Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402410 | XP_013461367.1 | 87.500 | 64 | 8 | 0 | 1 | 64 | 1 | 64 | 5.33e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402410 | sp|Q9FX36|MYB54_ARATH | 78.431 | 51 | 11 | 0 | 14 | 64 | 4 | 54 | 2.37e-23 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402410 | A0A072V0T7 | 87.500 | 64 | 8 | 0 | 1 | 64 | 1 | 64 | 2.55e-31 | 119 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0402410 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402410 | MtrunA17_Chr3g0125801 | 87.500 | 64 | 8 | 0 | 1 | 64 | 1 | 64 | 4.91e-35 | 119 |
| Msa0402410 | MtrunA17_Chr7g0254261 | 70.370 | 54 | 16 | 0 | 11 | 64 | 84 | 137 | 6.77e-24 | 91.3 |
| Msa0402410 | MtrunA17_Chr6g0480581 | 74.510 | 51 | 13 | 0 | 14 | 64 | 2 | 52 | 8.05e-24 | 89.4 |
| Msa0402410 | MtrunA17_Chr4g0042501 | 74.074 | 54 | 14 | 0 | 11 | 64 | 100 | 153 | 3.71e-23 | 89.7 |
| Msa0402410 | MtrunA17_Chr5g0417621 | 72.222 | 54 | 15 | 0 | 11 | 64 | 129 | 182 | 8.98e-23 | 89.0 |
| Msa0402410 | MtrunA17_Chr6g0460671 | 55.224 | 67 | 27 | 1 | 1 | 64 | 81 | 147 | 8.64e-21 | 82.8 |
| Msa0402410 | MtrunA17_Chr6g0460661 | 66.667 | 48 | 16 | 0 | 17 | 64 | 17 | 64 | 1.87e-20 | 79.0 |
| Msa0402410 | MtrunA17_Chr5g0401731 | 56.250 | 48 | 21 | 0 | 17 | 64 | 16 | 63 | 2.00e-14 | 65.5 |
| Msa0402410 | MtrunA17_Chr4g0008551 | 60.417 | 48 | 19 | 0 | 17 | 64 | 39 | 86 | 2.03e-14 | 65.5 |
| Msa0402410 | MtrunA17_Chr5g0429661 | 58.333 | 48 | 20 | 0 | 17 | 64 | 123 | 170 | 8.24e-14 | 63.5 |
| Msa0402410 | MtrunA17_Chr3g0104501 | 58.333 | 48 | 20 | 0 | 17 | 64 | 134 | 181 | 8.82e-14 | 62.4 |
| Msa0402410 | MtrunA17_Chr4g0053431 | 56.250 | 48 | 21 | 0 | 17 | 64 | 6 | 53 | 9.01e-14 | 63.2 |
| Msa0402410 | MtrunA17_Chr5g0437321 | 54.167 | 48 | 22 | 0 | 17 | 64 | 20 | 67 | 1.79e-13 | 62.4 |
| Msa0402410 | MtrunA17_Chr6g0454921 | 54.167 | 48 | 22 | 0 | 17 | 64 | 16 | 63 | 9.29e-13 | 59.7 |
| Msa0402410 | MtrunA17_Chr3g0133601 | 56.250 | 48 | 21 | 0 | 17 | 64 | 38 | 85 | 1.03e-12 | 59.7 |
| Msa0402410 | MtrunA17_Chr4g0058991 | 48.333 | 60 | 31 | 0 | 5 | 64 | 198 | 257 | 2.44e-12 | 59.7 |
| Msa0402410 | MtrunA17_Chr7g0233161 | 52.083 | 48 | 23 | 0 | 17 | 64 | 300 | 347 | 3.06e-11 | 56.6 |
| Msa0402410 | MtrunA17_Chr3g0139671 | 50.000 | 48 | 24 | 0 | 17 | 64 | 86 | 133 | 3.99e-11 | 56.2 |
| Msa0402410 | MtrunA17_Chr3g0117511 | 52.083 | 48 | 23 | 0 | 17 | 64 | 184 | 231 | 5.90e-11 | 55.8 |
| Msa0402410 | MtrunA17_Chr5g0397841 | 52.174 | 46 | 22 | 0 | 19 | 64 | 113 | 158 | 7.19e-11 | 55.5 |
| Msa0402410 | MtrunA17_Chr1g0157731 | 47.917 | 48 | 25 | 0 | 17 | 64 | 92 | 139 | 9.64e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402410 | AT1G73410.1 | 78.431 | 51 | 11 | 0 | 14 | 64 | 4 | 54 | 2.40e-24 | 90.9 |
