Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404680 | XP_039685680.1 | 84.750 | 800 | 74 | 4 | 1 | 752 | 1 | 800 | 0.0 | 1375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404680 | sp|Q9SWG3|FAR1_ARATH | 25.648 | 733 | 428 | 22 | 51 | 745 | 66 | 719 | 4.38e-48 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404680 | D3YBB9 | 76.612 | 791 | 139 | 5 | 18 | 770 | 65 | 847 | 0.0 | 1233 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0404680 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404680 | MtrunA17_Chr3g0088371 | 81.152 | 191 | 33 | 1 | 590 | 777 | 1 | 191 | 5.52e-103 | 315 |
| Msa0404680 | MtrunA17_Chr2g0324011 | 28.299 | 629 | 350 | 13 | 37 | 633 | 8 | 567 | 2.55e-81 | 271 |
| Msa0404680 | MtrunA17_Chr1g0202341 | 28.687 | 617 | 364 | 17 | 35 | 633 | 50 | 608 | 5.77e-68 | 238 |
| Msa0404680 | MtrunA17_Chr8g0363841 | 27.564 | 624 | 352 | 17 | 41 | 633 | 22 | 576 | 1.28e-65 | 231 |
| Msa0404680 | MtrunA17_Chr3g0082121 | 29.668 | 482 | 279 | 9 | 42 | 494 | 49 | 499 | 1.97e-63 | 225 |
| Msa0404680 | MtrunA17_Chr3g0082121 | 32.609 | 138 | 78 | 5 | 566 | 699 | 529 | 655 | 3.02e-11 | 67.0 |
| Msa0404680 | MtrunA17_Chr1g0203721 | 24.674 | 766 | 438 | 19 | 7 | 715 | 22 | 705 | 1.06e-62 | 226 |
| Msa0404680 | MtrunA17_Chr1g0172971 | 87.179 | 117 | 15 | 0 | 1 | 117 | 1 | 117 | 3.14e-61 | 216 |
| Msa0404680 | MtrunA17_Chr2g0296781 | 25.943 | 663 | 408 | 18 | 40 | 680 | 1 | 602 | 6.82e-58 | 210 |
| Msa0404680 | MtrunA17_Chr5g0448761 | 24.033 | 724 | 446 | 16 | 25 | 713 | 47 | 701 | 1.62e-57 | 210 |
| Msa0404680 | MtrunA17_Chr1g0164591 | 32.154 | 311 | 196 | 4 | 132 | 440 | 1 | 298 | 1.16e-53 | 189 |
| Msa0404680 | MtrunA17_Chr6g0458391 | 24.801 | 629 | 341 | 15 | 42 | 633 | 231 | 764 | 3.66e-53 | 197 |
| Msa0404680 | MtrunA17_Chr2g0287651 | 26.898 | 606 | 378 | 16 | 40 | 633 | 79 | 631 | 3.27e-52 | 196 |
| Msa0404680 | MtrunA17_Chr6g0477261 | 26.255 | 518 | 333 | 12 | 181 | 681 | 7 | 492 | 1.35e-51 | 191 |
| Msa0404680 | MtrunA17_Chr7g0258861 | 34.641 | 306 | 176 | 6 | 37 | 337 | 8 | 294 | 7.08e-51 | 180 |
| Msa0404680 | MtrunA17_Chr5g0440451 | 23.497 | 732 | 428 | 19 | 8 | 695 | 21 | 664 | 9.24e-48 | 182 |
| Msa0404680 | MtrunA17_Chr1g0207551 | 25.419 | 657 | 427 | 17 | 42 | 690 | 40 | 641 | 8.50e-47 | 179 |
| Msa0404680 | MtrunA17_Chr2g0329031 | 24.823 | 705 | 414 | 24 | 18 | 695 | 3 | 618 | 2.38e-46 | 177 |
| Msa0404680 | MtrunA17_Chr5g0441581 | 25.599 | 668 | 399 | 23 | 21 | 661 | 13 | 609 | 7.77e-46 | 175 |
| Msa0404680 | MtrunA17_Chr3g0118611 | 26.559 | 497 | 288 | 10 | 222 | 691 | 111 | 557 | 1.24e-45 | 175 |
| Msa0404680 | MtrunA17_Chr1g0203051 | 23.599 | 589 | 354 | 13 | 51 | 609 | 94 | 616 | 1.07e-43 | 167 |
| Msa0404680 | MtrunA17_Chr3g0080351 | 24.079 | 706 | 440 | 19 | 33 | 720 | 73 | 700 | 1.10e-42 | 167 |
| Msa0404680 | MtrunA17_Chr6g0475591 | 94.521 | 73 | 4 | 0 | 189 | 261 | 1 | 73 | 7.44e-42 | 147 |
| Msa0404680 | MtrunA17_Chr2g0287061 | 24.194 | 620 | 334 | 17 | 42 | 633 | 189 | 700 | 2.66e-40 | 159 |
| Msa0404680 | MtrunA17_Chr1g0198761 | 24.567 | 635 | 368 | 17 | 37 | 632 | 48 | 610 | 2.33e-39 | 156 |
| Msa0404680 | MtrunA17_Chr2g0290391 | 24.765 | 638 | 356 | 21 | 39 | 632 | 54 | 611 | 4.70e-36 | 145 |
| Msa0404680 | MtrunA17_Chr1g0196541 | 26.316 | 399 | 263 | 10 | 40 | 436 | 1 | 370 | 1.21e-34 | 141 |
