Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399430 | PNX83264.1 | 71.809 | 376 | 102 | 2 | 170 | 541 | 90 | 465 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399430 | sp|Q9SZL8|FRS5_ARATH | 33.803 | 355 | 226 | 5 | 193 | 540 | 77 | 429 | 1.72e-55 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399430 | A0A2K3LXK3 | 71.809 | 376 | 102 | 2 | 170 | 541 | 90 | 465 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0399430 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399430 | MtrunA17_Chr2g0287651 | 70.270 | 370 | 110 | 0 | 172 | 541 | 58 | 427 | 0.0 | 575 |
| Msa0399430 | MtrunA17_Chr1g0203051 | 39.141 | 419 | 248 | 3 | 127 | 540 | 12 | 428 | 4.79e-97 | 308 |
| Msa0399430 | MtrunA17_Chr5g0448761 | 34.349 | 361 | 224 | 6 | 193 | 542 | 64 | 422 | 1.86e-57 | 205 |
| Msa0399430 | MtrunA17_Chr1g0202341 | 31.389 | 360 | 235 | 6 | 188 | 540 | 50 | 404 | 3.53e-52 | 189 |
| Msa0399430 | MtrunA17_Chr2g0324011 | 33.333 | 354 | 226 | 4 | 193 | 540 | 14 | 363 | 4.03e-52 | 187 |
| Msa0399430 | MtrunA17_Chr8g0363841 | 32.479 | 351 | 225 | 5 | 197 | 540 | 25 | 370 | 2.09e-50 | 184 |
| Msa0399430 | MtrunA17_Chr3g0082121 | 32.687 | 361 | 216 | 6 | 193 | 542 | 47 | 391 | 8.39e-50 | 182 |
| Msa0399430 | MtrunA17_Chr3g0080351 | 30.541 | 370 | 215 | 8 | 188 | 540 | 75 | 419 | 2.70e-49 | 182 |
| Msa0399430 | MtrunA17_Chr1g0207551 | 30.791 | 354 | 233 | 5 | 193 | 540 | 38 | 385 | 1.30e-48 | 180 |
| Msa0399430 | MtrunA17_Chr1g0203721 | 31.081 | 370 | 233 | 8 | 186 | 542 | 61 | 421 | 6.04e-47 | 176 |
| Msa0399430 | MtrunA17_Chr5g0441581 | 29.775 | 356 | 230 | 5 | 193 | 543 | 36 | 376 | 4.83e-46 | 171 |
| Msa0399430 | MtrunA17_Chr6g0458391 | 31.016 | 374 | 223 | 10 | 180 | 542 | 214 | 563 | 1.23e-45 | 171 |
| Msa0399430 | MtrunA17_Chr6g0458391 | 33.571 | 140 | 79 | 6 | 193 | 323 | 95 | 229 | 9.35e-13 | 71.2 |
| Msa0399430 | MtrunA17_Chr1g0198761 | 31.366 | 322 | 209 | 5 | 195 | 506 | 53 | 372 | 1.94e-45 | 171 |
| Msa0399430 | MtrunA17_Chr2g0329031 | 28.451 | 355 | 235 | 6 | 192 | 540 | 17 | 358 | 4.77e-44 | 166 |
| Msa0399430 | MtrunA17_Chr5g0431001 | 31.988 | 322 | 207 | 6 | 195 | 506 | 67 | 386 | 2.96e-43 | 161 |
| Msa0399430 | MtrunA17_Chr2g0296781 | 29.830 | 352 | 236 | 5 | 193 | 540 | 1 | 345 | 6.08e-42 | 160 |
| Msa0399430 | MtrunA17_Chr2g0291591 | 29.679 | 374 | 241 | 9 | 176 | 540 | 52 | 412 | 3.63e-40 | 153 |
| Msa0399430 | MtrunA17_Chr1g0164591 | 32.601 | 273 | 170 | 4 | 275 | 542 | 8 | 271 | 5.62e-40 | 147 |
| Msa0399430 | MtrunA17_Chr2g0276841 | 30.030 | 333 | 194 | 7 | 195 | 506 | 76 | 390 | 7.01e-39 | 151 |
| Msa0399430 | MtrunA17_Chr6g0477261 | 32.287 | 223 | 147 | 1 | 322 | 540 | 12 | 234 | 4.91e-36 | 142 |
| Msa0399430 | MtrunA17_Chr7g0258861 | 31.690 | 284 | 190 | 3 | 193 | 474 | 14 | 295 | 6.72e-36 | 136 |
| Msa0399430 | MtrunA17_Chr2g0287061 | 27.978 | 361 | 196 | 10 | 194 | 540 | 188 | 498 | 2.37e-35 | 141 |
| Msa0399430 | MtrunA17_Chr2g0290391 | 26.829 | 369 | 247 | 6 | 193 | 543 | 55 | 418 | 4.12e-33 | 134 |
| Msa0399430 | MtrunA17_Chr2g0291581 | 28.212 | 358 | 226 | 9 | 193 | 541 | 75 | 410 | 4.81e-33 | 134 |
| Msa0399430 | MtrunA17_Chr2g0294841 | 29.144 | 374 | 240 | 10 | 151 | 506 | 2 | 368 | 2.08e-32 | 132 |
| Msa0399430 | MtrunA17_Chr1g0196541 | 25.344 | 363 | 240 | 7 | 193 | 541 | 1 | 346 | 6.48e-29 | 121 |
| Msa0399430 | MtrunA17_Chr5g0448511 | 37.162 | 148 | 88 | 2 | 398 | 540 | 45 | 192 | 1.35e-28 | 119 |
| Msa0399430 | MtrunA17_Chr5g0440451 | 26.822 | 343 | 201 | 11 | 185 | 501 | 39 | 357 | 1.99e-28 | 120 |
| Msa0399430 | MtrunA17_Chr3g0118611 | 30.387 | 181 | 121 | 3 | 365 | 540 | 118 | 298 | 8.17e-26 | 112 |
| Msa0399430 | MtrunA17_Chr8g0389811 | 36.957 | 138 | 83 | 2 | 157 | 290 | 48 | 185 | 4.08e-21 | 91.7 |
| Msa0399430 | MtrunA17_Chr1g0171741 | 30.901 | 233 | 140 | 8 | 100 | 319 | 38 | 262 | 4.28e-18 | 84.3 |
| Msa0399430 | MtrunA17_Chr8g0340801 | 34.862 | 109 | 69 | 1 | 300 | 408 | 1 | 107 | 5.73e-15 | 71.2 |
| Msa0399430 | MtrunA17_Chr6g0473421 | 40.000 | 80 | 48 | 0 | 185 | 264 | 51 | 130 | 1.96e-12 | 65.1 |
| Msa0399430 | MtrunA17_Chr2g0329361 | 39.091 | 110 | 65 | 2 | 183 | 291 | 55 | 163 | 2.78e-12 | 67.0 |
| Msa0399430 | MtrunA17_Chr6g0451441 | 27.612 | 268 | 168 | 8 | 97 | 363 | 11 | 253 | 7.58e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399430 | AT4G38180.1 | 33.803 | 355 | 226 | 5 | 193 | 540 | 77 | 429 | 1.75e-56 | 202 |
| Msa0399430 | AT4G15090.1 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399430 | AT4G15090.5 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399430 | AT4G15090.3 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399430 | AT4G15090.2 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399430 | AT4G15090.4 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399430 | AT3G22170.2 | 29.302 | 430 | 259 | 8 | 132 | 540 | 9 | 414 | 5.53e-49 | 182 |
| Msa0399430 | AT3G22170.1 | 29.302 | 430 | 259 | 8 | 132 | 540 | 9 | 414 | 5.53e-49 | 182 |
| Msa0399430 | AT1G76320.2 | 29.775 | 356 | 228 | 7 | 193 | 540 | 1 | 342 | 5.37e-41 | 158 |
