Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402430 | XP_039685680.1 | 76.537 | 797 | 83 | 6 | 1 | 724 | 35 | 800 | 0.0 | 1196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402430 | sp|Q9SZL8|FRS5_ARATH | 25.676 | 666 | 349 | 22 | 16 | 635 | 72 | 637 | 9.77e-47 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402430 | D3YBB9 | 66.911 | 819 | 154 | 7 | 3 | 743 | 69 | 848 | 0.0 | 1076 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0402430 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402430 | MtrunA17_Chr3g0088371 | 65.946 | 185 | 34 | 2 | 588 | 743 | 1 | 185 | 4.86e-70 | 227 |
| Msa0402430 | MtrunA17_Chr2g0324011 | 26.316 | 665 | 352 | 15 | 13 | 635 | 3 | 571 | 1.02e-69 | 239 |
| Msa0402430 | MtrunA17_Chr3g0082121 | 26.917 | 665 | 334 | 16 | 13 | 632 | 33 | 590 | 5.98e-63 | 223 |
| Msa0402430 | MtrunA17_Chr1g0202341 | 26.415 | 636 | 373 | 18 | 16 | 632 | 50 | 609 | 5.18e-58 | 209 |
| Msa0402430 | MtrunA17_Chr8g0363841 | 25.868 | 634 | 375 | 17 | 22 | 635 | 22 | 580 | 5.93e-52 | 192 |
| Msa0402430 | MtrunA17_Chr1g0164591 | 30.671 | 313 | 175 | 4 | 113 | 423 | 1 | 273 | 8.48e-49 | 175 |
| Msa0402430 | MtrunA17_Chr1g0172971 | 83.673 | 98 | 16 | 0 | 1 | 98 | 20 | 117 | 1.42e-48 | 180 |
| Msa0402430 | MtrunA17_Chr1g0203721 | 23.708 | 658 | 353 | 17 | 22 | 632 | 68 | 623 | 2.82e-48 | 183 |
| Msa0402430 | MtrunA17_Chr7g0258861 | 31.378 | 341 | 183 | 7 | 12 | 349 | 2 | 294 | 2.31e-46 | 167 |
| Msa0402430 | MtrunA17_Chr2g0296781 | 24.684 | 632 | 376 | 18 | 23 | 632 | 3 | 556 | 8.42e-46 | 175 |
| Msa0402430 | MtrunA17_Chr6g0458391 | 23.744 | 657 | 332 | 16 | 23 | 632 | 231 | 765 | 2.36e-44 | 171 |
| Msa0402430 | MtrunA17_Chr6g0477261 | 26.283 | 487 | 295 | 11 | 162 | 632 | 7 | 445 | 6.03e-42 | 162 |
| Msa0402430 | MtrunA17_Chr2g0287651 | 23.756 | 623 | 395 | 13 | 21 | 632 | 79 | 632 | 2.90e-41 | 162 |
| Msa0402430 | MtrunA17_Chr6g0475591 | 88.312 | 77 | 9 | 0 | 170 | 246 | 1 | 77 | 1.03e-39 | 140 |
| Msa0402430 | MtrunA17_Chr5g0441581 | 23.435 | 687 | 411 | 20 | 5 | 663 | 25 | 624 | 1.97e-39 | 155 |
| Msa0402430 | MtrunA17_Chr5g0448761 | 27.404 | 416 | 244 | 10 | 16 | 423 | 59 | 424 | 2.30e-39 | 156 |
| Msa0402430 | MtrunA17_Chr3g0118611 | 25.641 | 507 | 260 | 15 | 203 | 668 | 111 | 541 | 2.57e-37 | 149 |
| Msa0402430 | MtrunA17_Chr2g0329031 | 23.404 | 658 | 349 | 23 | 12 | 628 | 14 | 557 | 7.20e-37 | 148 |
| Msa0402430 | MtrunA17_Chr1g0198761 | 25.037 | 667 | 342 | 23 | 18 | 630 | 48 | 610 | 2.77e-36 | 146 |
| Msa0402430 | MtrunA17_Chr5g0440451 | 22.189 | 667 | 369 | 21 | 16 | 634 | 42 | 606 | 1.68e-34 | 141 |
| Msa0402430 | MtrunA17_Chr1g0207551 | 23.328 | 643 | 366 | 19 | 32 | 639 | 49 | 599 | 3.41e-33 | 137 |
| Msa0402430 | MtrunA17_Chr3g0080351 | 22.961 | 662 | 376 | 21 | 4 | 632 | 63 | 623 | 2.21e-32 | 134 |
| Msa0402430 | MtrunA17_Chr2g0290391 | 23.538 | 667 | 345 | 23 | 20 | 630 | 54 | 611 | 1.47e-31 | 131 |
| Msa0402430 | MtrunA17_Chr2g0291591 | 24.402 | 418 | 240 | 12 | 19 | 425 | 66 | 418 | 1.59e-30 | 127 |
| Msa0402430 | MtrunA17_Chr2g0276841 | 23.232 | 693 | 414 | 25 | 31 | 685 | 84 | 696 | 1.59e-30 | 128 |
| Msa0402430 | MtrunA17_Chr1g0203051 | 23.350 | 394 | 245 | 6 | 32 | 423 | 94 | 432 | 8.99e-30 | 125 |
| Msa0402430 | MtrunA17_Chr5g0431001 | 26.018 | 442 | 252 | 14 | 22 | 449 | 66 | 446 | 2.24e-29 | 122 |
| Msa0402430 | MtrunA17_Chr5g0448511 | 24.236 | 458 | 269 | 15 | 198 | 635 | 1 | 400 | 2.32e-29 | 123 |
| Msa0402430 | MtrunA17_Chr1g0196541 | 24.265 | 408 | 249 | 9 | 21 | 425 | 1 | 351 | 1.44e-28 | 122 |
| Msa0402430 | MtrunA17_Chr2g0287061 | 24.505 | 404 | 212 | 13 | 23 | 423 | 189 | 502 | 9.44e-25 | 110 |
| Msa0402430 | MtrunA17_Chr5g0409251 | 91.176 | 34 | 2 | 1 | 276 | 308 | 175 | 208 | 2.85e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402430 | AT4G38180.1 | 25.676 | 666 | 349 | 22 | 16 | 635 | 72 | 637 | 9.93e-48 | 181 |
| Msa0402430 | AT4G15090.1 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
| Msa0402430 | AT4G15090.5 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
