Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399540 | PNX83264.1 | 71.809 | 376 | 102 | 2 | 170 | 541 | 90 | 465 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399540 | sp|Q9SZL8|FRS5_ARATH | 33.803 | 355 | 226 | 5 | 193 | 540 | 77 | 429 | 1.72e-55 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399540 | A0A2K3LXK3 | 71.809 | 376 | 102 | 2 | 170 | 541 | 90 | 465 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0399540 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399540 | MtrunA17_Chr2g0287651 | 70.270 | 370 | 110 | 0 | 172 | 541 | 58 | 427 | 0.0 | 575 |
| Msa0399540 | MtrunA17_Chr1g0203051 | 39.141 | 419 | 248 | 3 | 127 | 540 | 12 | 428 | 4.79e-97 | 308 |
| Msa0399540 | MtrunA17_Chr5g0448761 | 34.349 | 361 | 224 | 6 | 193 | 542 | 64 | 422 | 1.86e-57 | 205 |
| Msa0399540 | MtrunA17_Chr1g0202341 | 31.389 | 360 | 235 | 6 | 188 | 540 | 50 | 404 | 3.53e-52 | 189 |
| Msa0399540 | MtrunA17_Chr2g0324011 | 33.333 | 354 | 226 | 4 | 193 | 540 | 14 | 363 | 4.03e-52 | 187 |
| Msa0399540 | MtrunA17_Chr8g0363841 | 32.479 | 351 | 225 | 5 | 197 | 540 | 25 | 370 | 2.09e-50 | 184 |
| Msa0399540 | MtrunA17_Chr3g0082121 | 32.687 | 361 | 216 | 6 | 193 | 542 | 47 | 391 | 8.39e-50 | 182 |
| Msa0399540 | MtrunA17_Chr3g0080351 | 30.541 | 370 | 215 | 8 | 188 | 540 | 75 | 419 | 2.70e-49 | 182 |
| Msa0399540 | MtrunA17_Chr1g0207551 | 30.791 | 354 | 233 | 5 | 193 | 540 | 38 | 385 | 1.30e-48 | 180 |
| Msa0399540 | MtrunA17_Chr1g0203721 | 31.081 | 370 | 233 | 8 | 186 | 542 | 61 | 421 | 6.04e-47 | 176 |
| Msa0399540 | MtrunA17_Chr5g0441581 | 29.775 | 356 | 230 | 5 | 193 | 543 | 36 | 376 | 4.83e-46 | 171 |
| Msa0399540 | MtrunA17_Chr6g0458391 | 31.016 | 374 | 223 | 10 | 180 | 542 | 214 | 563 | 1.23e-45 | 171 |
| Msa0399540 | MtrunA17_Chr6g0458391 | 33.571 | 140 | 79 | 6 | 193 | 323 | 95 | 229 | 9.35e-13 | 71.2 |
| Msa0399540 | MtrunA17_Chr1g0198761 | 31.366 | 322 | 209 | 5 | 195 | 506 | 53 | 372 | 1.94e-45 | 171 |
| Msa0399540 | MtrunA17_Chr2g0329031 | 28.451 | 355 | 235 | 6 | 192 | 540 | 17 | 358 | 4.77e-44 | 166 |
| Msa0399540 | MtrunA17_Chr5g0431001 | 31.988 | 322 | 207 | 6 | 195 | 506 | 67 | 386 | 2.96e-43 | 161 |
| Msa0399540 | MtrunA17_Chr2g0296781 | 29.830 | 352 | 236 | 5 | 193 | 540 | 1 | 345 | 6.08e-42 | 160 |
| Msa0399540 | MtrunA17_Chr2g0291591 | 29.679 | 374 | 241 | 9 | 176 | 540 | 52 | 412 | 3.63e-40 | 153 |
| Msa0399540 | MtrunA17_Chr1g0164591 | 32.601 | 273 | 170 | 4 | 275 | 542 | 8 | 271 | 5.62e-40 | 147 |
| Msa0399540 | MtrunA17_Chr2g0276841 | 30.030 | 333 | 194 | 7 | 195 | 506 | 76 | 390 | 7.01e-39 | 151 |
| Msa0399540 | MtrunA17_Chr6g0477261 | 32.287 | 223 | 147 | 1 | 322 | 540 | 12 | 234 | 4.91e-36 | 142 |
| Msa0399540 | MtrunA17_Chr7g0258861 | 31.690 | 284 | 190 | 3 | 193 | 474 | 14 | 295 | 6.72e-36 | 136 |
| Msa0399540 | MtrunA17_Chr2g0287061 | 27.978 | 361 | 196 | 10 | 194 | 540 | 188 | 498 | 2.37e-35 | 141 |
| Msa0399540 | MtrunA17_Chr2g0290391 | 26.829 | 369 | 247 | 6 | 193 | 543 | 55 | 418 | 4.12e-33 | 134 |
| Msa0399540 | MtrunA17_Chr2g0291581 | 28.212 | 358 | 226 | 9 | 193 | 541 | 75 | 410 | 4.81e-33 | 134 |
| Msa0399540 | MtrunA17_Chr2g0294841 | 29.144 | 374 | 240 | 10 | 151 | 506 | 2 | 368 | 2.08e-32 | 132 |
| Msa0399540 | MtrunA17_Chr1g0196541 | 25.344 | 363 | 240 | 7 | 193 | 541 | 1 | 346 | 6.48e-29 | 121 |
| Msa0399540 | MtrunA17_Chr5g0448511 | 37.162 | 148 | 88 | 2 | 398 | 540 | 45 | 192 | 1.35e-28 | 119 |
| Msa0399540 | MtrunA17_Chr5g0440451 | 26.822 | 343 | 201 | 11 | 185 | 501 | 39 | 357 | 1.99e-28 | 120 |
| Msa0399540 | MtrunA17_Chr3g0118611 | 30.387 | 181 | 121 | 3 | 365 | 540 | 118 | 298 | 8.17e-26 | 112 |
| Msa0399540 | MtrunA17_Chr8g0389811 | 36.957 | 138 | 83 | 2 | 157 | 290 | 48 | 185 | 4.08e-21 | 91.7 |
| Msa0399540 | MtrunA17_Chr1g0171741 | 30.901 | 233 | 140 | 8 | 100 | 319 | 38 | 262 | 4.28e-18 | 84.3 |
| Msa0399540 | MtrunA17_Chr8g0340801 | 34.862 | 109 | 69 | 1 | 300 | 408 | 1 | 107 | 5.73e-15 | 71.2 |
| Msa0399540 | MtrunA17_Chr6g0473421 | 40.000 | 80 | 48 | 0 | 185 | 264 | 51 | 130 | 1.96e-12 | 65.1 |
| Msa0399540 | MtrunA17_Chr2g0329361 | 39.091 | 110 | 65 | 2 | 183 | 291 | 55 | 163 | 2.78e-12 | 67.0 |
| Msa0399540 | MtrunA17_Chr6g0451441 | 27.612 | 268 | 168 | 8 | 97 | 363 | 11 | 253 | 7.58e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399540 | AT4G38180.1 | 33.803 | 355 | 226 | 5 | 193 | 540 | 77 | 429 | 1.75e-56 | 202 |
| Msa0399540 | AT4G15090.1 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399540 | AT4G15090.5 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399540 | AT4G15090.3 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399540 | AT4G15090.2 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399540 | AT4G15090.4 | 31.549 | 355 | 232 | 6 | 193 | 540 | 55 | 405 | 4.35e-55 | 199 |
| Msa0399540 | AT3G22170.2 | 29.302 | 430 | 259 | 8 | 132 | 540 | 9 | 414 | 5.53e-49 | 182 |
| Msa0399540 | AT3G22170.1 | 29.302 | 430 | 259 | 8 | 132 | 540 | 9 | 414 | 5.53e-49 | 182 |
| Msa0399540 | AT1G76320.2 | 29.775 | 356 | 228 | 7 | 193 | 540 | 1 | 342 | 5.37e-41 | 158 |