| Msa0402410 | AT1G73410.2 | 78.431 | 51 | 11 | 0 | 14 | 64 | 4 | 54 | 7.98e-24 | 89.0 |
| Msa0402410 | AT1G17950.1 | 76.471 | 51 | 12 | 0 | 14 | 64 | 3 | 53 | 8.57e-24 | 89.7 |
| Msa0402410 | AT1G69560.1 | 76.923 | 52 | 12 | 0 | 13 | 64 | 104 | 155 | 1.16e-22 | 88.2 |
| Msa0402410 | AT1G69560.2 | 76.923 | 52 | 12 | 0 | 13 | 64 | 120 | 171 | 1.47e-22 | 88.2 |
| Msa0402410 | AT1G26780.1 | 81.250 | 48 | 9 | 0 | 17 | 64 | 99 | 146 | 2.39e-22 | 86.7 |
| Msa0402410 | AT4G33450.1 | 71.154 | 52 | 15 | 0 | 13 | 64 | 16 | 67 | 4.88e-22 | 85.1 |
| Msa0402410 | AT1G26780.2 | 81.250 | 48 | 9 | 0 | 17 | 64 | 99 | 146 | 6.73e-22 | 86.3 |
| Msa0402410 | AT5G17800.1 | 67.273 | 55 | 18 | 0 | 10 | 64 | 87 | 141 | 1.19e-21 | 85.1 |
| Msa0402410 | AT3G29020.1 | 64.815 | 54 | 19 | 0 | 11 | 64 | 60 | 113 | 1.83e-21 | 83.2 |
| Msa0402410 | AT3G29020.2 | 64.815 | 54 | 19 | 0 | 11 | 64 | 62 | 115 | 5.84e-21 | 83.2 |
| Msa0402410 | AT5G67300.1 | 56.250 | 48 | 21 | 0 | 17 | 64 | 7 | 54 | 1.04e-13 | 63.5 |
| Msa0402410 | AT5G39700.1 | 51.786 | 56 | 27 | 0 | 9 | 64 | 49 | 104 | 2.93e-13 | 61.2 |
| Msa0402410 | AT3G50060.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 7 | 54 | 5.19e-13 | 61.6 |
| Msa0402410 | AT5G40360.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 159 | 206 | 6.09e-13 | 61.6 |
| Msa0402410 | AT3G27785.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 190 | 237 | 9.78e-13 | 61.2 |
| Msa0402410 | AT5G58850.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 106 | 153 | 2.89e-12 | 59.7 |
| Msa0402410 | AT2G39880.1 | 54.717 | 53 | 24 | 0 | 12 | 64 | 46 | 98 | 3.22e-12 | 59.7 |
| Msa0402410 | AT2G23290.1 | 52.083 | 48 | 23 | 0 | 17 | 64 | 14 | 61 | 5.40e-12 | 58.9 |
| Msa0402410 | AT3G09230.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 56 | 103 | 5.56e-12 | 58.9 |
| Msa0402410 | AT5G11050.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 106 | 153 | 6.56e-12 | 58.9 |
| Msa0402410 | AT4G37260.1 | 52.083 | 48 | 23 | 0 | 17 | 64 | 14 | 61 | 6.72e-12 | 58.5 |
| Msa0402410 | AT3G09370.3 | 54.167 | 48 | 22 | 0 | 17 | 64 | 144 | 191 | 1.01e-11 | 58.2 |
| Msa0402410 | AT3G09370.2 | 54.167 | 48 | 22 | 0 | 17 | 64 | 136 | 183 | 1.05e-11 | 58.2 |
| Msa0402410 | AT3G09370.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 131 | 178 | 1.06e-11 | 58.2 |
| Msa0402410 | AT5G11510.5 | 52.083 | 48 | 23 | 0 | 17 | 64 | 82 | 129 | 1.75e-11 | 57.8 |
| Msa0402410 | AT5G11510.3 | 52.083 | 48 | 23 | 0 | 17 | 64 | 82 | 129 | 1.77e-11 | 57.8 |
| Msa0402410 | AT5G11510.1 | 52.083 | 48 | 23 | 0 | 17 | 64 | 82 | 129 | 1.77e-11 | 57.8 |