| Msa0399430 | AT1G76320.1 | 29.775 | 356 | 228 | 7 | 193 | 540 | 1 | 342 | 5.92e-41 | 157 |
| Msa0399430 | AT1G76320.4 | 29.775 | 356 | 228 | 7 | 193 | 540 | 1 | 342 | 5.92e-41 | 157 |
| Msa0399430 | AT1G76320.3 | 29.775 | 356 | 228 | 7 | 193 | 540 | 1 | 342 | 9.16e-41 | 157 |
| Msa0399430 | AT1G10240.2 | 30.395 | 329 | 194 | 6 | 195 | 504 | 54 | 366 | 5.10e-39 | 152 |
| Msa0399430 | AT1G10240.1 | 30.395 | 329 | 194 | 6 | 195 | 504 | 54 | 366 | 5.10e-39 | 152 |
| Msa0399430 | AT3G06250.2 | 28.090 | 356 | 205 | 10 | 193 | 542 | 194 | 504 | 1.89e-34 | 139 |
| Msa0399430 | AT3G06250.1 | 28.090 | 356 | 205 | 10 | 193 | 542 | 194 | 504 | 1.89e-34 | 139 |
| Msa0399430 | AT3G06250.3 | 28.090 | 356 | 205 | 10 | 193 | 542 | 194 | 504 | 1.89e-34 | 139 |
| Msa0399430 | AT1G80010.1 | 28.219 | 365 | 232 | 10 | 193 | 540 | 99 | 450 | 1.90e-31 | 129 |
| Msa0399430 | AT1G52520.1 | 28.142 | 366 | 218 | 9 | 193 | 541 | 89 | 426 | 2.18e-31 | 129 |
| Msa0399430 | AT5G18960.2 | 27.095 | 358 | 209 | 11 | 193 | 542 | 215 | 528 | 7.01e-31 | 128 |
| Msa0399430 | AT5G18960.1 | 27.095 | 358 | 209 | 11 | 193 | 542 | 215 | 528 | 7.01e-31 | 128 |
| Msa0399430 | AT4G19990.3 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 9.02e-31 | 127 |
| Msa0399430 | AT4G19990.4 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 9.02e-31 | 127 |
| Msa0399430 | AT4G19990.5 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 9.08e-31 | 127 |
| Msa0399430 | AT4G19990.7 | 25.886 | 367 | 213 | 7 | 194 | 540 | 40 | 367 | 9.53e-31 | 127 |
| Msa0399430 | AT4G19990.6 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 1.06e-30 | 127 |
| Msa0399430 | AT4G19990.2 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 1.06e-30 | 127 |
| Msa0399430 | AT5G28530.1 | 26.486 | 370 | 240 | 9 | 195 | 540 | 61 | 422 | 5.71e-30 | 125 |
| Msa0399430 | AT5G28530.3 | 26.486 | 370 | 240 | 9 | 195 | 540 | 61 | 422 | 6.12e-30 | 125 |
| Msa0399430 | AT5G28530.2 | 26.486 | 370 | 240 | 9 | 195 | 540 | 61 | 422 | 6.12e-30 | 125 |
| Msa0399430 | AT2G27110.2 | 25.926 | 405 | 244 | 12 | 149 | 542 | 19 | 378 | 8.21e-30 | 125 |
| Msa0399430 | AT2G27110.1 | 25.926 | 405 | 244 | 12 | 149 | 542 | 19 | 378 | 8.21e-30 | 125 |
| Msa0399430 | AT2G27110.3 | 30.601 | 183 | 122 | 3 | 365 | 542 | 51 | 233 | 1.80e-25 | 111 |
| Msa0399430 | AT4G19990.1 | 26.599 | 297 | 171 | 5 | 252 | 540 | 39 | 296 | 6.12e-25 | 109 |
| Msa0399430 | AT2G32250.8 | 30.968 | 155 | 102 | 1 | 392 | 541 | 155 | 309 | 4.22e-23 | 104 |
| Msa0399430 | AT2G32250.2 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.31e-23 | 104 |
| Msa0399430 | AT2G32250.4 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.31e-23 | 104 |
| Msa0399430 | AT2G32250.6 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.44e-23 | 104 |
| Msa0399430 | AT2G32250.1 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.44e-23 | 104 |
| Msa0399430 | AT2G32250.3 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.44e-23 | 104 |
| Msa0399430 | AT2G32250.7 | 30.968 | 155 | 102 | 1 | 392 | 541 | 155 | 309 | 4.46e-23 | 103 |
| Msa0399430 | AT2G32250.5 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 5.35e-23 | 103 |
| Msa0399430 | AT4G38170.1 | 31.915 | 141 | 87 | 4 | 361 | 498 | 13 | 147 | 1.09e-17 | 86.7 |
| Msa0399430 | AT5G28530.4 | 26.087 | 230 | 157 | 6 | 195 | 418 | 61 | 283 | 1.80e-13 | 73.6 |
| Msa0399430 | AT5G28530.5 | 26.087 | 230 | 157 | 6 | 195 | 418 | 61 | 283 | 1.90e-13 | 73.6 |
| Msa0399430 | AT3G07500.1 | 34.839 | 155 | 86 | 6 | 162 | 313 | 8 | 150 | 4.96e-12 | 65.9 |
Find 101 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGACTTTACGGATTT+TGG | 0.057115 | 3_2:-22925240 | Msa0399430:CDS |
| AGGATGAATTTGAAGAGTTT+TGG | 0.187483 | 3_2:-22923655 | Msa0399430:CDS |
| CACTCACAAACAGTTATATT+TGG | 0.225628 | 3_2:-22923935 | Msa0399430:CDS |
| GACGTTTGAAATGTCTATTT+TGG | 0.226086 | 3_2:-22924075 | Msa0399430:CDS |
| AATAAGAACTTGTCATATAA+TGG | 0.247315 | 3_2:-22924287 | Msa0399430:CDS |
| TGTTCACTACAGACCCAAAA+AGG | 0.266221 | 3_2:-22924446 | Msa0399430:CDS |
| CCATCTGTTACAACTGCTTT+TGG | 0.274383 | 3_2:+22923830 | None:intergenic |
| TGCATTTACACCCTATTTAT+CGG | 0.291021 | 3_2:-22924360 | Msa0399430:CDS |
| CATTAACTGCTGAAGGAATA+AGG | 0.318241 | 3_2:-22924702 | Msa0399430:CDS |
| TGCTGAAGGAATAAGGAAAA+TGG | 0.318497 | 3_2:-22924695 | Msa0399430:CDS |
| AAACAACAACAATGACTTTA+CGG | 0.325210 | 3_2:-22925247 | Msa0399430:CDS |
| AGTGATTATGGTGGTTGTTC+TGG | 0.332652 | 3_2:-22925003 | Msa0399430:CDS |
| TTCTATGAGGGAGGCGATAA+AGG | 0.353001 | 3_2:-22923801 | Msa0399430:CDS |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.373380 | 3_2:+22924386 | None:intergenic |
| GGAGACAATGAAAGTGATTA+TGG | 0.394825 | 3_2:-22925015 | Msa0399430:CDS |
| ATAAGAACTTGTCATATAAT+GGG | 0.403187 | 3_2:-22924286 | Msa0399430:CDS |
| GCTCAGAAGGGTGGATATCC+TGG | 0.409450 | 3_2:-22924253 | Msa0399430:CDS |
| AGATCAGATTATTTCTGCTT+CGG | 0.410985 | 3_2:-22924037 | Msa0399430:CDS |
