AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0401450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401450 MtrunA17_Chr3g0090311 100.000 183 0 0 1 183 1 183 1.42e-138 384
Msa0401450 MtrunA17_Chr7g0275421 34.400 125 81 1 27 151 12 135 1.13e-21 86.3
Msa0401450 MtrunA17_Chr3g0098461 33.152 184 95 6 2 183 6 163 3.54e-14 67.0
Msa0401450 MtrunA17_Chr7g0252251 31.373 153 96 4 23 169 65 214 4.50e-14 67.8
Msa0401450 MtrunA17_Chr3g0088851 44.444 99 46 2 2 100 6 95 4.71e-14 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401450 AT5G13780.1 88.202 178 20 1 1 178 1 177 1.91e-107 305
Msa0401450 AT1G03150.1 37.086 151 94 1 1 151 1 150 6.67e-31 110
Msa0401450 AT2G38130.2 34.921 126 79 3 23 148 38 160 1.91e-14 68.6
Msa0401450 AT2G38130.1 34.921 126 79 3 23 148 38 160 1.91e-14 68.6

Find 72 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTTGATTTGGAGATTT+AGG 0.093155 3_2:+27423350 None:intergenic
GGATTTGATTTGGAGATTTA+GGG 0.267031 3_2:+27423351 None:intergenic
TGATTTGGAGATTTAGGGTT+AGG 0.307805 3_2:+27423356 None:intergenic
ATCTCTACCATATCCTTTCA+TGG 0.314795 3_2:-27423220 Msa0401450:CDS
AACAAAGACACTTAAGAAAC+TGG 0.371891 3_2:+27417860 None:intergenic
TTGAGGACTCATCGGAAGTT+GGG 0.373691 3_2:-27423083 Msa0401450:CDS
CTCTGTCTGACACAGGTGTT+TGG 0.376562 3_2:-27418166 Msa0401450:intron
CATGGCGGTGGATGTTGTTC+TGG 0.380099 3_2:-27417950 Msa0401450:CDS
GTGGAGTAGAGGATTTGATT+TGG 0.387768 3_2:+27423341 None:intergenic
CATCGCGAGTAGGTCGTTTA+CGG 0.388202 3_2:+27423292 None:intergenic
CTCACCATCGGCATAATACT+TGG 0.397635 3_2:+27418048 None:intergenic
TAAATGAATGCACCCGTTTG+TGG 0.398743 3_2:-27417686 Msa0401450:three_prime_UTR
GCTGCGGCCATGAAAGGATA+TGG 0.408084 3_2:+27423213 None:intergenic
AGGAAATTGCACACACAATC+AGG 0.411418 3_2:+27417904 None:intergenic
GGTAGAGATAATACTTCATC+TGG 0.416566 3_2:+27423234 None:intergenic
GATTACAACGGGCGTATTGT+TGG 0.428125 3_2:-27423173 Msa0401450:CDS
AATTTGTACACAGAGACATT+GGG 0.436747 3_2:-27418094 Msa0401450:CDS
AGTACGTGTCGCTGCACGTC+AGG 0.443312 3_2:-27418138 Msa0401450:CDS
ATGTTAATTCAGAGAGAAAG+AGG 0.450377 3_2:-27417587 Msa0401450:three_prime_UTR
ACGTAACAGAGAGCATTATT+CGG 0.452550 3_2:+27417779 None:intergenic
ATTACAACGGGCGTATTGTT+GGG 0.454521 3_2:-27423172 Msa0401450:CDS
TACTTCATCTGGTAATTCTC+TGG 0.457563 3_2:+27423245 None:intergenic
CATGTCATGATACTTGATTA+TGG 0.459487 3_2:-27417658 Msa0401450:three_prime_UTR
ATGACATGATGAACCACAAA+CGG 0.465803 3_2:+27417673 None:intergenic
TGCGCAGAATGCTATGGAAC+AGG 0.469671 3_2:-27423036 Msa0401450:intron
TTACTTCTCTTGCTGTGTTG+AGG 0.475222 3_2:-27423100 Msa0401450:CDS
GATTTGGAGATTTAGGGTTA+GGG 0.490249 3_2:+27423357 None:intergenic
CTAGTTTGATATTGACAAGA+TGG 0.498485 3_2:-27417812 Msa0401450:three_prime_UTR
TGGGTATGTTCTTGCGAAGA+TGG 0.502832 3_2:-27423153 Msa0401450:CDS
TAATTTGTACACAGAGACAT+TGG 0.506484 3_2:-27418095 Msa0401450:CDS
GTTGAGGACTCATCGGAAGT+TGG 0.509733 3_2:-27423084 Msa0401450:CDS
CACCACCACCACCATGGCGG+TGG 0.513426 3_2:-27417962 Msa0401450:CDS
TGGTGATGATGATGCTGTGG+TGG 0.516982 3_2:+27417980 None:intergenic
TGACATGATGAACCACAAAC+GGG 0.524772 3_2:+27417674 None:intergenic
AACATCCACCGCCATGGTGG+TGG 0.527634 3_2:+27417957 None:intergenic
GTGGGGAAATCGAATGTTGA+AGG 0.527854 3_2:+27423399 None:intergenic
ACGTTGCTGAAGATTACAAC+GGG 0.530845 3_2:-27423184 Msa0401450:CDS
ATCCACCGCCATGGTGGTGG+TGG 0.531254 3_2:+27417960 None:intergenic
GGTGATGATGATGCTGTGGT+GGG 0.531337 3_2:+27417981 None:intergenic
GACTGCTGCGCAGAATGCTA+TGG 0.532516 3_2:-27423042 Msa0401450:CDS
AAAGAAGCTGCGGCCATGAA+AGG 0.548179 3_2:+27423207 None:intergenic
TGGGGAAATCGAATGTTGAA+GGG 0.564663 3_2:+27423400 None:intergenic
TGTTCTTGCGAAGATGGAAG+AGG 0.566965 3_2:-27423147 Msa0401450:CDS
TTGCTGTGTTGAGGACTCAT+CGG 0.568495 3_2:-27423091 Msa0401450:CDS
ACACCATTGTTGTGGAGTAG+AGG 0.569455 3_2:+27423330 None:intergenic
GCGTATGCACACCATTGTTG+TGG 0.579484 3_2:+27423322 None:intergenic
GTCGTAAGCATCCTCACCAT+CGG 0.583433 3_2:+27418036 None:intergenic
TGAGGACTCATCGGAAGTTG+GGG 0.585463 3_2:-27423082 Msa0401450:CDS
TCAGGCTTTAGCATTCCCCT+TGG 0.589203 3_2:+27417922 None:intergenic
TGGTGGTGATGATGATGCTG+TGG 0.594446 3_2:+27417977 None:intergenic
GACATGAGAAAGCAACTCAA+GGG 0.594794 3_2:-27418016 Msa0401450:CDS
CGCGAGTAGGTCGTTTACGG+TGG 0.604458 3_2:+27423295 None:intergenic
CGACATGAGAAAGCAACTCA+AGG 0.607954 3_2:-27418017 Msa0401450:CDS
