Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398220 | XP_013459055.1 | 93.668 | 379 | 19 | 2 | 11 | 385 | 16 | 393 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398220 | sp|Q8AVN9|ZN346_XENLA | 23.954 | 263 | 143 | 7 | 111 | 373 | 219 | 424 | 2.64e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398220 | A0A072UVJ5 | 93.668 | 379 | 19 | 2 | 11 | 385 | 16 | 393 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0398220 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398220 | MtrunA17_Chr3g0086321 | 93.668 | 379 | 19 | 2 | 11 | 385 | 16 | 393 | 0.0 | 709 |
| Msa0398220 | MtrunA17_Chr5g0447971 | 69.869 | 229 | 69 | 0 | 157 | 385 | 304 | 532 | 1.41e-102 | 313 |
| Msa0398220 | MtrunA17_Chr5g0447971 | 68.966 | 145 | 36 | 1 | 47 | 191 | 53 | 188 | 1.65e-54 | 188 |
| Msa0398220 | MtrunA17_Chr5g0447971 | 31.250 | 128 | 68 | 3 | 114 | 221 | 397 | 524 | 7.78e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398220 | AT5G61190.1 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 3.29e-21 | 96.3 |
| Msa0398220 | AT5G61190.1 | 25.614 | 285 | 152 | 11 | 120 | 375 | 242 | 495 | 1.58e-13 | 72.8 |
| Msa0398220 | AT5G61190.1 | 24.537 | 216 | 113 | 6 | 113 | 285 | 289 | 497 | 6.02e-13 | 70.9 |
| Msa0398220 | AT5G61190.10 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 3.37e-21 | 96.3 |
| Msa0398220 | AT5G61190.10 | 24.476 | 286 | 162 | 10 | 120 | 375 | 242 | 503 | 1.68e-12 | 69.7 |
| Msa0398220 | AT5G61190.10 | 23.661 | 224 | 113 | 6 | 113 | 285 | 289 | 505 | 7.11e-12 | 67.8 |
| Msa0398220 | AT5G61190.7 | 29.897 | 194 | 105 | 4 | 190 | 383 | 146 | 308 | 3.46e-21 | 96.3 |
| Msa0398220 | AT5G61190.7 | 24.476 | 286 | 162 | 10 | 120 | 375 | 148 | 409 | 1.70e-12 | 69.7 |
| Msa0398220 | AT5G61190.7 | 23.661 | 224 | 113 | 6 | 113 | 285 | 195 | 411 | 7.72e-12 | 67.4 |
| Msa0398220 | AT5G61190.3 | 29.897 | 194 | 105 | 4 | 190 | 383 | 146 | 308 | 3.46e-21 | 96.3 |
| Msa0398220 | AT5G61190.3 | 24.476 | 286 | 162 | 10 | 120 | 375 | 148 | 409 | 1.70e-12 | 69.7 |
| Msa0398220 | AT5G61190.3 | 23.661 | 224 | 113 | 6 | 113 | 285 | 195 | 411 | 7.72e-12 | 67.4 |
| Msa0398220 | AT5G61190.11 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 4.00e-21 | 95.9 |
| Msa0398220 | AT5G61190.11 | 24.476 | 286 | 162 | 10 | 120 | 375 | 242 | 503 | 1.57e-12 | 69.7 |
| Msa0398220 | AT5G61190.11 | 23.661 | 224 | 113 | 6 | 113 | 285 | 289 | 505 | 7.50e-12 | 67.8 |
| Msa0398220 | AT5G61190.9 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 4.24e-21 | 95.9 |
| Msa0398220 | AT5G61190.9 | 24.296 | 284 | 165 | 9 | 120 | 375 | 242 | 503 | 1.58e-12 | 69.7 |
| Msa0398220 | AT5G61190.9 | 23.661 | 224 | 113 | 6 | 113 | 285 | 289 | 505 | 7.63e-12 | 67.8 |
| Msa0398220 | AT5G61190.5 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 4.77e-21 | 95.9 |
| Msa0398220 | AT5G61190.5 | 24.296 | 284 | 165 | 9 | 120 | 375 | 242 | 503 | 1.85e-12 | 69.7 |
| Msa0398220 | AT5G61190.5 | 23.661 | 224 | 113 | 6 | 113 | 285 | 289 | 505 | 8.16e-12 | 67.4 |
| Msa0398220 | AT5G61190.6 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 5.03e-21 | 95.9 |
| Msa0398220 | AT5G61190.6 | 24.296 | 284 | 165 | 9 | 120 | 375 | 242 | 503 | 2.09e-12 | 69.3 |
| Msa0398220 | AT5G61190.6 | 23.661 | 224 | 113 | 6 | 113 | 285 | 289 | 505 | 8.30e-12 | 67.4 |
| Msa0398220 | AT5G61190.8 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 6.04e-21 | 95.5 |
| Msa0398220 | AT5G61190.8 | 24.296 | 284 | 165 | 9 | 120 | 375 | 242 | 503 | 1.29e-12 | 70.1 |
| Msa0398220 | AT5G61190.8 | 23.661 | 224 | 113 | 6 | 113 | 285 | 289 | 505 | 7.39e-12 | 67.4 |
| Msa0398220 | AT5G61190.4 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 7.00e-21 | 95.1 |
| Msa0398220 | AT5G61190.4 | 24.296 | 284 | 165 | 9 | 120 | 375 | 242 | 503 | 1.44e-12 | 69.7 |
| Msa0398220 | AT5G61190.4 | 23.982 | 221 | 116 | 6 | 113 | 285 | 289 | 505 | 8.64e-12 | 67.4 |
| Msa0398220 | AT5G61190.2 | 29.897 | 194 | 105 | 4 | 190 | 383 | 240 | 402 | 7.00e-21 | 95.1 |
| Msa0398220 | AT5G61190.2 | 24.296 | 284 | 165 | 9 | 120 | 375 | 242 | 503 | 1.44e-12 | 69.7 |
| Msa0398220 | AT5G61190.2 | 23.982 | 221 | 116 | 6 | 113 | 285 | 289 | 505 | 8.64e-12 | 67.4 |
Find 105 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGCCTTCTTTGGTTT+TGG | 0.255884 | 3_2:-18893342 | None:intergenic |
| ACATGGCCACCACAAATTTA+TGG | 0.268191 | 3_2:+18890635 | Msa0398220:CDS |
| ACTTATTACTGTTTGTGTTT+TGG | 0.270098 | 3_2:+18893691 | Msa0398220:three_prime_UTR |
| ACCGCAACAAATACTTTAAT+CGG | 0.278525 | 3_2:+18893291 | Msa0398220:CDS |
| TCAAGTTCTGATGCCTTCTT+TGG | 0.279559 | 3_2:-18893348 | None:intergenic |
| GTTCCTGTAACACAAGTAAA+AGG | 0.331034 | 3_2:-18893670 | None:intergenic |
| GCAGAATCAACCTGTTTCTT+AGG | 0.337690 | 3_2:-18890899 | None:intergenic |
| TGGGAGGTGTAAAGAGAAAC+AGG | 0.338861 | 3_2:-18888956 | None:intergenic |
| CACGCAGAAGTTAAACTTGC+AGG | 0.343125 | 3_2:-18890605 | None:intergenic |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.356623 | 3_2:-18893211 | None:intergenic |
| CGCTTGAATTCGGCAATAGA+TGG | 0.359328 | 3_2:-18893072 | None:intergenic |
| ACAAATTGGGTAAGAATTCA+TGG | 0.359847 | 3_2:-18888652 | None:intergenic |
| TTTAATTGCTAAGTGGTAGA+TGG | 0.360146 | 3_2:+18893764 | Msa0398220:three_prime_UTR |
| TTGTTGTTGAGGGTACATTT+TGG | 0.361006 | 3_2:-18888807 | None:intergenic |
| AACACCGTTACGCTTGAATT+CGG | 0.361255 | 3_2:-18893082 | None:intergenic |
| AAGCTTTGGTGACTTTGGTT+TGG | 0.371601 | 3_2:-18890685 | None:intergenic |
| ATGCAGTTTGTCATTGCTAA+TGG | 0.394861 | 3_2:+18893611 | Msa0398220:three_prime_UTR |