| Msa0402430 | AT4G15090.3 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
| Msa0402430 | AT4G15090.2 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
| Msa0402430 | AT4G15090.4 | 23.296 | 631 | 373 | 18 | 32 | 635 | 66 | 612 | 2.62e-33 | 137 |
| Msa0402430 | AT5G28530.1 | 23.758 | 644 | 372 | 21 | 22 | 630 | 60 | 619 | 6.47e-32 | 132 |
| Msa0402430 | AT5G28530.3 | 23.950 | 643 | 368 | 20 | 22 | 630 | 60 | 615 | 1.15e-31 | 132 |
| Msa0402430 | AT5G28530.2 | 23.950 | 643 | 368 | 20 | 22 | 630 | 60 | 615 | 1.15e-31 | 132 |
| Msa0402430 | AT1G76320.3 | 23.364 | 642 | 342 | 19 | 32 | 632 | 12 | 544 | 1.92e-30 | 128 |
| Msa0402430 | AT1G76320.1 | 22.981 | 644 | 342 | 19 | 32 | 632 | 12 | 544 | 3.02e-30 | 127 |
| Msa0402430 | AT1G76320.4 | 22.981 | 644 | 342 | 19 | 32 | 632 | 12 | 544 | 3.02e-30 | 127 |
| Msa0402430 | AT1G76320.2 | 22.981 | 644 | 342 | 19 | 32 | 632 | 12 | 544 | 3.17e-30 | 127 |
| Msa0402430 | AT1G80010.1 | 23.369 | 659 | 358 | 24 | 23 | 632 | 101 | 661 | 3.40e-28 | 121 |
| Msa0402430 | AT3G06250.2 | 24.228 | 421 | 225 | 11 | 5 | 423 | 178 | 506 | 7.81e-28 | 120 |
| Msa0402430 | AT3G06250.1 | 24.228 | 421 | 225 | 11 | 5 | 423 | 178 | 506 | 7.81e-28 | 120 |
| Msa0402430 | AT3G06250.3 | 24.228 | 421 | 225 | 11 | 5 | 423 | 178 | 506 | 7.81e-28 | 120 |
| Msa0402430 | AT3G22170.2 | 21.299 | 662 | 368 | 16 | 14 | 632 | 67 | 618 | 1.05e-27 | 120 |
| Msa0402430 | AT3G22170.1 | 21.299 | 662 | 368 | 16 | 14 | 632 | 67 | 618 | 1.05e-27 | 120 |
| Msa0402430 | AT2G32250.8 | 23.052 | 616 | 354 | 18 | 32 | 637 | 12 | 517 | 1.08e-27 | 120 |
| Msa0402430 | AT2G32250.7 | 23.052 | 616 | 354 | 18 | 32 | 637 | 12 | 517 | 1.10e-27 | 120 |
| Msa0402430 | AT1G10240.2 | 22.520 | 635 | 382 | 23 | 22 | 629 | 53 | 604 | 4.18e-27 | 117 |
| Msa0402430 | AT1G10240.1 | 22.520 | 635 | 382 | 23 | 22 | 629 | 53 | 604 | 4.18e-27 | 117 |
| Msa0402430 | AT2G27110.3 | 27.500 | 240 | 141 | 2 | 193 | 430 | 34 | 242 | 1.26e-26 | 116 |
| Msa0402430 | AT2G27110.2 | 27.500 | 240 | 141 | 2 | 193 | 430 | 179 | 387 | 1.33e-26 | 116 |
| Msa0402430 | AT2G27110.1 | 27.500 | 240 | 141 | 2 | 193 | 430 | 179 | 387 | 1.33e-26 | 116 |
| Msa0402430 | AT2G32250.5 | 22.465 | 641 | 375 | 19 | 7 | 637 | 30 | 558 | 4.30e-25 | 111 |
| Msa0402430 | AT5G18960.2 | 24.051 | 395 | 200 | 13 | 3 | 390 | 197 | 498 | 4.10e-23 | 105 |
| Msa0402430 | AT5G18960.1 | 24.051 | 395 | 200 | 13 | 3 | 390 | 197 | 498 | 4.10e-23 | 105 |
| Msa0402430 | AT2G32250.6 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.43e-22 | 103 |
| Msa0402430 | AT2G32250.1 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.43e-22 | 103 |
| Msa0402430 | AT2G32250.3 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.43e-22 | 103 |
| Msa0402430 | AT2G32250.2 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.81e-22 | 102 |
| Msa0402430 | AT2G32250.4 | 24.582 | 419 | 219 | 12 | 7 | 423 | 30 | 353 | 2.81e-22 | 102 |
| Msa0402430 | AT1G52520.1 | 22.516 | 644 | 369 | 23 | 23 | 632 | 91 | 638 | 3.91e-22 | 102 |
| Msa0402430 | AT4G38170.1 | 27.143 | 210 | 117 | 4 | 217 | 424 | 24 | 199 | 8.44e-21 | 97.4 |
Find 101 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTCTTCTTTGACTTAAT+TGG | 0.121298 | 3_2:+30584587 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 3_2:-30586004 | Msa0402430:intron |
| TATCGTCTGTGGTTTCTTAT+TGG | 0.203510 | 3_2:+30585877 | None:intergenic |
| CATCTTTCAGGTTTGATATC+TGG | 0.213065 | 3_2:+30586363 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.236375 | 3_2:+30584593 | None:intergenic |
| CTTTAGTCATCTCAACATTA+TGG | 0.239089 | 3_2:-30585456 | Msa0402430:CDS |
| TTTGTCTCAAACCATCTTTC+AGG | 0.239790 | 3_2:+30586351 | None:intergenic |
| CTTGCTTTGCATTTATTCAT+AGG | 0.265760 | 3_2:-30585316 | Msa0402430:CDS |
| TCTGATGTTGTCCTGTTGTT+AGG | 0.288908 | 3_2:+30587197 | None:intergenic |
| GCCTTCCACTGTTGATGTTT+TGG | 0.290838 | 3_2:-30585165 | Msa0402430:CDS |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 3_2:+30587006 | None:intergenic |
