Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402370 | XP_039685680.1 | 76.537 | 797 | 83 | 6 | 1 | 724 | 35 | 800 | 0.0 | 1196 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402370 | sp|Q9SZL8|FRS5_ARATH | 25.676 | 666 | 349 | 22 | 16 | 635 | 72 | 637 | 9.77e-47 | 181 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402370 | D3YBB9 | 66.911 | 819 | 154 | 7 | 3 | 743 | 69 | 848 | 0.0 | 1076 |
Gene ID | Type | Classification |
---|---|---|
Msa0402370 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402370 | MtrunA17_Chr3g0088371 | 65.946 | 185 | 34 | 2 | 588 | 743 | 1 | 185 | 4.86e-70 | 227 |
Msa0402370 | MtrunA17_Chr2g0324011 | 26.316 | 665 | 352 | 15 | 13 | 635 | 3 | 571 | 1.02e-69 | 239 |
Msa0402370 | MtrunA17_Chr3g0082121 | 26.917 | 665 | 334 | 16 | 13 | 632 | 33 | 590 | 5.98e-63 | 223 |
Msa0402370 | MtrunA17_Chr1g0202341 | 26.415 | 636 | 373 | 18 | 16 | 632 | 50 | 609 | 5.18e-58 | 209 |
Msa0402370 | MtrunA17_Chr8g0363841 | 25.868 | 634 | 375 | 17 | 22 | 635 | 22 | 580 | 5.93e-52 | 192 |
Msa0402370 | MtrunA17_Chr1g0164591 | 30.671 | 313 | 175 | 4 | 113 | 423 | 1 | 273 | 8.48e-49 | 175 |
Msa0402370 | MtrunA17_Chr1g0172971 | 83.673 | 98 | 16 | 0 | 1 | 98 | 20 | 117 | 1.42e-48 | 180 |
Msa0402370 | MtrunA17_Chr1g0203721 | 23.708 | 658 | 353 | 17 | 22 | 632 | 68 | 623 | 2.82e-48 | 183 |
Msa0402370 | MtrunA17_Chr7g0258861 | 31.378 | 341 | 183 | 7 | 12 | 349 | 2 | 294 | 2.31e-46 | 167 |
Msa0402370 | MtrunA17_Chr2g0296781 | 24.684 | 632 | 376 | 18 | 23 | 632 | 3 | 556 | 8.42e-46 | 175 |
Msa0402370 | MtrunA17_Chr6g0458391 | 23.744 | 657 | 332 | 16 | 23 | 632 | 231 | 765 | 2.36e-44 | 171 |
Msa0402370 | MtrunA17_Chr6g0477261 | 26.283 | 487 | 295 | 11 | 162 | 632 | 7 | 445 | 6.03e-42 | 162 |
Msa0402370 | MtrunA17_Chr2g0287651 | 23.756 | 623 | 395 | 13 | 21 | 632 | 79 | 632 | 2.90e-41 | 162 |
Msa0402370 | MtrunA17_Chr6g0475591 | 88.312 | 77 | 9 | 0 | 170 | 246 | 1 | 77 | 1.03e-39 | 140 |
Msa0402370 | MtrunA17_Chr5g0441581 | 23.435 | 687 | 411 | 20 | 5 | 663 | 25 | 624 | 1.97e-39 | 155 |
Msa0402370 | MtrunA17_Chr5g0448761 | 27.404 | 416 | 244 | 10 | 16 | 423 | 59 | 424 | 2.30e-39 | 156 |
Msa0402370 | MtrunA17_Chr3g0118611 | 25.641 | 507 | 260 | 15 | 203 | 668 | 111 | 541 | 2.57e-37 | 149 |
Msa0402370 | MtrunA17_Chr2g0329031 | 23.404 | 658 | 349 | 23 | 12 | 628 | 14 | 557 | 7.20e-37 | 148 |
Msa0402370 | MtrunA17_Chr1g0198761 | 25.037 | 667 | 342 | 23 | 18 | 630 | 48 | 610 | 2.77e-36 | 146 |
Msa0402370 | MtrunA17_Chr5g0440451 | 22.189 | 667 | 369 | 21 | 16 | 634 | 42 | 606 | 1.68e-34 | 141 |
Msa0402370 | MtrunA17_Chr1g0207551 | 23.328 | 643 | 366 | 19 | 32 | 639 | 49 | 599 | 3.41e-33 | 137 |
Msa0402370 | MtrunA17_Chr3g0080351 | 22.961 | 662 | 376 | 21 | 4 | 632 | 63 | 623 | 2.21e-32 | 134 |
Msa0402370 | MtrunA17_Chr2g0290391 | 23.538 | 667 | 345 | 23 | 20 | 630 | 54 | 611 | 1.47e-31 | 131 |
Msa0402370 | MtrunA17_Chr2g0291591 | 24.402 | 418 | 240 | 12 | 19 | 425 | 66 | 418 | 1.59e-30 | 127 |
Msa0402370 | MtrunA17_Chr2g0276841 | 23.232 | 693 | 414 | 25 | 31 | 685 | 84 | 696 | 1.59e-30 | 128 |
Msa0402370 | MtrunA17_Chr1g0203051 | 23.350 | 394 | 245 | 6 | 32 | 423 | 94 | 432 | 8.99e-30 | 125 |
Msa0402370 | MtrunA17_Chr5g0431001 | 26.018 | 442 | 252 | 14 | 22 | 449 | 66 | 446 | 2.24e-29 | 122 |
Msa0402370 | MtrunA17_Chr5g0448511 | 24.236 | 458 | 269 | 15 | 198 | 635 | 1 | 400 | 2.32e-29 | 123 |
Msa0402370 | MtrunA17_Chr1g0196541 | 24.265 | 408 | 249 | 9 | 21 | 425 | 1 | 351 | 1.44e-28 | 122 |
Msa0402370 | MtrunA17_Chr2g0287061 | 24.505 | 404 | 212 | 13 | 23 | 423 | 189 | 502 | 9.44e-25 | 110 |
Msa0402370 | MtrunA17_Chr5g0409251 | 91.176 | 34 | 2 | 1 | 276 | 308 | 175 | 208 | 2.85e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402370 | AT4G38180.1 | 25.676 | 666 | 349 | 22 | 16 | 635 | 72 | 637 | 9.93e-48 | 181 |
Msa0402370 | AT4G15090.1 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
Msa0402370 | AT4G15090.5 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