| AACCAACAGATTATCACAAT+TGG | 0.400223 | 3_2:+18888978 | Msa0398220:CDS |
| GGAGGATGAAGTGAAGGATC+AGG | 0.403946 | 3_2:-18888893 | None:intergenic |
| GCAATCCGAGCCTAAGAAAC+AGG | 0.404268 | 3_2:+18890889 | Msa0398220:CDS |
| TCTCAAAGCTTTGGTGACTT+TGG | 0.404347 | 3_2:-18890690 | None:intergenic |
| ATACAAGTACAAGCGTTAAT+TGG | 0.406416 | 3_2:+18890854 | Msa0398220:CDS |
| GGCTCGGATTGCTTGACAAC+AGG | 0.407539 | 3_2:-18890878 | None:intergenic |
| TAAAGTATTTGTTGCGGTGG+CGG | 0.415658 | 3_2:-18893286 | None:intergenic |
| CACTTCACATCTCAAAGCTT+TGG | 0.420423 | 3_2:-18890699 | None:intergenic |
| ATCAGGGAATGATGAATAGT+AGG | 0.420683 | 3_2:-18888876 | None:intergenic |
| GAAGGAGGAGCTGCAGTTGA+TGG | 0.421675 | 3_2:+18893399 | Msa0398220:CDS |
| TGTAAACTTGTGAATCAAAA+GGG | 0.422622 | 3_2:-18888731 | None:intergenic |
| TTGTTGTTGCTGGAAATTGT+AGG | 0.427790 | 3_2:-18888843 | None:intergenic |
| GCAAGATTAATTGTAACAGC+AGG | 0.443520 | 3_2:+18893166 | Msa0398220:CDS |
| AAGAAACGTAAAGTTGTAGA+AGG | 0.448799 | 3_2:+18893381 | Msa0398220:CDS |
| GTTGCCTTGATGTCTAATAA+TGG | 0.452518 | 3_2:+18893042 | Msa0398220:CDS |
| GTGTAAACTTGTGAATCAAA+AGG | 0.458504 | 3_2:-18888732 | None:intergenic |
| TCTCATCTAGACTTGAAGAC+AGG | 0.469108 | 3_2:+18893577 | Msa0398220:three_prime_UTR |
| AGCTGATCGGTCACTGGTTG+AGG | 0.470018 | 3_2:+18893539 | Msa0398220:exon |
| ATCAACCTGTTTCTTAGGCT+CGG | 0.472485 | 3_2:-18890894 | None:intergenic |
| TGGGAGAAAGCACGCTGCTC+AGG | 0.472952 | 3_2:+18890985 | Msa0398220:CDS |
| GGTGAAAATTGAAAACTGTC+TGG | 0.474169 | 3_2:-18893461 | None:intergenic |
| CTTCTAATATTGCAGGCTGT+TGG | 0.480500 | 3_2:+18890557 | Msa0398220:intron |
| GTCTCATTGCCATAAATTTG+TGG | 0.482416 | 3_2:-18890644 | None:intergenic |
| TCAGGGAATGATGAATAGTA+GGG | 0.483312 | 3_2:-18888875 | None:intergenic |
| GAGCTTGGTATTGTTGTTGA+GGG | 0.489208 | 3_2:-18888817 | None:intergenic |
| AGTATTTGTTGCGGTGGCGG+TGG | 0.490137 | 3_2:-18893283 | None:intergenic |
| AAGAAGGCAGGGTCGGTCAC+TGG | 0.492350 | 3_2:+18893513 | Msa0398220:CDS |
| TGTTGCGGTGGCGGTGGAAG+TGG | 0.494772 | 3_2:-18893277 | None:intergenic |
| TTTGCAAGTGGGTCAGTGCC+AGG | 0.495030 | 3_2:-18888914 | None:intergenic |
| TGAGCTTGGTATTGTTGTTG+AGG | 0.503622 | 3_2:-18888818 | None:intergenic |
| TTGGTGACTTTGGTTTGGTT+AGG | 0.506602 | 3_2:-18890680 | None:intergenic |
| TGGTTGAGCTGATCGGTCAC+TGG | 0.510188 | 3_2:+18893533 | Msa0398220:exon |
| CATATATCAAACATGTTGGT+GGG | 0.515411 | 3_2:+18890966 | Msa0398220:CDS |
| TATCTGATGGGTTCAGATTG+AGG | 0.517150 | 3_2:-18889007 | None:intergenic |
| TGTTGTTGCTGGAAATTGTA+GGG | 0.518373 | 3_2:-18888842 | None:intergenic |
| TTGCAAACCTCAATGCATCA+TGG | 0.519312 | 3_2:-18893735 | None:intergenic |
| TCTTATGAAAGTCACATAGC+TGG | 0.520481 | 3_2:+18890749 | Msa0398220:CDS |
| GAATTCAAGCGTAACGGTGT+TGG | 0.521387 | 3_2:+18893084 | Msa0398220:CDS |
| GATCCTTCACTTCATCCTCC+TGG | 0.522615 | 3_2:+18888896 | Msa0398220:CDS |
| ACATGCTGCTATGGTGAAGA+AGG | 0.523999 | 3_2:+18893497 | Msa0398220:CDS |
| AATTGTGATAATCTGTTGGT+TGG | 0.524110 | 3_2:-18888976 | None:intergenic |
| TTCGCATGAGATGCAATAGT+AGG | 0.525742 | 3_2:-18890809 | None:intergenic |
| CGATCAACCAAAACCAAAGA+AGG | 0.528394 | 3_2:+18893335 | Msa0398220:CDS |
| CGGTCACTGGTTGAGCTGAT+CGG | 0.528905 | 3_2:+18893526 | Msa0398220:exon |
| CTCATCTAGACTTGAAGACA+GGG | 0.533305 | 3_2:+18893578 | Msa0398220:three_prime_UTR |
| CAAATTGGGTAAGAATTCAT+GGG | 0.534818 | 3_2:-18888651 | None:intergenic |
| CTTCTGCGTGGAATGGTACA+TGG | 0.537293 | 3_2:+18890618 | Msa0398220:CDS |
| AATGCCATTATTAGACATCA+AGG | 0.537375 | 3_2:-18893046 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 3_2:+18893501 | Msa0398220:CDS |
| ATTGTGATAATCTGTTGGTT+GGG | 0.539629 | 3_2:-18888975 | None:intergenic |
| CCGCAACAAATACTTTAATC+GGG | 0.541756 | 3_2:+18893292 | Msa0398220:CDS |
| ACTTACAAGATCATATCTGA+TGG | 0.547707 | 3_2:-18889020 | None:intergenic |
| TAAGAAACACTTGAAGAACT+TGG | 0.549430 | 3_2:+18893215 | Msa0398220:CDS |
| AGTTTAACTTCTGCGTGGAA+TGG | 0.550117 | 3_2:+18890611 | Msa0398220:CDS |
| CAAGATTAATTGTAACAGCA+GGG | 0.550872 | 3_2:+18893167 | Msa0398220:CDS |
| AAAAGCTGCCAAGAAAATCA+AGG | 0.552640 | 3_2:+18893116 | Msa0398220:CDS |
| GTAAACTTGTGAATCAAAAG+GGG | 0.555334 | 3_2:-18888730 | None:intergenic |
| AAATGAGTTTAATTGCTAAG+TGG | 0.555864 | 3_2:+18893757 | Msa0398220:three_prime_UTR |
| CCCGATTAAAGTATTTGTTG+CGG | 0.558626 | 3_2:-18893292 | None:intergenic |
| GTGATAATCTGTTGGTTGGG+AGG | 0.571099 | 3_2:-18888972 | None:intergenic |
| ATATACATTACACACTTAGC+CGG | 0.575976 | 3_2:+18893192 | Msa0398220:CDS |
| ATAACTTCCATGATGCATTG+AGG | 0.576340 | 3_2:+18893728 | Msa0398220:three_prime_UTR |
| GAAACAGGTTGATTCTGCAA+CGG | 0.579888 | 3_2:+18890904 | Msa0398220:CDS |
| GATGCATATATCAAACATGT+TGG | 0.581262 | 3_2:+18890962 | Msa0398220:CDS |
| GCATATATCAAACATGTTGG+TGG | 0.581785 | 3_2:+18890965 | Msa0398220:CDS |
| TTGATGTCTAATAATGGCAT+TGG | 0.582144 | 3_2:+18893048 | Msa0398220:CDS |
| ATCCAATTGTGATAATCTGT+TGG | 0.584557 | 3_2:-18888980 | None:intergenic |
| TCAAGGTTGCTCAGTCTGCA+TGG | 0.588753 | 3_2:+18893133 | Msa0398220:CDS |
| GATTAAAGTATTTGTTGCGG+TGG | 0.590642 | 3_2:-18893289 | None:intergenic |
| GGAAATTGTAGGGTTGAGCT+TGG | 0.593362 | 3_2:-18888832 | None:intergenic |
| GTGCCAGGAGGATGAAGTGA+AGG | 0.595047 | 3_2:-18888899 | None:intergenic |
| TGGTCAGAAACATGCTGCTA+TGG | 0.598112 | 3_2:+18893488 | Msa0398220:CDS |
| ATCGGGCCACAAGAAAAGCC+AGG | 0.598973 | 3_2:+18893309 | Msa0398220:CDS |
| GAGGATGAAGTGAAGGATCA+GGG | 0.602017 | 3_2:-18888892 | None:intergenic |
| AAACGTAAAGTTGTAGAAGG+AGG | 0.609951 | 3_2:+18893384 | Msa0398220:CDS |