| GAGGAGTTACTTCTTTCTAT+AGG | 0.322739 | 3_2:-30584725 | Msa0402430:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 3_2:-30586690 | Msa0402430:CDS |
| CTAAGGTAACACGAATGATT+TGG | 0.324322 | 3_2:+30587023 | None:intergenic |
| TTTGTTTCATCCGATTTATA+AGG | 0.324732 | 3_2:+30584525 | None:intergenic |
| GCTGTTGGTGAAACATTTGC+TGG | 0.345953 | 3_2:-30584650 | Msa0402430:CDS |
| TTTAAGCCTGAAAACCAAAA+AGG | 0.346249 | 3_2:+30586879 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 3_2:+30585991 | None:intergenic |
| TTCTACACGGTTCTTGAAGC+TGG | 0.366559 | 3_2:-30584758 | Msa0402430:CDS |
| CATGTCATATGTTTGAAAAC+AGG | 0.389937 | 3_2:-30585040 | Msa0402430:CDS |
| TCATGCTGAGTTGGACTTCA+AGG | 0.393220 | 3_2:-30585414 | Msa0402430:CDS |
| GGCAGAAATTCCTTATAAAT+CGG | 0.397916 | 3_2:-30584535 | Msa0402430:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3_2:+30584611 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3_2:-30585282 | Msa0402430:CDS |
| GAGAACGTCTAATGAAGTTA+TGG | 0.402471 | 3_2:-30586931 | Msa0402430:CDS |
| GCTACATTTGAAGACTTAGA+TGG | 0.403122 | 3_2:+30584674 | None:intergenic |
| GACCGCATCAGCTGCCTGTT+GGG | 0.418984 | 3_2:+30585362 | None:intergenic |
| ATCGAACAAACAATATATAT+CGG | 0.421135 | 3_2:-30586641 | Msa0402430:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 3_2:+30585818 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_2:-30586993 | Msa0402430:CDS |
| CTGTTGGTGAAACATTTGCT+GGG | 0.432277 | 3_2:-30584649 | Msa0402430:CDS |
| AGCTGGAATATCTTTGAAGT+TGG | 0.433004 | 3_2:-30587111 | Msa0402430:CDS |
| AACAATATATATCGGCCATT+AGG | 0.437083 | 3_2:-30586633 | Msa0402430:intron |
| GATCTTCAAAACTTGAGAAA+AGG | 0.437597 | 3_2:+30585123 | None:intergenic |
| TTCTTTGAACTTTGGTGCAG+AGG | 0.441734 | 3_2:+30584619 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3_2:-30587128 | Msa0402430:CDS |
| TTGCTTTGCATTTATTCATA+GGG | 0.448231 | 3_2:-30585315 | Msa0402430:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 3_2:-30587076 | Msa0402430:CDS |
| GAATGATTTGGTTTATGTAA+TGG | 0.457469 | 3_2:+30587035 | None:intergenic |
| TCCATGATTCTTCATTGCTA+GGG | 0.459212 | 3_2:+30587408 | None:intergenic |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.459248 | 3_2:-30586918 | Msa0402430:CDS |
| CTTCAAAACATGTCGACATA+AGG | 0.462702 | 3_2:+30585013 | None:intergenic |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 3_2:-30586963 | Msa0402430:CDS |
| AGAACGTCTAATGAAGTTAT+GGG | 0.466325 | 3_2:-30586930 | Msa0402430:CDS |
| GTTTGCTTAATCCTAACAAC+AGG | 0.467124 | 3_2:-30587208 | Msa0402430:CDS |
| TTCCATGATTCTTCATTGCT+AGG | 0.469455 | 3_2:+30587407 | None:intergenic |
| TTGAAGATCTTGGAGTTCCT+AGG | 0.473596 | 3_2:-30584996 | Msa0402430:CDS |
| ACAAAATAAGAAATCTGATA+AGG | 0.474392 | 3_2:-30587279 | Msa0402430:CDS |
| TATGAGGAGGACATAACAAA+AGG | 0.476915 | 3_2:-30585266 | Msa0402430:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_2:+30585280 | None:intergenic |
| CAGATATCAAACCTGAAAGA+TGG | 0.487871 | 3_2:-30586362 | Msa0402430:CDS |
| TTAGATGGTGTCACAGATGA+TGG | 0.489268 | 3_2:+30584689 | None:intergenic |
| CCCCTAGCAATGAAGAATCA+TGG | 0.491418 | 3_2:-30587409 | Msa0402430:CDS |
| CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 3_2:-30587245 | Msa0402430:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3_2:+30586745 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 3_2:+30587134 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3_2:-30585423 | Msa0402430:CDS |
| TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 3_2:-30587234 | Msa0402430:CDS |
| TCTACACGGTTCTTGAAGCT+GGG | 0.514580 | 3_2:-30584757 | Msa0402430:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.515275 | 3_2:-30585442 | Msa0402430:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3_2:+30585474 | None:intergenic |
| TCATGATCGACTTGATGAAA+GGG | 0.522852 | 3_2:-30585102 | Msa0402430:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3_2:+30585285 | None:intergenic |
| ATCATGATCGACTTGATGAA+AGG | 0.531340 | 3_2:-30585103 | Msa0402430:CDS |
