AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0403240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403240 MtrunA17_Chr3g0093811 89.057 265 9 2 46 301 14 267 1.95e-158 442
Msa0403240 MtrunA17_Chr6g0452271 36.676 349 160 10 1 301 1 336 8.44e-57 186
Msa0403240 MtrunA17_Chr3g0103281 60.870 138 50 4 1 137 1 135 4.54e-49 166
Msa0403240 MtrunA17_Chr7g0217741 55.725 131 54 3 1 130 1 128 4.55e-42 147
Msa0403240 MtrunA17_Chr2g0281071 48.462 130 66 1 1 130 1 129 1.57e-41 146
Msa0403240 MtrunA17_Chr4g0048511 48.148 135 69 1 1 135 1 134 4.64e-41 145
Msa0403240 MtrunA17_Chr4g0042671 46.067 178 82 5 1 167 1 175 3.12e-40 144
Msa0403240 MtrunA17_Chr1g0193371 51.449 138 63 3 1 137 1 135 4.33e-40 143
Msa0403240 MtrunA17_Chr1g0211161 50.382 131 64 1 1 131 1 130 7.04e-40 139
Msa0403240 MtrunA17_Chr1g0193801 51.852 135 61 3 1 134 1 132 1.58e-39 142
Msa0403240 MtrunA17_Chr7g0270891 51.111 135 62 3 1 134 1 132 2.86e-39 141
Msa0403240 MtrunA17_Chr4g0057031 50.376 133 64 2 1 133 1 131 3.14e-39 139
Msa0403240 MtrunA17_Chr6g0453471 52.672 131 58 3 1 130 1 128 4.02e-39 140
Msa0403240 MtrunA17_Chr8g0349261 47.727 132 69 0 1 132 1 132 2.50e-38 137
Msa0403240 MtrunA17_Chr3g0117091 51.200 125 60 1 7 131 6 129 2.52e-38 138
Msa0403240 MtrunA17_Chr3g0115821 48.905 137 66 3 1 136 1 134 1.18e-37 136
Msa0403240 MtrunA17_Chr5g0410961 49.231 130 64 2 1 130 1 128 1.47e-37 136
Msa0403240 MtrunA17_Chr4g0039971 49.618 131 63 2 1 130 1 129 1.86e-37 136
Msa0403240 MtrunA17_Chr4g0028311 53.077 130 58 3 1 129 1 128 3.02e-37 135
Msa0403240 MtrunA17_Chr4g0037141 46.269 134 70 2 1 134 1 132 3.07e-37 134
Msa0403240 MtrunA17_Chr4g0058631 49.624 133 65 2 1 133 1 131 4.07e-37 135
Msa0403240 MtrunA17_Chr5g0434571 48.485 132 66 2 1 132 37 166 1.03e-36 134
Msa0403240 MtrunA17_Chr5g0395281 49.618 131 62 3 1 130 1 128 1.08e-36 133
Msa0403240 MtrunA17_Chr3g0110351 48.175 137 69 2 1 137 1 135 1.45e-36 132
Msa0403240 MtrunA17_Chr2g0323411 46.154 130 68 2 1 130 1 128 2.08e-36 132
Msa0403240 MtrunA17_Chr5g0400821 52.542 118 55 1 1 118 1 117 3.38e-36 132
Msa0403240 MtrunA17_Chr8g0385321 47.015 134 69 2 1 134 1 132 4.75e-36 131
Msa0403240 MtrunA17_Chr3g0135311 53.390 118 54 1 1 118 1 117 4.81e-36 132
Msa0403240 MtrunA17_Chr7g0228891 45.806 155 79 3 1 152 1 153 5.17e-36 130
Msa0403240 MtrunA17_Chr5g0435101 42.308 156 84 3 2 157 1 150 1.52e-35 127
Msa0403240 MtrunA17_Chr3g0131121 46.212 132 69 2 1 132 1 130 1.83e-35 129
Msa0403240 MtrunA17_Chr1g0152011 51.695 118 56 1 1 118 1 117 2.54e-35 130
Msa0403240 MtrunA17_Chr2g0309911 47.619 126 65 1 7 132 5 129 1.23e-34 127
Msa0403240 MtrunA17_Chr7g0271241 52.239 134 60 3 1 133 1 131 1.33e-34 129
Msa0403240 MtrunA17_Chr1g0151941 53.782 119 52 3 1 118 1 117 1.98e-34 125
Msa0403240 MtrunA17_Chr4g0044421 45.669 127 68 1 2 128 1 126 2.26e-34 124
Msa0403240 MtrunA17_Chr7g0264641 52.066 121 57 1 1 121 1 120 2.55e-34 125
Msa0403240 MtrunA17_Chr4g0022901 47.863 117 60 1 1 117 1 116 5.28e-34 125
Msa0403240 MtrunA17_Chr4g0022931 46.341 123 65 1 1 123 1 122 8.03e-34 124
Msa0403240 MtrunA17_Chr5g0417821 47.500 120 62 1 13 132 7 125 2.48e-33 124
Msa0403240 MtrunA17_Chr3g0121241 46.400 125 66 1 7 131 36 159 3.96e-33 123
Msa0403240 MtrunA17_Chr1g0187761 50.833 120 57 2 1 120 1 118 1.80e-32 120
Msa0403240 MtrunA17_Chr4g0022911 47.009 117 61 1 1 117 1 116 2.53e-32 121
Msa0403240 MtrunA17_Chr1g0203411 48.760 121 58 3 1 120 1 118 3.62e-32 120
Msa0403240 MtrunA17_Chr4g0068061 49.153 118 58 2 1 118 1 116 4.58e-32 121
Msa0403240 MtrunA17_Chr4g0054391 50.450 111 54 1 1 111 1 110 5.10e-32 120
Msa0403240 MtrunA17_Chr1g0167691 48.305 118 59 2 1 118 1 116 5.45e-32 119
Msa0403240 MtrunA17_Chr2g0327351 50.000 112 55 1 1 112 1 111 1.00e-31 120
Msa0403240 MtrunA17_Chr1g0167661 47.458 118 60 2 1 118 1 116 1.27e-31 118
Msa0403240 MtrunA17_Chr8g0342541 45.775 142 74 3 1 142 1 139 2.87e-31 119
Msa0403240 MtrunA17_Chr4g0070641 47.107 121 62 2 1 121 1 119 7.19e-31 114
Msa0403240 MtrunA17_Chr4g0072751 50.000 112 55 1 1 112 1 111 1.31e-30 117
Msa0403240 MtrunA17_Chr8g0342521 47.619 126 62 3 1 125 1 123 1.70e-30 117
Msa0403240 MtrunA17_Chr7g0247131 53.846 91 42 0 46 136 10 100 2.37e-30 115
Msa0403240 MtrunA17_Chr2g0323351 44.068 118 64 2 1 118 1 116 2.37e-30 115
Msa0403240 MtrunA17_Chr7g0275911 46.610 118 61 2 1 118 1 116 2.50e-30 115
Msa0403240 MtrunA17_Chr4g0070611 47.107 121 62 2 1 121 1 119 2.64e-30 116
Msa0403240 MtrunA17_Chr8g0387421 46.903 113 59 1 6 118 5 116 2.87e-30 116
Msa0403240 MtrunA17_Chr6g0487491 48.800 125 55 2 1 117 1 124 3.05e-30 115
Msa0403240 MtrunA17_Chr3g0092401 48.760 121 60 2 1 121 2 120 4.41e-30 115
Msa0403240 MtrunA17_Chr2g0330041 45.185 135 70 3 1 134 1 132 4.54e-30 117
Msa0403240 MtrunA17_Chr7g0217221 49.194 124 59 3 1 122 1 122 6.73e-30 114
Msa0403240 MtrunA17_Chr7g0254411 47.244 127 63 3 1 125 1 125 2.33e-29 114
Msa0403240 MtrunA17_Chr8g0346561 45.000 120 64 2 1 120 1 118 2.40e-29 113
Msa0403240 MtrunA17_Chr7g0261281 46.667 120 62 2 1 120 1 118 2.61e-29 112
Msa0403240 MtrunA17_Chr8g0342481 39.474 190 110 5 1 190 1 185 4.19e-29 114
Msa0403240 MtrunA17_Chr4g0060721 48.333 120 60 2 1 120 2 119 5.16e-29 113
Msa0403240 MtrunA17_Chr7g0274581 45.833 120 63 2 1 120 1 118 8.28e-29 109
Msa0403240 MtrunA17_Chr1g0203441 44.915 118 63 2 14 131 14 129 1.23e-28 110
Msa0403240 MtrunA17_Chr4g0022891 44.348 115 62 2 1 115 1 113 2.37e-28 109
Msa0403240 MtrunA17_Chr5g0397231 46.729 107 56 1 6 112 5 110 2.59e-28 111