| CTTACAAGATCATATCTGAT+GGG | 0.617080 | 3_2:-18889019 | None:intergenic |
| AAAGATGTTGAATTTGCAAG+TGG | 0.619628 | 3_2:-18888926 | None:intergenic |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.624906 | 3_2:+18893502 | Msa0398220:CDS |
| CAGCATGTTTCTGACCAACA+AGG | 0.643975 | 3_2:-18893482 | None:intergenic |
| TATGGTGAAGAAGGCAGGGT+CGG | 0.644498 | 3_2:+18893506 | Msa0398220:CDS |
| TCATTGCCATAAATTTGTGG+TGG | 0.646282 | 3_2:-18890641 | None:intergenic |
| AAGATGTTGAATTTGCAAGT+GGG | 0.649561 | 3_2:-18888925 | None:intergenic |
| CTGCAAGTTTAACTTCTGCG+TGG | 0.655140 | 3_2:+18890606 | Msa0398220:CDS |
| ATTGCCGAATTCAAGCGTAA+CGG | 0.711887 | 3_2:+18893078 | Msa0398220:CDS |
| GCAAGTGGGTCAGTGCCAGG+AGG | 0.726366 | 3_2:-18888911 | None:intergenic |
| TAAACTTGTGAATCAAAAGG+GGG | 0.729401 | 3_2:-18888729 | None:intergenic |
| AATGTGCACATTATGCAATG+TGG | 0.739375 | 3_2:+18893428 | Msa0398220:CDS |
| GAGGTGTAAAGAGAAACAGG+AGG | 0.817855 | 3_2:-18888953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACAATTTTTAAAAATG+TGG | + | chr3_2:18890317-18890336 | Msa0398220:intron | 10.0% |
| !! | AGAAAAAAAATCAACAAATT+GGG | - | chr3_2:18888668-18888687 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAATCAACAAAT+TGG | - | chr3_2:18888669-18888688 | None:intergenic | 15.0% |
| !!! | ATAATTAGGGTTTTTAAAAT+GGG | + | chr3_2:18889669-18889688 | Msa0398220:intron | 15.0% |
| !! | TAATACAAATAATTGTCAAA+TGG | + | chr3_2:18889885-18889904 | Msa0398220:intron | 15.0% |
| !! | TCATATATTGTAAATAGAAT+AGG | + | chr3_2:18890399-18890418 | Msa0398220:intron | 15.0% |
| !! | CATATATTGTAAATAGAATA+GGG | + | chr3_2:18890400-18890419 | Msa0398220:intron | 15.0% |
| !! | TTACAAAGATAATTAGTAAA+TGG | - | chr3_2:18891360-18891379 | None:intergenic | 15.0% |
| !! | TATAATATCAATTGTTAATC+AGG | + | chr3_2:18892201-18892220 | Msa0398220:intron | 15.0% |
| !! | ATATATATACAAATGAAGTT+TGG | - | chr3_2:18892596-18892615 | None:intergenic | 15.0% |
| !! | TGATAAATAAATATCATATG+TGG | + | chr3_2:18892645-18892664 | Msa0398220:intron | 15.0% |
| !!! | ATTAAGTAAAAATAGTCTTT+TGG | + | chr3_2:18892691-18892710 | Msa0398220:intron | 15.0% |
| !!! | TTAAGTAAAAATAGTCTTTT+GGG | + | chr3_2:18892692-18892711 | Msa0398220:intron | 15.0% |
| !! | ATTGAAAACAACAATCAAAA+GGG | - | chr3_2:18889054-18889073 | None:intergenic | 20.0% |
| !! | AATTGAAAACAACAATCAAA+AGG | - | chr3_2:18889055-18889074 | None:intergenic | 20.0% |
| !!! | TTTTCTTATGTTTTTTCATC+TGG | + | chr3_2:18889093-18889112 | Msa0398220:intron | 20.0% |
| !!! | TTTCTTATGTTTTTTCATCT+GGG | + | chr3_2:18889094-18889113 | Msa0398220:intron | 20.0% |
| !! | TTTCAAAACTAAGATCAAAA+GGG | - | chr3_2:18889233-18889252 | None:intergenic | 20.0% |
| !! | ATTTCAAAACTAAGATCAAA+AGG | - | chr3_2:18889234-18889253 | None:intergenic | 20.0% |
| !!! | TTTTCTTATGTTATGTCATT+TGG | + | chr3_2:18889272-18889291 | Msa0398220:intron | 20.0% |
| !!! | TTTCTTATGTTATGTCATTT+GGG | + | chr3_2:18889273-18889292 | Msa0398220:intron | 20.0% |
| !!! | CTTAATTAGGGTTTTTAAAA+TGG | + | chr3_2:18889501-18889520 | Msa0398220:intron | 20.0% |
| !! | ATTGTTGGTCAAAAAAAAAA+TGG | + | chr3_2:18889529-18889548 | Msa0398220:intron | 20.0% |
| !!! | CATAATTAGGGTTTTTAAAA+TGG | + | chr3_2:18889668-18889687 | Msa0398220:intron | 20.0% |
| !!! | TCTTTTCTTATTTGTTAATG+TGG | + | chr3_2:18890078-18890097 | Msa0398220:intron | 20.0% |
| !! | GCTCTATTTAATACAAATAA+TGG | + | chr3_2:18890123-18890142 | Msa0398220:intron | 20.0% |
| !! | TAATACAAATAATGGTCAAA+TGG | + | chr3_2:18890131-18890150 | Msa0398220:intron | 20.0% |
| !! | AAAAGTGAGAACAATAAAAT+AGG | + | chr3_2:18890444-18890463 | Msa0398220:intron | 20.0% |
| !! | AAAGTGAGAACAATAAAATA+GGG | + | chr3_2:18890445-18890464 | Msa0398220:intron | 20.0% |
| !!! | AATTACATTATCCTTTTGTA+AGG | + | chr3_2:18891017-18891036 | Msa0398220:intron | 20.0% |
| !!! | TATTTTCATACTTTTGTTAG+CGG | + | chr3_2:18891553-18891572 | Msa0398220:intron | 20.0% |
| !!! | GGTTTTTAAAAGTTGAAAAA+AGG | - | chr3_2:18892286-18892305 | None:intergenic | 20.0% |
| !! | CAAAATAAATAAAGAAGAAG+TGG | - | chr3_2:18892509-18892528 | None:intergenic | 20.0% |
| !! | AAAAAATACTTGTTTGTTCA+AGG | - | chr3_2:18892795-18892814 | None:intergenic | 20.0% |
| !! | TTATCTATAGATATACATCA+AGG | - | chr3_2:18892886-18892905 | None:intergenic | 20.0% |
| ! | TGTAAACTTGTGAATCAAAA+GGG | - | chr3_2:18888734-18888753 | None:intergenic | 25.0% |
| !!! | TTCATTTTAACGTAGTTGTT+TGG | + | chr3_2:18889197-18889216 | Msa0398220:intron | 25.0% |
| !! | TTCTTATGTTATGTCATTTG+GGG | + | chr3_2:18889274-18889293 | Msa0398220:intron | 25.0% |
| !!! | ATGAAATAGTGGATAAGTTT+TGG | + | chr3_2:18889417-18889436 | Msa0398220:intron | 25.0% |
| ! | TAATGTGAAATTCTGTTAAG+TGG | + | chr3_2:18889464-18889483 | Msa0398220:intron | 25.0% |
| ! | AATGTGAAATTCTGTTAAGT+GGG | + | chr3_2:18889465-18889484 | Msa0398220:intron | 25.0% |
| !! | TTTAAAATGGACATGATTGT+TGG | + | chr3_2:18889514-18889533 | Msa0398220:intron | 25.0% |
| ! | AAAAAAAATGGACATGATTG+TGG | + | chr3_2:18889541-18889560 | Msa0398220:intron | 25.0% |
| ! | TACAAATAATTGTCAAATGG+TGG | + | chr3_2:18889888-18889907 | Msa0398220:intron | 25.0% |
| ! | AATAAGAAAAGACATACAAG+TGG | - | chr3_2:18890070-18890089 | None:intergenic | 25.0% |
| ! | TGAAAAGAATCACATTAACA+AGG | - | chr3_2:18890298-18890317 | None:intergenic | 25.0% |
| ! | AAGAAGAATAATGATAGTCA+GGG | + | chr3_2:18890344-18890363 | Msa0398220:intron | 25.0% |
| ! | AATTCAAAACCCTAACATAA+GGG | - | chr3_2:18890494-18890513 | None:intergenic | 25.0% |
| ! | AAATTCAAAACCCTAACATA+AGG | - | chr3_2:18890495-18890514 | None:intergenic | 25.0% |