| ATGTCATATGTTTGAAAACA+GGG | 0.531727 | 3_2:-30585039 | Msa0402430:CDS |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 3_2:-30585792 | Msa0402430:CDS |
| CATAACAAAAGGGTCTGCCT+TGG | 0.539378 | 3_2:-30585255 | Msa0402430:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3_2:+30585479 | None:intergenic |
| ATGAGGAGGACATAACAAAA+GGG | 0.542077 | 3_2:-30585265 | Msa0402430:CDS |
| AGCAAGCTAAAGTCTGAAGT+TGG | 0.542907 | 3_2:+30585626 | None:intergenic |
| TGAATAAATGCAAAGCAAGC+TGG | 0.546449 | 3_2:+30585320 | None:intergenic |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 3_2:+30585846 | None:intergenic |
| AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 3_2:-30587233 | Msa0402430:CDS |
| TTCACAAACTCAATAACCAA+TGG | 0.554620 | 3_2:+30587170 | None:intergenic |
| GACAATATGTTATAAAACGT+TGG | 0.562457 | 3_2:-30584935 | Msa0402430:CDS |
| CCATGATTCTTCATTGCTAG+GGG | 0.566277 | 3_2:+30587409 | None:intergenic |
| TAAGATATATAGATGGGATG+TGG | 0.566406 | 3_2:-30587069 | Msa0402430:CDS |
| GGACCGCATCAGCTGCCTGT+TGG | 0.570695 | 3_2:+30585361 | None:intergenic |
| TCTAATGAAGTTATGGGTCA+AGG | 0.571062 | 3_2:-30586924 | Msa0402430:CDS |
| GGTAACTATGCATATAACAC+TGG | 0.575752 | 3_2:-30587341 | Msa0402430:CDS |
| GTCTTCAGTGCCAACATGGA+TGG | 0.576478 | 3_2:+30584872 | None:intergenic |
| TCCAAAACATCAACAGTGGA+AGG | 0.578008 | 3_2:+30585164 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3_2:-30586915 | Msa0402430:CDS |
| TTTGAGACAAACTTAAATGA+TGG | 0.580163 | 3_2:-30586339 | Msa0402430:intron |
| TCTTCAAATGTAGCTGCTGT+TGG | 0.582982 | 3_2:-30584665 | Msa0402430:CDS |
| ATCCCAACAGGCAGCTGATG+CGG | 0.586005 | 3_2:-30585364 | Msa0402430:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 3_2:-30585188 | Msa0402430:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 3_2:-30587075 | Msa0402430:CDS |
| GACAACATCAGACAGTCCAT+TGG | 0.604607 | 3_2:-30587186 | Msa0402430:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_2:-30585279 | Msa0402430:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 3_2:-30585187 | Msa0402430:CDS |
| TGTTGGTGAAACATTTGCTG+GGG | 0.623398 | 3_2:-30584648 | Msa0402430:CDS |
| TGTCATATGTTTGAAAACAG+GGG | 0.632114 | 3_2:-30585038 | Msa0402430:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_2:-30585441 | Msa0402430:CDS |
| TGGTCTGTATATATCGTCTG+TGG | 0.648431 | 3_2:+30585866 | None:intergenic |
| TATATTGCACATGACCACCT+AGG | 0.649929 | 3_2:+30584979 | None:intergenic |
| GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 3_2:+30584897 | None:intergenic |
| TGCATCCAAAACATCAACAG+TGG | 0.653669 | 3_2:+30585160 | None:intergenic |
| AAGATCTTGGAGTTCCTAGG+TGG | 0.662062 | 3_2:-30584993 | Msa0402430:CDS |
| TGGTGTGTACTTGTTTACAA+CGG | 0.684217 | 3_2:+30585340 | None:intergenic |
| ACAGACGATATATACAGACC+AGG | 0.696353 | 3_2:-30585864 | Msa0402430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATGAAAAATTGTTTTAA+TGG | - | chr3_2:30586274-30586293 | Msa0402430:intron | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr3_2:30584565-30584584 | Msa0402430:CDS | 20.0% |
| !! | ACAAAATAAGAAATCTGATA+AGG | - | chr3_2:30584648-30584667 | Msa0402430:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr3_2:30584851-30584870 | Msa0402430:intron | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr3_2:30584852-30584871 | Msa0402430:intron | 20.0% |
| !! | ATCGAACAAACAATATATAT+CGG | - | chr3_2:30585286-30585305 | Msa0402430:CDS | 20.0% |
| !! | TTCTTACTTATTTAAACTAC+AGG | - | chr3_2:30585470-30585489 | Msa0402430:CDS | 20.0% |
| !! | TCTTACTTATTTAAACTACA+GGG | - | chr3_2:30585471-30585490 | Msa0402430:CDS | 20.0% |
| !!! | ATTTATATTTTGAACTACCT+AGG | - | chr3_2:30585619-30585638 | Msa0402430:intron | 20.0% |
| !!! | TTTTGATGAGTTAACTAATT+TGG | - | chr3_2:30586204-30586223 | Msa0402430:intron | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr3_2:30586245-30586264 | Msa0402430:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr3_2:30586246-30586265 | Msa0402430:intron | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | - | chr3_2:30586278-30586297 | Msa0402430:intron | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | - | chr3_2:30584599-30584618 | Msa0402430:CDS | 25.0% |