Msa0403240 MtrunA17_Chr1g0194951 46.610 118 61 2 1 118 1 116 7.93e-28 110
Msa0403240 MtrunA17_Chr6g0453211 49.107 112 55 2 1 112 1 110 8.08e-28 109
Msa0403240 MtrunA17_Chr4g0055981 35.260 173 97 4 13 185 55 212 2.36e-27 106
Msa0403240 MtrunA17_Chr1g0194301 32.530 249 139 7 8 248 28 255 2.83e-27 107
Msa0403240 MtrunA17_Chr6g0470971 47.664 107 55 1 11 117 12 117 7.12e-27 106
Msa0403240 MtrunA17_Chr1g0168661 49.057 106 53 1 12 117 20 124 9.85e-27 105
Msa0403240 MtrunA17_Chr3g0080861 43.103 116 65 1 2 117 26 140 1.67e-26 108
Msa0403240 MtrunA17_Chr1g0209661 43.750 112 62 1 13 124 27 137 3.40e-26 105
Msa0403240 MtrunA17_Chr2g0328771 42.202 109 62 1 13 121 20 127 4.02e-26 105
Msa0403240 MtrunA17_Chr2g0311221 46.364 110 57 2 3 112 5 112 4.97e-26 105
Msa0403240 MtrunA17_Chr3g0099131 44.444 108 59 1 13 120 41 147 8.88e-26 106
Msa0403240 MtrunA17_Chr4g0032401 39.837 123 73 1 2 124 6 127 1.54e-25 103
Msa0403240 MtrunA17_Chr4g0022881 42.241 116 65 2 1 116 1 114 1.55e-25 101
Msa0403240 MtrunA17_Chr7g0228231 40.678 118 69 1 3 120 4 120 2.88e-25 100
Msa0403240 MtrunA17_Chr5g0434831 43.243 111 62 1 8 118 2 111 3.90e-25 99.4
Msa0403240 MtrunA17_Chr1g0186061 46.154 104 55 1 14 117 21 123 4.50e-25 100
Msa0403240 MtrunA17_Chr5g0434911 42.727 110 62 1 9 118 17 125 4.93e-25 101
Msa0403240 MtrunA17_Chr8g0354661 42.202 109 62 1 9 117 33 140 5.07e-25 104
Msa0403240 MtrunA17_Chr5g0434841 41.880 117 67 1 2 118 9 124 6.34e-25 102
Msa0403240 MtrunA17_Chr8g0343831 42.500 120 63 2 1 120 1 114 6.54e-25 100
Msa0403240 MtrunA17_Chr6g0450101 43.119 109 61 1 13 121 14 121 7.76e-25 99.4
Msa0403240 MtrunA17_Chr3g0088461 43.519 108 60 1 11 118 20 126 8.28e-25 102
Msa0403240 MtrunA17_Chr5g0401731 33.649 211 120 6 10 205 3 208 9.58e-25 101
Msa0403240 MtrunA17_Chr1g0194291 38.636 132 79 2 4 135 12 141 2.01e-24 99.4
Msa0403240 MtrunA17_Chr5g0434931 42.453 106 60 1 13 118 35 139 4.44e-24 99.0
Msa0403240 MtrunA17_Chr8g0360111 44.444 108 57 2 8 114 20 125 6.29e-24 98.2
Msa0403240 MtrunA17_Chr1g0192411 43.243 111 61 2 13 123 12 120 6.52e-24 100
Msa0403240 MtrunA17_Chr3g0133601 41.860 129 64 3 15 143 37 154 1.05e-23 96.7
Msa0403240 MtrunA17_Chr1g0180391 43.396 106 59 1 13 118 19 123 1.12e-23 96.7
Msa0403240 MtrunA17_Chr5g0441131 34.356 163 71 5 14 142 10 170 1.72e-23 95.1
Msa0403240 MtrunA17_Chr1g0154031 43.810 105 58 1 13 117 76 179 8.01e-23 97.4
Msa0403240 MtrunA17_Chr7g0269831 44.915 118 63 2 1 118 1 116 1.04e-22 96.3
Msa0403240 MtrunA17_Chr5g0440781 39.474 114 66 3 14 126 13 124 1.24e-22 92.8
Msa0403240 MtrunA17_Chr7g0228991 43.396 106 59 1 13 118 29 133 1.29e-22 94.7
Msa0403240 MtrunA17_Chr2g0327821 42.857 105 59 1 13 117 6 109 2.98e-22 92.8
Msa0403240 MtrunA17_Chr4g0030881 41.379 116 60 2 12 120 6 120 3.68e-22 93.2
Msa0403240 MtrunA17_Chr5g0440761 39.823 113 65 3 14 125 13 123 5.98e-22 92.8
Msa0403240 MtrunA17_Chr5g0441141 39.823 113 65 3 14 125 13 123 6.00e-22 92.8
Msa0403240 MtrunA17_Chr7g0220341 42.056 107 61 1 13 118 25 131 9.95e-22 92.4
Msa0403240 MtrunA17_Chr7g0240821 43.519 108 60 1 17 124 5 111 1.03e-21 91.3
Msa0403240 MtrunA17_Chr6g0454921 42.857 112 62 2 15 126 15 124 3.20e-21 89.7
Msa0403240 MtrunA17_Chr2g0322521 42.857 105 59 1 13 117 29 132 5.74e-21 92.0
Msa0403240 MtrunA17_Chr4g0068921 40.945 127 73 2 5 131 16 140 8.47e-21 88.2
Msa0403240 MtrunA17_Chr2g0293911 41.176 119 68 2 13 131 24 140 1.29e-20 90.1
Msa0403240 MtrunA17_Chr4g0008551 40.310 129 68 5 15 143 38 157 1.76e-20 90.1
Msa0403240 MtrunA17_Chr7g0229101 54.286 70 32 0 46 115 4 73 1.14e-19 85.5
Msa0403240 MtrunA17_Chr8g0334881 39.091 110 64 3 13 121 10 117 4.00e-19 85.9
Msa0403240 MtrunA17_Chr4g0053431 39.048 105 62 2 15 119 5 107 4.65e-19 85.1
Msa0403240 MtrunA17_Chr4g0013361 40.187 107 62 2 11 116 8 113 9.96e-19 84.3
Msa0403240 MtrunA17_Chr7g0229131 49.315 73 37 0 46 118 4 76 1.42e-18 81.3
Msa0403240 MtrunA17_Chr5g0395231 46.154 104 35 4 80 164 5 106 3.13e-18 82.4
Msa0403240 MtrunA17_Chr5g0429661 33.898 118 76 2 3 120 110 225 6.15e-18 83.2
Msa0403240 MtrunA17_Chr5g0434901 53.030 66 31 0 50 115 9 74 6.52e-18 78.2
Msa0403240 MtrunA17_Chr4g0058991 33.898 118 76 2 3 120 197 312 1.58e-17 82.4
Msa0403240 MtrunA17_Chr6g0480581 33.824 136 82 3 12 147 1 128 2.40e-17 79.7
Msa0403240 MtrunA17_Chr2g0323321 39.362 94 54 3 1 94 1 91 3.11e-17 76.3
Msa0403240 MtrunA17_Chr4g0042611 43.956 91 47 3 1 90 1 88 9.87e-17 73.9
Msa0403240 MtrunA17_Chr5g0417621 37.168 113 67 4 9 120 128 237 1.15e-16 79.7
Msa0403240 MtrunA17_Chr4g0042501 36.364 110 66 4 12 120 102 208 3.40e-16 78.6
Msa0403240 MtrunA17_Chr2g0294811 41.489 94 53 2 1 94 1 92 3.55e-16 73.6
Msa0403240 MtrunA17_Chr3g0117511 33.929 112 60 2 15 120 183 286 3.72e-16 78.6
Msa0403240 MtrunA17_Chr3g0125801 40.000 115 65 4 4 117 5 116 3.90e-16 77.0
Msa0403240 MtrunA17_Chr5g0437321 36.937 111 68 2 4 114 8 116 5.67e-16 76.6
Msa0403240 MtrunA17_Chr7g0238631 39.450 109 64 2 10 118 108 214 1.18e-15 77.0
Msa0403240 MtrunA17_Chr8g0342531 41.758 91 50 2 2 91 1 89 2.81e-15 72.4
Msa0403240 MtrunA17_Chr8g0342461 37.363 91 56 1 1 91 1 90 4.83e-15 70.9
Msa0403240 MtrunA17_Chr5g0395221 40.000 80 47 1 11 90 10 88 1.03e-14 68.6
Msa0403240 MtrunA17_Chr8g0342471 37.363 91 56 1 1 91 1 90 1.41e-14 69.7
Msa0403240 MtrunA17_Chr3g0099141 38.554 83 50 1 13 95 40 121 1.58e-14 69.7
Msa0403240 MtrunA17_Chr3g0139671 33.945 109 70 2 10 118 80 186 2.43e-14 73.6
Msa0403240 MtrunA17_Chr7g0254261 40.385 104 58 4 15 117 89 189 2.53e-14 72.4