| Msa0402410 | AT5G11510.4 | 52.083 | 48 | 23 | 0 | 17 | 64 | 82 | 129 | 1.77e-11 | 57.8 |
| Msa0402410 | AT5G11510.2 | 52.083 | 48 | 23 | 0 | 17 | 64 | 82 | 129 | 1.78e-11 | 57.4 |
| Msa0402410 | AT3G55730.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 57 | 104 | 3.80e-11 | 56.6 |
| Msa0402410 | AT4G18770.1 | 54.167 | 48 | 22 | 0 | 17 | 64 | 218 | 265 | 4.69e-11 | 56.2 |
| Msa0402410 | AT5G02320.1 | 50.000 | 48 | 24 | 0 | 17 | 64 | 128 | 175 | 9.87e-11 | 55.5 |
| Msa0402410 | AT5G02320.2 | 50.000 | 48 | 24 | 0 | 17 | 64 | 128 | 175 | 9.87e-11 | 55.5 |
Find 38 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCATTGAAATTTCTTATT+TGG | 0.138946 | 3_2:-30522541 | None:intergenic |
| ACAACATTATCAGTTCTTTC+AGG | 0.182418 | 3_2:-30522324 | None:intergenic |
| AACAATATGGTGCTCAAAAT+TGG | 0.232647 | 3_2:+30521902 | Msa0402410:CDS |
| ACATATTGTTTATAGAATTA+TGG | 0.251129 | 3_2:-30521751 | None:intergenic |
| AAAACCCTCCATATGGATTA+TGG | 0.286450 | 3_2:-30521797 | None:intergenic |
| TTCCCTTACACGACGAGAAT+TGG | 0.299194 | 3_2:+30522451 | Msa0402410:three_prime_UTR |
| CCTCAACTTGTTGAACAATA+TGG | 0.300197 | 3_2:+30521889 | Msa0402410:CDS |
| AAAGGTCTCTTGTTAATTCA+TGG | 0.340427 | 3_2:-30522222 | None:intergenic |
| ATGATAGTTCTCTTGCCTCT+TGG | 0.365489 | 3_2:+30522494 | Msa0402410:three_prime_UTR |
| ACTTCTCTTGCCACATAACT+TGG | 0.368979 | 3_2:-30522394 | None:intergenic |
| ATCGAATTCACATAAACAAA+TGG | 0.389392 | 3_2:+30522280 | Msa0402410:three_prime_UTR |
| GAATCATAGGCATGTTATAA+TGG | 0.391053 | 3_2:+30522350 | Msa0402410:three_prime_UTR |
| TATCCAATTCTCGTCGTGTA+AGG | 0.396192 | 3_2:-30522454 | None:intergenic |
| TCTTCTTCCTCTTCTGTGAA+AGG | 0.428456 | 3_2:-30522240 | None:intergenic |
| CAACATTATCAGTTCTTTCA+GGG | 0.435680 | 3_2:-30522323 | None:intergenic |
| ATAATGTTGTCAAGAATCAT+AGG | 0.447489 | 3_2:+30522337 | Msa0402410:three_prime_UTR |
| TGCAACTTCCATAATCCATA+TGG | 0.459728 | 3_2:+30521789 | Msa0402410:exon |
| TAGGGAAACGTTGTAGGTTG+AGG | 0.463106 | 3_2:+30522181 | Msa0402410:intron |
| AACTTGTAGGGAAACGTTGT+AGG | 0.477303 | 3_2:+30522175 | Msa0402410:intron |
| TCGAATTCACATAAACAAAT+GGG | 0.494256 | 3_2:+30522281 | Msa0402410:three_prime_UTR |
| CAAGAGACCTTTCACAGAAG+AGG | 0.503737 | 3_2:+30522233 | Msa0402410:three_prime_UTR |
| AGAGTTGTCCATGTGGTCAC+TGG | 0.512701 | 3_2:+30521842 | Msa0402410:CDS |
| ACGAGAATTGGATATGAGAA+TGG | 0.523637 | 3_2:+30522463 | Msa0402410:three_prime_UTR |
| TATAATGGCTACAAAACAAA+GGG | 0.531749 | 3_2:+30522365 | Msa0402410:three_prime_UTR |
| GTGACCACATGGACAACTCT+TGG | 0.543251 | 3_2:-30521839 | None:intergenic |
| GTGTAAGGGAAATTAAGTAT+AGG | 0.547906 | 3_2:-30522439 | None:intergenic |
| ATCCAATTCTCGTCGTGTAA+GGG | 0.553745 | 3_2:-30522453 | None:intergenic |