Msa0402370 | AT4G15090.3 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
Msa0402370 | AT4G15090.2 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
Msa0402370 | AT4G15090.4 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
Msa0402370 | AT5G28530.1 | 23.758 | 644 | 372 | 21 | 22 | 630 | 60 | 619 | 6.47e-32 | 132 |
Msa0402370 | AT5G28530.3 | 23.950 | 643 | 368 | 20 | 22 | 630 | 60 | 615 | 1.15e-31 | 132 |
Msa0402370 | AT5G28530.2 | 23.950 | 643 | 368 | 20 | 22 | 630 | 60 | 615 | 1.15e-31 | 132 |
Msa0402370 | AT1G76320.3 | 23.364 | 642 | 342 | 19 | 32 | 632 | 12 | 544 | 1.92e-30 | 128 |
Msa0402370 | AT1G76320.1 | 22.981 | 644 | 342 | 19 | 32 | 632 | 12 | 544 | 3.02e-30 | 127 |
Msa0402370 | AT1G76320.4 | 22.981 | 644 | 342 | 19 | 32 | 632 | 12 | 544 | 3.02e-30 | 127 |
Msa0402370 | AT1G76320.2 | 22.981 | 644 | 342 | 19 | 32 | 632 | 12 | 544 | 3.17e-30 | 127 |
Msa0402370 | AT1G80010.1 | 23.369 | 659 | 358 | 24 | 23 | 632 | 101 | 661 | 3.40e-28 | 121 |
Msa0402370 | AT3G06250.2 | 24.228 | 421 | 225 | 11 | 5 | 423 | 178 | 506 | 7.81e-28 | 120 |
Msa0402370 | AT3G06250.1 | 24.228 | 421 | 225 | 11 | 5 | 423 | 178 | 506 | 7.81e-28 | 120 |
Msa0402370 | AT3G06250.3 | 24.228 | 421 | 225 | 11 | 5 | 423 | 178 | 506 | 7.81e-28 | 120 |
Msa0402370 | AT3G22170.2 | 21.299 | 662 | 368 | 16 | 14 | 632 | 67 | 618 | 1.05e-27 | 120 |
Msa0402370 | AT3G22170.1 | 21.299 | 662 | 368 | 16 | 14 | 632 | 67 | 618 | 1.05e-27 | 120 |
Msa0402370 | AT2G32250.8 | 23.052 | 616 | 354 | 18 | 32 | 637 | 12 | 517 | 1.08e-27 | 120 |
Msa0402370 | AT2G32250.7 | 23.052 | 616 | 354 | 18 | 32 | 637 | 12 | 517 | 1.10e-27 | 120 |
Msa0402370 | AT1G10240.2 | 22.520 | 635 | 382 | 23 | 22 | 629 | 53 | 604 | 4.18e-27 | 117 |
Msa0402370 | AT1G10240.1 | 22.520 | 635 | 382 | 23 | 22 | 629 | 53 | 604 | 4.18e-27 | 117 |
Msa0402370 | AT2G27110.3 | 27.500 | 240 | 141 | 2 | 193 | 430 | 34 | 242 | 1.26e-26 | 116 |
Msa0402370 | AT2G27110.2 | 27.500 | 240 | 141 | 2 | 193 | 430 | 179 | 387 | 1.33e-26 | 116 |
Msa0402370 | AT2G27110.1 | 27.500 | 240 | 141 | 2 | 193 | 430 | 179 | 387 | 1.33e-26 | 116 |
Msa0402370 | AT2G32250.5 | 22.465 | 641 | 375 | 19 | 7 | 637 | 30 | 558 | 4.30e-25 | 111 |
Msa0402370 | AT5G18960.2 | 24.051 | 395 | 200 | 13 | 3 | 390 | 197 | 498 | 4.10e-23 | 105 |
Msa0402370 | AT5G18960.1 | 24.051 | 395 | 200 | 13 | 3 | 390 | 197 | 498 | 4.10e-23 | 105 |
Msa0402370 | AT2G32250.6 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.43e-22 | 103 |
Msa0402370 | AT2G32250.1 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.43e-22 | 103 |
Msa0402370 | AT2G32250.3 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.43e-22 | 103 |
Msa0402370 | AT2G32250.2 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.81e-22 | 102 |
Msa0402370 | AT2G32250.4 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.81e-22 | 102 |
Msa0402370 | AT1G52520.1 | 22.516 | 644 | 369 | 23 | 23 | 632 | 91 | 638 | 3.91e-22 | 102 |
Msa0402370 | AT4G38170.1 | 27.143 | 210 | 117 | 4 | 217 | 424 | 24 | 199 | 8.44e-21 | 97.4 |
Find 101 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTCTCTTCTTTGACTTAAT+TGG | 0.121298 | 3_2:-30369187 | None:intergenic |
TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 3_2:+30367770 | Msa0402370:intron |
TATCGTCTGTGGTTTCTTAT+TGG | 0.203510 | 3_2:-30367897 | None:intergenic |
CATCTTTCAGGTTTGATATC+TGG | 0.213065 | 3_2:-30367399 | None:intergenic |
TTCTTTGACTTAATTGGATT+TGG | 0.236375 | 3_2:-30369181 | None:intergenic |
CTTTAGTCATCTCAACATTA+TGG | 0.239089 | 3_2:+30368318 | Msa0402370:CDS |
TTTGTCTCAAACCATCTTTC+AGG | 0.239790 | 3_2:-30367411 | None:intergenic |
CTTGCTTTGCATTTATTCAT+AGG | 0.265760 | 3_2:+30368458 | Msa0402370:CDS |
TCTGATGTTGTCCTGTTGTT+AGG | 0.288908 | 3_2:-30366565 | None:intergenic |
GCCTTCCACTGTTGATGTTT+TGG | 0.290838 | 3_2:+30368609 | Msa0402370:CDS |
TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 3_2:-30366756 | None:intergenic |
