGCGATACCTCAGGCT+CGG | + | chr3_2:18169388-18169407 | Msa0397940:intron | 55.0% | |
| AAGGATGCTTTCCGAGCCTG+AGG | - | chr3_2:18169402-18169421 | None:intergenic | 55.0% | |
| !! | TCAGGCTCGGAAAGCATCCT+TGG | + | chr3_2:18169401-18169420 | Msa0397940:CDS | 55.0% |
| CCAGCAACGGCACCAATGGT+GGG | - | chr3_2:18168419-18168438 | None:intergenic | 60.0% | |
| TCCAGCAACGGCACCAATGG+TGG | - | chr3_2:18168420-18168439 | None:intergenic | 60.0% | |
| GGGTCCCTTATGCCAGGTCT+CGG | + | chr3_2:18168745-18168764 | Msa0397940:intron | 60.0% | |
| CAAGGCTCGAATCCGAGACC+TGG | - | chr3_2:18168760-18168779 | None:intergenic | 60.0% | |
| GGTCTCGGATTCGAGCCTTG+TGG | + | chr3_2:18168760-18168779 | Msa0397940:intron | 60.0% | |
| GCATGGCTGACCACCTTCAG+TGG | - | chr3_2:18168816-18168835 | None:intergenic | 60.0% | |
| CTTGGATGACCAGAGGAGGG+TGG | - | chr3_2:18169066-18169085 | None:intergenic | 60.0% | |
| ACTGGTGCACAGTCAGGCAG+TGG | + | chr3_2:18169108-18169127 | Msa0397940:CDS | 60.0% | |
| GGAGGCTCGGCATTGCTAAC+AGG | - | chr3_2:18169189-18169208 | None:intergenic | 60.0% | |
| CCAGCAACGGCACCAATGGT+GGG | - | chr3_2:18168419-18168438 | None:intergenic | 60.0% | |
| TCCAGCAACGGCACCAATGG+TGG | - | chr3_2:18168420-18168439 | None:intergenic | 60.0% | |
| GGGTCCCTTATGCCAGGTCT+CGG | + | chr3_2:18168745-18168764 | Msa0397940:intron | 60.0% | |
| CAAGGCTCGAATCCGAGACC+TGG | - | chr3_2:18168760-18168779 | None:intergenic | 60.0% | |
| GGTCTCGGATTCGAGCCTTG+TGG | + | chr3_2:18168760-18168779 | Msa0397940:intron | 60.0% | |
| GCATGGCTGACCACCTTCAG+TGG | - | chr3_2:18168816-18168835 | None:intergenic | 60.0% | |
| CTTGGATGACCAGAGGAGGG+TGG | - | chr3_2:18169066-18169085 | None:intergenic | 60.0% | |
| ACTGGTGCACAGTCAGGCAG+TGG | + | chr3_2:18169108-18169127 | Msa0397940:CDS | 60.0% | |
| GGAGGCTCGGCATTGCTAAC+AGG | - | chr3_2:18169189-18169208 | None:intergenic | 60.0% | |
| !! | CCCACCATTGGTGCCGTTGC+TGG | + | chr3_2:18168416-18168435 | Msa0397940:intron | 65.0% |
| GGACTCGGGTCCCTTATGCC+AGG | + | chr3_2:18168739-18168758 | Msa0397940:intron | 65.0% | |
| CTCACGAGCACACCGTCACC+AGG | - | chr3_2:18169027-18169046 | None:intergenic | 65.0% | |
| !! | CCCACCATTGGTGCCGTTGC+TGG | + | chr3_2:18168416-18168435 | Msa0397940:intron | 65.0% |
| GGACTCGGGTCCCTTATGCC+AGG | + | chr3_2:18168739-18168758 | Msa0397940:intron | 65.0% | |
| CTCACGAGCACACCGTCACC+AGG | - | chr3_2:18169027-18169046 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 18168375 | 18169470 | 18168375 | ID=Msa0397940;Name=Msa0397940 |
| chr3_2 | mRNA | 18168375 | 18169470 | 18168375 | ID=Msa0397940-mRNA-1;Parent=Msa0397940;Name=Msa0397940-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.6|1|1|5|0|133 |
| chr3_2 | exon | 18168375 | 18168381 | 18168375 | ID=Msa0397940-mRNA-1:exon:4072;Parent=Msa0397940-mRNA-1 |
| chr3_2 | exon | 18168492 | 18168498 | 18168492 | ID=Msa0397940-mRNA-1:exon:4073;Parent=Msa0397940-mRNA-1 |
| chr3_2 | exon | 18168555 | 18168642 | 18168555 | ID=Msa0397940-mRNA-1:exon:4074;Parent=Msa0397940-mRNA-1 |
| chr3_2 | exon | 18169021 | 18169243 | 18169021 | ID=Msa0397940-mRNA-1:exon:4075;Parent=Msa0397940-mRNA-1 |
| chr3_2 | exon | 18169394 | 18169470 | 18169394 | ID=Msa0397940-mRNA-1:exon:4076;Parent=Msa0397940-mRNA-1 |
| chr3_2 | CDS | 18168375 | 18168381 | 18168375 | ID=Msa0397940-mRNA-1:cds;Parent=Msa0397940-mRNA-1 |
| chr3_2 | CDS | 18168492 | 18168498 | 18168492 | ID=Msa0397940-mRNA-1:cds;Parent=Msa0397940-mRNA-1 |
| chr3_2 | CDS | 18168555 | 18168642 | 18168555 | ID=Msa0397940-mRNA-1:cds;Parent=Msa0397940-mRNA-1 |
| chr3_2 | CDS | 18169021 | 18169243 | 18169021 | ID=Msa0397940-mRNA-1:cds;Parent=Msa0397940-mRNA-1 |
| chr3_2 | CDS | 18169394 | 18169470 | 18169394 | ID=Msa0397940-mRNA-1:cds;Parent=Msa0397940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