| !!! | GTTAGGGTTTTGAATTTTAT+TGG | + | chr3_2:18890498-18890517 | Msa0398220:intron | 25.0% |
| ! | TGAATTAATTGTGTCTTGAT+TGG | + | chr3_2:18891282-18891301 | Msa0398220:intron | 25.0% |
| ! | GTATGAAAATAAGAGAATCA+TGG | - | chr3_2:18891544-18891563 | None:intergenic | 25.0% |
| ! | ACTGGAAATAAAAAAGTAAC+TGG | + | chr3_2:18891772-18891791 | Msa0398220:intron | 25.0% |
| !!! | TGGAAATAAAAAGTGTTGTT+GGG | + | chr3_2:18891792-18891811 | Msa0398220:intron | 25.0% |
| !!! | TGGAAATAAAAAGTGTTGTT+GGG | + | chr3_2:18891792-18891811 | Msa0398220:intron | 25.0% |
| !! | AACAATAGTCTTTTAGTAGA+AGG | + | chr3_2:18892145-18892164 | Msa0398220:intron | 25.0% |
| !! | TTAGTTCTTACTATCCATTA+TGG | + | chr3_2:18892415-18892434 | Msa0398220:intron | 25.0% |
| !! | GAATAAGTTGAATACCATAA+TGG | - | chr3_2:18892432-18892451 | None:intergenic | 25.0% |
| ! | TTCTTAGAAATTCTGTACTT+TGG | + | chr3_2:18892568-18892587 | Msa0398220:intron | 25.0% |
| ! | TCTTAGAAATTCTGTACTTT+GGG | + | chr3_2:18892569-18892588 | Msa0398220:intron | 25.0% |
| ! | TAACTGTTCAAATGTTTCAA+AGG | - | chr3_2:18892621-18892640 | None:intergenic | 25.0% |
| ! | AACAAAAAAAAGAGCAACTT+GGG | - | chr3_2:18892945-18892964 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTTTTACCCTAT+TGG | + | chr3_2:18892957-18892976 | Msa0398220:intron | 25.0% |
| !!! | TTTTGTTGTTTTACCCTATT+GGG | + | chr3_2:18892958-18892977 | Msa0398220:intron | 25.0% |
| !! | ACTTATTACTGTTTGTGTTT+TGG | + | chr3_2:18893691-18893710 | Msa0398220:three_prime_UTR | 25.0% |
| ! | AAATGAGTTTAATTGCTAAG+TGG | + | chr3_2:18893757-18893776 | Msa0398220:three_prime_UTR | 25.0% |
| CAAATTGGGTAAGAATTCAT+GGG | - | chr3_2:18888654-18888673 | None:intergenic | 30.0% | |
| ACAAATTGGGTAAGAATTCA+TGG | - | chr3_2:18888655-18888674 | None:intergenic | 30.0% | |
| TAAACTTGTGAATCAAAAGG+GGG | - | chr3_2:18888732-18888751 | None:intergenic | 30.0% | |
| GTAAACTTGTGAATCAAAAG+GGG | - | chr3_2:18888733-18888752 | None:intergenic | 30.0% | |
| GTGTAAACTTGTGAATCAAA+AGG | - | chr3_2:18888735-18888754 | None:intergenic | 30.0% | |
| AAGATGTTGAATTTGCAAGT+GGG | - | chr3_2:18888928-18888947 | None:intergenic | 30.0% | |
| AAAGATGTTGAATTTGCAAG+TGG | - | chr3_2:18888929-18888948 | None:intergenic | 30.0% | |
| ! | ATTGTGATAATCTGTTGGTT+GGG | - | chr3_2:18888978-18888997 | None:intergenic | 30.0% |
| AATTGTGATAATCTGTTGGT+TGG | - | chr3_2:18888979-18888998 | None:intergenic | 30.0% | |
| AACCAACAGATTATCACAAT+TGG | + | chr3_2:18888978-18888997 | Msa0398220:CDS | 30.0% | |
| ATCCAATTGTGATAATCTGT+TGG | - | chr3_2:18888983-18889002 | None:intergenic | 30.0% | |
| CTTACAAGATCATATCTGAT+GGG | - | chr3_2:18889022-18889041 | None:intergenic | 30.0% | |
| ACTTACAAGATCATATCTGA+TGG | - | chr3_2:18889023-18889042 | None:intergenic | 30.0% | |
| AAATTGTTGCTGTAGTTGTT+AGG | + | chr3_2:18889372-18889391 | Msa0398220:intron | 30.0% | |
| GATGTCTAGTTATGAAATAG+TGG | + | chr3_2:18889406-18889425 | Msa0398220:intron | 30.0% | |
| TGTTGGATTTCGTCTTAATT+AGG | + | chr3_2:18889488-18889507 | Msa0398220:intron | 30.0% | |
| GTTGGATTTCGTCTTAATTA+GGG | + | chr3_2:18889489-18889508 | Msa0398220:intron | 30.0% | |
| TGATTAGGGTTGCAAAATAA+AGG | + | chr3_2:18889625-18889644 | Msa0398220:intron | 30.0% | |
| GCTATCCATATTGTACTATT+CGG | - | chr3_2:18889971-18889990 | None:intergenic | 30.0% | |
| TACAAATAATGGTCAAATGG+TGG | + | chr3_2:18890134-18890153 | Msa0398220:intron | 30.0% | |
| GATATCCATATTGTCCTATT+CGG | - | chr3_2:18890217-18890236 | None:intergenic | 30.0% | |
| GAAGAAGAATAATGATAGTC+AGG | + | chr3_2:18890343-18890362 | Msa0398220:intron | 30.0% | |
| ! | TTGATTTGATCCCTTATGTT+AGG | + | chr3_2:18890481-18890500 | Msa0398220:intron | 30.0% |
| TGATTTGATCCCTTATGTTA+GGG | + | chr3_2:18890482-18890501 | Msa0398220:intron | 30.0% | |
| TTCAATGCTTCTAATATTGC+AGG | + | chr3_2:18890550-18890569 | Msa0398220:intron | 30.0% | |
| ATACAAGTACAAGCGTTAAT+TGG | + | chr3_2:18890854-18890873 | Msa0398220:CDS | 30.0% | |
| GATGCATATATCAAACATGT+TGG | + | chr3_2:18890962-18890981 | Msa0398220:CDS | 30.0% | |
| CATATATCAAACATGTTGGT+GGG | + | chr3_2:18890966-18890985 | Msa0398220:CDS | 30.0% | |
| GACAGAACAAGAACATTAAA+AGG | + | chr3_2:18891199-18891218 | Msa0398220:intron | 30.0% | |
| GTTTAGCTAATTAACTCTGT+AGG | + | chr3_2:18891334-18891353 | Msa0398220:intron | 30.0% | |
| ! | TTACATGCATTTCAGGTAAA+TGG | - | chr3_2:18891384-18891403 | None:intergenic | 30.0% |
| AGTTATCTTACATGCATTTC+AGG | - | chr3_2:18891391-18891410 | None:intergenic | 30.0% | |
| TGAAATGCATGTAAGATAAC+TGG | + | chr3_2:18891390-18891409 | Msa0398220:intron | 30.0% | |
| TAACTGGTTATATGCATGTT+TGG | + | chr3_2:18891406-18891425 | Msa0398220:intron | 30.0% | |
| ! | TTGTAGCTTTTGTGAAATCA+CGG | + | chr3_2:18891492-18891511 | Msa0398220:intron | 30.0% |
| GAAAATAAGAGAATCATGGT+GGG | - | chr3_2:18891540-18891559 | None:intergenic | 30.0% | |
| TGAAAATAAGAGAATCATGG+TGG | - | chr3_2:18891541-18891560 | None:intergenic | 30.0% | |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr3_2:18891620-18891639 | Msa0398220:intron | 30.0% | |
| !! | CTGGAAATAAAAAGTGTTGT+TGG | + | chr3_2:18891791-18891810 | Msa0398220:intron | 30.0% |
| !! | GGAAATAAAAAGTGTTGTTG+GGG | + | chr3_2:18891793-18891812 | Msa0398220:intron | 30.0% |
| !! | CTGGAAATAAAAAGTGTTGT+TGG | + | chr3_2:18891791-18891810 | Msa0398220:intron | 30.0% |
| !! | GGAAATAAAAAGTGTTGTTG+GGG | + | chr3_2:18891793-18891812 | Msa0398220:intron | 30.0% |
| AACACAACACTAAACTCATT+TGG | - | chr3_2:18891957-18891976 | None:intergenic | 30.0% | |
| TTTCTGTTATCCCTGAATTA+TGG | - | chr3_2:18892230-18892249 | None:intergenic | 30.0% | |