ATTTGTACACAGAGACATTG+GGG 0.621381 3_2:-27418093 Msa0401450:CDS
GGGGTACAAGATTCATGATG+TGG 0.625757 3_2:-27418074 Msa0401450:CDS
TGTTGTTCTGGTGAGACCAA+GGG 0.630820 3_2:-27417938 Msa0401450:CDS
ATGTTGTTCTGGTGAGACCA+AGG 0.634317 3_2:-27417939 Msa0401450:CDS
GAGGAGACGAATGAGTGTCA+TGG 0.634564 3_2:-27423128 Msa0401450:CDS
CAGAACAACATCCACCGCCA+TGG 0.635963 3_2:+27417951 None:intergenic
CAAGTATTATGCCGATGGTG+AGG 0.639380 3_2:-27418047 Msa0401450:CDS
GTACAAGATTCATGATGTGG+AGG 0.644670 3_2:-27418071 Msa0401450:CDS
GTTGTTCTGGTGAGACCAAG+GGG 0.645711 3_2:-27417937 Msa0401450:CDS
TGCACGCTTGCATCGCGAGT+AGG 0.650168 3_2:+27423282 None:intergenic
CATCATCACCACCACCACCA+TGG 0.659708 3_2:-27417968 Msa0401450:CDS
TACGTTGCTGAAGATTACAA+CGG 0.660668 3_2:-27423185 Msa0401450:CDS
AATCCTCTACTCCACAACAA+TGG 0.661614 3_2:-27423333 Msa0401450:exon
ACATGAGAAAGCAACTCAAG+GGG 0.666287 3_2:-27418015 Msa0401450:CDS
TCAGCAACGTAAAGAAGCTG+CGG 0.667671 3_2:+27423197 None:intergenic
AACAACATCCACCGCCATGG+TGG 0.672650 3_2:+27417954 None:intergenic
GAGGCCAAGTATTATGCCGA+TGG 0.673456 3_2:-27418052 Msa0401450:CDS
TGTACAAATTAAAAGCTGCA+CGG 0.679752 3_2:+27418107 None:intergenic
CATCACCACCACCACCATGG+CGG 0.743898 3_2:-27417965 Msa0401450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATTTTAAAAAAAT+TGG - chr3_2:27420020-27420039 Msa0401450:intron 0.0%
!!! TATTTTATTTTAAAAAAATT+GGG - chr3_2:27420021-27420040 Msa0401450:intron 0.0%
!! AATTCAATCAATTAACTTAT+CGG + chr3_2:27418063-27418082 None:intergenic 15.0%
!! ATTTATTCAATGAATCTAAA+AGG + chr3_2:27418683-27418702 None:intergenic 15.0%
!! ACTTATAGCTTATAATAAAA+TGG + chr3_2:27418845-27418864 None:intergenic 15.0%
!! AAATAAGTTAAAACAACTTA+TGG - chr3_2:27419150-27419169 Msa0401450:intron 15.0%
!! ATAAGCATTTATATGATAAA+CGG + chr3_2:27419953-27419972 None:intergenic 15.0%
!! TTAACTTAAACTTACTAAAT+AGG - chr3_2:27422108-27422127 Msa0401450:intron 15.0%
!! GTAGTGTTTAGTAAATTTAA+AGG - chr3_2:27418084-27418103 Msa0401450:CDS 20.0%
!!! TTTTTTCAATCAAGATTACA+AGG - chr3_2:27418168-27418187 Msa0401450:intron 20.0%
!!! TTTTTCAATCAAGATTACAA+GGG - chr3_2:27418169-27418188 Msa0401450:intron 20.0%
!! AGATTACACATTTCATAAAA+TGG + chr3_2:27418397-27418416 None:intergenic 20.0%
!! TTGCTTATAATAGTGATAAA+AGG - chr3_2:27418783-27418802 Msa0401450:intron 20.0%
!! TGCTTATAATAGTGATAAAA+GGG - chr3_2:27418784-27418803 Msa0401450:intron 20.0%
!!! GTTTTTAGCTTAATTTCATA+AGG + chr3_2:27418879-27418898 None:intergenic 20.0%
!! TATGAAATTAAGCTAAAAAC+TGG - chr3_2:27418879-27418898 Msa0401450:intron 20.0%
!!! AATCATTTTTAGAGTTTGTT+GGG - chr3_2:27419579-27419598 Msa0401450:intron 20.0%
!! ATAAAAACAGTTTATACTTG+AGG + chr3_2:27420171-27420190 None:intergenic 20.0%
!!! ACTGTTTTTATAATAAACGA+TGG - chr3_2:27420180-27420199 Msa0401450:intron 20.0%
!! TTAAATAAGTCAATTGAATG+CGG - chr3_2:27421084-27421103 Msa0401450:intron 20.0%
!!! TCCTGTTATATTTAAGTTAA+TGG - chr3_2:27421126-27421145 Msa0401450:intron 20.0%
!! ACCATTAACTTAAATATAAC+AGG + chr3_2:27421130-27421149 None:intergenic 20.0%
!! CAAATTAGTTATTTACATCA+TGG - chr3_2:27421204-27421223 Msa0401450:intron 20.0%
!!! TTAGTTACAATTTTGTTAGT+TGG - chr3_2:27422033-27422052 Msa0401450:intron 20.0%
!! GAATACTCATAATCTTTATA+AGG - chr3_2:27422219-27422238 Msa0401450:intron 20.0%
!!! TTTTTCAACAAAATAATCGT+AGG + chr3_2:27422267-27422286 None:intergenic 20.0%
!!! ATATCTTTACTTTTATGTCA+TGG - chr3_2:27423333-27423352 Msa0401450:exon 20.0%
!!! TATCTTTACTTTTATGTCAT+GGG - chr3_2:27423334-27423353 Msa0401450:exon 20.0%
! GTTTGATTATGTTATGAGTT+TGG - chr3_2:27417953-27417972 Msa0401450:CDS 25.0%
! TGTCTATCATTCCAATAAAA+AGG + chr3_2:27418343-27418362 None:intergenic 25.0%
!!! AATCATTTTTACAGTGAGTT+TGG - chr3_2:27418548-27418567 Msa0401450:intron 25.0%
!! AGTGATTTTCTGTTTATAAG+TGG + chr3_2:27418723-27418742 None:intergenic 25.0%
!!! TAAGCAAACAATCACTTTTT+AGG + chr3_2:27418770-27418789 None:intergenic 25.0%
! ATATAGTTATAGAGTCTGTA+CGG + chr3_2:27419251-27419270 None:intergenic 25.0%
! AATACAAAATCTCCCTTATT+TGG - chr3_2:27419474-27419493 Msa0401450:intron 25.0%
!! ATACAAAATCTCCCTTATTT+GGG - chr3_2:27419475-27419494 Msa0401450:intron 25.0%
! AACTCAAAAATTGTATTGGA+GGG - chr3_2:27419500-27419519 Msa0401450:intron 25.0%
!!! GAATCATTTTTAGAGTTTGT+TGG - chr3_2:27419578-27419597 Msa0401450:intron 25.0%
!!! AATCATTTTTAGAGTGAGTT+GGG - chr3_2:27419876-27419895 Msa0401450:intron 25.0%