| Msa0399540 | AT1G76320.1 | 29.775 | 356 | 228 | 7 | 193 | 540 | 1 | 342 | 5.92e-41 | 157 |
| Msa0399540 | AT1G76320.4 | 29.775 | 356 | 228 | 7 | 193 | 540 | 1 | 342 | 5.92e-41 | 157 |
| Msa0399540 | AT1G76320.3 | 29.775 | 356 | 228 | 7 | 193 | 540 | 1 | 342 | 9.16e-41 | 157 |
| Msa0399540 | AT1G10240.2 | 30.395 | 329 | 194 | 6 | 195 | 504 | 54 | 366 | 5.10e-39 | 152 |
| Msa0399540 | AT1G10240.1 | 30.395 | 329 | 194 | 6 | 195 | 504 | 54 | 366 | 5.10e-39 | 152 |
| Msa0399540 | AT3G06250.2 | 28.090 | 356 | 205 | 10 | 193 | 542 | 194 | 504 | 1.89e-34 | 139 |
| Msa0399540 | AT3G06250.1 | 28.090 | 356 | 205 | 10 | 193 | 542 | 194 | 504 | 1.89e-34 | 139 |
| Msa0399540 | AT3G06250.3 | 28.090 | 356 | 205 | 10 | 193 | 542 | 194 | 504 | 1.89e-34 | 139 |
| Msa0399540 | AT1G80010.1 | 28.219 | 365 | 232 | 10 | 193 | 540 | 99 | 450 | 1.90e-31 | 129 |
| Msa0399540 | AT1G52520.1 | 28.142 | 366 | 218 | 9 | 193 | 541 | 89 | 426 | 2.18e-31 | 129 |
| Msa0399540 | AT5G18960.2 | 27.095 | 358 | 209 | 11 | 193 | 542 | 215 | 528 | 7.01e-31 | 128 |
| Msa0399540 | AT5G18960.1 | 27.095 | 358 | 209 | 11 | 193 | 542 | 215 | 528 | 7.01e-31 | 128 |
| Msa0399540 | AT4G19990.3 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 9.02e-31 | 127 |
| Msa0399540 | AT4G19990.4 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 9.02e-31 | 127 |
| Msa0399540 | AT4G19990.5 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 9.08e-31 | 127 |
| Msa0399540 | AT4G19990.7 | 25.886 | 367 | 213 | 7 | 194 | 540 | 40 | 367 | 9.53e-31 | 127 |
| Msa0399540 | AT4G19990.6 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 1.06e-30 | 127 |
| Msa0399540 | AT4G19990.2 | 25.886 | 367 | 213 | 7 | 194 | 540 | 26 | 353 | 1.06e-30 | 127 |
| Msa0399540 | AT5G28530.1 | 26.486 | 370 | 240 | 9 | 195 | 540 | 61 | 422 | 5.71e-30 | 125 |
| Msa0399540 | AT5G28530.3 | 26.486 | 370 | 240 | 9 | 195 | 540 | 61 | 422 | 6.12e-30 | 125 |
| Msa0399540 | AT5G28530.2 | 26.486 | 370 | 240 | 9 | 195 | 540 | 61 | 422 | 6.12e-30 | 125 |
| Msa0399540 | AT2G27110.2 | 25.926 | 405 | 244 | 12 | 149 | 542 | 19 | 378 | 8.21e-30 | 125 |
| Msa0399540 | AT2G27110.1 | 25.926 | 405 | 244 | 12 | 149 | 542 | 19 | 378 | 8.21e-30 | 125 |
| Msa0399540 | AT2G27110.3 | 30.601 | 183 | 122 | 3 | 365 | 542 | 51 | 233 | 1.80e-25 | 111 |
| Msa0399540 | AT4G19990.1 | 26.599 | 297 | 171 | 5 | 252 | 540 | 39 | 296 | 6.12e-25 | 109 |
| Msa0399540 | AT2G32250.8 | 30.968 | 155 | 102 | 1 | 392 | 541 | 155 | 309 | 4.22e-23 | 104 |
| Msa0399540 | AT2G32250.2 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.31e-23 | 104 |
| Msa0399540 | AT2G32250.4 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.31e-23 | 104 |
| Msa0399540 | AT2G32250.6 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.44e-23 | 104 |
| Msa0399540 | AT2G32250.1 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.44e-23 | 104 |
| Msa0399540 | AT2G32250.3 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 4.44e-23 | 104 |
| Msa0399540 | AT2G32250.7 | 30.968 | 155 | 102 | 1 | 392 | 541 | 155 | 309 | 4.46e-23 | 103 |
| Msa0399540 | AT2G32250.5 | 30.968 | 155 | 102 | 1 | 392 | 541 | 196 | 350 | 5.35e-23 | 103 |
| Msa0399540 | AT4G38170.1 | 31.915 | 141 | 87 | 4 | 361 | 498 | 13 | 147 | 1.09e-17 | 86.7 |
| Msa0399540 | AT5G28530.4 | 26.087 | 230 | 157 | 6 | 195 | 418 | 61 | 283 | 1.80e-13 | 73.6 |
| Msa0399540 | AT5G28530.5 | 26.087 | 230 | 157 | 6 | 195 | 418 | 61 | 283 | 1.90e-13 | 73.6 |
| Msa0399540 | AT3G07500.1 | 34.839 | 155 | 86 | 6 | 162 | 313 | 8 | 150 | 4.96e-12 | 65.9 |
Find 101 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGACTTTACGGATTT+TGG | 0.057115 | 3_2:-23013862 | Msa0399540:CDS |
| AGGATGAATTTGAAGAGTTT+TGG | 0.187483 | 3_2:-23012277 | Msa0399540:CDS |
| CACTCACAAACAGTTATATT+TGG | 0.225628 | 3_2:-23012557 | Msa0399540:CDS |
| GACGTTTGAAATGTCTATTT+TGG | 0.226086 | 3_2:-23012697 | Msa0399540:CDS |
| AATAAGAACTTGTCATATAA+TGG | 0.247315 | 3_2:-23012909 | Msa0399540:CDS |
| TGTTCACTACAGACCCAAAA+AGG | 0.266221 | 3_2:-23013068 | Msa0399540:CDS |
| CCATCTGTTACAACTGCTTT+TGG | 0.274383 | 3_2:+23012452 | None:intergenic |
| TGCATTTACACCCTATTTAT+CGG | 0.291021 | 3_2:-23012982 | Msa0399540:CDS |
| CATTAACTGCTGAAGGAATA+AGG | 0.318241 | 3_2:-23013324 | Msa0399540:CDS |
| TGCTGAAGGAATAAGGAAAA+TGG | 0.318497 | 3_2:-23013317 | Msa0399540:CDS |
| AAACAACAACAATGACTTTA+CGG | 0.325210 | 3_2:-23013869 | Msa0399540:CDS |
| AGTGATTATGGTGGTTGTTC+TGG | 0.332652 | 3_2:-23013625 | Msa0399540:CDS |
| TTCTATGAGGGAGGCGATAA+AGG | 0.353001 | 3_2:-23012423 | Msa0399540:CDS |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.373380 | 3_2:+23013008 | None:intergenic |
| GGAGACAATGAAAGTGATTA+TGG | 0.394825 | 3_2:-23013637 | Msa0399540:CDS |
| ATAAGAACTTGTCATATAAT+GGG | 0.403187 | 3_2:-23012908 | Msa0399540:CDS |
| GCTCAGAAGGGTGGATATCC+TGG | 0.409450 | 3_2:-23012875 | Msa0399540:CDS |
| AGATCAGATTATTTCTGCTT+CGG | 0.410985 | 3_2:-23012659 | Msa0399540:CDS |