GAGGAGTTACTTCTTTCTAT+AGG | 0.322739 | 3_2:+30369049 | Msa0402370:CDS |
CAACTAGATTATTCTCTATT+CGG | 0.323831 | 3_2:+30367072 | Msa0402370:CDS |
CTAAGGTAACACGAATGATT+TGG | 0.324322 | 3_2:-30366739 | None:intergenic |
TTTGTTTCATCCGATTTATA+AGG | 0.324732 | 3_2:-30369249 | None:intergenic |
GCTGTTGGTGAAACATTTGC+TGG | 0.345953 | 3_2:+30369124 | Msa0402370:CDS |
TTTAAGCCTGAAAACCAAAA+AGG | 0.346249 | 3_2:-30366883 | None:intergenic |
ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 3_2:-30367783 | None:intergenic |
TTCTACACGGTTCTTGAAGC+TGG | 0.366559 | 3_2:+30369016 | Msa0402370:CDS |
CATGTCATATGTTTGAAAAC+AGG | 0.389937 | 3_2:+30368734 | Msa0402370:CDS |
TCATGCTGAGTTGGACTTCA+AGG | 0.393220 | 3_2:+30368360 | Msa0402370:CDS |
GGCAGAAATTCCTTATAAAT+CGG | 0.397916 | 3_2:+30369239 | Msa0402370:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3_2:-30369163 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3_2:+30368492 | Msa0402370:CDS |
GAGAACGTCTAATGAAGTTA+TGG | 0.402471 | 3_2:+30366831 | Msa0402370:CDS |
GCTACATTTGAAGACTTAGA+TGG | 0.403122 | 3_2:-30369100 | None:intergenic |
GACCGCATCAGCTGCCTGTT+GGG | 0.418984 | 3_2:-30368412 | None:intergenic |
ATCGAACAAACAATATATAT+CGG | 0.421135 | 3_2:+30367121 | Msa0402370:CDS |
AAAACACCTGGAAAACTATT+CGG | 0.428349 | 3_2:-30367956 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_2:+30366769 | Msa0402370:CDS |
CTGTTGGTGAAACATTTGCT+GGG | 0.432277 | 3_2:+30369125 | Msa0402370:CDS |
AGCTGGAATATCTTTGAAGT+TGG | 0.433004 | 3_2:+30366651 | Msa0402370:CDS |
AACAATATATATCGGCCATT+AGG | 0.437083 | 3_2:+30367129 | Msa0402370:CDS |
GATCTTCAAAACTTGAGAAA+AGG | 0.437597 | 3_2:-30368651 | None:intergenic |
TTCTTTGAACTTTGGTGCAG+AGG | 0.441734 | 3_2:-30369155 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_2:+30366634 | Msa0402370:CDS |
TTGCTTTGCATTTATTCATA+GGG | 0.448231 | 3_2:+30368459 | Msa0402370:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.452819 | 3_2:+30366686 | Msa0402370:CDS |
GAATGATTTGGTTTATGTAA+TGG | 0.457469 | 3_2:-30366727 | None:intergenic |
TCCATGATTCTTCATTGCTA+GGG | 0.459212 | 3_2:-30366354 | None:intergenic |
GAAGTTATGGGTCAAGGAGT+TGG | 0.459248 | 3_2:+30366844 | Msa0402370:CDS |
CTTCAAAACATGTCGACATA+AGG | 0.462702 | 3_2:-30368761 | None:intergenic |
GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 3_2:+30366799 | Msa0402370:CDS |
AGAACGTCTAATGAAGTTAT+GGG | 0.466325 | 3_2:+30366832 | Msa0402370:CDS |
GTTTGCTTAATCCTAACAAC+AGG | 0.467124 | 3_2:+30366554 | Msa0402370:CDS |
TTCCATGATTCTTCATTGCT+AGG | 0.469455 | 3_2:-30366355 | None:intergenic |
TTGAAGATCTTGGAGTTCCT+AGG | 0.473596 | 3_2:+30368778 | Msa0402370:CDS |
ACAAAATAAGAAATCTGATA+AGG | 0.474392 | 3_2:+30366483 | Msa0402370:CDS |
TATGAGGAGGACATAACAAA+AGG | 0.476915 | 3_2:+30368508 | Msa0402370:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_2:-30368494 | None:intergenic |
CAGATATCAAACCTGAAAGA+TGG | 0.487871 | 3_2:+30367400 | Msa0402370:CDS |
TTAGATGGTGTCACAGATGA+TGG | 0.489268 | 3_2:-30369085 | None:intergenic |
CCCCTAGCAATGAAGAATCA+TGG | 0.491418 | 3_2:+30366353 | Msa0402370:CDS |
CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 3_2:+30366517 | Msa0402370:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3_2:-30367017 | None:intergenic |
TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3_2:-30366628 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3_2:+30368351 | Msa0402370:CDS |
TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3_2:+30366528 | Msa0402370:CDS |
TCTACACGGTTCTTGAAGCT+GGG | 0.514580 | 3_2:+30369017 | Msa0402370:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.515275 | 3_2:+30368332 | Msa0402370:CDS |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3_2:-30368300 | None:intergenic |
TCATGATCGACTTGATGAAA+GGG | 0.522852 | 3_2:+30368672 | Msa0402370:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3_2:-30368489 | None:intergenic |
ATCATGATCGACTTGATGAA+AGG | 0.531340 | 3_2:+30368671 | Msa0402370:CDS |
ATGTCATATGTTTGAAAACA+GGG | 0.531727 | 3_2:+30368735 | Msa0402370:CDS |
TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 3_2:+30367982 | Msa0402370:CDS |
CATAACAAAAGGGTCTGCCT+TGG | 0.539378 | 3_2:+30368519 | Msa0402370:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3_2:-30368295 | None:intergenic |
ATGAGGAGGACATAACAAAA+GGG | 0.542077 | 3_2:+30368509 | Msa0402370:CDS |
AGCAAGCTAAAGTCTGAAGT+TGG | 0.542907 | 3_2:-30368148 | None:intergenic |
TGAATAAATGCAAAGCAAGC+TGG | 0.546449 | 3_2:-30368454 | None:intergenic |
AACACAATAACGCACTAGCC+TGG | 0.552106 | 3_2:-30367928 | None:intergenic |
AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3_2:+30366529 | Msa0402370:CDS |
TTCACAAACTCAATAACCAA+TGG | 0.554620 | 3_2:-30366592 | None:intergenic |
GACAATATGTTATAAAACGT+TGG | 0.562457 | 3_2:+30368839 | Msa0402370:CDS |
CCATGATTCTTCATTGCTAG+GGG | 0.566277 | 3_2:-30366353 | None:intergenic |
TAAGATATATAGATGGGATG+TGG | 0.566406 | 3_2:+30366693 | Msa0402370:CDS |
GGACCGCATCAGCTGCCTGT+TGG | 0.570695 | 3_2:-30368413 | None:intergenic |
TCTAATGAAGTTATGGGTCA+AGG | 0.571062 | 3_2:+30366838 | Msa0402370:CDS |
GGTAACTATGCATATAACAC+TGG | 0.575752 | 3_2:+30366421 | Msa0402370:CDS |
GTCTTCAGTGCCAACATGGA+TGG | 0.576478 | 3_2:-30368902 | None:intergenic |
TCCAAAACATCAACAGTGGA+AGG | 0.578008 | 3_2:-30368610 | None:intergenic |
GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3_2:+30366847 | Msa0402370:CDS |
TTTGAGACAAACTTAAATGA+TGG | 0.580163 | 3_2:+30367423 | Msa0402370:CDS |
TCTTCAAATGTAGCTGCTGT+TGG | 0.582982 | 3_2:+30369109 | Msa0402370:CDS |
ATCCCAACAGGCAGCTGATG+CGG | 0.586005 | 3_2:+30368410 | Msa0402370:CDS |
TATGATGATGCTGATAATGA+CGG | 0.599988 | 3_2:+30368586 | Msa0402370:CDS |
TGTGTATAAGATATATAGAT+GGG | 0.601002 | 3_2:+30366687 | Msa0402370:CDS |
GACAACATCAGACAGTCCAT+TGG | 0.604607 | 3_2:+30366576 | Msa0402370:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_2:+30368495 | Msa0402370:CDS |
ATGATGATGCTGATAATGAC+GGG | 0.620534 | 3_2:+30368587 | Msa0402370:CDS |
TGTTGGTGAAACATTTGCTG+GGG | 0.623398 | 3_2:+30369126 | Msa0402370:CDS |
TGTCATATGTTTGAAAACAG+GGG | 0.632114 | 3_2:+30368736 | Msa0402370:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_2:+30368333 | Msa0402370:CDS |
TGGTCTGTATATATCGTCTG+TGG | 0.648431 | 3_2:-30367908 | None:intergenic |
TATATTGCACATGACCACCT+AGG | 0.649929 | 3_2:-30368795 | None:intergenic |
GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 3_2:-30368877 | None:intergenic |
TGCATCCAAAACATCAACAG+TGG | 0.653669 | 3_2:-30368614 | None:intergenic |
AAGATCTTGGAGTTCCTAGG+TGG | 0.662062 | 3_2:+30368781 | Msa0402370:CDS |
TGGTGTGTACTTGTTTACAA+CGG | 0.684217 | 3_2:-30368434 | None:intergenic |
ACAGACGATATATACAGACC+AGG | 0.696353 | 3_2:+30367910 | Msa0402370:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGATGAAAAATTGTTTTAA+TGG | + | chr3_2:30368121-30368140 | Msa0402370:CDS | 15.0% |
!!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr3_2:30366400-30366419 | Msa0402370:CDS | 20.0% |
!! | ACAAAATAAGAAATCTGATA+AGG | + | chr3_2:30366483-30366502 | Msa0402370:CDS | 20.0% |
!! | ATGTGTATAAGATATATAGA+TGG | + | chr3_2:30366686-30366705 | Msa0402370:CDS | 20.0% |
!! | TGTGTATAAGATATATAGAT+GGG | + | chr3_2:30366687-30366706 | Msa0402370:CDS | 20.0% |
!! | ATCGAACAAACAATATATAT+CGG | + | chr3_2:30367121-30367140 | Msa0402370:CDS | 20.0% |
!! | TTCTTACTTATTTAAACTAC+AGG | + | chr3_2:30367305-30367324 | Msa0402370:intron | 20.0% |
!! | TCTTACTTATTTAAACTACA+GGG | + | chr3_2:30367306-30367325 | Msa0402370:intron | 20.0% |
!!! | ATTTATATTTTGAACTACCT+AGG | + | chr3_2:30367454-30367473 | Msa0402370:intron | 20.0% |
!!! | TTTTGATGAGTTAACTAATT+TGG | + | chr3_2:30368051-30368070 | Msa0402370:CDS | 20.0% |
!!! | AATCAGATTTTGACTATAAT+TGG | + | chr3_2:30368092-30368111 | Msa0402370:CDS | 20.0% |
!!! | ATCAGATTTTGACTATAATT+GGG | + | chr3_2:30368093-30368112 | Msa0402370:CDS | 20.0% |
!!! | TGAAAAATTGTTTTAATGGA+AGG | + | chr3_2:30368125-30368144 | Msa0402370:CDS | 20.0% |