| GGTACACCAGAACATGATTA+CGG | 0.421572 | 3_2:-22925219 | Msa0399430:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | 3_2:-22924979 | Msa0399430:CDS |
| TATAAGTATGGTAAGTGTAA+AGG | 0.429361 | 3_2:-22924637 | Msa0399430:CDS |
| CATAGACAATGACGCGTACT+TGG | 0.430745 | 3_2:+22923770 | None:intergenic |
| GATATTAGACGCAATGTTAA+CGG | 0.432015 | 3_2:-22924595 | Msa0399430:CDS |
| AGCATTTATCAAGGTTAGAT+AGG | 0.434364 | 3_2:-22924519 | Msa0399430:CDS |
| GTAGAACCGTAATCATGTTC+TGG | 0.434784 | 3_2:+22925213 | None:intergenic |
| GAGAGATGAAGCATTTATCA+AGG | 0.455085 | 3_2:-22924528 | Msa0399430:CDS |
| AAGGGTGGATATCCTGGTGT+TGG | 0.458467 | 3_2:-22924247 | Msa0399430:CDS |
| ACAAAATCACCAACGGATAG+TGG | 0.461754 | 3_2:+22923972 | None:intergenic |
| AAAACATATCCGATCATTGT+TGG | 0.461905 | 3_2:-22925171 | Msa0399430:CDS |
| GGGATACATGGTGGCTCAGA+AGG | 0.464555 | 3_2:-22924266 | Msa0399430:CDS |
| TAGTGAACACGGAGCCTAGC+TGG | 0.466097 | 3_2:+22924460 | None:intergenic |
| GATGAGCGATATGATGAAAC+TGG | 0.468588 | 3_2:-22925036 | Msa0399430:CDS |
| GTAGATAAAGCACAAATTGA+TGG | 0.469140 | 3_2:-22924325 | Msa0399430:CDS |
| AGGGTGGATATCCTGGTGTT+GGG | 0.476260 | 3_2:-22924246 | Msa0399430:CDS |
| TGATTACGGTTCTACGGATG+TGG | 0.481654 | 3_2:-22925205 | Msa0399430:CDS |
| CGCGTCATTGTCTATGTGGT+TGG | 0.486238 | 3_2:-22923763 | Msa0399430:CDS |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | 3_2:-22924988 | Msa0399430:CDS |
| AAACATATCCGATCATTGTT+GGG | 0.492509 | 3_2:-22925170 | Msa0399430:CDS |
| TGTAGTTGTTGGTGAGGAAA+TGG | 0.504666 | 3_2:-22924737 | Msa0399430:CDS |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | 3_2:-22924748 | Msa0399430:CDS |
| AAGAATACTCAAGGGAATAC+AGG | 0.512005 | 3_2:-22925060 | Msa0399430:CDS |
| AGTGGCAGAATATTCACAAA+AGG | 0.514210 | 3_2:+22924105 | None:intergenic |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 3_2:-22924709 | Msa0399430:CDS |
| CAGATGGTGATGGTTCTATG+AGG | 0.523380 | 3_2:-22923814 | Msa0399430:CDS |
| CCGATCATTGTTGGGAGTGG+TGG | 0.525336 | 3_2:-22925162 | Msa0399430:CDS |
| AAACAATAGAAACTTATATG+TGG | 0.527967 | 3_2:-22923892 | Msa0399430:CDS |
| AGAACATGATTACGGTTCTA+CGG | 0.545109 | 3_2:-22925211 | Msa0399430:CDS |
| CCACCACTCCCAACAATGAT+CGG | 0.545431 | 3_2:+22925162 | None:intergenic |
| ATTTGGTGCTGCATTAGTGA+TGG | 0.548010 | 3_2:-22923918 | Msa0399430:CDS |
| CAGTATGTATGTAACAAGCA+TGG | 0.552224 | 3_2:-22924556 | Msa0399430:CDS |
| ATGTGTGCTGTTATTAAGGA+TGG | 0.553864 | 3_2:-22924184 | Msa0399430:CDS |
| TTGTCATATAATGGGATACA+TGG | 0.555297 | 3_2:-22924278 | Msa0399430:CDS |
| TGTAAATGCACAACATTGGT+TGG | 0.560698 | 3_2:+22924373 | None:intergenic |
| CAAATATAACTGTTTGTGAG+TGG | 0.565481 | 3_2:+22923936 | None:intergenic |
| GGTGATAAAGGTGAAGATGA+TGG | 0.566671 | 3_2:-22924967 | Msa0399430:CDS |
| TTCTTAGTGAACCCAACACC+AGG | 0.567834 | 3_2:+22924235 | None:intergenic |
| TTGTTGGTGAGGAAATGGTA+AGG | 0.572827 | 3_2:-22924732 | Msa0399430:CDS |
| GCATCTGAACAAGAATGCTA+TGG | 0.573073 | 3_2:-22923741 | Msa0399430:CDS |
| TACATGGTGGCTCAGAAGGG+TGG | 0.573659 | 3_2:-22924262 | Msa0399430:CDS |
| TATCCGATCATTGTTGGGAG+TGG | 0.573961 | 3_2:-22925165 | Msa0399430:CDS |
| TTATTTCTGCTTCGGCGATG+TGG | 0.577693 | 3_2:-22924029 | Msa0399430:CDS |
| AACAATAGAAACTTATATGT+GGG | 0.579140 | 3_2:-22923891 | Msa0399430:CDS |
| GATGAAAGTCAAGGTGATGA+AGG | 0.579998 | 3_2:-22924934 | Msa0399430:CDS |
| AGTATGTATGTAACAAGCAT+GGG | 0.587066 | 3_2:-22924555 | Msa0399430:CDS |
| CCAAAAGCAGTTGTAACAGA+TGG | 0.588696 | 3_2:-22923830 | Msa0399430:CDS |
| GATGAAGGTGAACGTGATGA+AGG | 0.589312 | 3_2:-22924883 | Msa0399430:CDS |
| GAAGGTGAACGTGATGAAGG+TGG | 0.592672 | 3_2:-22924880 | Msa0399430:CDS |
| GAATATTCTGCCACTGATGA+CGG | 0.599778 | 3_2:-22924097 | Msa0399430:CDS |
| GAATATTCACAAAAGGAATG+TGG | 0.603006 | 3_2:+22924112 | None:intergenic |
| GTGATAAAGGTGAAGATGAT+GGG | 0.603978 | 3_2:-22924966 | Msa0399430:CDS |
| GATGAACGTGAAGGTGATGA+AGG | 0.607198 | 3_2:-22924898 | Msa0399430:CDS |
| AGGGTGTAAATGCACAACAT+TGG | 0.610800 | 3_2:+22924369 | None:intergenic |
| GGATACATGGTGGCTCAGAA+GGG | 0.612576 | 3_2:-22924265 | Msa0399430:CDS |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | 3_2:-22924787 | Msa0399430:CDS |
| GCAGTTGTAACAGATGGTGA+TGG | 0.618869 | 3_2:-22923824 | Msa0399430:CDS |
| AGTACGCGTCATTGTCTATG+TGG | 0.628317 | 3_2:-22923767 | Msa0399430:CDS |
| TTTCAAACGTCCGTCATCAG+TGG | 0.632560 | 3_2:+22924087 | None:intergenic |
| TGCACAACATTGGTTGGAGT+AGG | 0.634569 | 3_2:+22924379 | None:intergenic |
| AGATGGTGATGGTTCTATGA+GGG | 0.637450 | 3_2:-22923813 | Msa0399430:CDS |
| GAACAAATACCACTATCCGT+TGG | 0.644673 | 3_2:-22923981 | Msa0399430:CDS |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | 3_2:-22924474 | Msa0399430:CDS |
| GGTGAACGTGATGAAGGTGG+AGG | 0.647603 | 3_2:-22924877 | Msa0399430:CDS |
| TGGTGATGGTTCTATGAGGG+AGG | 0.649015 | 3_2:-22923810 | Msa0399430:CDS |
| GGTGATGAAGGTGAAAGTGA+AGG | 0.649041 | 3_2:-22924922 | Msa0399430:CDS |
| TATGAGGGAGGCGATAAAGG+CGG | 0.662119 | 3_2:-22923798 | Msa0399430:CDS |