| GGTACACCAGAACATGATTA+CGG | 0.421572 | 3_2:-23013841 | Msa0399540:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | 3_2:-23013601 | Msa0399540:CDS |
| TATAAGTATGGTAAGTGTAA+AGG | 0.429361 | 3_2:-23013259 | Msa0399540:CDS |
| CATAGACAATGACGCGTACT+TGG | 0.430745 | 3_2:+23012392 | None:intergenic |
| GATATTAGACGCAATGTTAA+CGG | 0.432015 | 3_2:-23013217 | Msa0399540:CDS |
| AGCATTTATCAAGGTTAGAT+AGG | 0.434364 | 3_2:-23013141 | Msa0399540:CDS |
| GTAGAACCGTAATCATGTTC+TGG | 0.434784 | 3_2:+23013835 | None:intergenic |
| GAGAGATGAAGCATTTATCA+AGG | 0.455085 | 3_2:-23013150 | Msa0399540:CDS |
| AAGGGTGGATATCCTGGTGT+TGG | 0.458467 | 3_2:-23012869 | Msa0399540:CDS |
| ACAAAATCACCAACGGATAG+TGG | 0.461754 | 3_2:+23012594 | None:intergenic |
| AAAACATATCCGATCATTGT+TGG | 0.461905 | 3_2:-23013793 | Msa0399540:CDS |
| GGGATACATGGTGGCTCAGA+AGG | 0.464555 | 3_2:-23012888 | Msa0399540:CDS |
| TAGTGAACACGGAGCCTAGC+TGG | 0.466097 | 3_2:+23013082 | None:intergenic |
| GATGAGCGATATGATGAAAC+TGG | 0.468588 | 3_2:-23013658 | Msa0399540:CDS |
| GTAGATAAAGCACAAATTGA+TGG | 0.469140 | 3_2:-23012947 | Msa0399540:CDS |
| AGGGTGGATATCCTGGTGTT+GGG | 0.476260 | 3_2:-23012868 | Msa0399540:CDS |
| TGATTACGGTTCTACGGATG+TGG | 0.481654 | 3_2:-23013827 | Msa0399540:CDS |
| CGCGTCATTGTCTATGTGGT+TGG | 0.486238 | 3_2:-23012385 | Msa0399540:CDS |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | 3_2:-23013610 | Msa0399540:CDS |
| AAACATATCCGATCATTGTT+GGG | 0.492509 | 3_2:-23013792 | Msa0399540:CDS |
| TGTAGTTGTTGGTGAGGAAA+TGG | 0.504666 | 3_2:-23013359 | Msa0399540:CDS |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | 3_2:-23013370 | Msa0399540:CDS |
| AAGAATACTCAAGGGAATAC+AGG | 0.512005 | 3_2:-23013682 | Msa0399540:CDS |
| AGTGGCAGAATATTCACAAA+AGG | 0.514210 | 3_2:+23012727 | None:intergenic |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 3_2:-23013331 | Msa0399540:CDS |
| CAGATGGTGATGGTTCTATG+AGG | 0.523380 | 3_2:-23012436 | Msa0399540:CDS |
| CCGATCATTGTTGGGAGTGG+TGG | 0.525336 | 3_2:-23013784 | Msa0399540:CDS |
| AAACAATAGAAACTTATATG+TGG | 0.527967 | 3_2:-23012514 | Msa0399540:CDS |
| AGAACATGATTACGGTTCTA+CGG | 0.545109 | 3_2:-23013833 | Msa0399540:CDS |
| CCACCACTCCCAACAATGAT+CGG | 0.545431 | 3_2:+23013784 | None:intergenic |
| ATTTGGTGCTGCATTAGTGA+TGG | 0.548010 | 3_2:-23012540 | Msa0399540:CDS |
| CAGTATGTATGTAACAAGCA+TGG | 0.552224 | 3_2:-23013178 | Msa0399540:CDS |
| ATGTGTGCTGTTATTAAGGA+TGG | 0.553864 | 3_2:-23012806 | Msa0399540:CDS |
| TTGTCATATAATGGGATACA+TGG | 0.555297 | 3_2:-23012900 | Msa0399540:CDS |
| TGTAAATGCACAACATTGGT+TGG | 0.560698 | 3_2:+23012995 | None:intergenic |
| CAAATATAACTGTTTGTGAG+TGG | 0.565481 | 3_2:+23012558 | None:intergenic |
| GGTGATAAAGGTGAAGATGA+TGG | 0.566671 | 3_2:-23013589 | Msa0399540:CDS |
| TTCTTAGTGAACCCAACACC+AGG | 0.567834 | 3_2:+23012857 | None:intergenic |
| TTGTTGGTGAGGAAATGGTA+AGG | 0.572827 | 3_2:-23013354 | Msa0399540:CDS |
| GCATCTGAACAAGAATGCTA+TGG | 0.573073 | 3_2:-23012363 | Msa0399540:CDS |
| TACATGGTGGCTCAGAAGGG+TGG | 0.573659 | 3_2:-23012884 | Msa0399540:CDS |
| TATCCGATCATTGTTGGGAG+TGG | 0.573961 | 3_2:-23013787 | Msa0399540:CDS |
| TTATTTCTGCTTCGGCGATG+TGG | 0.577693 | 3_2:-23012651 | Msa0399540:CDS |
| AACAATAGAAACTTATATGT+GGG | 0.579140 | 3_2:-23012513 | Msa0399540:CDS |
| GATGAAAGTCAAGGTGATGA+AGG | 0.579998 | 3_2:-23013556 | Msa0399540:CDS |
| AGTATGTATGTAACAAGCAT+GGG | 0.587066 | 3_2:-23013177 | Msa0399540:CDS |
| CCAAAAGCAGTTGTAACAGA+TGG | 0.588696 | 3_2:-23012452 | Msa0399540:CDS |
| GATGAAGGTGAACGTGATGA+AGG | 0.589312 | 3_2:-23013505 | Msa0399540:CDS |
| GAAGGTGAACGTGATGAAGG+TGG | 0.592672 | 3_2:-23013502 | Msa0399540:CDS |
| GAATATTCTGCCACTGATGA+CGG | 0.599778 | 3_2:-23012719 | Msa0399540:CDS |
| GAATATTCACAAAAGGAATG+TGG | 0.603006 | 3_2:+23012734 | None:intergenic |
| GTGATAAAGGTGAAGATGAT+GGG | 0.603978 | 3_2:-23013588 | Msa0399540:CDS |
| GATGAACGTGAAGGTGATGA+AGG | 0.607198 | 3_2:-23013520 | Msa0399540:CDS |
| AGGGTGTAAATGCACAACAT+TGG | 0.610800 | 3_2:+23012991 | None:intergenic |
| GGATACATGGTGGCTCAGAA+GGG | 0.612576 | 3_2:-23012887 | Msa0399540:CDS |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | 3_2:-23013409 | Msa0399540:CDS |
| GCAGTTGTAACAGATGGTGA+TGG | 0.618869 | 3_2:-23012446 | Msa0399540:CDS |
| AGTACGCGTCATTGTCTATG+TGG | 0.628317 | 3_2:-23012389 | Msa0399540:CDS |
| TTTCAAACGTCCGTCATCAG+TGG | 0.632560 | 3_2:+23012709 | None:intergenic |
| TGCACAACATTGGTTGGAGT+AGG | 0.634569 | 3_2:+23013001 | None:intergenic |
| AGATGGTGATGGTTCTATGA+GGG | 0.637450 | 3_2:-23012435 | Msa0399540:CDS |
| GAACAAATACCACTATCCGT+TGG | 0.644673 | 3_2:-23012603 | Msa0399540:CDS |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | 3_2:-23013096 | Msa0399540:CDS |
| GGTGAACGTGATGAAGGTGG+AGG | 0.647603 | 3_2:-23013499 | Msa0399540:CDS |
| TGGTGATGGTTCTATGAGGG+AGG | 0.649015 | 3_2:-23012432 | Msa0399540:CDS |
| GGTGATGAAGGTGAAAGTGA+AGG | 0.649041 | 3_2:-23013544 | Msa0399540:CDS |
| TATGAGGGAGGCGATAAAGG+CGG | 0.662119 | 3_2:-23012420 | Msa0399540:CDS |