| !!! | GAATGATTTGGTTTATGTAA+TGG | + | chr3_2:30584895-30584914 | None:intergenic | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | + | chr3_2:30585165-30585184 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr3_2:30585199-30585218 | Msa0402430:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr3_2:30585200-30585219 | Msa0402430:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr3_2:30585237-30585256 | Msa0402430:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | + | chr3_2:30585312-30585331 | None:intergenic | 25.0% |
| !! | TGTTTACTTTCATTTTGTTC+TGG | - | chr3_2:30585352-30585371 | Msa0402430:CDS | 25.0% |
| ! | CTTACTTATTTAAACTACAG+GGG | - | chr3_2:30585472-30585491 | Msa0402430:CDS | 25.0% |
| !! | TTTGAGACAAACTTAAATGA+TGG | - | chr3_2:30585588-30585607 | Msa0402430:intron | 25.0% |
| !! | GTTGTCTTTTGTTCTAATAT+AGG | - | chr3_2:30585895-30585914 | Msa0402430:CDS | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr3_2:30585939-30585958 | None:intergenic | 25.0% |
| !!! | AGATAACAACTACTTTTGAT+TGG | - | chr3_2:30585999-30586018 | Msa0402430:intron | 25.0% |
| ! | CAAAAAATAATTATCCCAAC+AGG | - | chr3_2:30586551-30586570 | Msa0402430:intron | 25.0% |
| ! | TTGCTTTGCATTTATTCATA+GGG | - | chr3_2:30586612-30586631 | Msa0402430:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr3_2:30586645-30586664 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr3_2:30586645-30586664 | Msa0402430:CDS | 25.0% |
| ! | ATGTCATATGTTTGAAAACA+GGG | - | chr3_2:30586888-30586907 | Msa0402430:CDS | 25.0% |
| !! | CGTTTTATAACATATTGTCT+AGG | + | chr3_2:30586991-30587010 | None:intergenic | 25.0% |
| ! | GACAATATGTTATAAAACGT+TGG | - | chr3_2:30586992-30587011 | Msa0402430:CDS | 25.0% |
| !!! | GCATCTAAAATTTTTCTACA+CGG | - | chr3_2:30587156-30587175 | Msa0402430:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | + | chr3_2:30587337-30587356 | None:intergenic | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | - | chr3_2:30587365-30587384 | Msa0402430:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | - | chr3_2:30587366-30587385 | Msa0402430:CDS | 25.0% |
| ! | TTTGTTTCATCCGATTTATA+AGG | + | chr3_2:30587405-30587424 | None:intergenic | 25.0% |
| !!! | GATGAAGCTTTAAAAAAAAG+TGG | - | chr3_2:30587433-30587452 | Msa0402430:CDS | 25.0% |
| CGTTATGTTTGTAACAAACA+AGG | - | chr3_2:30584682-30584701 | Msa0402430:CDS | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | - | chr3_2:30584693-30584712 | Msa0402430:CDS | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | - | chr3_2:30584694-30584713 | Msa0402430:CDS | 30.0% | |
| TTCACAAACTCAATAACCAA+TGG | + | chr3_2:30584760-30584779 | None:intergenic | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr3_2:30584858-30584877 | Msa0402430:intron | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr3_2:30584924-30584943 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr3_2:30584964-30584983 | Msa0402430:CDS | 30.0% |
| AGAACGTCTAATGAAGTTAT+GGG | - | chr3_2:30584997-30585016 | Msa0402430:CDS | 30.0% | |
| !!! | AATCTTCCTTTTTGGTTTTC+AGG | - | chr3_2:30585042-30585061 | Msa0402430:CDS | 30.0% |
| TTTAAGCCTGAAAACCAAAA+AGG | + | chr3_2:30585051-30585070 | None:intergenic | 30.0% | |
| AACAATATATATCGGCCATT+AGG | - | chr3_2:30585294-30585313 | Msa0402430:CDS | 30.0% | |
| TAAGAACTATAGTCAAACCT+AGG | + | chr3_2:30585456-30585475 | None:intergenic | 30.0% | |
| ! | TTTAACCATGCTGTTTGTTT+AGG | - | chr3_2:30585495-30585514 | Msa0402430:intron | 30.0% |
| ! | TTAACCATGCTGTTTGTTTA+GGG | - | chr3_2:30585496-30585515 | Msa0402430:intron | 30.0% |
| AAAAACCCCATGAAAACAAA+TGG | + | chr3_2:30585537-30585556 | None:intergenic | 30.0% | |
| ! | CAAACTTAAATGATGGTGAT+TGG | - | chr3_2:30585595-30585614 | Msa0402430:intron | 30.0% |
| TTGTCTAAGTAAAAATGCCT+AGG | + | chr3_2:30585639-30585658 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr3_2:30585923-30585942 | Msa0402430:CDS | 30.0% | |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | - | chr3_2:30585956-30585975 | Msa0402430:CDS | 30.0% |