| ATAATTCAGGGATAACAGAA+AGG | + | chr3_2:18892229-18892248 | Msa0398220:intron | 30.0% | |
| !! | CAACTTTTAAAAACCATTGC+CGG | + | chr3_2:18892291-18892310 | Msa0398220:intron | 30.0% |
| CTTAGAAATTCTGTACTTTG+GGG | + | chr3_2:18892570-18892589 | Msa0398220:intron | 30.0% | |
| !! | TAATTTTGACGACAACAATG+AGG | + | chr3_2:18892719-18892738 | Msa0398220:intron | 30.0% |
| AACAATGAGGACCTTATATA+TGG | + | chr3_2:18892732-18892751 | Msa0398220:intron | 30.0% | |
| CAACAAAAAAAAGAGCAACT+TGG | - | chr3_2:18892946-18892965 | None:intergenic | 30.0% | |
| AATGCCATTATTAGACATCA+AGG | - | chr3_2:18893049-18893068 | None:intergenic | 30.0% | |
| TTGATGTCTAATAATGGCAT+TGG | + | chr3_2:18893048-18893067 | Msa0398220:CDS | 30.0% | |
| CAAGATTAATTGTAACAGCA+GGG | + | chr3_2:18893167-18893186 | Msa0398220:CDS | 30.0% | |
| ATATACATTACACACTTAGC+CGG | + | chr3_2:18893192-18893211 | Msa0398220:CDS | 30.0% | |
| TAAGAAACACTTGAAGAACT+TGG | + | chr3_2:18893215-18893234 | Msa0398220:CDS | 30.0% | |
| TCAAATCCAAAAATCGATGT+CGG | + | chr3_2:18893246-18893265 | Msa0398220:CDS | 30.0% | |
| ACCGCAACAAATACTTTAAT+CGG | + | chr3_2:18893291-18893310 | Msa0398220:CDS | 30.0% | |
| AAGAAACGTAAAGTTGTAGA+AGG | + | chr3_2:18893381-18893400 | Msa0398220:CDS | 30.0% | |
| ! | GTTTTCAATTTTCACCTTGT+TGG | + | chr3_2:18893468-18893487 | Msa0398220:CDS | 30.0% |
| TTTAATTGCTAAGTGGTAGA+TGG | + | chr3_2:18893764-18893783 | Msa0398220:three_prime_UTR | 30.0% | |
| !! | TTGAGGGTACATTTTGGTAT+TGG | - | chr3_2:18888804-18888823 | None:intergenic | 35.0% |
| !! | TTGTTGTTGAGGGTACATTT+TGG | - | chr3_2:18888810-18888829 | None:intergenic | 35.0% |
| TGTTGTTGCTGGAAATTGTA+GGG | - | chr3_2:18888845-18888864 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGCTGGAAATTGT+AGG | - | chr3_2:18888846-18888865 | None:intergenic | 35.0% |
| TCAGGGAATGATGAATAGTA+GGG | - | chr3_2:18888878-18888897 | None:intergenic | 35.0% | |
| ATCAGGGAATGATGAATAGT+AGG | - | chr3_2:18888879-18888898 | None:intergenic | 35.0% | |
| ! | TTATGTTATGTCATTTGGGG+TGG | + | chr3_2:18889277-18889296 | Msa0398220:intron | 35.0% |
| AAATTCTGTTAAGTGGGTGT+TGG | + | chr3_2:18889471-18889490 | Msa0398220:intron | 35.0% | |
| ATGAAATCATACCACGATTG+TGG | + | chr3_2:18889591-18889610 | Msa0398220:intron | 35.0% | |
| ! | TGGCGTGATTTTCATGATTA+GGG | + | chr3_2:18889611-18889630 | Msa0398220:intron | 35.0% |
| ATGGCGTGATTGTCATAATT+AGG | + | chr3_2:18889655-18889674 | Msa0398220:intron | 35.0% | |
| TGGCGTGATTGTCATAATTA+GGG | + | chr3_2:18889656-18889675 | Msa0398220:intron | 35.0% | |
| !! | AGTGTTTTAAGTCGTGATTG+CGG | - | chr3_2:18889808-18889827 | None:intergenic | 35.0% |
| CAACACCGAATAGTACAATA+TGG | + | chr3_2:18889963-18889982 | Msa0398220:intron | 35.0% | |
| ATTAATGATTGCCACGAGTT+TGG | - | chr3_2:18890019-18890038 | None:intergenic | 35.0% | |
| !! | TATTCGGTGTTGTCAATAAC+GGG | - | chr3_2:18890201-18890220 | None:intergenic | 35.0% |
| !! | CTATTCGGTGTTGTCAATAA+CGG | - | chr3_2:18890202-18890221 | None:intergenic | 35.0% |
| GTGAGAACAATAAAATAGGG+AGG | + | chr3_2:18890448-18890467 | Msa0398220:intron | 35.0% | |
| TCATTGCCATAAATTTGTGG+TGG | - | chr3_2:18890644-18890663 | None:intergenic | 35.0% | |
| GTCTCATTGCCATAAATTTG+TGG | - | chr3_2:18890647-18890666 | None:intergenic | 35.0% | |
| TCTTATGAAAGTCACATAGC+TGG | + | chr3_2:18890749-18890768 | Msa0398220:CDS | 35.0% | |
| GCATATATCAAACATGTTGG+TGG | + | chr3_2:18890965-18890984 | Msa0398220:CDS | 35.0% | |
| TTAATTAGCTAAACCCACAG+TGG | - | chr3_2:18891328-18891347 | None:intergenic | 35.0% | |
| GAATTCTATCTATCCGATGT+GGG | - | chr3_2:18891601-18891620 | None:intergenic | 35.0% | |
| AGAATTCTATCTATCCGATG+TGG | - | chr3_2:18891602-18891621 | None:intergenic | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr3_2:18891623-18891642 | Msa0398220:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr3_2:18891667-18891686 | None:intergenic | 35.0% | |
| ATGAAGACAAAGGCTATAAG+TGG | + | chr3_2:18891818-18891837 | Msa0398220:intron | 35.0% | |
| GAAGACAAAGGCTATATAAG+TGG | + | chr3_2:18891914-18891933 | Msa0398220:intron | 35.0% | |
| ACAAAGGCTATATAAGTGGA+GGG | + | chr3_2:18891918-18891937 | Msa0398220:intron | 35.0% | |
| !!! | TATATAAGTGGAGGGCATTT+TGG | + | chr3_2:18891926-18891945 | Msa0398220:intron | 35.0% |
| !!! | ATATAAGTGGAGGGCATTTT+GGG | + | chr3_2:18891927-18891946 | Msa0398220:intron | 35.0% |
| CATGGTCAAATTGCAGAAAT+CGG | - | chr3_2:18891987-18892006 | None:intergenic | 35.0% | |
| TCTGCAATTTGACCATGAAA+TGG | + | chr3_2:18891990-18892009 | Msa0398220:intron | 35.0% | |
| AGTAGAAGGAGTAAATTACG+TGG | + | chr3_2:18892159-18892178 | Msa0398220:intron | 35.0% | |
| TAATCAGGTCTCCATAATTC+AGG | + | chr3_2:18892216-18892235 | Msa0398220:intron | 35.0% | |
| AATCAGGTCTCCATAATTCA+GGG | + | chr3_2:18892217-18892236 | Msa0398220:intron | 35.0% | |
| ! | TAGAAGATGCCACTTCTAAA+GGG | - | chr3_2:18892318-18892337 | None:intergenic | 35.0% |
| ! | TTAGAAGATGCCACTTCTAA+AGG | - | chr3_2:18892319-18892338 | None:intergenic | 35.0% |
| TTCCTGTATGGCCATATATA+AGG | - | chr3_2:18892746-18892765 | None:intergenic | 35.0% | |
| !!! | TATTTTTTGCGATCCACGAT+TGG | + | chr3_2:18892807-18892826 | Msa0398220:intron | 35.0% |
| ACTCAGAAACATTCCACTAA+TGG | - | chr3_2:18892999-18893018 | None:intergenic | 35.0% | |
| GTTGCCTTGATGTCTAATAA+TGG | + | chr3_2:18893042-18893061 | Msa0398220:CDS | 35.0% | |
| !! | TTCTTGGCAGCTTTTTGAAA+TGG | - | chr3_2:18893111-18893130 | None:intergenic | 35.0% |
| AAAAGCTGCCAAGAAAATCA+AGG | + | chr3_2:18893116-18893135 | Msa0398220:CDS | 35.0% | |