| TGATGATGTAGTTGTTGGTG+AGG | 0.665725 | 3_2:-23013365 | Msa0399540:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 3_2:-23013418 | Msa0399540:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 3_2:-23013463 | Msa0399540:CDS |
| TCATATAATGGGATACATGG+TGG | 0.669224 | 3_2:-23012897 | Msa0399540:CDS |
| CAGCCAGACAAAATCACCAA+CGG | 0.675472 | 3_2:+23012587 | None:intergenic |
| GATGATGATGATGTGAGTCA+TGG | 0.679569 | 3_2:-23013715 | Msa0399540:CDS |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | 3_2:-23013201 | Msa0399540:CDS |
| GACAATGAAAGTGATTATGG+TGG | 0.688706 | 3_2:-23013634 | Msa0399540:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.694719 | 3_2:-23013439 | Msa0399540:CDS |
| GGTGGAGGTGATGAAAGTGA+AGG | 0.700815 | 3_2:-23013484 | Msa0399540:CDS |
| ATTGATGGTCTTCAGTCACA+CGG | 0.717148 | 3_2:-23012932 | Msa0399540:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3_2:-23013424 | Msa0399540:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3_2:-23013469 | Msa0399540:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.727165 | 3_2:-23013565 | Msa0399540:CDS |
| AGTGAAGGCGATGAACGTGA+AGG | 0.732999 | 3_2:-23013529 | Msa0399540:CDS |
| TATTTATCGGAAAATATACG+AGG | 0.773295 | 3_2:-23012969 | Msa0399540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATTTTTATTATAAGTA+TGG | - | chr3_2:23012868-23012887 | Msa0399540:CDS | 10.0% |
| !!! | TACAATTTTTATTATAAGTA+TGG | - | chr3_2:23012868-23012887 | Msa0399540:CDS | 10.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr3_2:23013230-23013249 | Msa0399540:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr3_2:23013231-23013250 | Msa0399540:CDS | 20.0% |
| !! | AAACAATAGAAACTTATATG+TGG | - | chr3_2:23013625-23013644 | Msa0399540:CDS | 20.0% |
| !! | AACAATAGAAACTTATATGT+GGG | - | chr3_2:23013626-23013645 | Msa0399540:CDS | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr3_2:23013230-23013249 | Msa0399540:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr3_2:23013231-23013250 | Msa0399540:CDS | 20.0% |
| !! | AAACAATAGAAACTTATATG+TGG | - | chr3_2:23013625-23013644 | Msa0399540:CDS | 20.0% |
| !! | AACAATAGAAACTTATATGT+GGG | - | chr3_2:23013626-23013645 | Msa0399540:CDS | 20.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr3_2:23012270-23012289 | Msa0399540:CDS | 25.0% |
| !! | AATTTTACGAAGAATACTCA+AGG | - | chr3_2:23012448-23012467 | Msa0399540:CDS | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+GGG | - | chr3_2:23012449-23012468 | Msa0399540:CDS | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr3_2:23012808-23012827 | Msa0399540:CDS | 25.0% |
| ! | TATAAGTATGGTAAGTGTAA+AGG | - | chr3_2:23012880-23012899 | Msa0399540:CDS | 25.0% |
| !! | CGTATATTTTCCGATAAATA+GGG | + | chr3_2:23013170-23013189 | None:intergenic | 25.0% |
| !! | TCGTATATTTTCCGATAAAT+AGG | + | chr3_2:23013171-23013190 | None:intergenic | 25.0% |
| ! | TATTTATCGGAAAATATACG+AGG | - | chr3_2:23013170-23013189 | Msa0399540:CDS | 25.0% |
| !! | AAAAATGTGTGCTGTTATTA+AGG | - | chr3_2:23013329-23013348 | Msa0399540:CDS | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr3_2:23013443-23013462 | Msa0399540:CDS | 25.0% |
| !!! | ACTAGTTTTCTAGATTGTAT+GGG | - | chr3_2:23013654-23013673 | Msa0399540:CDS | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr3_2:23013839-23013858 | Msa0399540:CDS | 25.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr3_2:23012270-23012289 | Msa0399540:CDS | 25.0% |
| !! | AATTTTACGAAGAATACTCA+AGG | - | chr3_2:23012448-23012467 | Msa0399540:CDS | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+GGG | - | chr3_2:23012449-23012468 | Msa0399540:CDS | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr3_2:23012808-23012827 | Msa0399540:CDS | 25.0% |
| ! | TATAAGTATGGTAAGTGTAA+AGG | - | chr3_2:23012880-23012899 | Msa0399540:CDS | 25.0% |
| !! | CGTATATTTTCCGATAAATA+GGG | + | chr3_2:23013170-23013189 | None:intergenic | 25.0% |
| !! | TCGTATATTTTCCGATAAAT+AGG | + | chr3_2:23013171-23013190 | None:intergenic | 25.0% |
| ! | TATTTATCGGAAAATATACG+AGG | - | chr3_2:23013170-23013189 | Msa0399540:CDS | 25.0% |
| !! | AAAAATGTGTGCTGTTATTA+AGG | - | chr3_2:23013329-23013348 | Msa0399540:CDS | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr3_2:23013443-23013462 | Msa0399540:CDS | 25.0% |
| !!! | ACTAGTTTTCTAGATTGTAT+GGG | - | chr3_2:23013654-23013673 | Msa0399540:CDS | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | - | chr3_2:23013839-23013858 | Msa0399540:CDS | 25.0% |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr3_2:23012277-23012296 | Msa0399540:CDS | 30.0% |
| AAAACATATCCGATCATTGT+TGG | - | chr3_2:23012346-23012365 | Msa0399540:CDS | 30.0% | |
| AAACATATCCGATCATTGTT+GGG | - | chr3_2:23012347-23012366 | Msa0399540:CDS | 30.0% | |
| GATATTAGACGCAATGTTAA+CGG | - | chr3_2:23012922-23012941 | Msa0399540:CDS | 30.0% | |
| AGTATGTATGTAACAAGCAT+GGG | - | chr3_2:23012962-23012981 | Msa0399540:CDS | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | - | chr3_2:23012998-23013017 | Msa0399540:CDS | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr3_2:23013087-23013106 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr3_2:23013101-23013120 | Msa0399540:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr3_2:23013102-23013121 | Msa0399540:CDS | 30.0% |