Msa0403240 MtrunA17_Chr6g0460661 31.731 104 69 2 9 112 10 111 3.24e-14 69.3
Msa0403240 MtrunA17_Chr7g0228401 32.520 123 60 4 12 112 253 374 5.42e-14 72.0
Msa0403240 MtrunA17_Chr8g0342511 42.222 90 48 3 1 89 1 87 8.67e-14 66.2
Msa0403240 MtrunA17_Chr1g0157731 33.028 109 71 2 10 118 86 192 1.04e-13 71.6
Msa0403240 MtrunA17_Chr7g0228531 33.333 105 67 3 13 117 218 319 1.11e-13 70.9
Msa0403240 MtrunA17_Chr4g0042621 45.977 87 37 2 91 167 15 101 2.09e-13 69.7
Msa0403240 MtrunA17_Chr6g0460671 34.579 107 68 2 15 121 99 203 2.39e-13 69.7
Msa0403240 MtrunA17_Chr5g0434871 60.465 43 17 0 76 118 2 44 1.70e-12 62.0
Msa0403240 MtrunA17_Chr6g0453751 36.458 96 53 2 10 97 17 112 2.16e-12 63.5
Msa0403240 MtrunA17_Chr5g0397841 35.000 100 62 2 12 111 108 204 6.50e-12 65.9
Msa0403240 MtrunA17_Chr7g0228481 35.135 111 62 5 13 117 218 324 2.43e-11 63.9
Msa0403240 MtrunA17_Chr7g0233061 27.941 136 82 3 9 138 174 299 3.48e-11 63.2
Msa0403240 MtrunA17_Chr1g0177901 36.508 63 40 0 50 112 27 89 4.29e-11 61.6
Msa0403240 MtrunA17_Chr3g0145551 61.538 39 15 0 93 131 1 39 5.89e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403240 AT3G28470.1 40.000 330 149 10 1 297 1 314 2.19e-57 187
Msa0403240 AT5G56110.1 60.145 138 51 4 1 137 1 135 7.61e-49 165
Msa0403240 AT1G18960.1 36.982 338 145 14 1 301 1 307 1.20e-47 162
Msa0403240 AT4G21440.1 48.889 135 67 2 1 135 1 133 7.55e-41 145
Msa0403240 AT5G15310.4 54.198 131 56 3 1 130 1 128 1.11e-40 142
Msa0403240 AT4G17785.2 51.538 130 62 1 1 130 1 129 2.40e-40 144
Msa0403240 AT4G17785.1 51.538 130 62 1 1 130 1 129 4.03e-40 144
Msa0403240 AT3G01140.2 54.615 130 55 3 1 129 1 127 4.28e-40 143
Msa0403240 AT4G05100.1 48.462 130 66 1 1 130 1 129 5.62e-40 142
Msa0403240 AT5G15310.1 54.198 131 56 3 1 130 1 128 7.74e-40 142
Msa0403240 AT5G15310.2 54.198 131 56 3 1 130 1 128 8.10e-40 142
Msa0403240 AT4G28110.1 49.231 130 64 2 1 130 1 128 9.67e-40 140
Msa0403240 AT1G57560.1 43.605 172 84 5 1 166 1 165 1.23e-39 141
Msa0403240 AT1G57560.2 50.746 134 62 3 1 133 1 131 1.46e-39 140
Msa0403240 AT3G01140.1 53.846 130 56 3 1 129 44 170 2.77e-39 142
Msa0403240 AT1G18710.1 48.507 134 62 2 13 140 12 144 4.13e-39 138
Msa0403240 AT5G61420.2 49.206 126 63 1 7 132 6 130 1.44e-38 139
Msa0403240 AT5G16770.4 51.145 131 60 3 1 130 1 128 2.74e-38 138
Msa0403240 AT5G16770.3 51.145 131 60 3 1 130 1 128 2.74e-38 138
Msa0403240 AT4G34990.1 48.872 133 66 2 1 133 1 131 3.04e-38 136
Msa0403240 AT5G65230.1 49.231 130 64 2 1 130 1 128 3.77e-38 137
Msa0403240 AT5G07690.1 50.000 126 62 1 7 132 6 130 3.95e-38 138
Msa0403240 AT4G01680.3 49.254 134 66 2 1 134 1 132 4.05e-38 135
Msa0403240 AT5G16770.1 51.145 131 60 3 1 130 1 128 4.21e-38 137
Msa0403240 AT5G16770.2 51.145 131 60 3 1 130 1 128 4.21e-38 137
Msa0403240 AT1G74430.1 51.695 118 56 1 13 130 12 128 4.69e-38 136
Msa0403240 AT5G26660.1 51.515 132 60 3 1 131 1 129 4.71e-38 138
Msa0403240 AT1G09540.1 50.746 134 64 2 1 134 1 132 9.18e-38 137
Msa0403240 AT5G60890.1 48.855 131 65 2 1 131 1 129 9.88e-38 135
Msa0403240 AT1G18570.1 48.485 132 67 1 1 132 1 131 1.25e-37 137
Msa0403240 AT4G01680.1 49.254 134 66 2 1 134 1 132 1.41e-37 136
Msa0403240 AT3G02940.2 50.382 131 61 3 1 130 1 128 1.42e-37 135
Msa0403240 AT1G34670.1 49.635 137 65 3 1 136 1 134 1.97e-37 137
Msa0403240 AT3G02940.1 50.382 131 61 3 1 130 1 128 2.00e-37 135
Msa0403240 AT3G02940.3 50.382 131 61 3 1 130 1 128 2.00e-37 135
Msa0403240 AT1G66230.1 48.485 132 66 2 1 132 1 130 3.29e-37 134
Msa0403240 AT5G07700.1 50.833 120 58 1 13 132 12 130 5.55e-37 135
Msa0403240 AT5G07700.2 50.833 120 58 1 13 132 12 130 5.55e-37 135
Msa0403240 AT5G10280.1 36.515 241 128 9 5 223 4 241 1.16e-36 134
Msa0403240 AT4G12350.1 46.715 137 71 2 1 137 1 135 1.18e-36 132
Msa0403240 AT3G13540.1 48.837 129 65 1 3 131 13 140 2.11e-36 131
Msa0403240 AT5G54230.1 49.593 123 61 1 13 135 12 133 3.05e-36 132
Msa0403240 AT4G38620.1 46.565 131 68 2 1 131 1 129 7.72e-36 130
Msa0403240 AT4G22680.1 46.617 133 69 2 1 133 1 131 2.15e-35 129
Msa0403240 AT2G16720.1 47.287 129 66 2 1 129 1 127 2.21e-35 129
Msa0403240 AT4G37780.1 52.542 118 55 1 1 118 1 117 2.65e-35 129
Msa0403240 AT1G35515.1 48.438 128 64 2 1 128 1 126 5.79e-35 126
Msa0403240 AT3G61250.1 47.727 132 65 3 1 131 1 129 5.80e-35 128
Msa0403240 AT1G74080.1 45.802 131 69 2 1 131 1 129 7.41e-35 129
Msa0403240 AT3G49690.1 52.542 118 55 1 1 118 1 117 1.74e-34 127
Msa0403240 AT5G16600.1 41.916 167 95 2 1 167 1 165 1.77e-34 128
Msa0403240 AT5G14750.1 51.695 118 56 1 2 119 5 121 1.95e-34 124
Msa0403240 AT4G01680.2 45.205 146 66 3 1 134 1 144 2.82e-34 128
Msa0403240 AT1G22640.1 45.736 129 68 2 1 129 1 127 4.18e-34 125
Msa0403240 AT5G23000.1 53.782 119 52 3 1 118 1 117 4.29e-34 127
Msa0403240 AT4G09460.1 46.512 129 67 2 1 129 1 127 4.85e-34 124
Msa0403240 AT5G57620.1 50.847 118 57 1 1 118 1 117 8.50e-34 126
Msa0403240 AT5G14340.1 46.269 134 70 2 1 134 13 144 1.16e-33 124
Msa0403240 AT5G62320.1 43.796 137 70 2 3 133 4 139 1.90e-33 123
Msa0403240 AT2G36890.1 49.612 129 62 3 1 128 1 127 2.49e-33 124
Msa0403240 AT5G65790.1 50.000 118 58 1 1 118 1 117 5.02e-33 125
Msa0403240 AT2G36890.2 49.612 129 62 3 1 128 42 168 5.31e-33 124
Msa0403240 AT3G27920.1 48.718 117 59 1 2 118 3 118 1.14e-32 120
Msa0403240 AT5G40330.1 52.830 106 49 1 14 119 13 117 2.20e-32 119
Msa0403240 AT5G52600.1 45.455 132 62 2 8 130 7 137 6.27e-32 118
Msa0403240 AT3G12720.1 47.541 122 62 2 7 128 17 136 1.95e-31 119