| TGATGATGTAGTTGTTGGTG+AGG | 0.665725 | 3_2:-22924743 | Msa0399430:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 3_2:-22924796 | Msa0399430:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 3_2:-22924841 | Msa0399430:CDS |
| TCATATAATGGGATACATGG+TGG | 0.669224 | 3_2:-22924275 | Msa0399430:CDS |
| CAGCCAGACAAAATCACCAA+CGG | 0.675472 | 3_2:+22923965 | None:intergenic |
| GATGATGATGATGTGAGTCA+TGG | 0.679569 | 3_2:-22925093 | Msa0399430:CDS |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | 3_2:-22924579 | Msa0399430:CDS |
| GACAATGAAAGTGATTATGG+TGG | 0.688706 | 3_2:-22925012 | Msa0399430:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.694719 | 3_2:-22924817 | Msa0399430:CDS |
| GGTGGAGGTGATGAAAGTGA+AGG | 0.700815 | 3_2:-22924862 | Msa0399430:CDS |
| ATTGATGGTCTTCAGTCACA+CGG | 0.717148 | 3_2:-22924310 | Msa0399430:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3_2:-22924802 | Msa0399430:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3_2:-22924847 | Msa0399430:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.727165 | 3_2:-22924943 | Msa0399430:CDS |
| AGTGAAGGCGATGAACGTGA+AGG | 0.732999 | 3_2:-22924907 | Msa0399430:CDS |
| TATTTATCGGAAAATATACG+AGG | 0.773295 | 3_2:-22924347 | Msa0399430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATTTTTATTATAAGTA+TGG | - | chr3_2:22924246-22924265 | Msa0399430:CDS | 10.0% |
| !!! | TACAATTTTTATTATAAGTA+TGG | - | chr3_2:22924246-22924265 | Msa0399430:CDS | 10.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr3_2:22924608-22924627 | Msa0399430:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr3_2:22924609-22924628 | Msa0399430:CDS | 20.0% |
| !! | AAACAATAGAAACTTATATG+TGG | - | chr3_2:22925003-22925022 | Msa0399430:CDS | 20.0% |
| !! | AACAATAGAAACTTATATGT+GGG | - | chr3_2:22925004-22925023 | Msa0399430:CDS | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr3_2:22924608-22924627 | Msa0399430:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr3_2:22924609-22924628 | Msa0399430:CDS | 20.0% |
| !! | AAACAATAGAAACTTATATG+TGG | - | chr3_2:22925003-22925022 | Msa0399430:CDS | 20.0% |
| !! | AACAATAGAAACTTATATGT+GGG | - | chr3_2:22925004-22925023 | Msa0399430:CDS | 20.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr3_2:22923648-22923667 | Msa0399430:CDS | 25.0% |
| !! | AATTTTACGAAGAATACTCA+AGG | - | chr3_2:22923826-22923845 | Msa0399430:CDS | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+GGG | - | chr3_2:22923827-22923846 | Msa0399430:CDS | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr3_2:22924186-22924205 | Msa0399430:CDS | 25.0% |
| ! | TATAAGTATGGTAAGTGTAA+AGG | - | chr3_2:22924258-22924277 | Msa0399430:CDS | 25.0% |
| !! | CGTATATTTTCCGATAAATA+GGG | + | chr3_2:22924548-22924567 | None:intergenic | 25.0% |
| !! | TCGTATATTTTCCGATAAAT+AGG | + | chr3_2:22924549-22924568 | None:intergenic | 25.0% |
| ! | TATTTATCGGAAAATATACG+AGG | - | chr3_2:22924548-22924567 | Msa0399430:CDS | 25.0% |
| !! | AAAAATGTGTGCTGTTATTA+AGG | - | chr3_2:22924707-22924726 | Msa0399430:CDS | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr3_2:22924821-22924840 | Msa0399430:CDS | 25.0% |
| !!! | ACTAGTTTTCTAGATTGTAT+GGG | - | chr3_2:22925032-22925051 | Msa0399430:CDS | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr3_2:22925217-22925236 | Msa0399430:CDS | 25.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr3_2:22923648-22923667 | Msa0399430:CDS | 25.0% |
| !! | AATTTTACGAAGAATACTCA+AGG | - | chr3_2:22923826-22923845 | Msa0399430:CDS | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+GGG | - | chr3_2:22923827-22923846 | Msa0399430:CDS | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr3_2:22924186-22924205 | Msa0399430:CDS | 25.0% |
| ! | TATAAGTATGGTAAGTGTAA+AGG | - | chr3_2:22924258-22924277 | Msa0399430:CDS | 25.0% |
| !! | CGTATATTTTCCGATAAATA+GGG | + | chr3_2:22924548-22924567 | None:intergenic | 25.0% |
| !! | TCGTATATTTTCCGATAAAT+AGG | + | chr3_2:22924549-22924568 | None:intergenic | 25.0% |
| ! | TATTTATCGGAAAATATACG+AGG | - | chr3_2:22924548-22924567 | Msa0399430:CDS | 25.0% |
| !! | AAAAATGTGTGCTGTTATTA+AGG | - | chr3_2:22924707-22924726 | Msa0399430:CDS | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr3_2:22924821-22924840 | Msa0399430:CDS | 25.0% |
| !!! | ACTAGTTTTCTAGATTGTAT+GGG | - | chr3_2:22925032-22925051 | Msa0399430:CDS | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr3_2:22925217-22925236 | Msa0399430:CDS | 25.0% |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr3_2:22923655-22923674 | Msa0399430:CDS | 30.0% |
| AAAACATATCCGATCATTGT+TGG | - | chr3_2:22923724-22923743 | Msa0399430:CDS | 30.0% | |
| AAACATATCCGATCATTGTT+GGG | - | chr3_2:22923725-22923744 | Msa0399430:CDS | 30.0% | |
| GATATTAGACGCAATGTTAA+CGG | - | chr3_2:22924300-22924319 | Msa0399430:CDS | 30.0% | |
| AGTATGTATGTAACAAGCAT+GGG | - | chr3_2:22924340-22924359 | Msa0399430:CDS | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | - | chr3_2:22924376-22924395 | Msa0399430:CDS | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr3_2:22924465-22924484 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr3_2:22924479-22924498 | Msa0399430:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr3_2:22924480-22924499 | Msa0399430:CDS | 30.0% |