| TGCATTTACACCCTATTTAT+CGG | - | chr3_2:23013157-23013176 | Msa0399540:CDS | 30.0% | |
| GTAGATAAAGCACAAATTGA+TGG | - | chr3_2:23013192-23013211 | Msa0399540:CDS | 30.0% | |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr3_2:23013239-23013258 | Msa0399540:CDS | 30.0% |
| GAATATTCACAAAAGGAATG+TGG | + | chr3_2:23013408-23013427 | None:intergenic | 30.0% | |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr3_2:23013442-23013461 | Msa0399540:CDS | 30.0% |
| !! | AAATGTCTATTTTGGGAAGA+TGG | - | chr3_2:23013450-23013469 | Msa0399540:CDS | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+CGG | - | chr3_2:23013480-23013499 | Msa0399540:CDS | 30.0% |
| CAAATATAACTGTTTGTGAG+TGG | + | chr3_2:23013584-23013603 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | - | chr3_2:23013582-23013601 | Msa0399540:CDS | 30.0% | |
| !!! | GACTAGTTTTCTAGATTGTA+TGG | - | chr3_2:23013653-23013672 | Msa0399540:CDS | 30.0% |
| !!! | TGTCAAGAATTCAGCTTTTT+TGG | - | chr3_2:23013803-23013822 | Msa0399540:CDS | 30.0% |
| !!! | AAGAATTCAGCTTTTTTGGA+AGG | - | chr3_2:23013807-23013826 | Msa0399540:CDS | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | - | chr3_2:23013842-23013861 | Msa0399540:CDS | 30.0% |
| ! | AGGATGAATTTGAAGAGTTT+TGG | - | chr3_2:23013862-23013881 | Msa0399540:CDS | 30.0% |
| ! | GGATGAATTTGAAGAGTTTT+GGG | - | chr3_2:23013863-23013882 | Msa0399540:CDS | 30.0% |
| ! | GATGAATTTGAAGAGTTTTG+GGG | - | chr3_2:23013864-23013883 | Msa0399540:CDS | 30.0% |
| !! | ATGAATTTGAAGAGTTTTGG+GGG | - | chr3_2:23013865-23013884 | Msa0399540:CDS | 30.0% |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr3_2:23012277-23012296 | Msa0399540:CDS | 30.0% |
| AAAACATATCCGATCATTGT+TGG | - | chr3_2:23012346-23012365 | Msa0399540:CDS | 30.0% | |
| AAACATATCCGATCATTGTT+GGG | - | chr3_2:23012347-23012366 | Msa0399540:CDS | 30.0% | |
| GATATTAGACGCAATGTTAA+CGG | - | chr3_2:23012922-23012941 | Msa0399540:CDS | 30.0% | |
| AGTATGTATGTAACAAGCAT+GGG | - | chr3_2:23012962-23012981 | Msa0399540:CDS | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | - | chr3_2:23012998-23013017 | Msa0399540:CDS | 30.0% | |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr3_2:23013087-23013106 | None:intergenic | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr3_2:23013101-23013120 | Msa0399540:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr3_2:23013102-23013121 | Msa0399540:CDS | 30.0% |
| TGCATTTACACCCTATTTAT+CGG | - | chr3_2:23013157-23013176 | Msa0399540:CDS | 30.0% | |
| GTAGATAAAGCACAAATTGA+TGG | - | chr3_2:23013192-23013211 | Msa0399540:CDS | 30.0% | |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr3_2:23013239-23013258 | Msa0399540:CDS | 30.0% |
| GAATATTCACAAAAGGAATG+TGG | + | chr3_2:23013408-23013427 | None:intergenic | 30.0% | |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr3_2:23013442-23013461 | Msa0399540:CDS | 30.0% |
| !! | AAATGTCTATTTTGGGAAGA+TGG | - | chr3_2:23013450-23013469 | Msa0399540:CDS | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+CGG | - | chr3_2:23013480-23013499 | Msa0399540:CDS | 30.0% |
| CAAATATAACTGTTTGTGAG+TGG | + | chr3_2:23013584-23013603 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | - | chr3_2:23013582-23013601 | Msa0399540:CDS | 30.0% | |
| !!! | GACTAGTTTTCTAGATTGTA+TGG | - | chr3_2:23013653-23013672 | Msa0399540:CDS | 30.0% |
| !!! | TGTCAAGAATTCAGCTTTTT+TGG | - | chr3_2:23013803-23013822 | Msa0399540:CDS | 30.0% |
| !!! | AAGAATTCAGCTTTTTTGGA+AGG | - | chr3_2:23013807-23013826 | Msa0399540:CDS | 30.0% |
| ! | AATGTACTCTAATTTTACGG+AGG | - | chr3_2:23013842-23013861 | Msa0399540:CDS | 30.0% |
| ! | AGGATGAATTTGAAGAGTTT+TGG | - | chr3_2:23013862-23013881 | Msa0399540:CDS | 30.0% |
| ! | GGATGAATTTGAAGAGTTTT+GGG | - | chr3_2:23013863-23013882 | Msa0399540:CDS | 30.0% |
| ! | GATGAATTTGAAGAGTTTTG+GGG | - | chr3_2:23013864-23013883 | Msa0399540:CDS | 30.0% |
| !! | ATGAATTTGAAGAGTTTTGG+GGG | - | chr3_2:23013865-23013884 | Msa0399540:CDS | 30.0% |
| AGAACATGATTACGGTTCTA+CGG | - | chr3_2:23012306-23012325 | Msa0399540:CDS | 35.0% | |
| AAGAATACTCAAGGGAATAC+AGG | - | chr3_2:23012457-23012476 | Msa0399540:CDS | 35.0% | |
| GGAGACAATGAAAGTGATTA+TGG | - | chr3_2:23012502-23012521 | Msa0399540:CDS | 35.0% | |
| GACAATGAAAGTGATTATGG+TGG | - | chr3_2:23012505-23012524 | Msa0399540:CDS | 35.0% | |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr3_2:23012538-23012557 | Msa0399540:CDS | 35.0% |
| GTGATAAAGGTGAAGATGAT+GGG | - | chr3_2:23012551-23012570 | Msa0399540:CDS | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr3_2:23012574-23012593 | Msa0399540:CDS | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr3_2:23012700-23012719 | Msa0399540:CDS | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | chr3_2:23012769-23012788 | Msa0399540:CDS | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | chr3_2:23012815-23012834 | Msa0399540:CDS | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr3_2:23012822-23012841 | Msa0399540:CDS | 35.0% | |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr3_2:23012893-23012912 | Msa0399540:CDS | 35.0% |