| CCATATTGTTCAACAAGTTG+AGG | 0.564383 | 3_2:-30521889 | None:intergenic |
| AGGGAACAATCCAAGTTATG+TGG | 0.586173 | 3_2:+30522384 | Msa0402410:three_prime_UTR |
| TTATAATGGCTACAAAACAA+AGG | 0.590289 | 3_2:+30522364 | Msa0402410:three_prime_UTR |
| AACTTCCATAATCCATATGG+AGG | 0.591013 | 3_2:+30521792 | Msa0402410:exon |
| GGAAACGTTGTAGGTTGAGG+TGG | 0.592608 | 3_2:+30522184 | Msa0402410:CDS |
| ATGGATTATGGAAGTTGCAG+AGG | 0.613374 | 3_2:-30521785 | None:intergenic |
| GCAGGTCGCCAGTGACCACA+TGG | 0.618887 | 3_2:-30521850 | None:intergenic |
| ACTTCCATAATCCATATGGA+GGG | 0.628080 | 3_2:+30521793 | Msa0402410:exon |
| CACAAAAGTAGAATTCCAAG+AGG | 0.669761 | 3_2:-30522509 | None:intergenic |
| GGAAGAAGAGAGACTACTTG+CGG | 0.685866 | 3_2:+30522254 | Msa0402410:three_prime_UTR |
| GATACCAAGAGTTGTCCATG+TGG | 0.733953 | 3_2:+30521835 | Msa0402410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATTTGAAAATTAAATA+AGG | - | chr3_2:30522016-30522035 | None:intergenic | 10.0% |
| !! | ATGAATTTGAAAATTAAATA+AGG | - | chr3_2:30522016-30522035 | None:intergenic | 10.0% |
| !! | ACATATTGTTTATAGAATTA+TGG | - | chr3_2:30521754-30521773 | None:intergenic | 15.0% |
| !! | AATTTGAAAATTAAATAAGG+AGG | - | chr3_2:30522013-30522032 | None:intergenic | 15.0% |
| !! | ACATATTGTTTATAGAATTA+TGG | - | chr3_2:30521754-30521773 | None:intergenic | 15.0% |
| !! | AATTTGAAAATTAAATAAGG+AGG | - | chr3_2:30522013-30522032 | None:intergenic | 15.0% |
| !! | AATATTACATAATACATACC+TGG | - | chr3_2:30521958-30521977 | None:intergenic | 20.0% |
| !!! | ATTTTTTCCTTTTAACTTGT+AGG | + | chr3_2:30522162-30522181 | Msa0402410:intron | 20.0% |
| !!! | TTTTTTCCTTTTAACTTGTA+GGG | + | chr3_2:30522163-30522182 | Msa0402410:intron | 20.0% |
| !! | AATATTACATAATACATACC+TGG | - | chr3_2:30521958-30521977 | None:intergenic | 20.0% |
| !!! | ATTTTTTCCTTTTAACTTGT+AGG | + | chr3_2:30522162-30522181 | Msa0402410:intron | 20.0% |
| !!! | TTTTTTCCTTTTAACTTGTA+GGG | + | chr3_2:30522163-30522182 | Msa0402410:intron | 20.0% |
| ! | ATCGAATTCACATAAACAAA+TGG | + | chr3_2:30522280-30522299 | Msa0402410:three_prime_UTR | 25.0% |
| ! | TCGAATTCACATAAACAAAT+GGG | + | chr3_2:30522281-30522300 | Msa0402410:three_prime_UTR | 25.0% |
| ! | ATAATGTTGTCAAGAATCAT+AGG | + | chr3_2:30522337-30522356 | Msa0402410:three_prime_UTR | 25.0% |
| ! | TTATAATGGCTACAAAACAA+AGG | + | chr3_2:30522364-30522383 | Msa0402410:three_prime_UTR | 25.0% |
| ! | TATAATGGCTACAAAACAAA+GGG | + | chr3_2:30522365-30522384 | Msa0402410:three_prime_UTR | 25.0% |
| ! | ATCGAATTCACATAAACAAA+TGG | + | chr3_2:30522280-30522299 | Msa0402410:three_prime_UTR | 25.0% |
| ! | TCGAATTCACATAAACAAAT+GGG | + | chr3_2:30522281-30522300 | Msa0402410:three_prime_UTR | 25.0% |