!! | ATAACACTGGATTTTCTATT+AGG | + | chr3_2:30366434-30366453 | Msa0402370:CDS | 25.0% |
!!! | GAATGATTTGGTTTATGTAA+TGG | - | chr3_2:30366730-30366749 | None:intergenic | 25.0% |
! | TGGATATCATAGTAAAAAGA+TGG | - | chr3_2:30367000-30367019 | None:intergenic | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | + | chr3_2:30367034-30367053 | Msa0402370:CDS | 25.0% |
!!! | AGACATAGCTAGTATTTTTT+GGG | + | chr3_2:30367035-30367054 | Msa0402370:CDS | 25.0% |
! | CAACTAGATTATTCTCTATT+CGG | + | chr3_2:30367072-30367091 | Msa0402370:CDS | 25.0% |
! | AGTAAAAAACACTAACCTAA+TGG | - | chr3_2:30367147-30367166 | None:intergenic | 25.0% |
!! | TGTTTACTTTCATTTTGTTC+TGG | + | chr3_2:30367187-30367206 | Msa0402370:intron | 25.0% |
! | CTTACTTATTTAAACTACAG+GGG | + | chr3_2:30367307-30367326 | Msa0402370:intron | 25.0% |
!! | TTTGAGACAAACTTAAATGA+TGG | + | chr3_2:30367423-30367442 | Msa0402370:CDS | 25.0% |
!! | GTTGTCTTTTGTTCTAATAT+AGG | + | chr3_2:30367742-30367761 | Msa0402370:intron | 25.0% |
! | ATGATTGTCAAAACCAATAA+AGG | - | chr3_2:30367786-30367805 | None:intergenic | 25.0% |
!!! | AGATAACAACTACTTTTGAT+TGG | + | chr3_2:30367846-30367865 | Msa0402370:CDS | 25.0% |
! | CAAAAAATAATTATCCCAAC+AGG | + | chr3_2:30368398-30368417 | Msa0402370:CDS | 25.0% |
! | TTGCTTTGCATTTATTCATA+GGG | + | chr3_2:30368459-30368478 | Msa0402370:CDS | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr3_2:30368492-30368511 | None:intergenic | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr3_2:30368492-30368511 | Msa0402370:CDS | 25.0% |
! | ATGTCATATGTTTGAAAACA+GGG | + | chr3_2:30368735-30368754 | Msa0402370:CDS | 25.0% |
!! | CGTTTTATAACATATTGTCT+AGG | - | chr3_2:30368838-30368857 | None:intergenic | 25.0% |
! | GACAATATGTTATAAAACGT+TGG | + | chr3_2:30368839-30368858 | Msa0402370:CDS | 25.0% |
!!! | GCATCTAAAATTTTTCTACA+CGG | + | chr3_2:30369003-30369022 | Msa0402370:CDS | 25.0% |
!! | TTCTTTGACTTAATTGGATT+TGG | - | chr3_2:30369184-30369203 | None:intergenic | 25.0% |
! | AAAGTGATTATGAAAAAGCT+AGG | + | chr3_2:30369212-30369231 | Msa0402370:CDS | 25.0% |
! | AAGTGATTATGAAAAAGCTA+GGG | + | chr3_2:30369213-30369232 | Msa0402370:CDS | 25.0% |
! | TTTGTTTCATCCGATTTATA+AGG | - | chr3_2:30369252-30369271 | None:intergenic | 25.0% |
!!! | GATGAAGCTTTAAAAAAAAG+TGG | + | chr3_2:30369280-30369299 | Msa0402370:CDS | 25.0% |
CGTTATGTTTGTAACAAACA+AGG | + | chr3_2:30366517-30366536 | Msa0402370:CDS | 30.0% | |
TAACAAACAAGGTTTCAAGA+AGG | + | chr3_2:30366528-30366547 | Msa0402370:CDS | 30.0% | |
AACAAACAAGGTTTCAAGAA+GGG | + | chr3_2:30366529-30366548 | Msa0402370:CDS | 30.0% | |
TTCACAAACTCAATAACCAA+TGG | - | chr3_2:30366595-30366614 | None:intergenic | 30.0% | |
TAAGATATATAGATGGGATG+TGG | + | chr3_2:30366693-30366712 | Msa0402370:CDS | 30.0% | |
TTACTTCTCGAAATGATCTA+AGG | - | chr3_2:30366759-30366778 | None:intergenic | 30.0% | |
!! | GCTCTTATAAATTCTAAAGC+TGG | + | chr3_2:30366799-30366818 | Msa0402370:CDS | 30.0% |
AGAACGTCTAATGAAGTTAT+GGG | + | chr3_2:30366832-30366851 | Msa0402370:CDS | 30.0% | |
!!! | AATCTTCCTTTTTGGTTTTC+AGG | + | chr3_2:30366877-30366896 | Msa0402370:CDS | 30.0% |
TTTAAGCCTGAAAACCAAAA+AGG | - | chr3_2:30366886-30366905 | None:intergenic | 30.0% | |
AACAATATATATCGGCCATT+AGG | + | chr3_2:30367129-30367148 | Msa0402370:CDS | 30.0% | |
TAAGAACTATAGTCAAACCT+AGG | - | chr3_2:30367291-30367310 | None:intergenic | 30.0% | |
! | TTTAACCATGCTGTTTGTTT+AGG | + | chr3_2:30367330-30367349 | Msa0402370:intron | 30.0% |
! | TTAACCATGCTGTTTGTTTA+GGG | + | chr3_2:30367331-30367350 | Msa0402370:intron | 30.0% |
AAAAACCCCATGAAAACAAA+TGG | - | chr3_2:30367372-30367391 | None:intergenic | 30.0% | |
! | CAAACTTAAATGATGGTGAT+TGG | + | chr3_2:30367430-30367449 | Msa0402370:intron | 30.0% |
TTGTCTAAGTAAAAATGCCT+AGG | - | chr3_2:30367474-30367493 | None:intergenic | 30.0% | |
TAAATTTCAGCTGCCTTTAT+TGG | + | chr3_2:30367770-30367789 | Msa0402370:intron | 30.0% | |
!!! | CATCGTAAGAGTGTTTTATT+TGG | + | chr3_2:30367803-30367822 | Msa0402370:CDS | 30.0% |