| GCAAGATTAATTGTAACAGC+AGG | + | chr3_2:18893166-18893185 | Msa0398220:CDS | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | - | chr3_2:18893214-18893233 | None:intergenic | 35.0% | |
| ! | GATTAAAGTATTTGTTGCGG+TGG | - | chr3_2:18893292-18893311 | None:intergenic | 35.0% |
| ! | CCCGATTAAAGTATTTGTTG+CGG | - | chr3_2:18893295-18893314 | None:intergenic | 35.0% |
| CCGCAACAAATACTTTAATC+GGG | + | chr3_2:18893292-18893311 | Msa0398220:CDS | 35.0% | |
| !!! | CTTCTTTGGTTTTGGTTGAT+CGG | - | chr3_2:18893337-18893356 | None:intergenic | 35.0% |
| AAACGTAAAGTTGTAGAAGG+AGG | + | chr3_2:18893384-18893403 | Msa0398220:CDS | 35.0% | |
| AATGTGCACATTATGCAATG+TGG | + | chr3_2:18893428-18893447 | Msa0398220:CDS | 35.0% | |
| GGTGAAAATTGAAAACTGTC+TGG | - | chr3_2:18893464-18893483 | None:intergenic | 35.0% | |
| ATGCAGTTTGTCATTGCTAA+TGG | + | chr3_2:18893611-18893630 | Msa0398220:three_prime_UTR | 35.0% | |
| ! | TAGCCTTTTACTTGTGTTAC+AGG | + | chr3_2:18893667-18893686 | Msa0398220:three_prime_UTR | 35.0% |
| GTTCCTGTAACACAAGTAAA+AGG | - | chr3_2:18893673-18893692 | None:intergenic | 35.0% | |
| ATAACTTCCATGATGCATTG+AGG | + | chr3_2:18893728-18893747 | Msa0398220:three_prime_UTR | 35.0% | |
| AATCAAAAGGGGGTGGAAAA+TGG | - | chr3_2:18888722-18888741 | None:intergenic | 40.0% | |
| ! | GAGCTTGGTATTGTTGTTGA+GGG | - | chr3_2:18888820-18888839 | None:intergenic | 40.0% |
| ! | TGAGCTTGGTATTGTTGTTG+AGG | - | chr3_2:18888821-18888840 | None:intergenic | 40.0% |
| ! | GTTGTTGTTGTTGTTGTTGC+TGG | - | chr3_2:18888856-18888875 | None:intergenic | 40.0% |
| !! | TATCTGATGGGTTCAGATTG+AGG | - | chr3_2:18889010-18889029 | None:intergenic | 40.0% |
| TGGTGTGACTGTCATAGTTA+GGG | + | chr3_2:18889561-18889580 | Msa0398220:intron | 40.0% | |
| ! | GTGGCGTGATTTTCATGATT+AGG | + | chr3_2:18889610-18889629 | Msa0398220:intron | 40.0% |
| AGGGTTGCAAAATAAAGGTG+AGG | + | chr3_2:18889630-18889649 | Msa0398220:intron | 40.0% | |
| GCAAAATAAAGGTGAGGCAA+TGG | + | chr3_2:18889636-18889655 | Msa0398220:intron | 40.0% | |
| ! | CAAATGGTGGCTTTTGTTAG+TGG | + | chr3_2:18889901-18889920 | Msa0398220:intron | 40.0% |
| !! | CTATTCGGTGTTGTCAGTAA+CGG | - | chr3_2:18889956-18889975 | None:intergenic | 40.0% |
| ATAACTAGAAGCCAAACTCG+TGG | + | chr3_2:18890005-18890024 | Msa0398220:intron | 40.0% | |
| CGTTATTGACAACACCGAAT+AGG | + | chr3_2:18890200-18890219 | Msa0398220:intron | 40.0% | |
| CAACACCGAATAGGACAATA+TGG | + | chr3_2:18890209-18890228 | Msa0398220:intron | 40.0% | |
| CATGAAACAGTCACAGTCAT+AGG | - | chr3_2:18890251-18890270 | None:intergenic | 40.0% | |
| ATGACTGTGACTGTTTCATG+TGG | + | chr3_2:18890251-18890270 | Msa0398220:intron | 40.0% | |
| CTTCTAATATTGCAGGCTGT+TGG | + | chr3_2:18890557-18890576 | Msa0398220:intron | 40.0% | |
| ! | AGTTTAACTTCTGCGTGGAA+TGG | + | chr3_2:18890611-18890630 | Msa0398220:CDS | 40.0% |
| ACATGGCCACCACAAATTTA+TGG | + | chr3_2:18890635-18890654 | Msa0398220:CDS | 40.0% | |
| !! | TTGGTGACTTTGGTTTGGTT+AGG | - | chr3_2:18890683-18890702 | None:intergenic | 40.0% |
| ! | AAGCTTTGGTGACTTTGGTT+TGG | - | chr3_2:18890688-18890707 | None:intergenic | 40.0% |
| ! | TCTCAAAGCTTTGGTGACTT+TGG | - | chr3_2:18890693-18890712 | None:intergenic | 40.0% |
| CACTTCACATCTCAAAGCTT+TGG | - | chr3_2:18890702-18890721 | None:intergenic | 40.0% | |
| TTCGCATGAGATGCAATAGT+AGG | - | chr3_2:18890812-18890831 | None:intergenic | 40.0% | |
| ! | ATCAACCTGTTTCTTAGGCT+CGG | - | chr3_2:18890897-18890916 | None:intergenic | 40.0% |
| ! | GCAGAATCAACCTGTTTCTT+AGG | - | chr3_2:18890902-18890921 | None:intergenic | 40.0% |
| !! | GAAACAGGTTGATTCTGCAA+CGG | + | chr3_2:18890904-18890923 | Msa0398220:CDS | 40.0% |
| GTCGCATGTAACCTTACAAA+AGG | - | chr3_2:18891031-18891050 | None:intergenic | 40.0% | |
| TGTACCTATTCTCTTGGTCA+TGG | + | chr3_2:18891241-18891260 | Msa0398220:intron | 40.0% | |
| ! | TCGTAGCTTTTGCAGAATCA+CGG | - | chr3_2:18891467-18891486 | None:intergenic | 40.0% |
| ! | TAGCTTTTGTGAAATCACGG+TGG | + | chr3_2:18891495-18891514 | Msa0398220:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr3_2:18891665-18891684 | Msa0398220:intron | 40.0% |
| TTGTCTTGTCACGAATATCG+AGG | - | chr3_2:18891691-18891710 | None:intergenic | 40.0% | |
| ATCCACTGCGAAAAAGTAAC+TGG | + | chr3_2:18891747-18891766 | Msa0398220:intron | 40.0% | |
| !!! | TACCAGTTACTTTTTCGCAG+TGG | - | chr3_2:18891752-18891771 | None:intergenic | 40.0% |
| GCGAAAAAGTAACTGGTAAC+TGG | + | chr3_2:18891754-18891773 | Msa0398220:intron | 40.0% | |
| AAGACAAAGGCTATAAGTGG+AGG | + | chr3_2:18891821-18891840 | Msa0398220:intron | 40.0% | |
| AGACAAAGGCTATAAGTGGA+GGG | + | chr3_2:18891822-18891841 | Msa0398220:intron | 40.0% | |
| !!! | CTATAAGTGGAGGGCATTTT+GGG | + | chr3_2:18891831-18891850 | Msa0398220:intron | 40.0% |
| ATCCACTGCGAAAAAGTAAC+TGG | + | chr3_2:18891747-18891766 | Msa0398220:intron | 40.0% | |
| !!! | TTCCAGTTACTTTTTCGCAG+TGG | - | chr3_2:18891871-18891890 | None:intergenic | 40.0% |
| GACAAAGGCTATATAAGTGG+AGG | + | chr3_2:18891917-18891936 | Msa0398220:intron | 40.0% | |
| TAGCTAGGCACTACTGAAAT+CGG | - | chr3_2:18892063-18892082 | None:intergenic | 40.0% | |
| TATACCTCTGTAGTTAGCAG+AGG | - | chr3_2:18892122-18892141 | None:intergenic | 40.0% | |
| ! | AGAAGATGCCACTTCTAAAG+GGG | - | chr3_2:18892317-18892336 | None:intergenic | 40.0% |
| CGATCTTTCTTGAAAGCTGT+AGG | + | chr3_2:18892383-18892402 | Msa0398220:intron | 40.0% | |
| GACCTTATATATGGCCATAC+AGG | + | chr3_2:18892741-18892760 | Msa0398220:intron | 40.0% | |
| GAGTGCTATCATTTCCTGTA+TGG | - | chr3_2:18892758-18892777 | None:intergenic | 40.0% | |