Msa0403240 AT3G23250.1 50.000 118 57 2 1 118 1 116 3.33e-31 118
Msa0403240 AT1G79180.1 51.695 118 55 2 3 120 5 120 5.55e-31 118
Msa0403240 AT2G47460.1 45.185 135 72 2 1 135 1 133 1.39e-30 118
Msa0403240 AT3G62610.1 50.847 118 56 2 1 118 1 116 1.87e-30 117
Msa0403240 AT1G16490.1 49.573 117 57 2 3 119 5 119 3.15e-30 115
Msa0403240 AT3G47600.1 49.587 121 59 2 1 121 1 119 3.72e-30 116
Msa0403240 AT3G28910.1 48.387 124 62 2 1 124 1 122 5.89e-30 115
Msa0403240 AT5G62470.2 50.413 121 58 2 1 121 1 119 7.18e-30 116
Msa0403240 AT5G26660.2 54.839 93 42 0 39 131 6 98 9.03e-30 115
Msa0403240 AT1G63910.1 43.200 125 70 1 6 130 5 128 1.04e-29 116
Msa0403240 AT5G49330.1 48.305 118 59 2 1 118 1 116 1.58e-29 115
Msa0403240 AT3G13890.2 48.305 118 59 2 1 118 1 116 2.16e-29 115
Msa0403240 AT2G31180.1 48.333 120 60 2 1 120 1 118 2.49e-29 112
Msa0403240 AT1G74650.1 49.587 121 59 2 1 121 1 119 4.18e-29 114
Msa0403240 AT1G06180.1 49.153 118 58 2 1 118 1 116 5.71e-29 111
Msa0403240 AT1G56160.1 47.863 117 59 2 3 119 5 119 8.97e-29 112
Msa0403240 AT5G55020.1 47.706 109 56 1 12 120 25 132 9.63e-29 115
Msa0403240 AT3G12820.1 48.276 116 59 1 3 118 4 118 1.43e-28 110
Msa0403240 AT1G08810.1 48.333 120 60 2 1 120 1 118 3.06e-28 110
Msa0403240 AT4G26930.1 47.619 105 54 1 12 116 18 121 6.36e-28 111
Msa0403240 AT5G62470.1 50.413 121 57 3 1 121 1 118 6.85e-28 110
Msa0403240 AT5G35550.1 41.379 116 67 1 3 118 4 118 1.08e-27 108
Msa0403240 AT5G12870.1 45.872 109 58 1 13 121 18 125 1.15e-27 108
Msa0403240 AT1G25340.1 42.623 122 69 1 8 129 13 133 8.96e-27 106
Msa0403240 AT2G47190.1 42.149 121 69 1 4 124 11 130 1.33e-26 105
Msa0403240 AT3G13890.1 44.882 127 59 3 1 118 1 125 1.36e-26 107
Msa0403240 AT3G11440.2 44.037 109 60 1 9 117 37 144 1.44e-26 108
Msa0403240 AT1G68320.1 42.623 122 69 1 13 134 19 139 3.37e-26 105
Msa0403240 AT3G11440.3 44.037 109 60 1 9 117 37 144 3.61e-26 108
Msa0403240 AT3G11440.4 44.037 109 60 1 9 117 37 144 3.61e-26 108
Msa0403240 AT3G11440.1 44.037 109 60 1 9 117 37 144 3.61e-26 108
Msa0403240 AT2G32460.2 44.762 105 57 1 13 117 6 109 5.39e-26 107
Msa0403240 AT2G32460.1 44.762 105 57 1 13 117 18 121 6.06e-26 107
Msa0403240 AT3G01530.1 42.609 115 65 1 4 118 16 129 1.43e-25 101
Msa0403240 AT4G25560.1 46.154 104 55 1 14 117 11 113 2.61e-25 102
Msa0403240 AT1G48000.1 43.089 123 68 2 13 135 32 152 2.90e-25 101
Msa0403240 AT1G79180.2 40.397 151 55 3 3 120 5 153 4.63e-25 102
Msa0403240 AT4G13480.1 48.113 106 54 1 12 117 5 109 6.01e-25 101
Msa0403240 AT5G06100.1 44.340 106 58 1 12 117 31 135 9.71e-25 103
Msa0403240 AT3G24310.1 47.115 104 54 1 14 117 19 121 1.24e-24 100
Msa0403240 AT5G06100.5 44.340 106 58 1 12 117 31 135 2.09e-24 103
Msa0403240 AT5G06100.2 44.340 106 58 1 12 117 31 135 2.09e-24 103
Msa0403240 AT5G06100.3 44.340 106 58 1 12 117 31 135 2.09e-24 103
Msa0403240 AT5G06100.4 44.340 106 58 1 12 117 31 135 2.09e-24 103
Msa0403240 AT5G14750.3 57.692 78 30 1 42 119 13 87 3.91e-24 96.7
Msa0403240 AT1G66370.1 45.714 105 56 1 13 117 8 111 5.00e-24 98.2
Msa0403240 AT3G08500.1 44.340 106 58 1 13 118 30 134 5.67e-24 100
Msa0403240 AT3G27810.1 42.593 108 61 1 13 120 20 126 5.85e-24 97.8
Msa0403240 AT2G26960.1 40.650 123 68 3 4 123 8 128 6.96e-24 100
Msa0403240 AT5G40350.1 42.727 110 62 1 13 122 17 125 7.69e-24 97.1
Msa0403240 AT3G48920.1 42.056 107 59 2 14 119 19 123 1.34e-23 97.4
Msa0403240 AT1G71030.2 51.899 79 38 0 51 129 3 81 7.64e-23 93.6
Msa0403240 AT1G71030.1 51.899 79 38 0 51 129 17 95 9.81e-23 93.6
Msa0403240 AT5G52260.1 45.192 104 56 1 14 117 13 115 1.12e-22 95.1
Msa0403240 AT5G59780.3 45.192 104 56 1 14 117 9 111 1.14e-22 94.4
Msa0403240 AT3G30210.1 43.269 104 58 1 13 116 27 129 1.73e-22 94.7
Msa0403240 AT3G53200.1 37.410 139 78 2 9 147 5 134 3.31e-22 93.2
Msa0403240 AT1G25340.2 40.164 122 67 2 8 129 13 128 3.32e-22 94.0
Msa0403240 AT5G35550.2 54.167 72 33 0 47 118 50 121 3.55e-22 93.6
Msa0403240 AT3G46130.1 44.231 104 57 1 14 117 10 112 4.52e-22 93.2
Msa0403240 AT1G25340.3 40.164 122 67 2 8 129 13 128 5.62e-22 94.0
Msa0403240 AT3G47600.2 44.554 101 51 1 26 121 13 113 1.29e-21 93.6
Msa0403240 AT1G66380.1 46.667 105 55 1 13 117 8 111 6.35e-21 87.0
Msa0403240 AT3G06490.1 40.650 123 72 1 2 124 8 129 6.63e-21 91.3
Msa0403240 AT5G59780.2 51.316 76 37 0 45 120 18 93 1.87e-20 87.8
Msa0403240 AT3G46130.4 53.425 73 34 0 45 117 18 90 3.58e-20 87.8
Msa0403240 AT2G26950.1 36.232 138 82 4 18 151 21 156 3.68e-20 90.1
Msa0403240 AT3G46130.3 51.220 82 39 1 46 127 9 89 4.26e-20 87.4
Msa0403240 AT2G23290.1 43.810 105 57 2 15 119 13 115 6.80e-20 88.2
Msa0403240 AT3G12820.2 56.522 69 30 0 50 118 2 70 7.00e-20 85.9
Msa0403240 AT5G49620.1 41.964 112 64 1 13 124 26 136 1.02e-19 87.8
Msa0403240 AT3G60460.1 41.284 109 62 2 9 116 7 114 1.26e-19 87.4
Msa0403240 AT3G27810.2 50.000 74 37 0 47 120 4 77 1.37e-19 84.7
Msa0403240 AT1G66390.1 43.810 105 58 1 13 117 8 111 2.56e-19 85.5
Msa0403240 AT5G40350.2 50.000 76 38 0 47 122 5 80 2.69e-19 83.6
Msa0403240 AT1G22640.3 56.897 58 25 0 72 129 13 70 4.36e-19 84.0
Msa0403240 AT1G56650.1 40.984 122 61 2 13 134 8 118 8.50e-19 84.3
Msa0403240 AT3G53200.2 41.837 98 49 1 45 142 7 96 8.55e-19 83.2
Msa0403240 AT4G37260.1 32.121 165 99 3 4 168 2 153 8.62e-19 85.5
Msa0403240 AT5G67300.1 40.952 105 60 2 15 119 6 108 2.11e-18 84.0
Msa0403240 AT3G50060.1 41.905 105 59 2 15 119 6 108 2.82e-18 83.6
Msa0403240 AT1G69560.1 32.911 158 98 5 1 157 93 243 1.02e-17 82.4
Msa0403240 AT1G69560.2 32.911 158 98 5 1 157 109 259 1.13e-17 82.4