!!! TTTTAAAAAAATTGGGGAAG+CGG - chr3_2:27420028-27420047 Msa0401450:intron 25.0%
!!! AGTTAGGATCATTTTTAAGT+TGG - chr3_2:27420395-27420414 Msa0401450:intron 25.0%
! CTGTTTCAAATAAACTATAC+TGG - chr3_2:27420522-27420541 Msa0401450:intron 25.0%
! TACTAACATAAACACATGTA+AGG + chr3_2:27420628-27420647 None:intergenic 25.0%
!!! TTAGAATCATTTTTGGAGTT+GGG - chr3_2:27420833-27420852 Msa0401450:intron 25.0%
! AAAACTTAATTACGTCCTTA+TGG - chr3_2:27420885-27420904 Msa0401450:intron 25.0%
!!! TTTGAAAACAACTTGTTAAC+CGG - chr3_2:27421405-27421424 Msa0401450:intron 25.0%
!! TTTTTGTGTTTTCAAACTCT+GGG + chr3_2:27421656-27421675 None:intergenic 25.0%
!! ATTTTTGTGTTTTCAAACTC+TGG + chr3_2:27421657-27421676 None:intergenic 25.0%
! ATACCCCTATATACATATAT+AGG - chr3_2:27421798-27421817 Msa0401450:intron 25.0%
! TACCCCTATATACATATATA+GGG - chr3_2:27421799-27421818 Msa0401450:intron 25.0%
! TGACCCTATATATGTATATA+GGG + chr3_2:27421805-27421824 None:intergenic 25.0%
! ATGACCCTATATATGTATAT+AGG + chr3_2:27421806-27421825 None:intergenic 25.0%
!! CTTTTACAAGCTAAACTAAT+TGG + chr3_2:27422061-27422080 None:intergenic 25.0%
! CTTAAACTTACTAAATAGGT+TGG - chr3_2:27422112-27422131 Msa0401450:intron 25.0%
!!! TACTAAATAGGTTGGTTTAT+TGG - chr3_2:27422120-27422139 Msa0401450:intron 25.0%
! AAATAATCGTAGGAAAAGAA+AGG + chr3_2:27422257-27422276 None:intergenic 25.0%
!!! ATCTTTACTTTTATGTCATG+GGG - chr3_2:27423335-27423354 Msa0401450:exon 25.0%
!!! TTTGATTTTAGGATTTGGGT+GGG + chr3_2:27417580-27417599 None:intergenic 30.0%
!!! TTTTGATTTTAGGATTTGGG+TGG + chr3_2:27417581-27417600 None:intergenic 30.0%
!!! GGGTTTTGATTTTAGGATTT+GGG + chr3_2:27417584-27417603 None:intergenic 30.0%
!!! AGGGTTTTGATTTTAGGATT+TGG + chr3_2:27417585-27417604 None:intergenic 30.0%
!! GGATTTGATTTGGAGATTTA+GGG + chr3_2:27417610-27417629 None:intergenic 30.0%
!! AGGATTTGATTTGGAGATTT+AGG + chr3_2:27417611-27417630 None:intergenic 30.0%
TTACTTAGTTATCTCGAGTT+CGG - chr3_2:27417981-27418000 Msa0401450:CDS 30.0%
CAAGATTACAAGGGTAAAAT+TGG - chr3_2:27418178-27418197 Msa0401450:intron 30.0%
!! AAAGTGTCTTGCCTTTTTAT+TGG - chr3_2:27418329-27418348 Msa0401450:intron 30.0%
TTTATTGGAATGATAGACAC+AGG - chr3_2:27418344-27418363 Msa0401450:intron 30.0%
TGCTTATAAAAGTGACTGAA+GGG + chr3_2:27418652-27418671 None:intergenic 30.0%
TTGCTTATAAAAGTGACTGA+AGG + chr3_2:27418653-27418672 None:intergenic 30.0%
! ATTTTCTGTTTATAAGTGGC+AGG + chr3_2:27418719-27418738 None:intergenic 30.0%
TCAATTAAGTCAATCCAAAC+AGG - chr3_2:27418931-27418950 Msa0401450:intron 30.0%
!!! TTGTTTTTATAAGCTGTCCT+TGG - chr3_2:27419117-27419136 Msa0401450:intron 30.0%
!! TGTTTTTATAAGCTGTCCTT+GGG - chr3_2:27419118-27419137 Msa0401450:intron 30.0%
! CTACTAAGATAAGCACTTTT+GGG + chr3_2:27419208-27419227 None:intergenic 30.0%
! TCTACTAAGATAAGCACTTT+TGG + chr3_2:27419209-27419228 None:intergenic 30.0%
GAACTAACTACTAACAAACT+TGG + chr3_2:27419337-27419356 None:intergenic 30.0%
! TTGTTAGTAGTTAGTTCTTC+AGG - chr3_2:27419340-27419359 Msa0401450:intron 30.0%
! TGTTAGTAGTTAGTTCTTCA+GGG - chr3_2:27419341-27419360 Msa0401450:intron 30.0%
TGGAGTAAGTGAAAGAATTT+AGG - chr3_2:27419409-27419428 Msa0401450:intron 30.0%
GGAGTAAGTGAAAGAATTTA+GGG - chr3_2:27419410-27419429 Msa0401450:intron 30.0%
! TACAAAATCTCCCTTATTTG+GGG - chr3_2:27419476-27419495 Msa0401450:intron 30.0%
GAACTCAAAAATTGTATTGG+AGG - chr3_2:27419499-27419518 Msa0401450:intron 30.0%
ACTCAAAAATTGTATTGGAG+GGG - chr3_2:27419501-27419520 Msa0401450:intron 30.0%
TTTATTACTATGACCCTGTT+TGG - chr3_2:27419604-27419623 Msa0401450:intron 30.0%
TTATTACTATGACCCTGTTT+GGG - chr3_2:27419605-27419624 Msa0401450:intron 30.0%
GACTGCTTATGCTATTAAAA+AGG - chr3_2:27419642-27419661 Msa0401450:intron 30.0%
!! GCTTATTTTCATAAACACTC+CGG + chr3_2:27419731-27419750 None:intergenic 30.0%
AATAAGCCGAAAACAACTTA+TGG - chr3_2:27419744-27419763 Msa0401450:intron 30.0%
!! ACATGTCCATAAGTTGTTTT+CGG + chr3_2:27419753-27419772 None:intergenic 30.0%
GTCAATTTGTACGAACTTAT+AGG - chr3_2:27419841-27419860 Msa0401450:intron 30.0%
!!! GAATCATTTTTAGAGTGAGT+TGG - chr3_2:27419875-27419894 Msa0401450:intron 30.0%
TGTTAATTAAAGTGCACTAG+TGG - chr3_2:27420058-27420077 Msa0401450:intron 30.0%
GCATCAAGTGATAAATTAGT+GGG + chr3_2:27420293-27420312 None:intergenic 30.0%
AAAGTTGTAACTAAATACCC+TGG + chr3_2:27420363-27420382 None:intergenic 30.0%