| GAGCAACTTGGGAAAAATGT+AGG | - | chr3_2:18892934-18892953 | None:intergenic | 40.0% | |
| ! | TTTTACCCTATTGGGATGCA+AGG | + | chr3_2:18892966-18892985 | Msa0398220:intron | 40.0% |
| TTAGACATCAAGGCAACCTA+CGG | - | chr3_2:18893039-18893058 | None:intergenic | 40.0% | |
| ATTGCCGAATTCAAGCGTAA+CGG | + | chr3_2:18893078-18893097 | Msa0398220:CDS | 40.0% | |
| AACACCGTTACGCTTGAATT+CGG | - | chr3_2:18893085-18893104 | None:intergenic | 40.0% | |
| ! | CTGAGCAACCTTGATTTTCT+TGG | - | chr3_2:18893127-18893146 | None:intergenic | 40.0% |
| ! | TAAAGTATTTGTTGCGGTGG+CGG | - | chr3_2:18893289-18893308 | None:intergenic | 40.0% |
| CGATCAACCAAAACCAAAGA+AGG | + | chr3_2:18893335-18893354 | Msa0398220:CDS | 40.0% | |
| !! | TCTGATGCCTTCTTTGGTTT+TGG | - | chr3_2:18893345-18893364 | None:intergenic | 40.0% |
| ! | TCAAGTTCTGATGCCTTCTT+TGG | - | chr3_2:18893351-18893370 | None:intergenic | 40.0% |
| TCTCATCTAGACTTGAAGAC+AGG | + | chr3_2:18893577-18893596 | Msa0398220:three_prime_UTR | 40.0% | |
| CTCATCTAGACTTGAAGACA+GGG | + | chr3_2:18893578-18893597 | Msa0398220:three_prime_UTR | 40.0% | |
| TTGCAAACCTCAATGCATCA+TGG | - | chr3_2:18893738-18893757 | None:intergenic | 40.0% | |
| ACTTGTGAATCAAAAGGGGG+TGG | - | chr3_2:18888729-18888748 | None:intergenic | 45.0% | |
| GGAAATTGTAGGGTTGAGCT+TGG | - | chr3_2:18888835-18888854 | None:intergenic | 45.0% | |
| GAGGATGAAGTGAAGGATCA+GGG | - | chr3_2:18888895-18888914 | None:intergenic | 45.0% | |
| GAGGTGTAAAGAGAAACAGG+AGG | - | chr3_2:18888956-18888975 | None:intergenic | 45.0% | |
| ! | TGGGAGGTGTAAAGAGAAAC+AGG | - | chr3_2:18888959-18888978 | None:intergenic | 45.0% |
| ! | GTGATAATCTGTTGGTTGGG+AGG | - | chr3_2:18888975-18888994 | None:intergenic | 45.0% |
| GTGGTGTGACTGTCATAGTT+AGG | + | chr3_2:18889560-18889579 | Msa0398220:intron | 45.0% | |
| TGAAAATCACGCCACAATCG+TGG | - | chr3_2:18889605-18889624 | None:intergenic | 45.0% | |
| GTGTTGTCAGTAACGGTTTG+CGG | - | chr3_2:18889949-18889968 | None:intergenic | 45.0% | |
| CACGCAGAAGTTAAACTTGC+AGG | - | chr3_2:18890608-18890627 | None:intergenic | 45.0% | |
| ! | CTGCAAGTTTAACTTCTGCG+TGG | + | chr3_2:18890606-18890625 | Msa0398220:CDS | 45.0% |
| CCACTAGTGTGCATTATGTG+TGG | - | chr3_2:18891120-18891139 | None:intergenic | 45.0% | |
| CCACACATAATGCACACTAG+TGG | + | chr3_2:18891117-18891136 | Msa0398220:intron | 45.0% | |
| CCAAGAGAATAGGTACAGAC+TGG | - | chr3_2:18891238-18891257 | None:intergenic | 45.0% | |
| CCAGTCTGTACCTATTCTCT+TGG | + | chr3_2:18891235-18891254 | Msa0398220:intron | 45.0% | |
| AGAGCCATGACCAAGAGAAT+AGG | - | chr3_2:18891248-18891267 | None:intergenic | 45.0% | |
| GTGTCTTGATTGGAGACACA+AGG | + | chr3_2:18891292-18891311 | Msa0398220:intron | 45.0% | |
| TTGGAGACACAAGGCAAGAT+AGG | + | chr3_2:18891301-18891320 | Msa0398220:intron | 45.0% | |
| ATGCATGTTTGGCATCACTG+TGG | + | chr3_2:18891417-18891436 | Msa0398220:intron | 45.0% | |
| TGCATGTTTGGCATCACTGT+GGG | + | chr3_2:18891418-18891437 | Msa0398220:intron | 45.0% | |
| !! | ATGGTGGGTTGCCAAAATCA+TGG | - | chr3_2:18891525-18891544 | None:intergenic | 45.0% |
| ! | TTTTGTTAGCGGCCAACACT+CGG | + | chr3_2:18891564-18891583 | Msa0398220:intron | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+CGG | - | chr3_2:18891658-18891677 | None:intergenic | 45.0% |
| ! | TTTTTCGCAGTGGATGAGTG+AGG | - | chr3_2:18891742-18891761 | None:intergenic | 45.0% |
| TGTTGGGGAGATGAAGACAA+AGG | + | chr3_2:18891808-18891827 | Msa0398220:intron | 45.0% | |
| !!! | GCTATAAGTGGAGGGCATTT+TGG | + | chr3_2:18891830-18891849 | Msa0398220:intron | 45.0% |
| ! | TTTTTCGCAGTGGATGAGTG+AGG | - | chr3_2:18891742-18891761 | None:intergenic | 45.0% |
| TGTTGGGGAGATGAAGACAA+AGG | + | chr3_2:18891808-18891827 | Msa0398220:intron | 45.0% | |
| TCAACGGTGCAACCATTTCA+TGG | - | chr3_2:18892005-18892024 | None:intergenic | 45.0% | |
| !! | AAATTTTAACGTAGCGCCCG+TGG | - | chr3_2:18892031-18892050 | None:intergenic | 45.0% |
| AGCTAGGCACTACTGAAATC+GGG | - | chr3_2:18892062-18892081 | None:intergenic | 45.0% | |
| AAAACCAGTGTTGCCAATCG+TGG | - | chr3_2:18892823-18892842 | None:intergenic | 45.0% | |
| TTACGCCTTGCATCCCAATA+GGG | - | chr3_2:18892974-18892993 | None:intergenic | 45.0% | |
| TTTACGCCTTGCATCCCAAT+AGG | - | chr3_2:18892975-18892994 | None:intergenic | 45.0% | |
| AACCTACGGGTCACAAAAAG+TGG | - | chr3_2:18893025-18893044 | None:intergenic | 45.0% | |
| TAGACATCAAGGCAACCTAC+GGG | - | chr3_2:18893038-18893057 | None:intergenic | 45.0% | |
| CGCTTGAATTCGGCAATAGA+TGG | - | chr3_2:18893075-18893094 | None:intergenic | 45.0% | |
| GAATTCAAGCGTAACGGTGT+TGG | + | chr3_2:18893084-18893103 | Msa0398220:CDS | 45.0% | |
| !!! | CTAGTGCCGACATCGATTTT+TGG | - | chr3_2:18893255-18893274 | None:intergenic | 45.0% |
| ! | CAGCATGTTTCTGACCAACA+AGG | - | chr3_2:18893485-18893504 | None:intergenic | 45.0% |
| TGGTCAGAAACATGCTGCTA+TGG | + | chr3_2:18893488-18893507 | Msa0398220:CDS | 45.0% | |
| ACATGCTGCTATGGTGAAGA+AGG | + | chr3_2:18893497-18893516 | Msa0398220:CDS | 45.0% | |
| GGAGGATGAAGTGAAGGATC+AGG | - | chr3_2:18888896-18888915 | None:intergenic | 50.0% | |
| GATCCTTCACTTCATCCTCC+TGG | + | chr3_2:18888896-18888915 | Msa0398220:CDS | 50.0% | |
| TGTAGCCACAGTCGCAGTAT+CGG | - | chr3_2:18889695-18889714 | None:intergenic | 50.0% | |
| TTCGATCTCTGCTGCAAACG+AGG | + | chr3_2:18889726-18889745 | Msa0398220:intron | 50.0% | |
| CGAGTGTGAGTGTCTTTACG+TGG | + | chr3_2:18890041-18890060 | Msa0398220:intron | 50.0% | |
| GACGCTTCTGACTTTCACTC+TGG | + | chr3_2:18890520-18890539 | Msa0398220:intron | 50.0% | |
| CTTCTGCGTGGAATGGTACA+TGG | + | chr3_2:18890618-18890637 | Msa0398220:CDS | 50.0% | |