| AAAACACCTGGAAAACTATT+CGG | + | chr3_2:30586112-30586131 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | - | chr3_2:30586160-30586179 | Msa0402430:intron | 30.0% | |
| ! | TCTTTCAATGCTTTTCTTCA+TGG | - | chr3_2:30586415-30586434 | Msa0402430:intron | 30.0% |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr3_2:30586456-30586475 | None:intergenic | 30.0% | |
| CTTTAGTCATCTCAACATTA+TGG | - | chr3_2:30586471-30586490 | Msa0402430:intron | 30.0% | |
| CTTGCTTTGCATTTATTCAT+AGG | - | chr3_2:30586611-30586630 | Msa0402430:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr3_2:30586650-30586669 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr3_2:30586648-30586667 | Msa0402430:CDS | 30.0% | |
| ! | AACTTTGAAAAACTTCTCCA+AGG | + | chr3_2:30586692-30586711 | None:intergenic | 30.0% |
| ! | TATGATGATGCTGATAATGA+CGG | - | chr3_2:30586739-30586758 | Msa0402430:CDS | 30.0% |
| GATCTTCAAAACTTGAGAAA+AGG | + | chr3_2:30586807-30586826 | None:intergenic | 30.0% | |
| CATGTCATATGTTTGAAAAC+AGG | - | chr3_2:30586887-30586906 | Msa0402430:CDS | 30.0% | |
| TGTCATATGTTTGAAAACAG+GGG | - | chr3_2:30586889-30586908 | Msa0402430:CDS | 30.0% | |
| ! | AGAAAAATTTTAGATGCCTC+CGG | + | chr3_2:30587153-30587172 | None:intergenic | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr3_2:30587319-30587338 | None:intergenic | 30.0% |
| ! | AGTCTCTTCTTTGACTTAAT+TGG | + | chr3_2:30587343-30587362 | None:intergenic | 30.0% |
| ATTATGAAAAAGCTAGGGAA+AGG | - | chr3_2:30587371-30587390 | Msa0402430:CDS | 30.0% | |
| GGCAGAAATTCCTTATAAAT+CGG | - | chr3_2:30587392-30587411 | Msa0402430:CDS | 30.0% | |
| TCCATGATTCTTCATTGCTA+GGG | + | chr3_2:30584522-30584541 | None:intergenic | 35.0% | |
| TTCCATGATTCTTCATTGCT+AGG | + | chr3_2:30584523-30584542 | None:intergenic | 35.0% | |
| GGTAACTATGCATATAACAC+TGG | - | chr3_2:30584586-30584605 | Msa0402430:CDS | 35.0% | |
| GTTTGCTTAATCCTAACAAC+AGG | - | chr3_2:30584719-30584738 | Msa0402430:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr3_2:30584777-30584796 | Msa0402430:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr3_2:30584782-30584801 | Msa0402430:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr3_2:30584783-30584802 | Msa0402430:intron | 35.0% | |
| !! | AGCTGGAATATCTTTGAAGT+TGG | - | chr3_2:30584816-30584835 | Msa0402430:intron | 35.0% |
| CTAAGGTAACACGAATGATT+TGG | + | chr3_2:30584907-30584926 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr3_2:30584934-30584953 | Msa0402430:CDS | 35.0% | |
| GAGAACGTCTAATGAAGTTA+TGG | - | chr3_2:30584996-30585015 | Msa0402430:CDS | 35.0% | |
| TCTAATGAAGTTATGGGTCA+AGG | - | chr3_2:30585003-30585022 | Msa0402430:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr3_2:30585083-30585102 | Msa0402430:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr3_2:30585086-30585105 | Msa0402430:CDS | 35.0% | |
| !!! | GCTAGTATTTTTTGGGTAGA+TGG | - | chr3_2:30585207-30585226 | Msa0402430:CDS | 35.0% |
| ! | TGCATGTTGCATTTTTGTTC+TGG | - | chr3_2:30585395-30585414 | Msa0402430:CDS | 35.0% |
| CTGGCATGTGTATTATAAGT+AGG | - | chr3_2:30585414-30585433 | Msa0402430:CDS | 35.0% | |
| AAATCCCTAAACAAACAGCA+TGG | + | chr3_2:30585503-30585522 | None:intergenic | 35.0% | |
| !! | CTTCTGCCATTTGTTTTCAT+GGG | - | chr3_2:30585528-30585547 | Msa0402430:intron | 35.0% |
| !! | TTCTGCCATTTGTTTTCATG+GGG | - | chr3_2:30585529-30585548 | Msa0402430:intron | 35.0% |
| !! | CATCTTTCAGGTTTGATATC+TGG | + | chr3_2:30585567-30585586 | None:intergenic | 35.0% |
| CAGATATCAAACCTGAAAGA+TGG | - | chr3_2:30585565-30585584 | Msa0402430:intron | 35.0% | |
| TTTGTCTCAAACCATCTTTC+AGG | + | chr3_2:30585579-30585598 | None:intergenic | 35.0% | |
| ATTGAGTTTACGCATTGTTG+AGG | - | chr3_2:30585733-30585752 | Msa0402430:CDS | 35.0% | |
| TTGCGATTACAGACTACTAA+GGG | - | chr3_2:30585772-30585791 | Msa0402430:CDS | 35.0% | |