! CTTTAGTGTTTGAGATAGTT+AGG - chr3_2:27420379-27420398 Msa0401450:intron 30.0%
ATCTGTAACAGCTATTTACA+AGG + chr3_2:27420681-27420700 None:intergenic 30.0%
! GTCAACGTTATAAGTTTGTT+TGG - chr3_2:27420750-27420769 Msa0401450:intron 30.0%
! GAGACACTTAGAATCATTTT+TGG - chr3_2:27420826-27420845 Msa0401450:intron 30.0%
!!! CTTAGAATCATTTTTGGAGT+TGG - chr3_2:27420832-27420851 Msa0401450:intron 30.0%
!! CAGTTTGACTTGTTTACTAT+AGG + chr3_2:27420947-27420966 None:intergenic 30.0%
AAGCTTTCTTAGATAGCTTA+TGG - chr3_2:27420983-27421002 Msa0401450:intron 30.0%
GATAAGCTGAAAACAACTTA+TGG - chr3_2:27421007-27421026 Msa0401450:intron 30.0%
AGCAACGATAATGATTTCAA+CGG + chr3_2:27421258-27421277 None:intergenic 30.0%
!!! ACTAACTTGGGATTCTTTTT+TGG + chr3_2:27421284-27421303 None:intergenic 30.0%
AAAAAGAATCCCAAGTTAGT+TGG - chr3_2:27421284-27421303 Msa0401450:intron 30.0%
AAAAGAATCCCAAGTTAGTT+GGG - chr3_2:27421285-27421304 Msa0401450:intron 30.0%
!! ACAAGTTGTTTTCAAACTCT+GGG + chr3_2:27421401-27421420 None:intergenic 30.0%
!! AACAAGTTGTTTTCAAACTC+TGG + chr3_2:27421402-27421421 None:intergenic 30.0%
!! TTGAAAACAACTTGTTAACC+GGG - chr3_2:27421406-27421425 Msa0401450:intron 30.0%
! GTTTTCTTACCTCGTAAATA+TGG + chr3_2:27421445-27421464 None:intergenic 30.0%
GTTGAACTTGAATAAGAGAA+TGG - chr3_2:27421555-27421574 Msa0401450:intron 30.0%
GACCCTATATATGTATATAG+GGG + chr3_2:27421804-27421823 None:intergenic 30.0%
TCTGCAATTGTATATCTTCT+GGG - chr3_2:27421863-27421882 Msa0401450:intron 30.0%
!! GGTTGGTTTATTGGTATTTA+TGG - chr3_2:27422129-27422148 Msa0401450:intron 30.0%
TATAAACAGTTGAGCTGAAA+TGG - chr3_2:27422172-27422191 Msa0401450:intron 30.0%
TTCAATTAGCTGTGATACTT+AGG - chr3_2:27422303-27422322 Msa0401450:intron 30.0%
AGAGCAGATAAGTTGTAAAA+AGG + chr3_2:27422344-27422363 None:intergenic 30.0%
!! CAGAGTTGATTTTCACTAAT+GGG - chr3_2:27422437-27422456 Msa0401450:intron 30.0%
TGTACAAATTAAAAGCTGCA+CGG + chr3_2:27422854-27422873 None:intergenic 30.0%
! TAATTTGTACACAGAGACAT+TGG - chr3_2:27422863-27422882 Msa0401450:intron 30.0%
AATTTGTACACAGAGACATT+GGG - chr3_2:27422864-27422883 Msa0401450:intron 30.0%
AGAAACTGGCAAAAAAAATG+TGG + chr3_2:27423087-27423106 None:intergenic 30.0%
AACAAAGACACTTAAGAAAC+TGG + chr3_2:27423101-27423120 None:intergenic 30.0%
CTAGTTTGATATTGACAAGA+TGG - chr3_2:27423146-27423165 Msa0401450:CDS 30.0%
CATGTCATGATACTTGATTA+TGG - chr3_2:27423300-27423319 Msa0401450:CDS 30.0%
ATGTTAATTCAGAGAGAAAG+AGG - chr3_2:27423371-27423390 Msa0401450:five_prime_UTR 30.0%
!!! TTGATTTTAGGATTTGGGTG+GGG + chr3_2:27417579-27417598 None:intergenic 35.0%
!!! AGGGTTAGGGTTTTGATTTT+AGG + chr3_2:27417591-27417610 None:intergenic 35.0%
! GATTTGGAGATTTAGGGTTA+GGG + chr3_2:27417604-27417623 None:intergenic 35.0%
! TGATTTGGAGATTTAGGGTT+AGG + chr3_2:27417605-27417624 None:intergenic 35.0%
TACTTCATCTGGTAATTCTC+TGG + chr3_2:27417716-27417735 None:intergenic 35.0%
GGTAGAGATAATACTTCATC+TGG + chr3_2:27417727-27417746 None:intergenic 35.0%
ATCTCTACCATATCCTTTCA+TGG - chr3_2:27417738-27417757 Msa0401450:three_prime_UTR 35.0%
TACGTTGCTGAAGATTACAA+CGG - chr3_2:27417773-27417792 Msa0401450:three_prime_UTR 35.0%
ATAAGCCCATGAGAAATTGA+CGG - chr3_2:27418253-27418272 Msa0401450:intron 35.0%
AGAAATTGACGGTTACCAAA+CGG - chr3_2:27418264-27418283 Msa0401450:intron 35.0%
TTGACTAGAAAAGATCCGTT+TGG + chr3_2:27418282-27418301 None:intergenic 35.0%
CTTAATTTCATAAGGTCTGC+AGG + chr3_2:27418871-27418890 None:intergenic 35.0%
ACAGATAGTTACAACCTGTT+TGG + chr3_2:27418948-27418967 None:intergenic 35.0%
CAGGTTGTAACTATCTGTTA+CGG - chr3_2:27418950-27418969 Msa0401450:intron 35.0%
!! GAGGATTTTGGAGAAAAGTA+TGG - chr3_2:27419389-27419408 Msa0401450:intron 35.0%
! AGTGAAAGAATTTAGGGCTT+TGG - chr3_2:27419416-27419435 Msa0401450:intron 35.0%
! GTGAAAGAATTTAGGGCTTT+GGG - chr3_2:27419417-27419436 Msa0401450:intron 35.0%
! ACAAAATCTCCCTTATTTGG+GGG - chr3_2:27419477-27419496 Msa0401450:intron 35.0%
!!! TTTTGAGTTCCCCCAAATAA+GGG + chr3_2:27419489-27419508 None:intergenic 35.0%
!!! TTTTTGAGTTCCCCCAAATA+AGG + chr3_2:27419490-27419509 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG - chr3_2:27419496-27419515 Msa0401450:intron 35.0%
CTCAAAAATTGTATTGGAGG+GGG - chr3_2:27419502-27419521 Msa0401450:intron 35.0%
ATTGTTTCAGTAAGCCATAC+CGG - chr3_2:27419709-27419728 Msa0401450:intron 35.0%
! TTTTCATAAACACTCCGGTA+TGG + chr3_2:27419726-27419745 None:intergenic 35.0%