| TGCATTTACACCCTATTTAT+CGG | - | chr3_2:22924535-22924554 | Msa0399430:CDS | 30.0% | |
| GTAGATAAAGCACAAATTGA+TGG | - | chr3_2:22924570-22924589 | Msa0399430:CDS | 30.0% | |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr3_2:22924617-22924636 | Msa0399430:CDS | 30.0% |
| GAATATTCACAAAAGGAATG+TGG | + | chr3_2:22924786-22924805 | None:intergenic | 30.0% | |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr3_2:22924820-22924839 | Msa0399430:CDS | 30.0% |
| !! | AAATGTCTATTTTGGGAAGA+TGG | - | chr3_2:22924828-22924847 | Msa0399430:CDS | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+CGG | - | chr3_2:22924858-22924877 | Msa0399430:CDS | 30.0% |
| CAAATATAACTGTTTGTGAG+TGG | + | chr3_2:22924962-22924981 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | - | chr3_2:22924960-22924979 | Msa0399430:CDS | 30.0% | |
| !!! | GACTAGTTTTCTAGATTGTA+TGG | - | chr3_2:22925031-22925050 | Msa0399430:CDS | 30.0% |
| !!! | TGTCAAGAATTCAGCTTTTT+TGG | - | chr3_2:22925181-22925200 | Msa0399430:CDS | 30.0% |
| !!! | AAGAATTCAGCTTTTTTGGA+AGG | - | chr3_2:22925185-22925204 | Msa0399430:CDS | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | - | chr3_2:22925220-22925239 | Msa0399430:CDS | 30.0% |
| ! | AGGATGAATTTGAAGAGTTT+TGG | - | chr3_2:22925240-22925259 | Msa0399430:CDS | 30.0% |
| ! | GGATGAATTTGAAGAGTTTT+GGG | - | chr3_2:22925241-22925260 | Msa0399430:CDS | 30.0% |
| ! | GATGAATTTGAAGAGTTTTG+GGG | - | chr3_2:22925242-22925261 | Msa0399430:CDS | 30.0% |
| !! | ATGAATTTGAAGAGTTTTGG+GGG | - | chr3_2:22925243-22925262 | Msa0399430:CDS | 30.0% |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr3_2:22923655-22923674 | Msa0399430:CDS | 30.0% |
| AAAACATATCCGATCATTGT+TGG | - | chr3_2:22923724-22923743 | Msa0399430:CDS | 30.0% | |
| AAACATATCCGATCATTGTT+GGG | - | chr3_2:22923725-22923744 | Msa0399430:CDS | 30.0% | |
| GATATTAGACGCAATGTTAA+CGG | - | chr3_2:22924300-22924319 | Msa0399430:CDS | 30.0% | |
| AGTATGTATGTAACAAGCAT+GGG | - | chr3_2:22924340-22924359 | Msa0399430:CDS | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | - | chr3_2:22924376-22924395 | Msa0399430:CDS | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr3_2:22924465-22924484 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr3_2:22924479-22924498 | Msa0399430:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr3_2:22924480-22924499 | Msa0399430:CDS | 30.0% |
| TGCATTTACACCCTATTTAT+CGG | - | chr3_2:22924535-22924554 | Msa0399430:CDS | 30.0% | |
| GTAGATAAAGCACAAATTGA+TGG | - | chr3_2:22924570-22924589 | Msa0399430:CDS | 30.0% | |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr3_2:22924617-22924636 | Msa0399430:CDS | 30.0% |
| GAATATTCACAAAAGGAATG+TGG | + | chr3_2:22924786-22924805 | None:intergenic | 30.0% | |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr3_2:22924820-22924839 | Msa0399430:CDS | 30.0% |
| !! | AAATGTCTATTTTGGGAAGA+TGG | - | chr3_2:22924828-22924847 | Msa0399430:CDS | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+CGG | - | chr3_2:22924858-22924877 | Msa0399430:CDS | 30.0% |
| CAAATATAACTGTTTGTGAG+TGG | + | chr3_2:22924962-22924981 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | - | chr3_2:22924960-22924979 | Msa0399430:CDS | 30.0% | |
| !!! | GACTAGTTTTCTAGATTGTA+TGG | - | chr3_2:22925031-22925050 | Msa0399430:CDS | 30.0% |
| !!! | TGTCAAGAATTCAGCTTTTT+TGG | - | chr3_2:22925181-22925200 | Msa0399430:CDS | 30.0% |
| !!! | AAGAATTCAGCTTTTTTGGA+AGG | - | chr3_2:22925185-22925204 | Msa0399430:CDS | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | - | chr3_2:22925220-22925239 | Msa0399430:CDS | 30.0% |
| ! | AGGATGAATTTGAAGAGTTT+TGG | - | chr3_2:22925240-22925259 | Msa0399430:CDS | 30.0% |
| ! | GGATGAATTTGAAGAGTTTT+GGG | - | chr3_2:22925241-22925260 | Msa0399430:CDS | 30.0% |
| ! | GATGAATTTGAAGAGTTTTG+GGG | - | chr3_2:22925242-22925261 | Msa0399430:CDS | 30.0% |
| !! | ATGAATTTGAAGAGTTTTGG+GGG | - | chr3_2:22925243-22925262 | Msa0399430:CDS | 30.0% |
| AGAACATGATTACGGTTCTA+CGG | - | chr3_2:22923684-22923703 | Msa0399430:CDS | 35.0% | |
| AAGAATACTCAAGGGAATAC+AGG | - | chr3_2:22923835-22923854 | Msa0399430:CDS | 35.0% | |
| GGAGACAATGAAAGTGATTA+TGG | - | chr3_2:22923880-22923899 | Msa0399430:CDS | 35.0% | |
| GACAATGAAAGTGATTATGG+TGG | - | chr3_2:22923883-22923902 | Msa0399430:CDS | 35.0% | |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr3_2:22923916-22923935 | Msa0399430:CDS | 35.0% |
| GTGATAAAGGTGAAGATGAT+GGG | - | chr3_2:22923929-22923948 | Msa0399430:CDS | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr3_2:22923952-22923971 | Msa0399430:CDS | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr3_2:22924078-22924097 | Msa0399430:CDS | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | chr3_2:22924147-22924166 | Msa0399430:CDS | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | chr3_2:22924193-22924212 | Msa0399430:CDS | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr3_2:22924200-22924219 | Msa0399430:CDS | 35.0% | |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr3_2:22924271-22924290 | Msa0399430:CDS | 35.0% |