| TATCGTCTGTGGTTTCTTAT+TGG | + | chr3_2:30586053-30586072 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr3_2:30586103-30586122 | Msa0402430:intron | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr3_2:30586115-30586134 | Msa0402430:intron | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr3_2:30586116-30586135 | Msa0402430:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr3_2:30586128-30586147 | Msa0402430:intron | 35.0% |
| ! | AGCTTGCTTGTCTAAACTTA+CGG | - | chr3_2:30586316-30586335 | Msa0402430:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr3_2:30586485-30586504 | Msa0402430:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr3_2:30586486-30586505 | Msa0402430:intron | 35.0% | |
| TGGTGTGTACTTGTTTACAA+CGG | + | chr3_2:30586590-30586609 | None:intergenic | 35.0% | |
| TGAATAAATGCAAAGCAAGC+TGG | + | chr3_2:30586610-30586629 | None:intergenic | 35.0% | |
| TATGAGGAGGACATAACAAA+AGG | - | chr3_2:30586661-30586680 | Msa0402430:CDS | 35.0% | |
| ATGAGGAGGACATAACAAAA+GGG | - | chr3_2:30586662-30586681 | Msa0402430:CDS | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | - | chr3_2:30586740-30586759 | Msa0402430:CDS | 35.0% |
| !! | ATCATGATCGACTTGATGAA+AGG | - | chr3_2:30586824-30586843 | Msa0402430:CDS | 35.0% |
| !! | TCATGATCGACTTGATGAAA+GGG | - | chr3_2:30586825-30586844 | Msa0402430:CDS | 35.0% |
| CTTCAAAACATGTCGACATA+AGG | + | chr3_2:30586917-30586936 | None:intergenic | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | - | chr3_2:30586921-30586940 | Msa0402430:CDS | 35.0% |
| GAGGAGTTACTTCTTTCTAT+AGG | - | chr3_2:30587202-30587221 | Msa0402430:CDS | 35.0% | |
| GCTACATTTGAAGACTTAGA+TGG | + | chr3_2:30587256-30587275 | None:intergenic | 35.0% | |
| CCATGATTCTTCATTGCTAG+GGG | + | chr3_2:30584521-30584540 | None:intergenic | 40.0% | |
| TCTGATGTTGTCCTGTTGTT+AGG | + | chr3_2:30584733-30584752 | None:intergenic | 40.0% | |
| ! | GCACGAAGAATCTTCCTTTT+TGG | - | chr3_2:30585034-30585053 | Msa0402430:CDS | 40.0% |
| ! | GAGTACATTTTGAACTGCCT+AGG | - | chr3_2:30585436-30585455 | Msa0402430:CDS | 40.0% |
| !! | GCTTCTGCCATTTGTTTTCA+TGG | - | chr3_2:30585527-30585546 | Msa0402430:intron | 40.0% |
| ! | CGATCACACAAGACATTTTC+AGG | + | chr3_2:30585663-30585682 | None:intergenic | 40.0% |
| CTTGCGATTACAGACTACTA+AGG | - | chr3_2:30585771-30585790 | Msa0402430:CDS | 40.0% | |
| GATTACAGACTACTAAGGGT+TGG | - | chr3_2:30585776-30585795 | Msa0402430:CDS | 40.0% | |
| TGGTCTGTATATATCGTCTG+TGG | + | chr3_2:30586064-30586083 | None:intergenic | 40.0% | |
| ACAGACGATATATACAGACC+AGG | - | chr3_2:30586063-30586082 | Msa0402430:intron | 40.0% | |
| ! | AGCAAGCTAAAGTCTGAAGT+TGG | + | chr3_2:30586304-30586323 | None:intergenic | 40.0% |
| CTTACGGAAATCGTATGCAT+TGG | - | chr3_2:30586332-30586351 | Msa0402430:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr3_2:30586345-30586364 | Msa0402430:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr3_2:30586367-30586386 | Msa0402430:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr3_2:30586451-30586470 | None:intergenic | 40.0% | |
| TCCAAAACATCAACAGTGGA+AGG | + | chr3_2:30586766-30586785 | None:intergenic | 40.0% | |
| TGCATCCAAAACATCAACAG+TGG | + | chr3_2:30586770-30586789 | None:intergenic | 40.0% | |
| TTGAAGATCTTGGAGTTCCT+AGG | - | chr3_2:30586931-30586950 | Msa0402430:CDS | 40.0% | |
| TATATTGCACATGACCACCT+AGG | + | chr3_2:30586951-30586970 | None:intergenic | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr3_2:30587033-30587052 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr3_2:30587082-30587101 | None:intergenic | 40.0% | |
| ! | TACACGTTTTTGTGCAGATC+CGG | - | chr3_2:30587131-30587150 | Msa0402430:CDS | 40.0% |
| !! | TTAGATGGTGTCACAGATGA+TGG | + | chr3_2:30587241-30587260 | None:intergenic | 40.0% |
| TCTTCAAATGTAGCTGCTGT+TGG | - | chr3_2:30587262-30587281 | Msa0402430:CDS | 40.0% | |
| ! | CTGTTGGTGAAACATTTGCT+GGG | - | chr3_2:30587278-30587297 | Msa0402430:CDS | 40.0% |
| ! | TGTTGGTGAAACATTTGCTG+GGG | - | chr3_2:30587279-30587298 | Msa0402430:CDS | 40.0% |
| ! | TTCTTTGAACTTTGGTGCAG+AGG | + | chr3_2:30587311-30587330 | None:intergenic | 40.0% |