AGCTTAATCTTGTAGCATCA+AGG + chr3_2:27420123-27420142 None:intergenic 35.0%
! AGATTAGTTGGACCTATTAG+TGG - chr3_2:27420260-27420279 Msa0401450:intron 35.0%
GGCATCAAGTGATAAATTAG+TGG + chr3_2:27420294-27420313 None:intergenic 35.0%
!! ATGCCTATTTTTCTCATGAG+TGG - chr3_2:27420309-27420328 Msa0401450:intron 35.0%
TGTCCACTCATGAGAAAAAT+AGG + chr3_2:27420315-27420334 None:intergenic 35.0%
ATGAGTGGACAGTAGATAAA+TGG - chr3_2:27420324-27420343 Msa0401450:intron 35.0%
GCATAAGCACTTAATTAAGC+TGG + chr3_2:27420455-27420474 None:intergenic 35.0%
! AACGTTGACAAACTTGTTCA+TGG + chr3_2:27420739-27420758 None:intergenic 35.0%
CTTGTGATATAGACGATGTT+TGG - chr3_2:27420858-27420877 Msa0401450:intron 35.0%
ATAAGCACGTTTATGACTAG+GGG + chr3_2:27420912-27420931 None:intergenic 35.0%
CATAAGCACGTTTATGACTA+GGG + chr3_2:27420913-27420932 None:intergenic 35.0%
ACATAAGCACGTTTATGACT+AGG + chr3_2:27420914-27420933 None:intergenic 35.0%
AGACTATTTGAGAGAGCTTA+TGG + chr3_2:27421051-27421070 None:intergenic 35.0%
CGTAAATATGGAGAAACAGT+TGG + chr3_2:27421433-27421452 None:intergenic 35.0%
! ACTGTTTCTCCATATTTACG+AGG - chr3_2:27421433-27421452 Msa0401450:intron 35.0%
! TCTGGTGTTAAAAGTGTATG+TGG + chr3_2:27421478-27421497 None:intergenic 35.0%
GAAAAACAACCGGATTATCT+TGG - chr3_2:27421531-27421550 Msa0401450:intron 35.0%
AGTTCAACACCAAGATAATC+CGG + chr3_2:27421543-27421562 None:intergenic 35.0%
!!! GGAATGCATTTTTAGGTTGT+TGG + chr3_2:27421722-27421741 None:intergenic 35.0%
CTCTGCAATTGTATATCTTC+TGG - chr3_2:27421862-27421881 Msa0401450:intron 35.0%
! TAAAGTACCAGAGTCTTATG+AGG - chr3_2:27421897-27421916 Msa0401450:intron 35.0%
GATTCTGTTGAAAGTCTGTT+AGG - chr3_2:27421928-27421947 Msa0401450:intron 35.0%
CTTATCTGCTCTTAATCTCA+TGG - chr3_2:27422352-27422371 Msa0401450:intron 35.0%
ATGAAAACTTGTGGCGATTA+TGG - chr3_2:27422376-27422395 Msa0401450:intron 35.0%
!! GCAGAGTTGATTTTCACTAA+TGG - chr3_2:27422436-27422455 Msa0401450:intron 35.0%
! TGATTTTCACTAATGGGAGA+AGG - chr3_2:27422443-27422462 Msa0401450:intron 35.0%
AATCGAATTGTGGTATACTG+AGG + chr3_2:27422559-27422578 None:intergenic 35.0%
AGTCTAACTGAATCGAATTG+TGG + chr3_2:27422569-27422588 None:intergenic 35.0%
ACAGATAGAATTGCTGAACT+AGG + chr3_2:27422688-27422707 None:intergenic 35.0%
AAGTGTGTGCTTTCTTGTAA+TGG - chr3_2:27422736-27422755 Msa0401450:intron 35.0%
AGTGTGTGCTTTCTTGTAAT+GGG - chr3_2:27422737-27422756 Msa0401450:intron 35.0%
ATTTGTACACAGAGACATTG+GGG - chr3_2:27422865-27422884 Msa0401450:intron 35.0%
ACTGGCAAAAAAAATGTGGT+GGG + chr3_2:27423083-27423102 None:intergenic 35.0%
AACTGGCAAAAAAAATGTGG+TGG + chr3_2:27423084-27423103 None:intergenic 35.0%
!! ACGTAACAGAGAGCATTATT+CGG + chr3_2:27423182-27423201 None:intergenic 35.0%
ATGACATGATGAACCACAAA+CGG + chr3_2:27423288-27423307 None:intergenic 35.0%
TGGGGAAATCGAATGTTGAA+GGG + chr3_2:27417561-27417580 None:intergenic 40.0%
GTGGAGTAGAGGATTTGATT+TGG + chr3_2:27417620-27417639 None:intergenic 40.0%
AATCCTCTACTCCACAACAA+TGG - chr3_2:27417625-27417644 Msa0401450:three_prime_UTR 40.0%
ACGTTGCTGAAGATTACAAC+GGG - chr3_2:27417774-27417793 Msa0401450:three_prime_UTR 40.0%
ATTACAACGGGCGTATTGTT+GGG - chr3_2:27417786-27417805 Msa0401450:three_prime_UTR 40.0%
! TTACTTCTCTTGCTGTGTTG+AGG - chr3_2:27417858-27417877 Msa0401450:three_prime_UTR 40.0%
AGAATGCTATGGAACAGGTT+TGG - chr3_2:27417927-27417946 Msa0401450:CDS 40.0%
GGTAACCGTCAATTTCTCAT+GGG + chr3_2:27418261-27418280 None:intergenic 40.0%
TGGTAACCGTCAATTTCTCA+TGG + chr3_2:27418262-27418281 None:intergenic 40.0%
ATTGGAATGATAGACACAGG+TGG - chr3_2:27418347-27418366 Msa0401450:intron 40.0%
TGCTCAGAATGCTATGGAAA+AGG - chr3_2:27418451-27418470 Msa0401450:intron 40.0%
! GAGTTTGGAGTTTGTGACTA+AGG - chr3_2:27418563-27418582 Msa0401450:intron 40.0%
TTTGTGACTAAGGCTCTGTT+TGG - chr3_2:27418573-27418592 Msa0401450:intron 40.0%
CTTATTTCCATAAGCTCCCA+AGG + chr3_2:27419137-27419156 None:intergenic 40.0%
TTGGAAAGCAACCTATTCCA+TGG + chr3_2:27419318-27419337 None:intergenic 40.0%
TAGTTCTTCAGGGCATGTTT+AGG - chr3_2:27419351-27419370 Msa0401450:intron 40.0%
GCATGTTTAGGAGTTTGGAA+TGG - chr3_2:27419363-27419382 Msa0401450:intron 40.0%
! TGTTTAGGAGTTTGGAATGG+AGG - chr3_2:27419366-27419385 Msa0401450:intron 40.0%
! GTTTAGGAGTTTGGAATGGA+GGG - chr3_2:27419367-27419386 Msa0401450:intron 40.0%
