AlfalfaGEDB | Msa0402010

M. sativa cultivar zhongmu-4 / Msa0402010

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0402010	XP_039688326.1	85.629	167	24	0	174	340	77	243	3.07e-95	293

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0402010	sp\|Q6H7U5\|CIPKQ_ORYSJ	58.788	165	67	1	174	337	77	241	2.47e-65	218

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0402010	A0A396IMF8	85.629	167	24	0	174	340	77	243	1.47e-95	293

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0402010	MtrunA17_Chr3g0091421	85.629	167	24	0	174	340	77	243	2.82e-99	293
Msa0402010	MtrunA17_Chr3g0091281	85.093	161	24	0	174	334	77	237	1.43e-94	281
Msa0402010	MtrunA17_Chr3g0091311	76.374	182	22	1	174	355	77	237	1.38e-90	272
Msa0402010	MtrunA17_Chr3g0091291	75.275	182	24	1	174	355	25	185	1.85e-90	270
Msa0402010	MtrunA17_Chr3g0114511	80.503	159	28	2	174	331	97	253	8.94e-83	258
Msa0402010	MtrunA17_Chr5g0404321	58.874	231	35	6	1	175	1	227	1.40e-71	228
Msa0402010	MtrunA17_Chr5g0432471	60.377	159	62	1	174	331	77	235	8.05e-66	215
Msa0402010	MtrunA17_Chr7g0244521	58.286	175	72	1	174	347	77	251	9.65e-66	214
Msa0402010	MtrunA17_Chr3g0107011	57.500	160	67	1	174	332	79	238	2.26e-64	211
Msa0402010	MtrunA17_Chr4g0013131	59.006	161	65	1	174	333	77	237	3.18e-63	208

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0402010	AT5G25110.1	54.301	186	75	2	173	348	107	292	1.99e-65	215
Msa0402010	AT5G45820.1	57.714	175	70	2	161	331	61	235	1.50e-64	211
Msa0402010	AT5G10930.1	52.688	186	78	2	173	348	77	262	2.49e-62	206
Msa0402010	AT4G30960.1	56.522	161	69	1	174	333	89	249	5.91e-61	202
Msa0402010	AT2G38490.1	55.233	172	70	2	164	328	77	248	3.22e-60	200
Msa0402010	AT1G30270.1	52.874	174	80	2	174	345	96	269	9.42e-60	200
Msa0402010	AT1G30270.2	52.874	174	80	2	174	345	96	269	1.51e-59	199
Msa0402010	AT1G30270.3	52.907	172	79	2	176	345	1	172	1.84e-59	196
Msa0402010	AT4G14580.1	50.000	184	83	3	154	328	60	243	2.65e-59	197
Msa0402010	AT1G01140.1	56.250	160	68	2	174	331	84	243	4.83e-59	197

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Find 74 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAGGTCTAACATTT+CGG	0.268900	3_2:-29543762	Msa0402010:CDS
AAACTCAGGTCTAACATTTC+GGG	0.316832	3_2:-29543761	Msa0402010:CDS
AACAACCTTCCACACTCGTT+GGG	0.478532	3_2:+29544015	None:intergenic
AAGACAATACTTCCAACAAT+TGG	0.447321	3_2:-29543228	Msa0402010:CDS
AAGCATAGTACGGGAACTCA+AGG	0.555180	3_2:-29544311	Msa0402010:CDS
AAGGAGATGAGGGATGGTAT+TGG	0.516169	3_2:-29544292	Msa0402010:CDS
AATATCTACTGCTAAAATAA+TGG	0.359036	3_2:-29542803	None:intergenic
AATCTCCTACATAGTGAAAT+TGG	0.272234	3_2:+29543697	None:intergenic
ACAAGAAGGGTGTCTACCAT+CGG	0.559667	3_2:-29543184	Msa0402010:CDS
ACATCTGGAGCTACATACAT+CGG	0.644054	3_2:+29543041	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGCGTATCTATTGAACTA+TGG	-	chr3_2:29543212-29543231	Msa0402010:CDS	30.0%
AAAACTCAGGTCTAACATTT+CGG	-	chr3_2:29543366-29543385	Msa0402010:intron	30.0%
AATCTCCTACATAGTGAAAT+TGG	+	chr3_2:29543434-29543453	None:intergenic	30.0%
TATGTAGGAGATTTCATTCT+AGG	-	chr3_2:29543441-29543460	Msa0402010:intron	30.0%
ATCTTAGAATATGCAAAAGG+CGG	-	chr3_2:29543829-29543848	Msa0402010:CDS	30.0%
AAGACAATACTTCCAACAAT+TGG	-	chr3_2:29543900-29543919	Msa0402010:CDS	30.0%
ATGGAGAAAAAGCTAATGTT+TGG	-	chr3_2:29544130-29544149	Msa0402010:intron	30.0%
CAGTAGATATTCTACTATCA+GGG	+	chr3_2:29544316-29544335	None:intergenic	30.0%
TATGCGTATCTATTGAACTA+TGG	-	chr3_2:29543212-29543231	Msa0402010:CDS	30.0%
AAAACTCAGGTCTAACATTT+CGG	-	chr3_2:29543366-29543385	Msa0402010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	29542806	29544344	29542806	ID=Msa0402010;Name=Msa0402010
chr3_2	mRNA	29542806	29544344	29542806	ID=Msa0402010-mRNA-1;Parent=Msa0402010;Name=Msa0402010-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0\|0\|1\|0.33\|0.25\|4\|0\|355
chr3_2	exon	29544243	29544344	29544243	ID=Msa0402010-mRNA-1:exon:5911;Parent=Msa0402010-mRNA-1
chr3_2	exon	29543883	29544130	29543883	ID=Msa0402010-mRNA-1:exon:5910;Parent=Msa0402010-mRNA-1
chr3_2	exon	29543684	29543855	29543684	ID=Msa0402010-mRNA-1:exon:5909;Parent=Msa0402010-mRNA-1
chr3_2	exon	29542806	29543351	29542806	ID=Msa0402010-mRNA-1:exon:5908;Parent=Msa0402010-mRNA-1
chr3_2	CDS	29544243	29544344	29544243	ID=Msa0402010-mRNA-1:cds;Parent=Msa0402010-mRNA-1
chr3_2	CDS	29543883	29544130	29543883	ID=Msa0402010-mRNA-1:cds;Parent=Msa0402010-mRNA-1
chr3_2	CDS	29543684	29543855	29543684	ID=Msa0402010-mRNA-1:cds;Parent=Msa0402010-mRNA-1
chr3_2	CDS	29542806	29543351	29542806	ID=Msa0402010-mRNA-1:cds;Parent=Msa0402010-mRNA-1