Msa0403240 AT1G26780.1 39.091 110 63 4 12 120 95 201 1.30e-17 81.6
Msa0403240 AT1G26780.2 39.091 110 63 4 12 120 95 201 2.24e-17 82.0
Msa0403240 AT5G61420.1 64.000 50 18 0 83 132 2 51 5.49e-17 79.7
Msa0403240 AT1G17950.1 38.679 106 63 2 12 117 2 105 5.72e-17 79.3
Msa0403240 AT2G39880.1 37.383 107 63 3 15 120 50 153 7.51e-17 80.5
Msa0403240 AT3G55730.1 37.037 108 64 3 15 121 56 160 9.25e-17 80.5
Msa0403240 AT5G14750.4 66.667 48 16 0 72 119 13 60 9.35e-17 75.9
Msa0403240 AT5G14750.2 66.667 48 16 0 72 119 13 60 9.35e-17 75.9
Msa0403240 AT3G09230.1 25.974 231 133 6 15 223 55 269 9.49e-17 80.5
Msa0403240 AT3G27785.1 35.000 120 76 2 1 120 175 292 1.03e-16 80.5
Msa0403240 AT5G02320.1 40.367 109 63 2 10 118 122 228 1.18e-16 80.5
Msa0403240 AT5G02320.2 40.367 109 63 2 10 118 122 228 1.18e-16 80.5
Msa0403240 AT5G02320.3 40.367 109 63 2 10 118 62 168 1.39e-16 80.1
Msa0403240 AT1G66380.3 55.556 72 32 0 46 117 7 78 2.12e-16 73.9
Msa0403240 AT5G49620.2 37.302 126 64 2 13 124 26 150 2.80e-16 78.2
Msa0403240 AT3G29020.1 36.364 110 66 4 12 120 62 168 2.99e-16 77.0
Msa0403240 AT3G09370.3 38.889 108 64 2 10 117 138 243 4.30e-16 79.0
Msa0403240 AT5G17800.1 36.752 117 70 4 2 117 80 193 5.00e-16 77.4
Msa0403240 AT3G09370.2 38.889 108 64 2 10 117 130 235 5.22e-16 78.6
Msa0403240 AT3G09370.1 38.889 108 64 2 10 117 125 230 5.73e-16 78.6
Msa0403240 AT1G73410.2 40.566 106 61 2 15 120 6 109 5.75e-16 75.5
Msa0403240 AT1G73410.1 40.566 106 61 2 15 120 6 109 8.48e-16 75.9
Msa0403240 AT3G29020.2 36.364 110 66 4 12 120 64 170 1.12e-15 76.3
Msa0403240 AT4G18770.1 30.769 130 86 3 9 138 211 336 1.22e-15 77.4
Msa0403240 AT5G58850.1 35.849 106 66 2 15 120 105 208 3.04e-15 76.3
Msa0403240 AT5G11510.5 33.945 109 70 2 10 118 76 182 8.53e-15 75.1
Msa0403240 AT5G11050.1 35.185 108 68 2 13 120 103 208 9.13e-15 74.7
Msa0403240 AT2G25230.1 32.812 128 82 2 1 126 12 137 9.27e-15 72.8
Msa0403240 AT5G11510.2 33.945 109 70 2 10 118 76 182 9.38e-15 75.1
Msa0403240 AT5G11510.3 33.945 109 70 2 10 118 76 182 1.09e-14 75.1
Msa0403240 AT5G11510.1 33.945 109 70 2 10 118 76 182 1.09e-14 75.1
Msa0403240 AT5G11510.4 33.945 109 70 2 10 118 76 182 1.09e-14 75.1
Msa0403240 AT5G15310.3 73.171 41 11 0 90 130 9 49 2.50e-14 71.6
Msa0403240 AT5G40360.1 32.110 109 72 2 8 116 151 257 3.23e-14 72.8
Msa0403240 AT3G23250.2 61.702 47 18 0 72 118 13 59 5.49e-14 70.5
Msa0403240 AT4G28110.2 65.854 41 14 0 90 130 4 44 7.88e-14 69.3
Msa0403240 AT1G74430.2 61.905 42 16 0 89 130 18 59 8.61e-14 69.3
Msa0403240 AT4G33450.1 38.182 110 64 4 9 117 13 119 1.13e-13 69.7
Msa0403240 AT4G32730.1 33.028 109 71 2 10 118 82 188 2.01e-13 71.2
Msa0403240 AT4G32730.5 33.028 109 71 2 10 118 82 188 2.17e-13 71.2
Msa0403240 AT4G32730.4 33.028 109 71 2 10 118 82 188 2.17e-13 71.2
Msa0403240 AT4G32730.3 33.028 109 71 2 10 118 82 188 2.17e-13 71.2
Msa0403240 AT4G32730.2 33.028 109 71 2 10 118 82 188 2.17e-13 71.2
Msa0403240 AT5G14340.2 50.943 53 25 1 83 134 2 54 3.49e-13 67.4
Msa0403240 AT4G00540.2 33.636 110 72 1 13 121 101 210 8.01e-13 68.9
Msa0403240 AT4G00540.1 33.636 110 72 1 13 121 99 208 9.50e-13 68.6
Msa0403240 AT5G59780.1 55.102 49 22 0 72 120 1 49 1.45e-12 65.1
Msa0403240 AT3G46130.2 53.571 56 25 1 72 127 1 55 2.03e-12 65.1
Msa0403240 AT1G22640.2 62.500 40 15 0 90 129 16 55 9.19e-12 63.2
Msa0403240 AT5G40430.1 35.616 73 47 0 50 122 86 158 8.20e-11 61.6

Find 42 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATAACTGTTTCCATTT+TGG 0.092201 3_2:+32802602 None:intergenic
TCTAAACTCATTGCTGATTA+TGG 0.130701 3_2:-32802717 Msa0403240:CDS
TAATCCAACATCAATGTTTA+TGG 0.159625 3_2:-32802517 Msa0403240:CDS
CTAAAATTTGTTGTTCTTGC+AGG 0.216669 3_2:+32802370 None:intergenic
TCTAAGCTTTCCTGAACTTT+TGG 0.228314 3_2:-32802247 Msa0403240:CDS
GAGAAAGGCTTGTGAGTAAC+AGG 0.271065 3_2:+32802738 None:intergenic
TAACGATTAGATCTTCTTCT+TGG 0.278556 3_2:+32802889 None:intergenic
AAAGCAATTGCCACCCAAAA+TGG 0.287493 3_2:-32802616 Msa0403240:CDS
AGAAAGTCATTCCAACTAAA+TGG 0.304797 3_2:+32802432 None:intergenic
GTCATATTAATCAAGACTTT+AGG 0.329393 3_2:-32802674 Msa0403240:CDS
ATCATAGCTCAACAACTTCC+TGG 0.362064 3_2:-32802834 Msa0403240:CDS
TGTTCTTGCAGGTTATTAGT+AGG 0.374223 3_2:+32802381 None:intergenic
ATTGCTGATTATGGAAATAT+AGG 0.383788 3_2:-32802708 Msa0403240:CDS
ACAATGATGTTAAGAACAAT+TGG 0.395885 3_2:-32802803 Msa0403240:CDS
GTTTCTTGTGTTGAAGGTAA+TGG 0.419625 3_2:+32802468 None:intergenic
AACGATTAGATCTTCTTCTT+GGG 0.424842 3_2:+32802890 None:intergenic
TTAACAGGTGTTAAGAGGTA+TGG 0.429021 3_2:-32802978 Msa0403240:intron
GATGGTTCCTCCAAAAGTTC+AGG 0.442409 3_2:+32802237 None:intergenic
AAGTTTGTTTCTTGTGTTGA+AGG 0.448562 3_2:+32802462 None:intergenic
GCTTCCATAAACATTGATGT+TGG 0.479934 3_2:+32802513 None:intergenic
TGGGTGGCAATTGCTTTGAT+AGG 0.480894 3_2:+32802622 None:intergenic
GTGTCATCAAAAGAGGTGTA+TGG 0.486661 3_2:-32803743 Msa0403240:CDS
GTGAACTTATCATCATGCTT+AGG 0.502782 3_2:+32802915 None:intergenic
GATAGACCACCTACTACCTA+TGG 0.517239 3_2:+32802854 None:intergenic
TCATTTGCCTCAGAGCATCA+TGG 0.525196 3_2:-32803693 Msa0403240:CDS
ACATCATTGTCTGTTCTCCC+AGG 0.541477 3_2:+32802816 None:intergenic
TCAGCAATGAGTTTAGAGAA+AGG 0.549669 3_2:+32802723 None:intergenic
TGGATTGTTATCAAAGAAAG+AGG 0.553257 3_2:-32802346 Msa0403240:CDS
TGAACTGATTAGTAATGGGA+TGG 0.554302 3_2:+32802219 None:intergenic
TCATAGCTCAACAACTTCCT+GGG 0.565623 3_2:-32802833 Msa0403240:CDS
TTCATGCAGCCATAGGTAGT+AGG 0.572814 3_2:-32802863 Msa0403240:CDS