| TTAACGGTGAGATTGTAATG+AGG | - | chr3_2:22924316-22924335 | Msa0399430:CDS | 35.0% | |
| CAGTATGTATGTAACAAGCA+TGG | - | chr3_2:22924339-22924358 | Msa0399430:CDS | 35.0% | |
| ! | GAGAGATGAAGCATTTATCA+AGG | - | chr3_2:22924367-22924386 | Msa0399430:CDS | 35.0% |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr3_2:22924466-22924485 | None:intergenic | 35.0% |
| TGTAAATGCACAACATTGGT+TGG | + | chr3_2:22924525-22924544 | None:intergenic | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | chr3_2:22924620-22924639 | Msa0399430:CDS | 35.0% |
| ! | ATGTGTGCTGTTATTAAGGA+TGG | - | chr3_2:22924711-22924730 | Msa0399430:CDS | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | chr3_2:22924793-22924812 | None:intergenic | 35.0% | |
| AGAACATGATTACGGTTCTA+CGG | - | chr3_2:22923684-22923703 | Msa0399430:CDS | 35.0% | |
| AAGAATACTCAAGGGAATAC+AGG | - | chr3_2:22923835-22923854 | Msa0399430:CDS | 35.0% | |
| GGAGACAATGAAAGTGATTA+TGG | - | chr3_2:22923880-22923899 | Msa0399430:CDS | 35.0% | |
| GACAATGAAAGTGATTATGG+TGG | - | chr3_2:22923883-22923902 | Msa0399430:CDS | 35.0% | |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr3_2:22923916-22923935 | Msa0399430:CDS | 35.0% |
| GTGATAAAGGTGAAGATGAT+GGG | - | chr3_2:22923929-22923948 | Msa0399430:CDS | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr3_2:22923952-22923971 | Msa0399430:CDS | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr3_2:22924078-22924097 | Msa0399430:CDS | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | chr3_2:22924147-22924166 | Msa0399430:CDS | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | chr3_2:22924193-22924212 | Msa0399430:CDS | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr3_2:22924200-22924219 | Msa0399430:CDS | 35.0% | |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr3_2:22924271-22924290 | Msa0399430:CDS | 35.0% |
| TTAACGGTGAGATTGTAATG+AGG | - | chr3_2:22924316-22924335 | Msa0399430:CDS | 35.0% | |
| CAGTATGTATGTAACAAGCA+TGG | - | chr3_2:22924339-22924358 | Msa0399430:CDS | 35.0% | |
| ! | GAGAGATGAAGCATTTATCA+AGG | - | chr3_2:22924367-22924386 | Msa0399430:CDS | 35.0% |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr3_2:22924466-22924485 | None:intergenic | 35.0% |
| TGTAAATGCACAACATTGGT+TGG | + | chr3_2:22924525-22924544 | None:intergenic | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | chr3_2:22924620-22924639 | Msa0399430:CDS | 35.0% |
| ! | ATGTGTGCTGTTATTAAGGA+TGG | - | chr3_2:22924711-22924730 | Msa0399430:CDS | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | chr3_2:22924793-22924812 | None:intergenic | 35.0% | |
| GGTACACCAGAACATGATTA+CGG | - | chr3_2:22923676-22923695 | Msa0399430:CDS | 40.0% | |
| GTAGAACCGTAATCATGTTC+TGG | + | chr3_2:22923685-22923704 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr3_2:22923802-22923821 | Msa0399430:CDS | 40.0% |
| GATGAGCGATATGATGAAAC+TGG | - | chr3_2:22923859-22923878 | Msa0399430:CDS | 40.0% | |
| AGTGATTATGGTGGTTGTTC+TGG | - | chr3_2:22923892-22923911 | Msa0399430:CDS | 40.0% | |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr3_2:22923907-22923926 | Msa0399430:CDS | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr3_2:22923928-22923947 | Msa0399430:CDS | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | chr3_2:22923961-22923980 | Msa0399430:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3_2:22924048-22924067 | Msa0399430:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3_2:22924048-22924067 | Msa0399430:CDS | 40.0% | |
| ! | TGATGATGTAGTTGTTGGTG+AGG | - | chr3_2:22924152-22924171 | Msa0399430:CDS | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr3_2:22924158-22924177 | Msa0399430:CDS | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr3_2:22924163-22924182 | Msa0399430:CDS | 40.0% |
| !! | TTTTGGGTCTGTAGTGAACA+CGG | + | chr3_2:22924449-22924468 | None:intergenic | 40.0% |
| TGTTCACTACAGACCCAAAA+AGG | - | chr3_2:22924449-22924468 | Msa0399430:CDS | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | - | chr3_2:22924450-22924469 | Msa0399430:CDS | 40.0% | |
| AGGGTGTAAATGCACAACAT+TGG | + | chr3_2:22924529-22924548 | None:intergenic | 40.0% | |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | chr3_2:22924585-22924604 | Msa0399430:CDS | 40.0% |
| GAATATTCTGCCACTGATGA+CGG | - | chr3_2:22924798-22924817 | Msa0399430:CDS | 40.0% | |
| GAACAAATACCACTATCCGT+TGG | - | chr3_2:22924914-22924933 | Msa0399430:CDS | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | chr3_2:22924926-22924945 | None:intergenic | 40.0% | |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | - | chr3_2:22924927-22924946 | Msa0399430:CDS | 40.0% |
| !! | ATTTGGTGCTGCATTAGTGA+TGG | - | chr3_2:22924977-22924996 | Msa0399430:CDS | 40.0% |
| ! | CCATCTGTTACAACTGCTTT+TGG | + | chr3_2:22925068-22925087 | None:intergenic | 40.0% |