| TTAACGGTGAGATTGTAATG+AGG | - | chr3_2:23012938-23012957 | Msa0399540:CDS | 35.0% | |
| CAGTATGTATGTAACAAGCA+TGG | - | chr3_2:23012961-23012980 | Msa0399540:CDS | 35.0% | |
| ! | GAGAGATGAAGCATTTATCA+AGG | - | chr3_2:23012989-23013008 | Msa0399540:CDS | 35.0% |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr3_2:23013088-23013107 | None:intergenic | 35.0% |
| TGTAAATGCACAACATTGGT+TGG | + | chr3_2:23013147-23013166 | None:intergenic | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | chr3_2:23013242-23013261 | Msa0399540:CDS | 35.0% |
| ! | ATGTGTGCTGTTATTAAGGA+TGG | - | chr3_2:23013333-23013352 | Msa0399540:CDS | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | chr3_2:23013415-23013434 | None:intergenic | 35.0% | |
| AGAACATGATTACGGTTCTA+CGG | - | chr3_2:23012306-23012325 | Msa0399540:CDS | 35.0% | |
| AAGAATACTCAAGGGAATAC+AGG | - | chr3_2:23012457-23012476 | Msa0399540:CDS | 35.0% | |
| GGAGACAATGAAAGTGATTA+TGG | - | chr3_2:23012502-23012521 | Msa0399540:CDS | 35.0% | |
| GACAATGAAAGTGATTATGG+TGG | - | chr3_2:23012505-23012524 | Msa0399540:CDS | 35.0% | |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr3_2:23012538-23012557 | Msa0399540:CDS | 35.0% |
| GTGATAAAGGTGAAGATGAT+GGG | - | chr3_2:23012551-23012570 | Msa0399540:CDS | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr3_2:23012574-23012593 | Msa0399540:CDS | 35.0% | |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr3_2:23012700-23012719 | Msa0399540:CDS | 35.0% |
| ! | GAAGATGATGATGTAGTTGT+TGG | - | chr3_2:23012769-23012788 | Msa0399540:CDS | 35.0% |
| CATTAACTGCTGAAGGAATA+AGG | - | chr3_2:23012815-23012834 | Msa0399540:CDS | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr3_2:23012822-23012841 | Msa0399540:CDS | 35.0% | |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr3_2:23012893-23012912 | Msa0399540:CDS | 35.0% |
| TTAACGGTGAGATTGTAATG+AGG | - | chr3_2:23012938-23012957 | Msa0399540:CDS | 35.0% | |
| CAGTATGTATGTAACAAGCA+TGG | - | chr3_2:23012961-23012980 | Msa0399540:CDS | 35.0% | |
| ! | GAGAGATGAAGCATTTATCA+AGG | - | chr3_2:23012989-23013008 | Msa0399540:CDS | 35.0% |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr3_2:23013088-23013107 | None:intergenic | 35.0% |
| TGTAAATGCACAACATTGGT+TGG | + | chr3_2:23013147-23013166 | None:intergenic | 35.0% | |
| ! | TCATATAATGGGATACATGG+TGG | - | chr3_2:23013242-23013261 | Msa0399540:CDS | 35.0% |
| ! | ATGTGTGCTGTTATTAAGGA+TGG | - | chr3_2:23013333-23013352 | Msa0399540:CDS | 35.0% |
| AGTGGCAGAATATTCACAAA+AGG | + | chr3_2:23013415-23013434 | None:intergenic | 35.0% | |
| GGTACACCAGAACATGATTA+CGG | - | chr3_2:23012298-23012317 | Msa0399540:CDS | 40.0% | |
| GTAGAACCGTAATCATGTTC+TGG | + | chr3_2:23012307-23012326 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr3_2:23012424-23012443 | Msa0399540:CDS | 40.0% |
| GATGAGCGATATGATGAAAC+TGG | - | chr3_2:23012481-23012500 | Msa0399540:CDS | 40.0% | |
| AGTGATTATGGTGGTTGTTC+TGG | - | chr3_2:23012514-23012533 | Msa0399540:CDS | 40.0% | |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr3_2:23012529-23012548 | Msa0399540:CDS | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr3_2:23012550-23012569 | Msa0399540:CDS | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | chr3_2:23012583-23012602 | Msa0399540:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3_2:23012670-23012689 | Msa0399540:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3_2:23012670-23012689 | Msa0399540:CDS | 40.0% | |
| ! | TGATGATGTAGTTGTTGGTG+AGG | - | chr3_2:23012774-23012793 | Msa0399540:CDS | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr3_2:23012780-23012799 | Msa0399540:CDS | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr3_2:23012785-23012804 | Msa0399540:CDS | 40.0% |
| !! | TTTTGGGTCTGTAGTGAACA+CGG | + | chr3_2:23013071-23013090 | None:intergenic | 40.0% |
| TGTTCACTACAGACCCAAAA+AGG | - | chr3_2:23013071-23013090 | Msa0399540:CDS | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | - | chr3_2:23013072-23013091 | Msa0399540:CDS | 40.0% | |
| AGGGTGTAAATGCACAACAT+TGG | + | chr3_2:23013151-23013170 | None:intergenic | 40.0% | |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | chr3_2:23013207-23013226 | Msa0399540:CDS | 40.0% |
| GAATATTCTGCCACTGATGA+CGG | - | chr3_2:23013420-23013439 | Msa0399540:CDS | 40.0% | |
| GAACAAATACCACTATCCGT+TGG | - | chr3_2:23013536-23013555 | Msa0399540:CDS | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | chr3_2:23013548-23013567 | None:intergenic | 40.0% | |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | - | chr3_2:23013549-23013568 | Msa0399540:CDS | 40.0% |
| !! | ATTTGGTGCTGCATTAGTGA+TGG | - | chr3_2:23013599-23013618 | Msa0399540:CDS | 40.0% |
| ! | CCATCTGTTACAACTGCTTT+TGG | + | chr3_2:23013690-23013709 | None:intergenic | 40.0% |