GTTAAGCTTCATGCAGCCAT+AGG 0.575069 3_2:-32802870 Msa0403240:CDS
AAAAGAAGCTTTCTCAAATG+GGG 0.633115 3_2:-32802767 Msa0403240:CDS
TGATGCTCTGAGGCAAATGA+AGG 0.634067 3_2:+32803696 None:intergenic
ATCATGCTTAGGATCAGACA+TGG 0.654183 3_2:+32802926 None:intergenic
ATGCAGCCATAGGTAGTAGG+TGG 0.657431 3_2:-32802860 Msa0403240:CDS
TATTGGCAGAAAACATGGTG+AGG 0.658433 3_2:-32803788 None:intergenic
TGTCTGAGGATGATGAGACT+TGG 0.667702 3_2:+32802313 None:intergenic
CTCTACGAATGAAATGTCTG+AGG 0.670182 3_2:+32802299 None:intergenic
AACAGATCCATGATGCTCTG+AGG 0.676640 3_2:+32803686 None:intergenic
GCTGATTATGGAAATATAGG+TGG 0.681369 3_2:-32802705 Msa0403240:CDS
AGAAAGGCTTGTGAGTAACA+GGG 0.701057 3_2:+32802739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATTTTTAGCAAATT+TGG + chr3_2:32802587-32802606 None:intergenic 10.0%
!!! ATATATATTTTTAGCAAATT+TGG + chr3_2:32802587-32802606 None:intergenic 10.0%
!! TTAAATTACACATGAATATA+AGG - chr3_2:32802616-32802635 Msa0403240:CDS 15.0%
!! TGGATTATTATTATTATTAC+TGG + chr3_2:32803471-32803490 None:intergenic 15.0%
!! TTAAATTACACATGAATATA+AGG - chr3_2:32802616-32802635 Msa0403240:CDS 15.0%
!! TGGATTATTATTATTATTAC+TGG + chr3_2:32803471-32803490 None:intergenic 15.0%
!!! TTATTATCTTTTCCATCTTA+TGG - chr3_2:32802423-32802442 Msa0403240:CDS 20.0%
!!! ATATTTTTAGCAAATTTGGT+TGG + chr3_2:32802583-32802602 None:intergenic 20.0%
!!! AAATTGATTTTGATTGCATT+AGG - chr3_2:32802740-32802759 Msa0403240:CDS 20.0%
!!! GATAAGAATTTGTTTTTAAC+AGG - chr3_2:32803008-32803027 Msa0403240:intron 20.0%
!!! TTATTATCTTTTCCATCTTA+TGG - chr3_2:32802423-32802442 Msa0403240:CDS 20.0%
!!! ATATTTTTAGCAAATTTGGT+TGG + chr3_2:32802583-32802602 None:intergenic 20.0%
!!! AAATTGATTTTGATTGCATT+AGG - chr3_2:32802740-32802759 Msa0403240:CDS 20.0%
!!! GATAAGAATTTGTTTTTAAC+AGG - chr3_2:32803008-32803027 Msa0403240:intron 20.0%
! AAAAATAGTGTCATCAAAAG+AGG - chr3_2:32802251-32802270 Msa0403240:CDS 25.0%
! ATTTCTCATGTTAACACATA+TGG + chr3_2:32802404-32802423 None:intergenic 25.0%
! AAAACAAAGAAACCATAAGA+TGG + chr3_2:32802438-32802457 None:intergenic 25.0%
! TCAAAGTAACTAATGTTTCT+AGG + chr3_2:32802716-32802735 None:intergenic 25.0%
!! AGAAACATTAGTTACTTTGA+AGG - chr3_2:32802716-32802735 Msa0403240:CDS 25.0%
! ACAATGATGTTAAGAACAAT+TGG - chr3_2:32803198-32803217 Msa0403240:intron 25.0%
! AAAAAGAAGCTTTCTCAAAT+GGG - chr3_2:32803233-32803252 Msa0403240:intron 25.0%
!! ATTGCTGATTATGGAAATAT+AGG - chr3_2:32803293-32803312 Msa0403240:intron 25.0%
! GTCATATTAATCAAGACTTT+AGG - chr3_2:32803327-32803346 Msa0403240:intron 25.0%
!! TTCATAACTGTTTCCATTTT+GGG + chr3_2:32803401-32803420 None:intergenic 25.0%
!! ATTCATAACTGTTTCCATTT+TGG + chr3_2:32803402-32803421 None:intergenic 25.0%
!!! CATTTTCTACTTTTGTCATT+GGG + chr3_2:32803445-32803464 None:intergenic 25.0%
!!! TCATTTTCTACTTTTGTCAT+TGG + chr3_2:32803446-32803465 None:intergenic 25.0%
! TAATCCAACATCAATGTTTA+TGG - chr3_2:32803484-32803503 Msa0403240:intron 25.0%
! AAAAATAGTGTCATCAAAAG+AGG - chr3_2:32802251-32802270 Msa0403240:CDS 25.0%
! ATTTCTCATGTTAACACATA+TGG + chr3_2:32802404-32802423 None:intergenic 25.0%
! AAAACAAAGAAACCATAAGA+TGG + chr3_2:32802438-32802457 None:intergenic 25.0%
! TCAAAGTAACTAATGTTTCT+AGG + chr3_2:32802716-32802735 None:intergenic 25.0%
!! AGAAACATTAGTTACTTTGA+AGG - chr3_2:32802716-32802735 Msa0403240:CDS 25.0%
! ACAATGATGTTAAGAACAAT+TGG - chr3_2:32803198-32803217 Msa0403240:intron 25.0%
! AAAAAGAAGCTTTCTCAAAT+GGG - chr3_2:32803233-32803252 Msa0403240:intron 25.0%
!! ATTGCTGATTATGGAAATAT+AGG - chr3_2:32803293-32803312 Msa0403240:intron 25.0%
! GTCATATTAATCAAGACTTT+AGG - chr3_2:32803327-32803346 Msa0403240:intron 25.0%
!! TTCATAACTGTTTCCATTTT+GGG + chr3_2:32803401-32803420 None:intergenic 25.0%
!! ATTCATAACTGTTTCCATTT+TGG + chr3_2:32803402-32803421 None:intergenic 25.0%
!!! CATTTTCTACTTTTGTCATT+GGG + chr3_2:32803445-32803464 None:intergenic 25.0%
!!! TCATTTTCTACTTTTGTCAT+TGG + chr3_2:32803446-32803465 None:intergenic 25.0%
! TAATCCAACATCAATGTTTA+TGG - chr3_2:32803484-32803503 Msa0403240:intron 25.0%
!!! GTCTCTAACCTGTTTTTTTA+GGG + chr3_2:32802355-32802374 None:intergenic 30.0%
!!! AGTCTCTAACCTGTTTTTTT+AGG + chr3_2:32802356-32802375 None:intergenic 30.0%
! TAGGTTGAAAAGTTTACATC+AGG - chr3_2:32802759-32802778 Msa0403240:CDS 30.0%
!! CAGTAAAGTTGATGAATACA+TGG - chr3_2:32802976-32802995 Msa0403240:intron 30.0%
!! TGTTTTTAACAGGTGTTAAG+AGG - chr3_2:32803018-32803037 Msa0403240:intron 30.0%
AACGATTAGATCTTCTTCTT+GGG + chr3_2:32803114-32803133 None:intergenic 30.0%
TAACGATTAGATCTTCTTCT+TGG + chr3_2:32803115-32803134 None:intergenic 30.0%
GAAAAAGAAGCTTTCTCAAA+TGG - chr3_2:32803232-32803251 Msa0403240:intron 30.0%
AAAAGAAGCTTTCTCAAATG+GGG - chr3_2:32803234-32803253 Msa0403240:intron 30.0%
! TCTAAACTCATTGCTGATTA+TGG - chr3_2:32803284-32803303 Msa0403240:intron 30.0%
! AAGTTTGTTTCTTGTGTTGA+AGG + chr3_2:32803542-32803561 None:intergenic 30.0%
AGAAAGTCATTCCAACTAAA+TGG + chr3_2:32803572-32803591 None:intergenic 30.0%
!! CTAAAATTTGTTGTTCTTGC+AGG + chr3_2:32803634-32803653 None:intergenic 30.0%
! CTGCAAGAACAACAAATTTT+AGG - chr3_2:32803632-32803651 Msa0403240:intron 30.0%
! CAAGAACAACAAATTTTAGG+TGG - chr3_2:32803635-32803654 Msa0403240:intron 30.0%
TGGATTGTTATCAAAGAAAG+AGG - chr3_2:32803655-32803674 Msa0403240:intron 30.0%
!!! GTCTCTAACCTGTTTTTTTA+GGG + chr3_2:32802355-32802374 None:intergenic 30.0%
!!! AGTCTCTAACCTGTTTTTTT+AGG + chr3_2:32802356-32802375 None:intergenic 30.0%