| ! | ATAATGTTGTCAAGAATCAT+AGG | + | chr3_2:30522337-30522356 | Msa0402410:three_prime_UTR | 25.0% |
| ! | TTATAATGGCTACAAAACAA+AGG | + | chr3_2:30522364-30522383 | Msa0402410:three_prime_UTR | 25.0% |
| ! | TATAATGGCTACAAAACAAA+GGG | + | chr3_2:30522365-30522384 | Msa0402410:three_prime_UTR | 25.0% |
| AACAATATGGTGCTCAAAAT+TGG | + | chr3_2:30521902-30521921 | Msa0402410:CDS | 30.0% | |
| TCAATTGCTGAAAAACTTCA+AGG | + | chr3_2:30521928-30521947 | Msa0402410:CDS | 30.0% | |
| AAAGGTCTCTTGTTAATTCA+TGG | - | chr3_2:30522225-30522244 | None:intergenic | 30.0% | |
| CAACATTATCAGTTCTTTCA+GGG | - | chr3_2:30522326-30522345 | None:intergenic | 30.0% | |
| ACAACATTATCAGTTCTTTC+AGG | - | chr3_2:30522327-30522346 | None:intergenic | 30.0% | |
| GAATCATAGGCATGTTATAA+TGG | + | chr3_2:30522350-30522369 | Msa0402410:three_prime_UTR | 30.0% | |
| GTGTAAGGGAAATTAAGTAT+AGG | - | chr3_2:30522442-30522461 | None:intergenic | 30.0% | |
| AACAATATGGTGCTCAAAAT+TGG | + | chr3_2:30521902-30521921 | Msa0402410:CDS | 30.0% | |
| TCAATTGCTGAAAAACTTCA+AGG | + | chr3_2:30521928-30521947 | Msa0402410:CDS | 30.0% | |
| AAAGGTCTCTTGTTAATTCA+TGG | - | chr3_2:30522225-30522244 | None:intergenic | 30.0% | |
| CAACATTATCAGTTCTTTCA+GGG | - | chr3_2:30522326-30522345 | None:intergenic | 30.0% | |
| ACAACATTATCAGTTCTTTC+AGG | - | chr3_2:30522327-30522346 | None:intergenic | 30.0% | |
| GAATCATAGGCATGTTATAA+TGG | + | chr3_2:30522350-30522369 | Msa0402410:three_prime_UTR | 30.0% | |
| GTGTAAGGGAAATTAAGTAT+AGG | - | chr3_2:30522442-30522461 | None:intergenic | 30.0% | |
| TGCAACTTCCATAATCCATA+TGG | + | chr3_2:30521789-30521808 | Msa0402410:exon | 35.0% | |
| AACTTCCATAATCCATATGG+AGG | + | chr3_2:30521792-30521811 | Msa0402410:exon | 35.0% | |
| ACTTCCATAATCCATATGGA+GGG | + | chr3_2:30521793-30521812 | Msa0402410:exon | 35.0% | |
| ! | AAAACCCTCCATATGGATTA+TGG | - | chr3_2:30521800-30521819 | None:intergenic | 35.0% |
| CAAAAGAAAAACCCTCCATA+TGG | - | chr3_2:30521807-30521826 | None:intergenic | 35.0% | |
| CCATATTGTTCAACAAGTTG+AGG | - | chr3_2:30521892-30521911 | None:intergenic | 35.0% | |
| !! | CCTCAACTTGTTGAACAATA+TGG | + | chr3_2:30521889-30521908 | Msa0402410:CDS | 35.0% |
| ACGTTTCCCTACAAGTTAAA+AGG | - | chr3_2:30522172-30522191 | None:intergenic | 35.0% | |
| ACGAGAATTGGATATGAGAA+TGG | + | chr3_2:30522463-30522482 | Msa0402410:three_prime_UTR | 35.0% | |
| CACAAAAGTAGAATTCCAAG+AGG | - | chr3_2:30522512-30522531 | None:intergenic | 35.0% | |
| TGCAACTTCCATAATCCATA+TGG | + | chr3_2:30521789-30521808 | Msa0402410:exon | 35.0% | |
| AACTTCCATAATCCATATGG+AGG | + | chr3_2:30521792-30521811 | Msa0402410:exon | 35.0% | |