!! AAAGAATTTAGGGCTTTGGG+TGG - chr3_2:27419420-27419439 Msa0401450:intron 40.0%
! ATTGTATTGGAGGGGGATTT+TGG - chr3_2:27419509-27419528 Msa0401450:intron 40.0%
CTAAGCTGATTACCCAAACA+GGG + chr3_2:27419620-27419639 None:intergenic 40.0%
ACTAAGCTGATTACCCAAAC+AGG + chr3_2:27419621-27419640 None:intergenic 40.0%
CACTAGTGGCCAATTTAGAA+TGG - chr3_2:27420072-27420091 Msa0401450:intron 40.0%
CTGTAAATGGAGGTAGATTC+TGG + chr3_2:27420216-27420235 None:intergenic 40.0%
CTTTCTCTCTGGACTGTAAA+TGG + chr3_2:27420229-27420248 None:intergenic 40.0%
GACACATGTGGAAGATTAGT+TGG - chr3_2:27420248-27420267 Msa0401450:intron 40.0%
GTAACTAAATACCCTGGATC+TGG + chr3_2:27420357-27420376 None:intergenic 40.0%
TTAGTGACTATGACCCTGTT+TGG - chr3_2:27420425-27420444 Msa0401450:intron 40.0%
TAGTGACTATGACCCTGTTT+GGG - chr3_2:27420426-27420445 Msa0401450:intron 40.0%
TTAAGCTGGTTACCCAAACA+GGG + chr3_2:27420441-27420460 None:intergenic 40.0%
ATTAAGCTGGTTACCCAAAC+AGG + chr3_2:27420442-27420461 None:intergenic 40.0%
GATCTTTATGCTGAAGCTCA+TGG - chr3_2:27420698-27420717 Msa0401450:intron 40.0%
! CTTGTTCATGGCATTTTGAG+CGG + chr3_2:27420727-27420746 None:intergenic 40.0%
TAAGCACGTTTATGACTAGG+GGG + chr3_2:27420911-27420930 None:intergenic 40.0%
! AACCTGTTCCATAGCGTTTT+GGG + chr3_2:27421158-27421177 None:intergenic 40.0%
! AAACCTGTTCCATAGCGTTT+TGG + chr3_2:27421159-27421178 None:intergenic 40.0%
TTGCGACTGTAACTCTGTTA+CGG - chr3_2:27421311-27421330 Msa0401450:intron 40.0%
AAAGTGTATGTGGAGGAACA+GGG + chr3_2:27421468-27421487 None:intergenic 40.0%
! AAAAGTGTATGTGGAGGAAC+AGG + chr3_2:27421469-27421488 None:intergenic 40.0%
! GGTGTTAAAAGTGTATGTGG+AGG + chr3_2:27421475-27421494 None:intergenic 40.0%
! GTCGAACTGGTTTACAAGTT+GGG + chr3_2:27421501-27421520 None:intergenic 40.0%
CAGGATACGTGAAAAACAAC+CGG - chr3_2:27421521-27421540 Msa0401450:intron 40.0%
AGAGAATGGCATACTGAATG+AGG - chr3_2:27421569-27421588 Msa0401450:intron 40.0%
!! TCAAACTCTGGGATCTCTTT+AGG + chr3_2:27421390-27421409 None:intergenic 40.0%
! TCACAGGGGAATGCATTTTT+AGG + chr3_2:27421729-27421748 None:intergenic 40.0%
TGCATTCCCCTGTGATATAT+TGG - chr3_2:27421734-27421753 Msa0401450:intron 40.0%
! GATATATTGGCACGGTCTTT+TGG - chr3_2:27421747-27421766 Msa0401450:intron 40.0%
CCAATAACCTCATAAGACTC+TGG + chr3_2:27421907-27421926 None:intergenic 40.0%
! CCAGAGTCTTATGAGGTTAT+TGG - chr3_2:27421904-27421923 Msa0401450:intron 40.0%
TGTGATACTTAGGATGCGTT+TGG - chr3_2:27422313-27422332 Msa0401450:intron 40.0%
TCTCATGGCATGAAAACTTG+TGG - chr3_2:27422367-27422386 Msa0401450:intron 40.0%
GTGTGTGCTTTCTTGTAATG+GGG - chr3_2:27422738-27422757 Msa0401450:intron 40.0%
GTACAAGATTCATGATGTGG+AGG - chr3_2:27422887-27422906 Msa0401450:intron 40.0%
GACATGAGAAAGCAACTCAA+GGG - chr3_2:27422942-27422961 Msa0401450:intron 40.0%
ACATGAGAAAGCAACTCAAG+GGG - chr3_2:27422943-27422962 Msa0401450:intron 40.0%
AGGAAATTGCACACACAATC+AGG + chr3_2:27423057-27423076 None:intergenic 40.0%
! AAAAAAAATGTGGTGGGGGT+AGG + chr3_2:27423077-27423096 None:intergenic 40.0%
TGGCAAAAAAAATGTGGTGG+GGG + chr3_2:27423081-27423100 None:intergenic 40.0%
CTGGCAAAAAAAATGTGGTG+GGG + chr3_2:27423082-27423101 None:intergenic 40.0%
TAAATGAATGCACCCGTTTG+TGG - chr3_2:27423272-27423291 Msa0401450:CDS 40.0%
TGACATGATGAACCACAAAC+GGG + chr3_2:27423287-27423306 None:intergenic 40.0%
GTGGGGAAATCGAATGTTGA+AGG + chr3_2:27417562-27417581 None:intergenic 45.0%
ACACCATTGTTGTGGAGTAG+AGG + chr3_2:27417631-27417650 None:intergenic 45.0%
TCAGCAACGTAAAGAAGCTG+CGG + chr3_2:27417764-27417783 None:intergenic 45.0%
GATTACAACGGGCGTATTGT+TGG - chr3_2:27417785-27417804 Msa0401450:three_prime_UTR 45.0%
TGGGTATGTTCTTGCGAAGA+TGG - chr3_2:27417805-27417824 Msa0401450:three_prime_UTR 45.0%
TGTTCTTGCGAAGATGGAAG+AGG - chr3_2:27417811-27417830 Msa0401450:three_prime_UTR 45.0%
TTGCTGTGTTGAGGACTCAT+CGG - chr3_2:27417867-27417886 Msa0401450:three_prime_UTR 45.0%
TTGAGGACTCATCGGAAGTT+GGG - chr3_2:27417875-27417894 Msa0401450:three_prime_UTR 45.0%
AGACACAGGTGGAAGATTGT+AGG - chr3_2:27418358-27418377 Msa0401450:intron 45.0%
TTCTGAGCAGCAGTCATAAG+TGG + chr3_2:27418440-27418459 None:intergenic 45.0%
GGACTGTTTGAGAGAGCTTA+TGG + chr3_2:27419187-27419206 None:intergenic 45.0%
TTCCATGGCGATTTGAGCAT+CGG + chr3_2:27419303-27419322 None:intergenic 45.0%
TGCTCAAATCGCCATGGAAT+AGG - chr3_2:27419304-27419323 Msa0401450:intron 45.0%
TCAGGGCATGTTTAGGAGTT+TGG - chr3_2:27419358-27419377 Msa0401450:intron 45.0%