Gene Sequence

>Msa0402010

ATGTCGTTGAGAAGCATAGTACGGGAACTCAAGGAGATGAGGGATGGTATTGGTATTACGTCGAGGAGAAATGTGGGTAGTAGGCATTCACAACATCAGACAACTGAGACTTCTTGGCCTGCACATGCTGTTGTCATTTCTTGTGCTTCTGTGTGTAAACCATGGAGTGTCGTTACACAAGAGATTGTTCAGACTCCCAACGAGTGTGGAAGGTTGTTGTTTCCTATTTCGTTAAATCAGCTGGGTCCTCGTGATTCTCCGATACAATGCTTCATCGGGAGGGACAGAGAAACATATGCGTATCTATTGAACTATGGACTGGTGCCATCGGAAAATGAGACTGATAAGCTTGCAATCGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTCTCGTTCCAGCATTGCGTATGTTGGAAAACTCAGGTCTAACATTTCGGGAACCTCCACACGGAGCTGGGAATCAACCAAATAGCTTGTCTCCAATTTCACTATGTAGGAGATTTCATTCTAGGCAGGTTTTGGCCACCAAAACTAAGATATACCTTATCTTAGAATATGCAAAAGGCGGTGAGCTTTTCCCCCAAATATTAAAAGGTAACTTCAATTATAATCAAGTAAGACAATACTTCCAACAATTGGTAAGTGCTCTAGATTTTTGCCACAAGAAGGGTGTCTACCATCGGGATTTGAAGCCCGAAAACTTGCTTTTAGACGAGAACAATGTTCTTAAAATAGCTGATTTCGGGTTTAGCACATTCATAGAATATTATCACTGCAACATGTTGCAAACAATGTGTAGAACTCCGATGTATGTAGCTCCAGATGTTTTCCGTGGAAAAGGTTATTATGGAGAAAAAGCTAATGTTTGGTCTTGCAGAGTAATCTTATATGTTCTTTTGGCCGGTTACTATCCATTTTATGATCAGAATTTAATGGAACTGTATCGGAAAATCCACAAGGAAGAATACAAATGTCCCCCTGGTTTTCAGTCGAGATACGTAGATTATTATCAAAGATTCTCAATCCCAACCCTGATAGTAGAATATCTACTGCTAAAATAA

Protein sequence

>Msa0402010

MSLRSIVRELKEMRDGIGITSRRNVGSRHSQHQTTETSWPAHAVVISCASVCKPWSVVTQEIVQTPNECGRLLFPISLNQLGPRDSPIQCFIGRDRETYAYLLNYGLVPSENETDKLAIGTDFIISLVADDFLVPALRMLENSGLTFREPPHGAGNQPNSLSPISLCRRFHSRQVLATKTKIYLILEYAKGGELFPQILKGNFNYNQVRQYFQQLVSALDFCHKKGVYHRDLKPENLLLDENNVLKIADFGFSTFIEYYHCNMLQTMCRTPMYVAPDVFRGKGYYGEKANVWSCRVILYVLLAGYYPFYDQNLMELYRKIHKEEYKCPPGFQSRYVDYYQRFSIPTLIVEYLLLK*