! TAGGTTGAAAAGTTTACATC+AGG - chr3_2:32802759-32802778 Msa0403240:CDS 30.0%
!! CAGTAAAGTTGATGAATACA+TGG - chr3_2:32802976-32802995 Msa0403240:intron 30.0%
!! TGTTTTTAACAGGTGTTAAG+AGG - chr3_2:32803018-32803037 Msa0403240:intron 30.0%
AACGATTAGATCTTCTTCTT+GGG + chr3_2:32803114-32803133 None:intergenic 30.0%
TAACGATTAGATCTTCTTCT+TGG + chr3_2:32803115-32803134 None:intergenic 30.0%
GAAAAAGAAGCTTTCTCAAA+TGG - chr3_2:32803232-32803251 Msa0403240:intron 30.0%
AAAAGAAGCTTTCTCAAATG+GGG - chr3_2:32803234-32803253 Msa0403240:intron 30.0%
! TCTAAACTCATTGCTGATTA+TGG - chr3_2:32803284-32803303 Msa0403240:intron 30.0%
! AAGTTTGTTTCTTGTGTTGA+AGG + chr3_2:32803542-32803561 None:intergenic 30.0%
AGAAAGTCATTCCAACTAAA+TGG + chr3_2:32803572-32803591 None:intergenic 30.0%
!! CTAAAATTTGTTGTTCTTGC+AGG + chr3_2:32803634-32803653 None:intergenic 30.0%
! CTGCAAGAACAACAAATTTT+AGG - chr3_2:32803632-32803651 Msa0403240:intron 30.0%
! CAAGAACAACAAATTTTAGG+TGG - chr3_2:32803635-32803654 Msa0403240:intron 30.0%
TGGATTGTTATCAAAGAAAG+AGG - chr3_2:32803655-32803674 Msa0403240:intron 30.0%
ACTTCTGTCCCTAAAAAAAC+AGG - chr3_2:32802344-32802363 Msa0403240:CDS 35.0%
ACACATGAATATAAGGCAAG+CGG - chr3_2:32802623-32802642 Msa0403240:CDS 35.0%
!!! ATTGGTTTTGCCGTTCAAAA+AGG + chr3_2:32802669-32802688 None:intergenic 35.0%
AATGTTAGGTTTACGAGGAT+TGG + chr3_2:32802687-32802706 None:intergenic 35.0%
TTTCTAGGTCCATGAATGTT+AGG + chr3_2:32802701-32802720 None:intergenic 35.0%
AATGAAGCAGAGATACTTCT+CGG + chr3_2:32802915-32802934 None:intergenic 35.0%
TTAACAGGTGTTAAGAGGTA+TGG - chr3_2:32803023-32803042 Msa0403240:intron 35.0%
GTGAACTTATCATCATGCTT+AGG + chr3_2:32803089-32803108 None:intergenic 35.0%
TCAGCAATGAGTTTAGAGAA+AGG + chr3_2:32803281-32803300 None:intergenic 35.0%
GCTGATTATGGAAATATAGG+TGG - chr3_2:32803296-32803315 Msa0403240:intron 35.0%
! ATAACTGTTTCCATTTTGGG+TGG + chr3_2:32803398-32803417 None:intergenic 35.0%
!! TTCTACTTTTGTCATTGGGA+TGG + chr3_2:32803441-32803460 None:intergenic 35.0%
GCTTCCATAAACATTGATGT+TGG + chr3_2:32803491-32803510 None:intergenic 35.0%
GTTTCTTGTGTTGAAGGTAA+TGG + chr3_2:32803536-32803555 None:intergenic 35.0%
! ACTTTTCTGCACCATTTAGT+TGG - chr3_2:32803558-32803577 Msa0403240:intron 35.0%
TGTTCTTGCAGGTTATTAGT+AGG + chr3_2:32803623-32803642 None:intergenic 35.0%
! CTCATTTTCTTGATCGAGTA+TGG + chr3_2:32803729-32803748 None:intergenic 35.0%
! TCTAAGCTTTCCTGAACTTT+TGG - chr3_2:32803754-32803773 Msa0403240:CDS 35.0%
ACTTCTGTCCCTAAAAAAAC+AGG - chr3_2:32802344-32802363 Msa0403240:CDS 35.0%
ACACATGAATATAAGGCAAG+CGG - chr3_2:32802623-32802642 Msa0403240:CDS 35.0%
!!! ATTGGTTTTGCCGTTCAAAA+AGG + chr3_2:32802669-32802688 None:intergenic 35.0%
AATGTTAGGTTTACGAGGAT+TGG + chr3_2:32802687-32802706 None:intergenic 35.0%
TTTCTAGGTCCATGAATGTT+AGG + chr3_2:32802701-32802720 None:intergenic 35.0%
AATGAAGCAGAGATACTTCT+CGG + chr3_2:32802915-32802934 None:intergenic 35.0%
TTAACAGGTGTTAAGAGGTA+TGG - chr3_2:32803023-32803042 Msa0403240:intron 35.0%
GTGAACTTATCATCATGCTT+AGG + chr3_2:32803089-32803108 None:intergenic 35.0%
TCAGCAATGAGTTTAGAGAA+AGG + chr3_2:32803281-32803300 None:intergenic 35.0%
GCTGATTATGGAAATATAGG+TGG - chr3_2:32803296-32803315 Msa0403240:intron 35.0%
! ATAACTGTTTCCATTTTGGG+TGG + chr3_2:32803398-32803417 None:intergenic 35.0%
!! TTCTACTTTTGTCATTGGGA+TGG + chr3_2:32803441-32803460 None:intergenic 35.0%
GCTTCCATAAACATTGATGT+TGG + chr3_2:32803491-32803510 None:intergenic 35.0%
GTTTCTTGTGTTGAAGGTAA+TGG + chr3_2:32803536-32803555 None:intergenic 35.0%
! ACTTTTCTGCACCATTTAGT+TGG - chr3_2:32803558-32803577 Msa0403240:intron 35.0%
TGTTCTTGCAGGTTATTAGT+AGG + chr3_2:32803623-32803642 None:intergenic 35.0%
! CTCATTTTCTTGATCGAGTA+TGG + chr3_2:32803729-32803748 None:intergenic 35.0%
! TCTAAGCTTTCCTGAACTTT+TGG - chr3_2:32803754-32803773 Msa0403240:CDS 35.0%
! GTGTCATCAAAAGAGGTGTA+TGG - chr3_2:32802258-32802277 Msa0403240:CDS 40.0%
GCAAATTTGGTTGGACAGAA+AGG + chr3_2:32802574-32802593 None:intergenic 40.0%
CCATGAATGTTAGGTTTACG+AGG + chr3_2:32802692-32802711 None:intergenic 40.0%
CCTCGTAAACCTAACATTCA+TGG - chr3_2:32802689-32802708 Msa0403240:CDS 40.0%
! AGAGGTATGGAAAAAGTTGC+AGG - chr3_2:32803036-32803055 Msa0403240:intron 40.0%
ATGGAAAAAGTTGCAGGCTT+AGG - chr3_2:32803042-32803061 Msa0403240:intron 40.0%
ATCATGCTTAGGATCAGACA+TGG + chr3_2:32803078-32803097 None:intergenic 40.0%
ATCATAGCTCAACAACTTCC+TGG - chr3_2:32803167-32803186 Msa0403240:intron 40.0%
TCATAGCTCAACAACTTCCT+GGG - chr3_2:32803168-32803187 Msa0403240:intron 40.0%
AGAAAGGCTTGTGAGTAACA+GGG + chr3_2:32803265-32803284 None:intergenic 40.0%
AAAGCAATTGCCACCCAAAA+TGG - chr3_2:32803385-32803404 Msa0403240:intron 40.0%
! CTTTTGTCATTGGGATGGTT+TGG + chr3_2:32803436-32803455 None:intergenic 40.0%
CTCTACGAATGAAATGTCTG+AGG + chr3_2:32803705-32803724 None:intergenic 40.0%
! AAGCTTTCCTGAACTTTTGG+AGG - chr3_2:32803757-32803776 Msa0403240:CDS 40.0%
! GTGTCATCAAAAGAGGTGTA+TGG - chr3_2:32802258-32802277 Msa0403240:CDS 40.0%
GCAAATTTGGTTGGACAGAA+AGG + chr3_2:32802574-32802593 None:intergenic 40.0%
CCATGAATGTTAGGTTTACG+AGG + chr3_2:32802692-32802711 None:intergenic 40.0%
CCTCGTAAACCTAACATTCA+TGG - chr3_2:32802689-32802708 Msa0403240:CDS 40.0%
! AGAGGTATGGAAAAAGTTGC+AGG - chr3_2:32803036-32803055 Msa0403240:intron 40.0%
ATGGAAAAAGTTGCAGGCTT+AGG - chr3_2:32803042-32803061 Msa0403240:intron 40.0%
ATCATGCTTAGGATCAGACA+TGG + chr3_2:32803078-32803097 None:intergenic 40.0%