| CCAAAAGCAGTTGTAACAGA+TGG | - | chr3_2:22925065-22925084 | Msa0399430:CDS | 40.0% | |
| !! | AGATGGTGATGGTTCTATGA+GGG | - | chr3_2:22925082-22925101 | Msa0399430:CDS | 40.0% |
| GCATCTGAACAAGAATGCTA+TGG | - | chr3_2:22925154-22925173 | Msa0399430:CDS | 40.0% | |
| GGTACACCAGAACATGATTA+CGG | - | chr3_2:22923676-22923695 | Msa0399430:CDS | 40.0% | |
| GTAGAACCGTAATCATGTTC+TGG | + | chr3_2:22923685-22923704 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr3_2:22923802-22923821 | Msa0399430:CDS | 40.0% |
| GATGAGCGATATGATGAAAC+TGG | - | chr3_2:22923859-22923878 | Msa0399430:CDS | 40.0% | |
| AGTGATTATGGTGGTTGTTC+TGG | - | chr3_2:22923892-22923911 | Msa0399430:CDS | 40.0% | |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr3_2:22923907-22923926 | Msa0399430:CDS | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr3_2:22923928-22923947 | Msa0399430:CDS | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | chr3_2:22923961-22923980 | Msa0399430:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3_2:22924048-22924067 | Msa0399430:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3_2:22924048-22924067 | Msa0399430:CDS | 40.0% | |
| ! | TGATGATGTAGTTGTTGGTG+AGG | - | chr3_2:22924152-22924171 | Msa0399430:CDS | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr3_2:22924158-22924177 | Msa0399430:CDS | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr3_2:22924163-22924182 | Msa0399430:CDS | 40.0% |
| !! | TTTTGGGTCTGTAGTGAACA+CGG | + | chr3_2:22924449-22924468 | None:intergenic | 40.0% |
| TGTTCACTACAGACCCAAAA+AGG | - | chr3_2:22924449-22924468 | Msa0399430:CDS | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | - | chr3_2:22924450-22924469 | Msa0399430:CDS | 40.0% | |
| AGGGTGTAAATGCACAACAT+TGG | + | chr3_2:22924529-22924548 | None:intergenic | 40.0% | |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | chr3_2:22924585-22924604 | Msa0399430:CDS | 40.0% |
| GAATATTCTGCCACTGATGA+CGG | - | chr3_2:22924798-22924817 | Msa0399430:CDS | 40.0% | |
| GAACAAATACCACTATCCGT+TGG | - | chr3_2:22924914-22924933 | Msa0399430:CDS | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | chr3_2:22924926-22924945 | None:intergenic | 40.0% | |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | - | chr3_2:22924927-22924946 | Msa0399430:CDS | 40.0% |
| !! | ATTTGGTGCTGCATTAGTGA+TGG | - | chr3_2:22924977-22924996 | Msa0399430:CDS | 40.0% |
| ! | CCATCTGTTACAACTGCTTT+TGG | + | chr3_2:22925068-22925087 | None:intergenic | 40.0% |
| CCAAAAGCAGTTGTAACAGA+TGG | - | chr3_2:22925065-22925084 | Msa0399430:CDS | 40.0% | |
| !! | AGATGGTGATGGTTCTATGA+GGG | - | chr3_2:22925082-22925101 | Msa0399430:CDS | 40.0% |
| GCATCTGAACAAGAATGCTA+TGG | - | chr3_2:22925154-22925173 | Msa0399430:CDS | 40.0% | |
| TGATTACGGTTCTACGGATG+TGG | - | chr3_2:22923690-22923709 | Msa0399430:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | chr3_2:22923730-22923749 | Msa0399430:CDS | 45.0% | |
| GGTGATGAAGGTGAAAGTGA+AGG | - | chr3_2:22923973-22923992 | Msa0399430:CDS | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | - | chr3_2:22923997-22924016 | Msa0399430:CDS | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | - | chr3_2:22924012-22924031 | Msa0399430:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3_2:22924054-22924073 | Msa0399430:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3_2:22924054-22924073 | Msa0399430:CDS | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr3_2:22924063-22924082 | Msa0399430:CDS | 45.0% |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr3_2:22924512-22924531 | None:intergenic | 45.0% |
| ! | TGCACAACATTGGTTGGAGT+AGG | + | chr3_2:22924519-22924538 | None:intergenic | 45.0% |
| TTCTTAGTGAACCCAACACC+AGG | + | chr3_2:22924663-22924682 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | chr3_2:22924811-22924830 | None:intergenic | 45.0% | |
| !! | TTATTTCTGCTTCGGCGATG+TGG | - | chr3_2:22924866-22924885 | Msa0399430:CDS | 45.0% |
| CAGCCAGACAAAATCACCAA+CGG | + | chr3_2:22924933-22924952 | None:intergenic | 45.0% | |
| GCAGTTGTAACAGATGGTGA+TGG | - | chr3_2:22925071-22925090 | Msa0399430:CDS | 45.0% | |
| !! | CAGATGGTGATGGTTCTATG+AGG | - | chr3_2:22925081-22925100 | Msa0399430:CDS | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr3_2:22925094-22925113 | Msa0399430:CDS | 45.0% | |
| CATAGACAATGACGCGTACT+TGG | + | chr3_2:22925128-22925147 | None:intergenic | 45.0% | |
| AGTACGCGTCATTGTCTATG+TGG | - | chr3_2:22925128-22925147 | Msa0399430:CDS | 45.0% | |
| !!! | TTGAAGAGTTTTGGGGGACT+TGG | - | chr3_2:22925249-22925268 | Msa0399430:CDS | 45.0% |
| TGATTACGGTTCTACGGATG+TGG | - | chr3_2:22923690-22923709 | Msa0399430:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | chr3_2:22923730-22923749 | Msa0399430:CDS | 45.0% | |