! TTGGAATGGAGGGAGGATTT+TGG - chr3_2:27419377-27419396 Msa0401450:intron 45.0%
!! ATTTAGGGCTTTGGGTGGTA+AGG - chr3_2:27419425-27419444 Msa0401450:intron 45.0%
!! TTTAGGGCTTTGGGTGGTAA+GGG - chr3_2:27419426-27419445 Msa0401450:intron 45.0%
TCCAAACAACGCGTCATAGT+CGG + chr3_2:27419907-27419926 None:intergenic 45.0%
! TGGCCAATTTAGAATGGCAC+TGG - chr3_2:27420078-27420097 Msa0401450:intron 45.0%
! CCTCCAGTGCCATTCTAAAT+TGG + chr3_2:27420084-27420103 None:intergenic 45.0%
! CCAATTTAGAATGGCACTGG+AGG - chr3_2:27420081-27420100 Msa0401450:intron 45.0%
TCTCTCTGGACTGTAAATGG+AGG + chr3_2:27420226-27420245 None:intergenic 45.0%
TCCAGAGAGAAAGACACATG+TGG - chr3_2:27420236-27420255 Msa0401450:intron 45.0%
TCCACATGTGTCTTTCTCTC+TGG + chr3_2:27420240-27420259 None:intergenic 45.0%
GTGGGACTCATTCCACTAAT+AGG + chr3_2:27420275-27420294 None:intergenic 45.0%
AATGGAGCAATTCCAGATCC+AGG - chr3_2:27420342-27420361 Msa0401450:intron 45.0%
ATGGAGCAATTCCAGATCCA+GGG - chr3_2:27420343-27420362 Msa0401450:intron 45.0%
!! AGGCTGTTTGAGAGAGCATT+TGG + chr3_2:27420608-27420627 None:intergenic 45.0%
CTTTATGCTGAAGCTCATGG+CGG - chr3_2:27420701-27420720 Msa0401450:intron 45.0%
TTTATGACTAGGGGGCCATA+AGG + chr3_2:27420903-27420922 None:intergenic 45.0%
CGCAAGTTCCCAACTAACTT+GGG + chr3_2:27421296-27421315 None:intergenic 45.0%
TCGCAAGTTCCCAACTAACT+TGG + chr3_2:27421297-27421316 None:intergenic 45.0%
TATGGAGAAACAGTTGGACC+CGG + chr3_2:27421427-27421446 None:intergenic 45.0%
AAGTGTATGTGGAGGAACAG+GGG + chr3_2:27421467-27421486 None:intergenic 45.0%
! ACTGGTTTACAAGTTGGGTC+TGG + chr3_2:27421496-27421515 None:intergenic 45.0%
! GGTCGAACTGGTTTACAAGT+TGG + chr3_2:27421502-27421521 None:intergenic 45.0%
ACTTGTAAACCAGTTCGACC+AGG - chr3_2:27421502-27421521 Msa0401450:intron 45.0%
!!! CGGTTGTTTTTCACGTATCC+TGG + chr3_2:27421523-27421542 None:intergenic 45.0%
TGGCATACTGAATGAGGCAA+AGG - chr3_2:27421575-27421594 Msa0401450:intron 45.0%
! TTACGAGGGTGTGAAATGCA+TGG + chr3_2:27421603-27421622 None:intergenic 45.0%
CTTCCAAGGTGGTATTACGA+GGG + chr3_2:27421617-27421636 None:intergenic 45.0%
TTTAGGTGTAGCTTCCAAGG+TGG + chr3_2:27421628-27421647 None:intergenic 45.0%
CTCTTTAGGTGTAGCTTCCA+AGG + chr3_2:27421631-27421650 None:intergenic 45.0%
TCCCCTGTGATATATTGGCA+CGG - chr3_2:27421739-27421758 Msa0401450:intron 45.0%
ACCGTGCCAATATATCACAG+GGG + chr3_2:27421743-27421762 None:intergenic 45.0%
GACCGTGCCAATATATCACA+GGG + chr3_2:27421744-27421763 None:intergenic 45.0%
AGACCGTGCCAATATATCAC+AGG + chr3_2:27421745-27421764 None:intergenic 45.0%
ACTGAGGCAACCAATTACAG+AGG + chr3_2:27422543-27422562 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGAAT+CGG + chr3_2:27422605-27422624 None:intergenic 45.0%
! TGCTTTCTTGTAATGGGGCT+TGG - chr3_2:27422743-27422762 Msa0401450:intron 45.0%
ACTGTTACTCTGTCTGACAC+AGG - chr3_2:27422785-27422804 Msa0401450:intron 45.0%
GGGGTACAAGATTCATGATG+TGG - chr3_2:27422884-27422903 Msa0401450:intron 45.0%
CTCACCATCGGCATAATACT+TGG + chr3_2:27422913-27422932 None:intergenic 45.0%
CAAGTATTATGCCGATGGTG+AGG - chr3_2:27422911-27422930 Msa0401450:intron 45.0%
CGACATGAGAAAGCAACTCA+AGG - chr3_2:27422941-27422960 Msa0401450:intron 45.0%
ATGTTGTTCTGGTGAGACCA+AGG - chr3_2:27423019-27423038 Msa0401450:intron 45.0%
TGTTGTTCTGGTGAGACCAA+GGG - chr3_2:27423020-27423039 Msa0401450:intron 45.0%
!! AAATAAAATAATATAAAAAC+AGG + chr3_2:27420011-27420030 None:intergenic 5.0%
!!! ATTTTATTTTAAAAAAATTG+GGG - chr3_2:27420022-27420041 Msa0401450:intron 5.0%
GCGTATGCACACCATTGTTG+TGG + chr3_2:27417639-27417658 None:intergenic 50.0%
CATCGCGAGTAGGTCGTTTA+CGG + chr3_2:27417669-27417688 None:intergenic 50.0%
AAAGAAGCTGCGGCCATGAA+AGG + chr3_2:27417754-27417773 None:intergenic 50.0%
GAGGAGACGAATGAGTGTCA+TGG - chr3_2:27417830-27417849 Msa0401450:three_prime_UTR 50.0%
GTTGAGGACTCATCGGAAGT+TGG - chr3_2:27417874-27417893 Msa0401450:three_prime_UTR 50.0%
TGAGGACTCATCGGAAGTTG+GGG - chr3_2:27417876-27417895 Msa0401450:three_prime_UTR 50.0%
TGCGCAGAATGCTATGGAAC+AGG - chr3_2:27417922-27417941 Msa0401450:CDS 50.0%
TCGAGTTCGGATTTGCATCG+CGG - chr3_2:27417994-27418013 Msa0401450:CDS 50.0%
GACTGCTGCTCAGAATGCTA+TGG - chr3_2:27418445-27418464 Msa0401450:intron 50.0%
AAGCTGTCCTTGGGAGCTTA+TGG - chr3_2:27419127-27419146 Msa0401450:intron 50.0%