AAAACACCTGGAAAACTATT+CGG | - | chr3_2:30367959-30367978 | None:intergenic | 30.0% | |
GAGAATGCAAAGAAAAATCT+TGG | + | chr3_2:30368007-30368026 | Msa0402370:CDS | 30.0% | |
! | TCTTTCAATGCTTTTCTTCA+TGG | + | chr3_2:30368262-30368281 | Msa0402370:intron | 30.0% |
TAAAGAATCGAACAAGTGAA+TGG | - | chr3_2:30368303-30368322 | None:intergenic | 30.0% | |
CTTTAGTCATCTCAACATTA+TGG | + | chr3_2:30368318-30368337 | Msa0402370:CDS | 30.0% | |
CTTGCTTTGCATTTATTCAT+AGG | + | chr3_2:30368458-30368477 | Msa0402370:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr3_2:30368497-30368516 | None:intergenic | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr3_2:30368495-30368514 | Msa0402370:CDS | 30.0% | |
! | AACTTTGAAAAACTTCTCCA+AGG | - | chr3_2:30368539-30368558 | None:intergenic | 30.0% |
! | TATGATGATGCTGATAATGA+CGG | + | chr3_2:30368586-30368605 | Msa0402370:CDS | 30.0% |
GATCTTCAAAACTTGAGAAA+AGG | - | chr3_2:30368654-30368673 | None:intergenic | 30.0% | |
CATGTCATATGTTTGAAAAC+AGG | + | chr3_2:30368734-30368753 | Msa0402370:CDS | 30.0% | |
TGTCATATGTTTGAAAACAG+GGG | + | chr3_2:30368736-30368755 | Msa0402370:CDS | 30.0% | |
! | AGAAAAATTTTAGATGCCTC+CGG | - | chr3_2:30369000-30369019 | None:intergenic | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr3_2:30369166-30369185 | None:intergenic | 30.0% |
! | AGTCTCTTCTTTGACTTAAT+TGG | - | chr3_2:30369190-30369209 | None:intergenic | 30.0% |
ATTATGAAAAAGCTAGGGAA+AGG | + | chr3_2:30369218-30369237 | Msa0402370:CDS | 30.0% | |
GGCAGAAATTCCTTATAAAT+CGG | + | chr3_2:30369239-30369258 | Msa0402370:CDS | 30.0% | |
TCCATGATTCTTCATTGCTA+GGG | - | chr3_2:30366357-30366376 | None:intergenic | 35.0% | |
TTCCATGATTCTTCATTGCT+AGG | - | chr3_2:30366358-30366377 | None:intergenic | 35.0% | |
GGTAACTATGCATATAACAC+TGG | + | chr3_2:30366421-30366440 | Msa0402370:CDS | 35.0% | |
GTTTGCTTAATCCTAACAAC+AGG | + | chr3_2:30366554-30366573 | Msa0402370:CDS | 35.0% | |
GAAAGTGAAAGAAAAACCTG+AGG | + | chr3_2:30366612-30366631 | Msa0402370:CDS | 35.0% | |
TGAAAGAAAAACCTGAGGAA+AGG | + | chr3_2:30366617-30366636 | Msa0402370:CDS | 35.0% | |
GAAAGAAAAACCTGAGGAAA+GGG | + | chr3_2:30366618-30366637 | Msa0402370:CDS | 35.0% | |
!! | AGCTGGAATATCTTTGAAGT+TGG | + | chr3_2:30366651-30366670 | Msa0402370:CDS | 35.0% |
CTAAGGTAACACGAATGATT+TGG | - | chr3_2:30366742-30366761 | None:intergenic | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr3_2:30366769-30366788 | Msa0402370:CDS | 35.0% | |
GAGAACGTCTAATGAAGTTA+TGG | + | chr3_2:30366831-30366850 | Msa0402370:CDS | 35.0% | |
TCTAATGAAGTTATGGGTCA+AGG | + | chr3_2:30366838-30366857 | Msa0402370:CDS | 35.0% | |
GACAATTCGTCAAAAAGAGA+TGG | + | chr3_2:30366918-30366937 | Msa0402370:CDS | 35.0% | |
AATTCGTCAAAAAGAGATGG+TGG | + | chr3_2:30366921-30366940 | Msa0402370:CDS | 35.0% | |
!!! | GCTAGTATTTTTTGGGTAGA+TGG | + | chr3_2:30367042-30367061 | Msa0402370:CDS | 35.0% |
! | TGCATGTTGCATTTTTGTTC+TGG | + | chr3_2:30367230-30367249 | Msa0402370:intron | 35.0% |
CTGGCATGTGTATTATAAGT+AGG | + | chr3_2:30367249-30367268 | Msa0402370:intron | 35.0% | |
AAATCCCTAAACAAACAGCA+TGG | - | chr3_2:30367338-30367357 | None:intergenic | 35.0% | |
!! | CTTCTGCCATTTGTTTTCAT+GGG | + | chr3_2:30367363-30367382 | Msa0402370:CDS | 35.0% |
!! | TTCTGCCATTTGTTTTCATG+GGG | + | chr3_2:30367364-30367383 | Msa0402370:CDS | 35.0% |
!! | CATCTTTCAGGTTTGATATC+TGG | - | chr3_2:30367402-30367421 | None:intergenic | 35.0% |
CAGATATCAAACCTGAAAGA+TGG | + | chr3_2:30367400-30367419 | Msa0402370:CDS | 35.0% | |
TTTGTCTCAAACCATCTTTC+AGG | - | chr3_2:30367414-30367433 | None:intergenic | 35.0% | |
ATTGAGTTTACGCATTGTTG+AGG | + | chr3_2:30367568-30367587 | Msa0402370:intron | 35.0% | |
TTGCGATTACAGACTACTAA+GGG | + | chr3_2:30367607-30367626 | Msa0402370:intron | 35.0% | |
TATCGTCTGTGGTTTCTTAT+TGG | - | chr3_2:30367900-30367919 | None:intergenic | 35.0% | |
! | TCAATTCCGAATAGTTTTCC+AGG | + | chr3_2:30367950-30367969 | Msa0402370:CDS | 35.0% |
! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr3_2:30367962-30367981 | Msa0402370:CDS | 35.0% |
! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr3_2:30367963-30367982 | Msa0402370:CDS | 35.0% |
!!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr3_2:30367975-30367994 | Msa0402370:CDS | 35.0% |
! | AGCTTGCTTGTCTAAACTTA+CGG | + | chr3_2:30368163-30368182 | Msa0402370:intron | 35.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr3_2:30368332-30368351 | Msa0402370:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr3_2:30368333-30368352 | Msa0402370:CDS | 35.0% | |
TGGTGTGTACTTGTTTACAA+CGG | - | chr3_2:30368437-30368456 | None:intergenic | 35.0% | |
TGAATAAATGCAAAGCAAGC+TGG | - | chr3_2:30368457-30368476 | None:intergenic | 35.0% | |
TATGAGGAGGACATAACAAA+AGG | + | chr3_2:30368508-30368527 | Msa0402370:CDS | 35.0% | |
ATGAGGAGGACATAACAAAA+GGG | + | chr3_2:30368509-30368528 | Msa0402370:CDS | 35.0% | |
! | ATGATGATGCTGATAATGAC+GGG | + | chr3_2:30368587-30368606 | Msa0402370:CDS | 35.0% |
!! | ATCATGATCGACTTGATGAA+AGG | + | chr3_2:30368671-30368690 | Msa0402370:CDS | 35.0% |
!! | TCATGATCGACTTGATGAAA+GGG | + | chr3_2:30368672-30368691 | Msa0402370:CDS | 35.0% |
CTTCAAAACATGTCGACATA+AGG | - | chr3_2:30368764-30368783 | None:intergenic | 35.0% | |
!!! | TCGACATGTTTTGAAGATCT+TGG | + | chr3_2:30368768-30368787 | Msa0402370:CDS | 35.0% |
GAGGAGTTACTTCTTTCTAT+AGG | + | chr3_2:30369049-30369068 | Msa0402370:CDS | 35.0% | |
GCTACATTTGAAGACTTAGA+TGG | - | chr3_2:30369103-30369122 | None:intergenic | 35.0% | |
CCATGATTCTTCATTGCTAG+GGG | - | chr3_2:30366356-30366375 | None:intergenic | 40.0% | |
TCTGATGTTGTCCTGTTGTT+AGG | - | chr3_2:30366568-30366587 | None:intergenic | 40.0% | |
! | GCACGAAGAATCTTCCTTTT+TGG | + | chr3_2:30366869-30366888 | Msa0402370:CDS | 40.0% |
! | GAGTACATTTTGAACTGCCT+AGG | + | chr3_2:30367271-30367290 | Msa0402370:intron | 40.0% |
!! | GCTTCTGCCATTTGTTTTCA+TGG | + | chr3_2:30367362-30367381 | Msa0402370:CDS | 40.0% |
! | CGATCACACAAGACATTTTC+AGG | - | chr3_2:30367498-30367517 | None:intergenic | 40.0% |
CTTGCGATTACAGACTACTA+AGG | + | chr3_2:30367606-30367625 | Msa0402370:intron | 40.0% | |
GATTACAGACTACTAAGGGT+TGG | + | chr3_2:30367611-30367630 | Msa0402370:intron | 40.0% | |
TGGTCTGTATATATCGTCTG+TGG | - | chr3_2:30367911-30367930 | None:intergenic | 40.0% | |
ACAGACGATATATACAGACC+AGG | + | chr3_2:30367910-30367929 | Msa0402370:CDS | 40.0% | |
! | AGCAAGCTAAAGTCTGAAGT+TGG | - | chr3_2:30368151-30368170 | None:intergenic | 40.0% |
CTTACGGAAATCGTATGCAT+TGG | + | chr3_2:30368179-30368198 | Msa0402370:intron | 40.0% | |
!! | TATGCATTGGTCTTCAGCTT+GGG | + | chr3_2:30368192-30368211 | Msa0402370:intron | 40.0% |
! | GTCAAGTCACATTTTACAGC+TGG | + | chr3_2:30368214-30368233 | Msa0402370:intron | 40.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr3_2:30368298-30368317 | None:intergenic | 40.0% | |
TCCAAAACATCAACAGTGGA+AGG | - | chr3_2:30368613-30368632 | None:intergenic | 40.0% | |
TGCATCCAAAACATCAACAG+TGG | - | chr3_2:30368617-30368636 | None:intergenic | 40.0% | |
TTGAAGATCTTGGAGTTCCT+AGG | + | chr3_2:30368778-30368797 | Msa0402370:CDS | 40.0% | |
TATATTGCACATGACCACCT+AGG | - | chr3_2:30368798-30368817 | None:intergenic | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr3_2:30368880-30368899 | None:intergenic | 40.0% | |
TTGATATCGTTGTGCTTGAG+TGG | - | chr3_2:30368929-30368948 | None:intergenic | 40.0% | |
! | TACACGTTTTTGTGCAGATC+CGG | + | chr3_2:30368978-30368997 | Msa0402370:intron | 40.0% |
!! | TTAGATGGTGTCACAGATGA+TGG | - | chr3_2:30369088-30369107 | None:intergenic | 40.0% |
TCTTCAAATGTAGCTGCTGT+TGG | + | chr3_2:30369109-30369128 | Msa0402370:CDS | 40.0% | |
! | CTGTTGGTGAAACATTTGCT+GGG | + | chr3_2:30369125-30369144 | Msa0402370:CDS | 40.0% |
! | TGTTGGTGAAACATTTGCTG+GGG | + | chr3_2:30369126-30369145 | Msa0402370:CDS | 40.0% |
! | TTCTTTGAACTTTGGTGCAG+AGG | - | chr3_2:30369158-30369177 | None:intergenic | 40.0% |