| ACTTCCATAATCCATATGGA+GGG | + | chr3_2:30521793-30521812 | Msa0402410:exon | 35.0% | |
| ! | AAAACCCTCCATATGGATTA+TGG | - | chr3_2:30521800-30521819 | None:intergenic | 35.0% |
| CAAAAGAAAAACCCTCCATA+TGG | - | chr3_2:30521807-30521826 | None:intergenic | 35.0% | |
| CCATATTGTTCAACAAGTTG+AGG | - | chr3_2:30521892-30521911 | None:intergenic | 35.0% | |
| !! | CCTCAACTTGTTGAACAATA+TGG | + | chr3_2:30521889-30521908 | Msa0402410:CDS | 35.0% |
| ACGTTTCCCTACAAGTTAAA+AGG | - | chr3_2:30522172-30522191 | None:intergenic | 35.0% | |
| ACGAGAATTGGATATGAGAA+TGG | + | chr3_2:30522463-30522482 | Msa0402410:three_prime_UTR | 35.0% | |
| CACAAAAGTAGAATTCCAAG+AGG | - | chr3_2:30522512-30522531 | None:intergenic | 35.0% | |
| ! | ATGGATTATGGAAGTTGCAG+AGG | - | chr3_2:30521788-30521807 | None:intergenic | 40.0% |
| ! | GGAAGTTTTTCATCTTCAGC+AGG | - | chr3_2:30521871-30521890 | None:intergenic | 40.0% |
| GAAAAACTTCAAGGAAGACC+AGG | + | chr3_2:30521937-30521956 | Msa0402410:CDS | 40.0% | |
| AACTTGTAGGGAAACGTTGT+AGG | + | chr3_2:30522175-30522194 | Msa0402410:intron | 40.0% | |
| TCTTCTTCCTCTTCTGTGAA+AGG | - | chr3_2:30522243-30522262 | None:intergenic | 40.0% | |
| AGGGAACAATCCAAGTTATG+TGG | + | chr3_2:30522384-30522403 | Msa0402410:three_prime_UTR | 40.0% | |
| ACTTCTCTTGCCACATAACT+TGG | - | chr3_2:30522397-30522416 | None:intergenic | 40.0% | |
| ATCCAATTCTCGTCGTGTAA+GGG | - | chr3_2:30522456-30522475 | None:intergenic | 40.0% | |
| TATCCAATTCTCGTCGTGTA+AGG | - | chr3_2:30522457-30522476 | None:intergenic | 40.0% | |
| ATGATAGTTCTCTTGCCTCT+TGG | + | chr3_2:30522494-30522513 | Msa0402410:three_prime_UTR | 40.0% | |
| ! | ATGGATTATGGAAGTTGCAG+AGG | - | chr3_2:30521788-30521807 | None:intergenic | 40.0% |
| ! | GGAAGTTTTTCATCTTCAGC+AGG | - | chr3_2:30521871-30521890 | None:intergenic | 40.0% |
| GAAAAACTTCAAGGAAGACC+AGG | + | chr3_2:30521937-30521956 | Msa0402410:CDS | 40.0% | |
| AACTTGTAGGGAAACGTTGT+AGG | + | chr3_2:30522175-30522194 | Msa0402410:intron | 40.0% | |
| TCTTCTTCCTCTTCTGTGAA+AGG | - | chr3_2:30522243-30522262 | None:intergenic | 40.0% | |
| AGGGAACAATCCAAGTTATG+TGG | + | chr3_2:30522384-30522403 | Msa0402410:three_prime_UTR | 40.0% | |
| ACTTCTCTTGCCACATAACT+TGG | - | chr3_2:30522397-30522416 | None:intergenic | 40.0% | |
| ATCCAATTCTCGTCGTGTAA+GGG | - | chr3_2:30522456-30522475 | None:intergenic | 40.0% | |
| TATCCAATTCTCGTCGTGTA+AGG | - | chr3_2:30522457-30522476 | None:intergenic | 40.0% | |
| ATGATAGTTCTCTTGCCTCT+TGG | + | chr3_2:30522494-30522513 | Msa0402410:three_prime_UTR | 40.0% | |
| GATACCAAGAGTTGTCCATG+TGG | + | chr3_2:30521835-30521854 | Msa0402410:CDS | 45.0% | |
| TAGGGAAACGTTGTAGGTTG+AGG | + | chr3_2:30522181-30522200 | Msa0402410:intron | 45.0% | |