| CCAAAAGCAGTTGTAACAGA+TGG | - | chr3_2:23013687-23013706 | Msa0399540:CDS | 40.0% | |
| !! | AGATGGTGATGGTTCTATGA+GGG | - | chr3_2:23013704-23013723 | Msa0399540:CDS | 40.0% |
| GCATCTGAACAAGAATGCTA+TGG | - | chr3_2:23013776-23013795 | Msa0399540:CDS | 40.0% | |
| GGTACACCAGAACATGATTA+CGG | - | chr3_2:23012298-23012317 | Msa0399540:CDS | 40.0% | |
| GTAGAACCGTAATCATGTTC+TGG | + | chr3_2:23012307-23012326 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr3_2:23012424-23012443 | Msa0399540:CDS | 40.0% |
| GATGAGCGATATGATGAAAC+TGG | - | chr3_2:23012481-23012500 | Msa0399540:CDS | 40.0% | |
| AGTGATTATGGTGGTTGTTC+TGG | - | chr3_2:23012514-23012533 | Msa0399540:CDS | 40.0% | |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr3_2:23012529-23012548 | Msa0399540:CDS | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr3_2:23012550-23012569 | Msa0399540:CDS | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | chr3_2:23012583-23012602 | Msa0399540:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3_2:23012670-23012689 | Msa0399540:CDS | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3_2:23012670-23012689 | Msa0399540:CDS | 40.0% | |
| ! | TGATGATGTAGTTGTTGGTG+AGG | - | chr3_2:23012774-23012793 | Msa0399540:CDS | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr3_2:23012780-23012799 | Msa0399540:CDS | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr3_2:23012785-23012804 | Msa0399540:CDS | 40.0% |
| !! | TTTTGGGTCTGTAGTGAACA+CGG | + | chr3_2:23013071-23013090 | None:intergenic | 40.0% |
| TGTTCACTACAGACCCAAAA+AGG | - | chr3_2:23013071-23013090 | Msa0399540:CDS | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | - | chr3_2:23013072-23013091 | Msa0399540:CDS | 40.0% | |
| AGGGTGTAAATGCACAACAT+TGG | + | chr3_2:23013151-23013170 | None:intergenic | 40.0% | |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | chr3_2:23013207-23013226 | Msa0399540:CDS | 40.0% |
| GAATATTCTGCCACTGATGA+CGG | - | chr3_2:23013420-23013439 | Msa0399540:CDS | 40.0% | |
| GAACAAATACCACTATCCGT+TGG | - | chr3_2:23013536-23013555 | Msa0399540:CDS | 40.0% | |
| ACAAAATCACCAACGGATAG+TGG | + | chr3_2:23013548-23013567 | None:intergenic | 40.0% | |
| !!! | TATCCGTTGGTGATTTTGTC+TGG | - | chr3_2:23013549-23013568 | Msa0399540:CDS | 40.0% |
| !! | ATTTGGTGCTGCATTAGTGA+TGG | - | chr3_2:23013599-23013618 | Msa0399540:CDS | 40.0% |
| ! | CCATCTGTTACAACTGCTTT+TGG | + | chr3_2:23013690-23013709 | None:intergenic | 40.0% |
| CCAAAAGCAGTTGTAACAGA+TGG | - | chr3_2:23013687-23013706 | Msa0399540:CDS | 40.0% | |
| !! | AGATGGTGATGGTTCTATGA+GGG | - | chr3_2:23013704-23013723 | Msa0399540:CDS | 40.0% |
| GCATCTGAACAAGAATGCTA+TGG | - | chr3_2:23013776-23013795 | Msa0399540:CDS | 40.0% | |
| TGATTACGGTTCTACGGATG+TGG | - | chr3_2:23012312-23012331 | Msa0399540:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | chr3_2:23012352-23012371 | Msa0399540:CDS | 45.0% | |
| GGTGATGAAGGTGAAAGTGA+AGG | - | chr3_2:23012595-23012614 | Msa0399540:CDS | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | - | chr3_2:23012619-23012638 | Msa0399540:CDS | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | - | chr3_2:23012634-23012653 | Msa0399540:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3_2:23012676-23012695 | Msa0399540:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3_2:23012676-23012695 | Msa0399540:CDS | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr3_2:23012685-23012704 | Msa0399540:CDS | 45.0% |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr3_2:23013134-23013153 | None:intergenic | 45.0% |
| ! | TGCACAACATTGGTTGGAGT+AGG | + | chr3_2:23013141-23013160 | None:intergenic | 45.0% |
| TTCTTAGTGAACCCAACACC+AGG | + | chr3_2:23013285-23013304 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | chr3_2:23013433-23013452 | None:intergenic | 45.0% | |
| !! | TTATTTCTGCTTCGGCGATG+TGG | - | chr3_2:23013488-23013507 | Msa0399540:CDS | 45.0% |
| CAGCCAGACAAAATCACCAA+CGG | + | chr3_2:23013555-23013574 | None:intergenic | 45.0% | |
| GCAGTTGTAACAGATGGTGA+TGG | - | chr3_2:23013693-23013712 | Msa0399540:CDS | 45.0% | |
| !! | CAGATGGTGATGGTTCTATG+AGG | - | chr3_2:23013703-23013722 | Msa0399540:CDS | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr3_2:23013716-23013735 | Msa0399540:CDS | 45.0% | |
| CATAGACAATGACGCGTACT+TGG | + | chr3_2:23013750-23013769 | None:intergenic | 45.0% | |
| AGTACGCGTCATTGTCTATG+TGG | - | chr3_2:23013750-23013769 | Msa0399540:CDS | 45.0% | |
| !!! | TTGAAGAGTTTTGGGGGACT+TGG | - | chr3_2:23013871-23013890 | Msa0399540:CDS | 45.0% |
| TGATTACGGTTCTACGGATG+TGG | - | chr3_2:23012312-23012331 | Msa0399540:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | chr3_2:23012352-23012371 | Msa0399540:CDS | 45.0% | |