| GCAATCCGAGCCTAAGAAAC+AGG | + | chr3_2:18890889-18890908 | Msa0398220:CDS | 50.0% | |
| AAGGCAAGATAGGACCACTG+TGG | + | chr3_2:18891311-18891330 | Msa0398220:intron | 50.0% | |
| AGGCAAGATAGGACCACTGT+GGG | + | chr3_2:18891312-18891331 | Msa0398220:intron | 50.0% | |
| ! | ACGGTGGCTCACCATGATTT+TGG | + | chr3_2:18891511-18891530 | Msa0398220:intron | 50.0% |
| GACTAAATCCCACCGAGTGT+TGG | - | chr3_2:18891579-18891598 | None:intergenic | 50.0% | |
| GGTGGGATTTAGTCCCACAT+CGG | + | chr3_2:18891585-18891604 | Msa0398220:intron | 50.0% | |
| !! | CCGTACAAGCCGGTTTTGTA+AGG | + | chr3_2:18891655-18891674 | Msa0398220:intron | 50.0% |
| GCTAGGCACTACTGAAATCG+GGG | - | chr3_2:18892061-18892080 | None:intergenic | 50.0% | |
| AATGCCATGACGTGTCGTAG+AGG | - | chr3_2:18892086-18892105 | None:intergenic | 50.0% | |
| GTAGTTAGCAGAGGCTGTAG+CGG | - | chr3_2:18892113-18892132 | None:intergenic | 50.0% | |
| ACAGCCTCTGCTAACTACAG+AGG | + | chr3_2:18892115-18892134 | Msa0398220:intron | 50.0% | |
| AGATCGTACAAGTCTGTCGC+AGG | - | chr3_2:18892369-18892388 | None:intergenic | 50.0% | |
| GCAAGGCGTAAAGCCATTAG+TGG | + | chr3_2:18892983-18893002 | Msa0398220:intron | 50.0% | |
| !!! | GACCACTTTTTGTGACCCGT+AGG | + | chr3_2:18893020-18893039 | Msa0398220:intron | 50.0% |
| TCAAGGTTGCTCAGTCTGCA+TGG | + | chr3_2:18893133-18893152 | Msa0398220:CDS | 50.0% | |
| !! | TCGGTACCTGGCTTTTCTTG+TGG | - | chr3_2:18893318-18893337 | None:intergenic | 50.0% |
| !!! | GGTTTTGGTTGATCGGTACC+TGG | - | chr3_2:18893330-18893349 | None:intergenic | 50.0% |
| CTGCTATGGTGAAGAAGGCA+GGG | + | chr3_2:18893502-18893521 | Msa0398220:CDS | 50.0% | |
| TATGGTGAAGAAGGCAGGGT+CGG | + | chr3_2:18893506-18893525 | Msa0398220:CDS | 50.0% | |
| GTGCCAGGAGGATGAAGTGA+AGG | - | chr3_2:18888902-18888921 | None:intergenic | 55.0% | |
| TTTGCAAGTGGGTCAGTGCC+AGG | - | chr3_2:18888917-18888936 | None:intergenic | 55.0% | |
| GGCTCGGATTGCTTGACAAC+AGG | - | chr3_2:18890881-18890900 | None:intergenic | 55.0% | |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | chr3_2:18891653-18891672 | None:intergenic | 55.0% |
| GACGTGTCGTAGAGGTAGCT+AGG | - | chr3_2:18892078-18892097 | None:intergenic | 55.0% | |
| GCTACCTCTACGACACGTCA+TGG | + | chr3_2:18892079-18892098 | Msa0398220:intron | 55.0% | |
| ! | ACTTCTAAAGGGGCCGGCAA+TGG | - | chr3_2:18892307-18892326 | None:intergenic | 55.0% |
| ! | ATTGCCGGCCCCTTTAGAAG+TGG | + | chr3_2:18892306-18892325 | Msa0398220:intron | 55.0% |
| ! | GATGCCACTTCTAAAGGGGC+CGG | - | chr3_2:18892313-18892332 | None:intergenic | 55.0% |
| AAGTCTGTCGCAGGTGTGCA+CGG | - | chr3_2:18892360-18892379 | None:intergenic | 55.0% | |
| CGATCCACGATTGGCAACAC+TGG | + | chr3_2:18892816-18892835 | Msa0398220:intron | 55.0% | |
| ! | AGTATTTGTTGCGGTGGCGG+TGG | - | chr3_2:18893286-18893305 | None:intergenic | 55.0% |
| ATCGGGCCACAAGAAAAGCC+AGG | + | chr3_2:18893309-18893328 | Msa0398220:CDS | 55.0% | |
| GAAGGAGGAGCTGCAGTTGA+TGG | + | chr3_2:18893399-18893418 | Msa0398220:CDS | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | + | chr3_2:18893501-18893520 | Msa0398220:CDS | 55.0% | |
| ! | CGGTCACTGGTTGAGCTGAT+CGG | + | chr3_2:18893526-18893545 | Msa0398220:exon | 55.0% |
| TGGTTGAGCTGATCGGTCAC+TGG | + | chr3_2:18893533-18893552 | Msa0398220:exon | 55.0% | |
| ! | AGCTGATCGGTCACTGGTTG+AGG | + | chr3_2:18893539-18893558 | Msa0398220:exon | 55.0% |
| ATGGGCCGATACTGCGACTG+TGG | + | chr3_2:18889687-18889706 | Msa0398220:intron | 60.0% | |
| ! | TGGGAGAAAGCACGCTGCTC+AGG | + | chr3_2:18890985-18891004 | Msa0398220:CDS | 60.0% |
| TGTTAGCGGCCAACACTCGG+TGG | + | chr3_2:18891567-18891586 | Msa0398220:intron | 60.0% | |
| GTTAGCGGCCAACACTCGGT+GGG | + | chr3_2:18891568-18891587 | Msa0398220:intron | 60.0% | |
| GCACTCCTCACCGTACAAGC+CGG | + | chr3_2:18891645-18891664 | Msa0398220:intron | 60.0% | |
| ! | GGTTGCACCGTTGACTGCCA+CGG | + | chr3_2:18892011-18892030 | Msa0398220:intron | 60.0% |
| ! | GTTGCACCGTTGACTGCCAC+GGG | + | chr3_2:18892012-18892031 | Msa0398220:intron | 60.0% |
| AAGAAGGCAGGGTCGGTCAC+TGG | + | chr3_2:18893513-18893532 | Msa0398220:CDS | 60.0% | |
| GCAAGTGGGTCAGTGCCAGG+AGG | - | chr3_2:18888914-18888933 | None:intergenic | 65.0% | |
| GTAGCGCCCGTGGCAGTCAA+CGG | - | chr3_2:18892021-18892040 | None:intergenic | 65.0% | |
| ! | TGTTGCGGTGGCGGTGGAAG+TGG | - | chr3_2:18893280-18893299 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 18888632 | 18893809 | 18888632 | ID=Msa0398220;Name=Msa0398220 |
| chr3_2 | mRNA | 18888632 | 18893809 | 18888632 | ID=Msa0398220-mRNA-1;Parent=Msa0398220;Name=Msa0398220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=180|1|1|1|1|1|3|270|385 |
| chr3_2 | exon | 18888632 | 18889036 | 18888632 | ID=Msa0398220-mRNA-1:exon:4187;Parent=Msa0398220-mRNA-1 |
| chr3_2 | exon | 18890572 | 18891006 | 18890572 | ID=Msa0398220-mRNA-1:exon:4188;Parent=Msa0398220-mRNA-1 |
| chr3_2 | exon | 18893042 | 18893809 | 18893042 | ID=Msa0398220-mRNA-1:exon:4189;Parent=Msa0398220-mRNA-1 |
| chr3_2 | five_prime_UTR | 18888632 | 18888811 | 18888632 | ID=Msa0398220-mRNA-1:five_prime_utr;Parent=Msa0398220-mRNA-1 |
| chr3_2 | CDS | 18888812 | 18889036 | 18888812 | ID=Msa0398220-mRNA-1:cds;Parent=Msa0398220-mRNA-1 |
| chr3_2 | CDS | 18890572 | 18891006 | 18890572 | ID=Msa0398220-mRNA-1:cds;Parent=Msa0398220-mRNA-1 |
| chr3_2 | CDS | 18893042 | 18893539 | 18893042 | ID=Msa0398220-mRNA-1:cds;Parent=Msa0398220-mRNA-1 |
| chr3_2 | three_prime_UTR | 18893540 | 18893809 | 18893540 | ID=Msa0398220-mRNA-1:three_prime_utr;Parent=Msa0398220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