| CAAGAGACCTTTCACAGAAG+AGG | + | chr3_2:30522233-30522252 | Msa0402410:three_prime_UTR | 45.0% | |
| GGAAGAAGAGAGACTACTTG+CGG | + | chr3_2:30522254-30522273 | Msa0402410:three_prime_UTR | 45.0% | |
| TTCCCTTACACGACGAGAAT+TGG | + | chr3_2:30522451-30522470 | Msa0402410:three_prime_UTR | 45.0% | |
| GATACCAAGAGTTGTCCATG+TGG | + | chr3_2:30521835-30521854 | Msa0402410:CDS | 45.0% | |
| TAGGGAAACGTTGTAGGTTG+AGG | + | chr3_2:30522181-30522200 | Msa0402410:intron | 45.0% | |
| CAAGAGACCTTTCACAGAAG+AGG | + | chr3_2:30522233-30522252 | Msa0402410:three_prime_UTR | 45.0% | |
| GGAAGAAGAGAGACTACTTG+CGG | + | chr3_2:30522254-30522273 | Msa0402410:three_prime_UTR | 45.0% | |
| TTCCCTTACACGACGAGAAT+TGG | + | chr3_2:30522451-30522470 | Msa0402410:three_prime_UTR | 45.0% | |
| !! | TATTATGTAATATTAATTAA+AGG | + | chr3_2:30521964-30521983 | Msa0402410:intron | 5.0% |
| !! | TATTATGTAATATTAATTAA+AGG | + | chr3_2:30521964-30521983 | Msa0402410:intron | 5.0% |
| GTGACCACATGGACAACTCT+TGG | - | chr3_2:30521842-30521861 | None:intergenic | 50.0% | |
| AGAGTTGTCCATGTGGTCAC+TGG | + | chr3_2:30521842-30521861 | Msa0402410:CDS | 50.0% | |
| ! | GGAAACGTTGTAGGTTGAGG+TGG | + | chr3_2:30522184-30522203 | Msa0402410:CDS | 50.0% |
| GTGACCACATGGACAACTCT+TGG | - | chr3_2:30521842-30521861 | None:intergenic | 50.0% | |
| AGAGTTGTCCATGTGGTCAC+TGG | + | chr3_2:30521842-30521861 | Msa0402410:CDS | 50.0% | |
| ! | GGAAACGTTGTAGGTTGAGG+TGG | + | chr3_2:30522184-30522203 | Msa0402410:CDS | 50.0% |
| GCAGGTCGCCAGTGACCACA+TGG | - | chr3_2:30521853-30521872 | None:intergenic | 65.0% | |
| GCAGGTCGCCAGTGACCACA+TGG | - | chr3_2:30521853-30521872 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 30521738 | 30522552 | 30521738 | ID=Msa0402410;Name=Msa0402410 |
| chr3_2 | mRNA | 30521738 | 30522552 | 30521738 | ID=Msa0402410-mRNA-1;Parent=Msa0402410;Name=Msa0402410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=70|1|1|1|1|1|2|325|64 |
| chr3_2 | exon | 30521738 | 30521958 | 30521738 | ID=Msa0402410-mRNA-1:exon:6113;Parent=Msa0402410-mRNA-1 |
| chr3_2 | exon | 30522184 | 30522552 | 30522184 | ID=Msa0402410-mRNA-1:exon:6114;Parent=Msa0402410-mRNA-1 |
| chr3_2 | five_prime_UTR | 30521738 | 30521807 | 30521738 | ID=Msa0402410-mRNA-1:five_prime_utr;Parent=Msa0402410-mRNA-1 |
| chr3_2 | CDS | 30521808 | 30521958 | 30521808 | ID=Msa0402410-mRNA-1:cds;Parent=Msa0402410-mRNA-1 |
| chr3_2 | CDS | 30522184 | 30522227 | 30522184 | ID=Msa0402410-mRNA-1:cds;Parent=Msa0402410-mRNA-1 |
| chr3_2 | three_prime_UTR | 30522228 | 30522552 | 30522228 | ID=Msa0402410-mRNA-1:three_prime_utr;Parent=Msa0402410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