| GGTGATGAAGGTGAAAGTGA+AGG | - | chr3_2:22923973-22923992 | Msa0399430:CDS | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | - | chr3_2:22923997-22924016 | Msa0399430:CDS | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | - | chr3_2:22924012-22924031 | Msa0399430:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3_2:22924054-22924073 | Msa0399430:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3_2:22924054-22924073 | Msa0399430:CDS | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr3_2:22924063-22924082 | Msa0399430:CDS | 45.0% |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr3_2:22924512-22924531 | None:intergenic | 45.0% |
| ! | TGCACAACATTGGTTGGAGT+AGG | + | chr3_2:22924519-22924538 | None:intergenic | 45.0% |
| TTCTTAGTGAACCCAACACC+AGG | + | chr3_2:22924663-22924682 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | chr3_2:22924811-22924830 | None:intergenic | 45.0% | |
| !! | TTATTTCTGCTTCGGCGATG+TGG | - | chr3_2:22924866-22924885 | Msa0399430:CDS | 45.0% |
| CAGCCAGACAAAATCACCAA+CGG | + | chr3_2:22924933-22924952 | None:intergenic | 45.0% | |
| GCAGTTGTAACAGATGGTGA+TGG | - | chr3_2:22925071-22925090 | Msa0399430:CDS | 45.0% | |
| !! | CAGATGGTGATGGTTCTATG+AGG | - | chr3_2:22925081-22925100 | Msa0399430:CDS | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr3_2:22925094-22925113 | Msa0399430:CDS | 45.0% | |
| CATAGACAATGACGCGTACT+TGG | + | chr3_2:22925128-22925147 | None:intergenic | 45.0% | |
| AGTACGCGTCATTGTCTATG+TGG | - | chr3_2:22925128-22925147 | Msa0399430:CDS | 45.0% | |
| !!! | TTGAAGAGTTTTGGGGGACT+TGG | - | chr3_2:22925249-22925268 | Msa0399430:CDS | 45.0% |
| CCACCACTCCCAACAATGAT+CGG | + | chr3_2:22923736-22923755 | None:intergenic | 50.0% | |
| AGTGAAGGCGATGAACGTGA+AGG | - | chr3_2:22923988-22924007 | Msa0399430:CDS | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr3_2:22924015-22924034 | Msa0399430:CDS | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr3_2:22924033-22924052 | Msa0399430:CDS | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr3_2:22924421-22924440 | Msa0399430:CDS | 50.0% |
| GGATACATGGTGGCTCAGAA+GGG | - | chr3_2:22924630-22924649 | Msa0399430:CDS | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | - | chr3_2:22924648-22924667 | Msa0399430:CDS | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | chr3_2:22924649-22924668 | Msa0399430:CDS | 50.0% | |
| !! | TGGTGATGGTTCTATGAGGG+AGG | - | chr3_2:22925085-22925104 | Msa0399430:CDS | 50.0% |
| TATGAGGGAGGCGATAAAGG+CGG | - | chr3_2:22925097-22925116 | Msa0399430:CDS | 50.0% | |
| CGCGTCATTGTCTATGTGGT+TGG | - | chr3_2:22925132-22925151 | Msa0399430:CDS | 50.0% | |
| CCACCACTCCCAACAATGAT+CGG | + | chr3_2:22923736-22923755 | None:intergenic | 50.0% | |
| AGTGAAGGCGATGAACGTGA+AGG | - | chr3_2:22923988-22924007 | Msa0399430:CDS | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr3_2:22924015-22924034 | Msa0399430:CDS | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr3_2:22924033-22924052 | Msa0399430:CDS | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr3_2:22924421-22924440 | Msa0399430:CDS | 50.0% |
| GGATACATGGTGGCTCAGAA+GGG | - | chr3_2:22924630-22924649 | Msa0399430:CDS | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | - | chr3_2:22924648-22924667 | Msa0399430:CDS | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | chr3_2:22924649-22924668 | Msa0399430:CDS | 50.0% | |
| !! | TGGTGATGGTTCTATGAGGG+AGG | - | chr3_2:22925085-22925104 | Msa0399430:CDS | 50.0% |
| TATGAGGGAGGCGATAAAGG+CGG | - | chr3_2:22925097-22925116 | Msa0399430:CDS | 50.0% | |
| CGCGTCATTGTCTATGTGGT+TGG | - | chr3_2:22925132-22925151 | Msa0399430:CDS | 50.0% | |
| CCGATCATTGTTGGGAGTGG+TGG | - | chr3_2:22923733-22923752 | Msa0399430:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr3_2:22924018-22924037 | Msa0399430:CDS | 55.0% | |
| TAGTGAACACGGAGCCTAGC+TGG | + | chr3_2:22924438-22924457 | None:intergenic | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr3_2:22924629-22924648 | Msa0399430:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr3_2:22924633-22924652 | Msa0399430:CDS | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr3_2:22924642-22924661 | Msa0399430:CDS | 55.0% | |
| CCGATCATTGTTGGGAGTGG+TGG | - | chr3_2:22923733-22923752 | Msa0399430:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr3_2:22924018-22924037 | Msa0399430:CDS | 55.0% | |
| TAGTGAACACGGAGCCTAGC+TGG | + | chr3_2:22924438-22924457 | None:intergenic | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr3_2:22924629-22924648 | Msa0399430:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr3_2:22924633-22924652 | Msa0399430:CDS | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr3_2:22924642-22924661 | Msa0399430:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 22923643 | 22925274 | 22923643 | ID=Msa0399430;Name=Msa0399430 |
| chr3_2 | mRNA | 22923643 | 22925274 | 22923643 | ID=Msa0399430-mRNA-1;Parent=Msa0399430;Name=Msa0399430-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|543 |
| chr3_2 | exon | 22923643 | 22925274 | 22923643 | ID=Msa0399430-mRNA-1:exon:4841;Parent=Msa0399430-mRNA-1 |
| chr3_2 | CDS | 22923643 | 22925274 | 22923643 | ID=Msa0399430-mRNA-1:cds;Parent=Msa0399430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