!! GGCGATTTGAGCATCGGAAT+GGG + chr3_2:27419297-27419316 None:intergenic 50.0%
!! TGGCGATTTGAGCATCGGAA+TGG + chr3_2:27419298-27419317 None:intergenic 50.0%
TTCCGATGCTCAAATCGCCA+TGG - chr3_2:27419298-27419317 Msa0401450:intron 50.0%
! TAGGAGTTTGGAATGGAGGG+AGG - chr3_2:27419370-27419389 Msa0401450:intron 50.0%
TCCGACTATGACGCGTTGTT+TGG - chr3_2:27419903-27419922 Msa0401450:intron 50.0%
!! CTGTTCCATAGCGTTTTGGG+TGG + chr3_2:27421155-27421174 None:intergenic 50.0%
CACCCAAAACGCTATGGAAC+AGG - chr3_2:27421153-27421172 Msa0401450:intron 50.0%
TTCACGTATCCTGGTCGAAC+TGG + chr3_2:27421514-27421533 None:intergenic 50.0%
ACACCCTCGTAATACCACCT+TGG - chr3_2:27421611-27421630 Msa0401450:intron 50.0%
GCTTCCAAGGTGGTATTACG+AGG + chr3_2:27421618-27421637 None:intergenic 50.0%
CTCTGTCTGACACAGGTGTT+TGG - chr3_2:27422792-27422811 Msa0401450:intron 50.0%
GAGGCCAAGTATTATGCCGA+TGG - chr3_2:27422906-27422925 Msa0401450:intron 50.0%
GTCGTAAGCATCCTCACCAT+CGG + chr3_2:27422925-27422944 None:intergenic 50.0%
! GGTGATGATGATGCTGTGGT+GGG + chr3_2:27422980-27422999 None:intergenic 50.0%
! TGGTGATGATGATGCTGTGG+TGG + chr3_2:27422981-27423000 None:intergenic 50.0%
! TGGTGGTGATGATGATGCTG+TGG + chr3_2:27422984-27423003 None:intergenic 50.0%
GTTGTTCTGGTGAGACCAAG+GGG - chr3_2:27423021-27423040 Msa0401450:intron 50.0%
! TCAGGCTTTAGCATTCCCCT+TGG + chr3_2:27423039-27423058 None:intergenic 50.0%
GCTGCGGCCATGAAAGGATA+TGG + chr3_2:27417748-27417767 None:intergenic 55.0%
GACTGCTGCGCAGAATGCTA+TGG - chr3_2:27417916-27417935 Msa0401450:exon 55.0%
CTTTGGGTGGTAAGGGCTCT+GGG - chr3_2:27419433-27419452 Msa0401450:intron 55.0%
TTTGGGTGGTAAGGGCTCTG+GGG - chr3_2:27419434-27419453 Msa0401450:intron 55.0%
CATCATCACCACCACCACCA+TGG - chr3_2:27422990-27423009 Msa0401450:intron 55.0%
AACAACATCCACCGCCATGG+TGG + chr3_2:27423007-27423026 None:intergenic 55.0%
CAGAACAACATCCACCGCCA+TGG + chr3_2:27423010-27423029 None:intergenic 55.0%
CATGGCGGTGGATGTTGTTC+TGG - chr3_2:27423008-27423027 Msa0401450:intron 55.0%
CGCGAGTAGGTCGTTTACGG+TGG + chr3_2:27417666-27417685 None:intergenic 60.0%
TGCACGCTTGCATCGCGAGT+AGG + chr3_2:27417679-27417698 None:intergenic 60.0%
! GCTTTGGGTGGTAAGGGCTC+TGG - chr3_2:27419432-27419451 Msa0401450:intron 60.0%
GGTCGCCACCCAAAACGCTA+TGG - chr3_2:27421147-27421166 Msa0401450:intron 60.0%
! AGTACGTGTCGCTGCACGTC+AGG - chr3_2:27422820-27422839 Msa0401450:intron 60.0%
CATCACCACCACCACCATGG+CGG - chr3_2:27422993-27423012 Msa0401450:intron 60.0%
AACATCCACCGCCATGGTGG+TGG + chr3_2:27423004-27423023 None:intergenic 60.0%
!! ATCCACCGCCATGGTGGTGG+TGG + chr3_2:27423001-27423020 None:intergenic 65.0%
CACCACCACCACCATGGCGG+TGG - chr3_2:27422996-27423015 Msa0401450:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 27417539 27423441 27417539 ID=Msa0401450;Name=Msa0401450
chr3_2 mRNA 27417539 27423441 27417539 ID=Msa0401450-mRNA-1;Parent=Msa0401450;Name=Msa0401450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=105|1|1|1|1|1|2|383|183
chr3_2 exon 27417539 27418173 27417539 ID=Msa0401450-mRNA-1:exon:5684;Parent=Msa0401450-mRNA-1
chr3_2 exon 27423037 27423441 27423037 ID=Msa0401450-mRNA-1:exon:5683;Parent=Msa0401450-mRNA-1
chr3_2 five_prime_UTR 27423337 27423441 27423337 ID=Msa0401450-mRNA-1:five_prime_utr;Parent=Msa0401450-mRNA-1
chr3_2 CDS 27423037 27423336 27423037 ID=Msa0401450-mRNA-1:cds;Parent=Msa0401450-mRNA-1
chr3_2 CDS 27417922 27418173 27417922 ID=Msa0401450-mRNA-1:cds;Parent=Msa0401450-mRNA-1
chr3_2 three_prime_UTR 27417539 27417921 27417539 ID=Msa0401450-mRNA-1:three_prime_utr;Parent=Msa0401450-mRNA-1
Gene Sequence

>Msa0401450

ATGGTGTGCATACGCAAAGCCACCGTAAACGACCTACTCGCGATGCAAGCGTGCAATCTCTTCTGCTTACCAGAGAATTACCAGATGAAGTATTATCTCTACCATATCCTTTCATGGCCGCAGCTTCTTTACGTTGCTGAAGATTACAACGGGCGTATTGTTGGGTATGTTCTTGCGAAGATGGAAGAGGAGACGAATGAGTGTCATGGTCATATTACTTCTCTTGCTGTGTTGAGGACTCATCGGAAGTTGGGGATTGCTACTAAGCTTATGACTGCTGCGCAGAATGCTATGGAACAGGTGTTTGGTGCTGAGTACGTGTCGCTGCACGTCAGGAAGAGCAACCGTGCAGCTTTTAATTTGTACACAGAGACATTGGGGTACAAGATTCATGATGTGGAGGCCAAGTATTATGCCGATGGTGAGGATGCTTACGACATGAGAAAGCAACTCAAGGGGAAGACGATACACCCACCACAGCATCATCATCACCACCACCACCATGGCGGTGGATGTTGTTCTGGTGAGACCAAGGGGAATGCTAAAGCCTGA
Protein sequence

>Msa0401450

MVCIRKATVNDLLAMQACNLFCLPENYQMKYYLYHILSWPQLLYVAEDYNGRIVGYVLAKMEEETNECHGHITSLAVLRTHRKLGIATKLMTAAQNAMEQVFGAEYVSLHVRKSNRAAFNLYTETLGYKIHDVEAKYYADGEDAYDMRKQLKGKTIHPPQHHHHHHHHGGGCCSGETKGNAKA*