ATCATAGCTCAACAACTTCC+TGG - chr3_2:32803167-32803186 Msa0403240:intron 40.0%
TCATAGCTCAACAACTTCCT+GGG - chr3_2:32803168-32803187 Msa0403240:intron 40.0%
AGAAAGGCTTGTGAGTAACA+GGG + chr3_2:32803265-32803284 None:intergenic 40.0%
AAAGCAATTGCCACCCAAAA+TGG - chr3_2:32803385-32803404 Msa0403240:intron 40.0%
! CTTTTGTCATTGGGATGGTT+TGG + chr3_2:32803436-32803455 None:intergenic 40.0%
CTCTACGAATGAAATGTCTG+AGG + chr3_2:32803705-32803724 None:intergenic 40.0%
! AAGCTTTCCTGAACTTTTGG+AGG - chr3_2:32803757-32803776 Msa0403240:CDS 40.0%
!! TGATGCTCTGAGGCAAATGA+AGG + chr3_2:32802308-32802327 None:intergenic 45.0%
! TCATTTGCCTCAGAGCATCA+TGG - chr3_2:32802308-32802327 Msa0403240:CDS 45.0%
AACAGATCCATGATGCTCTG+AGG + chr3_2:32802318-32802337 None:intergenic 45.0%
GCAGAGATACTTCTCGGATT+AGG + chr3_2:32802909-32802928 None:intergenic 45.0%
GAAAAAGTTGCAGGCTTAGG+TGG - chr3_2:32803045-32803064 Msa0403240:intron 45.0%
GTTAAGCTTCATGCAGCCAT+AGG - chr3_2:32803131-32803150 Msa0403240:intron 45.0%
TTCATGCAGCCATAGGTAGT+AGG - chr3_2:32803138-32803157 Msa0403240:intron 45.0%
GATAGACCACCTACTACCTA+TGG + chr3_2:32803150-32803169 None:intergenic 45.0%
ACATCATTGTCTGTTCTCCC+AGG + chr3_2:32803188-32803207 None:intergenic 45.0%
GAGAAAGGCTTGTGAGTAAC+AGG + chr3_2:32803266-32803285 None:intergenic 45.0%
TGGGTGGCAATTGCTTTGAT+AGG + chr3_2:32803382-32803401 None:intergenic 45.0%
TGTCTGAGGATGATGAGACT+TGG + chr3_2:32803691-32803710 None:intergenic 45.0%
GATGGTTCCTCCAAAAGTTC+AGG + chr3_2:32803767-32803786 None:intergenic 45.0%
!! TGATGCTCTGAGGCAAATGA+AGG + chr3_2:32802308-32802327 None:intergenic 45.0%
! TCATTTGCCTCAGAGCATCA+TGG - chr3_2:32802308-32802327 Msa0403240:CDS 45.0%
AACAGATCCATGATGCTCTG+AGG + chr3_2:32802318-32802337 None:intergenic 45.0%
GCAGAGATACTTCTCGGATT+AGG + chr3_2:32802909-32802928 None:intergenic 45.0%
GAAAAAGTTGCAGGCTTAGG+TGG - chr3_2:32803045-32803064 Msa0403240:intron 45.0%
GTTAAGCTTCATGCAGCCAT+AGG - chr3_2:32803131-32803150 Msa0403240:intron 45.0%
TTCATGCAGCCATAGGTAGT+AGG - chr3_2:32803138-32803157 Msa0403240:intron 45.0%
GATAGACCACCTACTACCTA+TGG + chr3_2:32803150-32803169 None:intergenic 45.0%
ACATCATTGTCTGTTCTCCC+AGG + chr3_2:32803188-32803207 None:intergenic 45.0%
GAGAAAGGCTTGTGAGTAAC+AGG + chr3_2:32803266-32803285 None:intergenic 45.0%
TGGGTGGCAATTGCTTTGAT+AGG + chr3_2:32803382-32803401 None:intergenic 45.0%
TGTCTGAGGATGATGAGACT+TGG + chr3_2:32803691-32803710 None:intergenic 45.0%
GATGGTTCCTCCAAAAGTTC+AGG + chr3_2:32803767-32803786 None:intergenic 45.0%
TGCCGTTCAAAAAGGCCTAG+CGG + chr3_2:32802661-32802680 None:intergenic 50.0%
GATTAGGCGTCTCTCAGTGT+CGG + chr3_2:32802893-32802912 None:intergenic 50.0%
ATGCAGCCATAGGTAGTAGG+TGG - chr3_2:32803141-32803160 Msa0403240:intron 50.0%
TGCCGTTCAAAAAGGCCTAG+CGG + chr3_2:32802661-32802680 None:intergenic 50.0%
GATTAGGCGTCTCTCAGTGT+CGG + chr3_2:32802893-32802912 None:intergenic 50.0%
ATGCAGCCATAGGTAGTAGG+TGG - chr3_2:32803141-32803160 Msa0403240:intron 50.0%
! CGCCGCTAGGCCTTTTTGAA+CGG - chr3_2:32802656-32802675 Msa0403240:CDS 55.0%
CACCAGACACGACACAGATG+TGG - chr3_2:32802821-32802840 Msa0403240:CDS 55.0%
GTCCACATCTGTGTCGTGTC+TGG + chr3_2:32802826-32802845 None:intergenic 55.0%
! CGCCGCTAGGCCTTTTTGAA+CGG - chr3_2:32802656-32802675 Msa0403240:CDS 55.0%
CACCAGACACGACACAGATG+TGG - chr3_2:32802821-32802840 Msa0403240:CDS 55.0%
GTCCACATCTGTGTCGTGTC+TGG + chr3_2:32802826-32802845 None:intergenic 55.0%
CGGACAACAAGCTCGCCGCT+AGG - chr3_2:32802643-32802662 Msa0403240:CDS 65.0%
CGGACAACAAGCTCGCCGCT+AGG - chr3_2:32802643-32802662 Msa0403240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 32802227 32803796 32802227 ID=Msa0403240;Name=Msa0403240
chr3_2 mRNA 32802227 32803796 32802227 ID=Msa0403240-mRNA-1;Parent=Msa0403240;Name=Msa0403240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|0.5|2|0|301
chr3_2 exon 32803658 32803796 32803658 ID=Msa0403240-mRNA-1:exon:6509;Parent=Msa0403240-mRNA-1
chr3_2 exon 32802227 32802993 32802227 ID=Msa0403240-mRNA-1:exon:6508;Parent=Msa0403240-mRNA-1
chr3_2 CDS 32803658 32803796 32803658 ID=Msa0403240-mRNA-1:cds;Parent=Msa0403240-mRNA-1
chr3_2 CDS 32802227 32802993 32802227 ID=Msa0403240-mRNA-1:cds;Parent=Msa0403240-mRNA-1
Gene Sequence

>Msa0403240

ATGGTGAGGTCTTCAAGTTGTGAAAAAAATAGTGTCATCAAAAGAGGTGTATGGATTGCAGAAGAAGATGCAAAGACACCTTCATTTGCCTCAGAGCATCATGGATCTGTTAATTTGACTTCTGTCCCTAAAAAAACAGGTGTTAAGAGGTATGGAAAAAGTTGCAGGCTTAGGTGGAGTAACTCCATGTCTGATCCTAAGCATGATGATAAGTTCACATCCCAAGAAGAAGATCTAATCGTTAAGCTTCATGCAGCCATAGGTAGTAGGTGGTCTATCATAGCTCAACAACTTCCTGGGAGAACAGACAATGATGTTAAGAACAATTGGAACACAAAGCTGAAAAAGAAGCTTTCTCAAATGGGGATAGACCCTGTTACTCACAAGCCTTTCTCTAAACTCATTGCTGATTATGGAAATATAGGTGGTGCTAATTGTCATATTAATCAAGACTTTAGGAATCAAAGATTGATCAGAAACACAAATGACCTATCAAAGCAATTGCCACCCAAAATGGAAACAGTTATGAATCTTTCACAGTTCCAAACCATCCCAATGACAAAAGTAGAAAATGAAACCAGTAATAATAATAATAATCCAACATCAATGTTTATGGAAGCATTCTTGTCATCATCATCATCACCATTACCTTCAACACAAGAAACAAACTTTTCTGCACCATTTAGTTGGAATGACTTTCTTCTACAAGATGCTTTTTCACAAGATGCACCTACTAATAACCTGCAAGAACAACAAATTTTAGGTGGATTGTTATCAAAGAAAGAGGTCATGTCACACCAAGTCTCATCATCCTCAGACATTTCATTCGTAGAGACCATACTCGATCAAGAAAATGAGATGTTTCTAAGCTTTCCTGAACTTTTGGAGGAACCATCCCATTACTAA
Protein sequence

>Msa0403240

MVRSSSCEKNSVIKRGVWIAEEDAKTPSFASEHHGSVNLTSVPKKTGVKRYGKSCRLRWSNSMSDPKHDDKFTSQEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGANCHINQDFRNQRLIRNTNDLSKQLPPKMETVMNLSQFQTIPMTKVENETSNNNNNPTSMFMEAFLSSSSSPLPSTQETNFSAPFSWNDFLLQDAFSQDAPTNNLQEQQILGGLLSKKEVMSHQVSSSSDISFVETILDQENEMFLSFPELLEEPSHY*