CCCCTAGCAATGAAGAATCA+TGG | + | chr3_2:30366353-30366372 | Msa0402370:CDS | 45.0% | |
GACAACATCAGACAGTCCAT+TGG | + | chr3_2:30366576-30366595 | Msa0402370:CDS | 45.0% | |
GAAAAACCTGAGGAAAGGGT+TGG | + | chr3_2:30366622-30366641 | Msa0402370:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+AGG | - | chr3_2:30366631-30366650 | None:intergenic | 45.0% | |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3_2:30366634-30366653 | Msa0402370:CDS | 45.0% |
GAAGTTATGGGTCAAGGAGT+TGG | + | chr3_2:30366844-30366863 | Msa0402370:CDS | 45.0% | |
! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr3_2:30366925-30366944 | Msa0402370:CDS | 45.0% |
TGTCTTCTGCAGCATCAACT+TGG | - | chr3_2:30367020-30367039 | None:intergenic | 45.0% | |
CAGACTACTAAGGGTTGGAT+TGG | + | chr3_2:30367616-30367635 | Msa0402370:intron | 45.0% | |
AACACAATAACGCACTAGCC+TGG | - | chr3_2:30367931-30367950 | None:intergenic | 45.0% | |
CAAAGCCCATGAAAAACACC+TGG | - | chr3_2:30367971-30367990 | None:intergenic | 45.0% | |
!! | GTATGCATTGGTCTTCAGCT+TGG | + | chr3_2:30368191-30368210 | Msa0402370:intron | 45.0% |
GAGGGATAATCATGCTGAGT+TGG | + | chr3_2:30368351-30368370 | Msa0402370:CDS | 45.0% | |
! | TCATGCTGAGTTGGACTTCA+AGG | + | chr3_2:30368360-30368379 | Msa0402370:CDS | 45.0% |
CATAACAAAAGGGTCTGCCT+TGG | + | chr3_2:30368519-30368538 | Msa0402370:CDS | 45.0% | |
! | GCCTTCCACTGTTGATGTTT+TGG | + | chr3_2:30368609-30368628 | Msa0402370:CDS | 45.0% |
AAGATCTTGGAGTTCCTAGG+TGG | + | chr3_2:30368781-30368800 | Msa0402370:CDS | 45.0% | |
CTGAAATCGACCATCCATGT+TGG | + | chr3_2:30368892-30368911 | Msa0402370:intron | 45.0% | |
TTCTACACGGTTCTTGAAGC+TGG | + | chr3_2:30369016-30369035 | Msa0402370:CDS | 45.0% | |
TCTACACGGTTCTTGAAGCT+GGG | + | chr3_2:30369017-30369036 | Msa0402370:CDS | 45.0% | |
TGAAGCTGGGAAAAAAGCAG+AGG | + | chr3_2:30369030-30369049 | Msa0402370:CDS | 45.0% | |
! | GCTGTTGGTGAAACATTTGC+TGG | + | chr3_2:30369124-30369143 | Msa0402370:CDS | 45.0% |
GTTATGGGTCAAGGAGTTGG+AGG | + | chr3_2:30366847-30366866 | Msa0402370:CDS | 50.0% | |
!! | TGGGCTTTGTTCATGGCACA+TGG | + | chr3_2:30367982-30368001 | Msa0402370:CDS | 50.0% |
GTCTTCAGTGCCAACATGGA+TGG | - | chr3_2:30368905-30368924 | None:intergenic | 50.0% | |
TGGTGTCTTCAGTGCCAACA+TGG | - | chr3_2:30368909-30368928 | None:intergenic | 50.0% | |
! | ACGTTTTTGTGCAGATCCGG+AGG | + | chr3_2:30368981-30369000 | Msa0402370:intron | 50.0% |
ATCCCAACAGGCAGCTGATG+CGG | + | chr3_2:30368410-30368429 | Msa0402370:CDS | 55.0% | |
GACCGCATCAGCTGCCTGTT+GGG | - | chr3_2:30368415-30368434 | None:intergenic | 60.0% | |
GGACCGCATCAGCTGCCTGT+TGG | - | chr3_2:30368416-30368435 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 30366322 | 30369309 | 30366322 | ID=Msa0402370;Name=Msa0402370 |
chr3_2 | mRNA | 30366322 | 30369309 | 30366322 | ID=Msa0402370-mRNA-1;Parent=Msa0402370;Name=Msa0402370-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|0.8|1|1|5|0|747 |
chr3_2 | exon | 30366322 | 30367150 | 30366322 | ID=Msa0402370-mRNA-1:exon:6075;Parent=Msa0402370-mRNA-1 |
chr3_2 | exon | 30367352 | 30367444 | 30367352 | ID=Msa0402370-mRNA-1:exon:6076;Parent=Msa0402370-mRNA-1 |
chr3_2 | exon | 30367780 | 30368171 | 30367780 | ID=Msa0402370-mRNA-1:exon:6077;Parent=Msa0402370-mRNA-1 |
chr3_2 | exon | 30368295 | 30368909 | 30368295 | ID=Msa0402370-mRNA-1:exon:6078;Parent=Msa0402370-mRNA-1 |
chr3_2 | exon | 30368995 | 30369309 | 30368995 | ID=Msa0402370-mRNA-1:exon:6079;Parent=Msa0402370-mRNA-1 |
chr3_2 | CDS | 30366322 | 30367150 | 30366322 | ID=Msa0402370-mRNA-1:cds;Parent=Msa0402370-mRNA-1 |
chr3_2 | CDS | 30367352 | 30367444 | 30367352 | ID=Msa0402370-mRNA-1:cds;Parent=Msa0402370-mRNA-1 |
chr3_2 | CDS | 30367780 | 30368171 | 30367780 | ID=Msa0402370-mRNA-1:cds;Parent=Msa0402370-mRNA-1 |
chr3_2 | CDS | 30368295 | 30368909 | 30368295 | ID=Msa0402370-mRNA-1:cds;Parent=Msa0402370-mRNA-1 |
chr3_2 | CDS | 30368995 | 30369309 | 30368995 | ID=Msa0402370-mRNA-1:cds;Parent=Msa0402370-mRNA-1 |
Gene Sequence |
Protein sequence |