| GGTGATGAAGGTGAAAGTGA+AGG | - | chr3_2:23012595-23012614 | Msa0399540:CDS | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | - | chr3_2:23012619-23012638 | Msa0399540:CDS | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | - | chr3_2:23012634-23012653 | Msa0399540:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3_2:23012676-23012695 | Msa0399540:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3_2:23012676-23012695 | Msa0399540:CDS | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr3_2:23012685-23012704 | Msa0399540:CDS | 45.0% |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr3_2:23013134-23013153 | None:intergenic | 45.0% |
| ! | TGCACAACATTGGTTGGAGT+AGG | + | chr3_2:23013141-23013160 | None:intergenic | 45.0% |
| TTCTTAGTGAACCCAACACC+AGG | + | chr3_2:23013285-23013304 | None:intergenic | 45.0% | |
| TTTCAAACGTCCGTCATCAG+TGG | + | chr3_2:23013433-23013452 | None:intergenic | 45.0% | |
| !! | TTATTTCTGCTTCGGCGATG+TGG | - | chr3_2:23013488-23013507 | Msa0399540:CDS | 45.0% |
| CAGCCAGACAAAATCACCAA+CGG | + | chr3_2:23013555-23013574 | None:intergenic | 45.0% | |
| GCAGTTGTAACAGATGGTGA+TGG | - | chr3_2:23013693-23013712 | Msa0399540:CDS | 45.0% | |
| !! | CAGATGGTGATGGTTCTATG+AGG | - | chr3_2:23013703-23013722 | Msa0399540:CDS | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | - | chr3_2:23013716-23013735 | Msa0399540:CDS | 45.0% | |
| CATAGACAATGACGCGTACT+TGG | + | chr3_2:23013750-23013769 | None:intergenic | 45.0% | |
| AGTACGCGTCATTGTCTATG+TGG | - | chr3_2:23013750-23013769 | Msa0399540:CDS | 45.0% | |
| !!! | TTGAAGAGTTTTGGGGGACT+TGG | - | chr3_2:23013871-23013890 | Msa0399540:CDS | 45.0% |
| CCACCACTCCCAACAATGAT+CGG | + | chr3_2:23012358-23012377 | None:intergenic | 50.0% | |
| AGTGAAGGCGATGAACGTGA+AGG | - | chr3_2:23012610-23012629 | Msa0399540:CDS | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr3_2:23012637-23012656 | Msa0399540:CDS | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr3_2:23012655-23012674 | Msa0399540:CDS | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr3_2:23013043-23013062 | Msa0399540:CDS | 50.0% |
| GGATACATGGTGGCTCAGAA+GGG | - | chr3_2:23013252-23013271 | Msa0399540:CDS | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | - | chr3_2:23013270-23013289 | Msa0399540:CDS | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | chr3_2:23013271-23013290 | Msa0399540:CDS | 50.0% | |
| !! | TGGTGATGGTTCTATGAGGG+AGG | - | chr3_2:23013707-23013726 | Msa0399540:CDS | 50.0% |
| TATGAGGGAGGCGATAAAGG+CGG | - | chr3_2:23013719-23013738 | Msa0399540:CDS | 50.0% | |
| CGCGTCATTGTCTATGTGGT+TGG | - | chr3_2:23013754-23013773 | Msa0399540:CDS | 50.0% | |
| CCACCACTCCCAACAATGAT+CGG | + | chr3_2:23012358-23012377 | None:intergenic | 50.0% | |
| AGTGAAGGCGATGAACGTGA+AGG | - | chr3_2:23012610-23012629 | Msa0399540:CDS | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr3_2:23012637-23012656 | Msa0399540:CDS | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr3_2:23012655-23012674 | Msa0399540:CDS | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr3_2:23013043-23013062 | Msa0399540:CDS | 50.0% |
| GGATACATGGTGGCTCAGAA+GGG | - | chr3_2:23013252-23013271 | Msa0399540:CDS | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | - | chr3_2:23013270-23013289 | Msa0399540:CDS | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | chr3_2:23013271-23013290 | Msa0399540:CDS | 50.0% | |
| !! | TGGTGATGGTTCTATGAGGG+AGG | - | chr3_2:23013707-23013726 | Msa0399540:CDS | 50.0% |
| TATGAGGGAGGCGATAAAGG+CGG | - | chr3_2:23013719-23013738 | Msa0399540:CDS | 50.0% | |
| CGCGTCATTGTCTATGTGGT+TGG | - | chr3_2:23013754-23013773 | Msa0399540:CDS | 50.0% | |
| CCGATCATTGTTGGGAGTGG+TGG | - | chr3_2:23012355-23012374 | Msa0399540:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr3_2:23012640-23012659 | Msa0399540:CDS | 55.0% | |
| TAGTGAACACGGAGCCTAGC+TGG | + | chr3_2:23013060-23013079 | None:intergenic | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr3_2:23013251-23013270 | Msa0399540:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr3_2:23013255-23013274 | Msa0399540:CDS | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr3_2:23013264-23013283 | Msa0399540:CDS | 55.0% | |
| CCGATCATTGTTGGGAGTGG+TGG | - | chr3_2:23012355-23012374 | Msa0399540:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr3_2:23012640-23012659 | Msa0399540:CDS | 55.0% | |
| TAGTGAACACGGAGCCTAGC+TGG | + | chr3_2:23013060-23013079 | None:intergenic | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr3_2:23013251-23013270 | Msa0399540:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr3_2:23013255-23013274 | Msa0399540:CDS | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr3_2:23013264-23013283 | Msa0399540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 23012265 | 23013896 | 23012265 | ID=Msa0399540;Name=Msa0399540 |
| chr3_2 | mRNA | 23012265 | 23013896 | 23012265 | ID=Msa0399540-mRNA-1;Parent=Msa0399540;Name=Msa0399540-mRNA-1;_AED=0.20;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|543 |
| chr3_2 | exon | 23012265 | 23013896 | 23012265 | ID=Msa0399540-mRNA-1:exon:4866;Parent=Msa0399540-mRNA-1 |
| chr3_2 | CDS | 23012265 | 23013896 | 23012265 | ID=Msa0399540-mRNA-1:cds;Parent=Msa0399540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