| CCCCTAGCAATGAAGAATCA+TGG | - | chr3_2:30584518-30584537 | Msa0402430:CDS | 45.0% | |
| GACAACATCAGACAGTCCAT+TGG | - | chr3_2:30584741-30584760 | Msa0402430:CDS | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr3_2:30584787-30584806 | Msa0402430:intron | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr3_2:30584796-30584815 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr3_2:30584799-30584818 | Msa0402430:intron | 45.0% |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr3_2:30585009-30585028 | Msa0402430:CDS | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr3_2:30585090-30585109 | Msa0402430:CDS | 45.0% |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr3_2:30585185-30585204 | None:intergenic | 45.0% | |
| CAGACTACTAAGGGTTGGAT+TGG | - | chr3_2:30585781-30585800 | Msa0402430:CDS | 45.0% | |
| AACACAATAACGCACTAGCC+TGG | + | chr3_2:30586084-30586103 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr3_2:30586124-30586143 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr3_2:30586344-30586363 | Msa0402430:CDS | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr3_2:30586504-30586523 | Msa0402430:intron | 45.0% | |
| ! | TCATGCTGAGTTGGACTTCA+AGG | - | chr3_2:30586513-30586532 | Msa0402430:intron | 45.0% |
| CATAACAAAAGGGTCTGCCT+TGG | - | chr3_2:30586672-30586691 | Msa0402430:CDS | 45.0% | |
| ! | GCCTTCCACTGTTGATGTTT+TGG | - | chr3_2:30586762-30586781 | Msa0402430:CDS | 45.0% |
| AAGATCTTGGAGTTCCTAGG+TGG | - | chr3_2:30586934-30586953 | Msa0402430:CDS | 45.0% | |
| CTGAAATCGACCATCCATGT+TGG | - | chr3_2:30587045-30587064 | Msa0402430:CDS | 45.0% | |
| TTCTACACGGTTCTTGAAGC+TGG | - | chr3_2:30587169-30587188 | Msa0402430:CDS | 45.0% | |
| TCTACACGGTTCTTGAAGCT+GGG | - | chr3_2:30587170-30587189 | Msa0402430:CDS | 45.0% | |
| TGAAGCTGGGAAAAAAGCAG+AGG | - | chr3_2:30587183-30587202 | Msa0402430:CDS | 45.0% | |
| ! | GCTGTTGGTGAAACATTTGC+TGG | - | chr3_2:30587277-30587296 | Msa0402430:CDS | 45.0% |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr3_2:30585012-30585031 | Msa0402430:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr3_2:30586135-30586154 | Msa0402430:intron | 50.0% |
| GTCTTCAGTGCCAACATGGA+TGG | + | chr3_2:30587058-30587077 | None:intergenic | 50.0% | |
| TGGTGTCTTCAGTGCCAACA+TGG | + | chr3_2:30587062-30587081 | None:intergenic | 50.0% | |
| ! | ACGTTTTTGTGCAGATCCGG+AGG | - | chr3_2:30587134-30587153 | Msa0402430:CDS | 50.0% |
| ATCCCAACAGGCAGCTGATG+CGG | - | chr3_2:30586563-30586582 | Msa0402430:intron | 55.0% | |
| GACCGCATCAGCTGCCTGTT+GGG | + | chr3_2:30586568-30586587 | None:intergenic | 60.0% | |
| GGACCGCATCAGCTGCCTGT+TGG | + | chr3_2:30586569-30586588 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 30584487 | 30587462 | 30584487 | ID=Msa0402430;Name=Msa0402430 |
| chr3_2 | mRNA | 30584487 | 30587462 | 30584487 | ID=Msa0402430-mRNA-1;Parent=Msa0402430;Name=Msa0402430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.8|1|1|5|0|747 |
| chr3_2 | exon | 30586634 | 30587462 | 30586634 | ID=Msa0402430-mRNA-1:exon:6129;Parent=Msa0402430-mRNA-1 |
| chr3_2 | exon | 30586340 | 30586432 | 30586340 | ID=Msa0402430-mRNA-1:exon:6128;Parent=Msa0402430-mRNA-1 |
| chr3_2 | exon | 30585625 | 30586016 | 30585625 | ID=Msa0402430-mRNA-1:exon:6127;Parent=Msa0402430-mRNA-1 |
| chr3_2 | exon | 30584887 | 30585501 | 30584887 | ID=Msa0402430-mRNA-1:exon:6126;Parent=Msa0402430-mRNA-1 |
| chr3_2 | exon | 30584487 | 30584801 | 30584487 | ID=Msa0402430-mRNA-1:exon:6125;Parent=Msa0402430-mRNA-1 |
| chr3_2 | CDS | 30586634 | 30587462 | 30586634 | ID=Msa0402430-mRNA-1:cds;Parent=Msa0402430-mRNA-1 |
| chr3_2 | CDS | 30586340 | 30586432 | 30586340 | ID=Msa0402430-mRNA-1:cds;Parent=Msa0402430-mRNA-1 |
| chr3_2 | CDS | 30585625 | 30586016 | 30585625 | ID=Msa0402430-mRNA-1:cds;Parent=Msa0402430-mRNA-1 |
| chr3_2 | CDS | 30584887 | 30585501 | 30584887 | ID=Msa0402430-mRNA-1:cds;Parent=Msa0402430-mRNA-1 |
| chr3_2 | CDS | 30584487 | 30584801 | 30584487 | ID=Msa0402430-mRNA-1:cds;Parent=Msa0402430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