| Msa0404680 | MtrunA17_Chr2g0291591 | 27.518 | 407 | 235 | 13 | 22 | 410 | 51 | 415 | 1.77e-34 | 139 |
| Msa0404680 | MtrunA17_Chr5g0431001 | 27.073 | 410 | 268 | 10 | 14 | 411 | 39 | 429 | 6.78e-34 | 136 |
| Msa0404680 | MtrunA17_Chr2g0291581 | 23.974 | 609 | 385 | 14 | 39 | 632 | 74 | 619 | 4.73e-33 | 136 |
| Msa0404680 | MtrunA17_Chr2g0276841 | 27.318 | 399 | 252 | 13 | 50 | 437 | 84 | 455 | 5.22e-31 | 130 |
| Msa0404680 | MtrunA17_Chr5g0448511 | 31.081 | 222 | 146 | 3 | 217 | 436 | 1 | 217 | 1.55e-30 | 127 |
| Msa0404680 | MtrunA17_Chr2g0294841 | 27.561 | 410 | 256 | 13 | 42 | 437 | 51 | 433 | 7.07e-28 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404680 | AT4G15090.1 | 25.648 | 733 | 428 | 22 | 51 | 745 | 66 | 719 | 4.46e-49 | 186 |
| Msa0404680 | AT4G15090.5 | 25.648 | 733 | 428 | 22 | 51 | 745 | 66 | 719 | 4.46e-49 | 186 |
| Msa0404680 | AT4G15090.3 | 25.648 | 733 | 428 | 22 | 51 | 745 | 66 | 719 | 4.46e-49 | 186 |
| Msa0404680 | AT4G15090.2 | 25.648 | 733 | 428 | 22 | 51 | 745 | 66 | 719 | 4.46e-49 | 186 |
| Msa0404680 | AT4G15090.4 | 25.648 | 733 | 428 | 22 | 51 | 745 | 66 | 719 | 4.46e-49 | 186 |
| Msa0404680 | AT4G38180.1 | 28.431 | 408 | 269 | 7 | 35 | 440 | 72 | 458 | 1.90e-48 | 184 |
| Msa0404680 | AT3G06250.2 | 24.525 | 632 | 335 | 18 | 31 | 633 | 185 | 703 | 2.10e-44 | 172 |
| Msa0404680 | AT3G06250.1 | 24.525 | 632 | 335 | 18 | 31 | 633 | 185 | 703 | 2.10e-44 | 172 |
| Msa0404680 | AT3G06250.3 | 24.525 | 632 | 335 | 18 | 31 | 633 | 185 | 703 | 2.10e-44 | 172 |
| Msa0404680 | AT2G27110.3 | 24.296 | 568 | 345 | 13 | 214 | 751 | 36 | 548 | 9.58e-43 | 166 |
| Msa0404680 | AT2G27110.2 | 24.296 | 568 | 345 | 13 | 214 | 751 | 181 | 693 | 1.10e-42 | 167 |
| Msa0404680 | AT2G27110.1 | 24.296 | 568 | 345 | 13 | 214 | 751 | 181 | 693 | 1.10e-42 | 167 |
| Msa0404680 | AT1G76320.3 | 22.696 | 727 | 427 | 19 | 42 | 725 | 3 | 637 | 6.05e-40 | 157 |
| Msa0404680 | AT1G76320.1 | 22.771 | 729 | 428 | 20 | 40 | 725 | 1 | 637 | 1.47e-39 | 157 |
| Msa0404680 | AT1G76320.4 | 22.771 | 729 | 428 | 20 | 40 | 725 | 1 | 637 | 1.47e-39 | 157 |
| Msa0404680 | AT1G76320.2 | 22.771 | 729 | 428 | 20 | 40 | 725 | 1 | 637 | 1.52e-39 | 157 |
| Msa0404680 | AT3G22170.2 | 24.484 | 678 | 397 | 22 | 33 | 680 | 67 | 659 | 2.00e-38 | 154 |
| Msa0404680 | AT3G22170.1 | 24.484 | 678 | 397 | 22 | 33 | 680 | 67 | 659 | 2.00e-38 | 154 |
| Msa0404680 | AT4G19990.1 | 26.226 | 469 | 271 | 14 | 220 | 661 | 106 | 526 | 9.46e-36 | 145 |
| Msa0404680 | AT4G19990.3 | 26.226 | 469 | 271 | 14 | 220 | 661 | 163 | 583 | 1.41e-35 | 144 |
| Msa0404680 | AT4G19990.4 | 26.226 | 469 | 271 | 14 | 220 | 661 | 163 | 583 | 1.41e-35 | 144 |
| Msa0404680 | AT5G28530.1 | 25.522 | 623 | 370 | 24 | 41 | 632 | 60 | 619 | 1.66e-35 | 144 |
| Msa0404680 | AT4G19990.6 | 26.226 | 469 | 271 | 14 | 220 | 661 | 163 | 583 | 1.80e-35 | 144 |
| Msa0404680 | AT4G19990.2 | 26.226 | 469 | 271 | 14 | 220 | 661 | 163 | 583 | 1.80e-35 | 144 |
| Msa0404680 | AT4G19990.7 | 26.013 | 469 | 272 | 13 | 220 | 661 | 177 | 597 | 1.84e-35 | 144 |
| Msa0404680 | AT4G19990.5 | 26.013 | 469 | 272 | 13 | 220 | 661 | 163 | 583 | 1.94e-35 | 144 |
| Msa0404680 | AT5G28530.3 | 25.896 | 614 | 375 | 22 | 41 | 632 | 60 | 615 | 3.54e-35 | 143 |
| Msa0404680 | AT5G28530.2 | 25.896 | 614 | 375 | 22 | 41 | 632 | 60 | 615 | 3.54e-35 | 143 |
| Msa0404680 | AT2G32250.5 | 23.197 | 707 | 412 | 23 | 42 | 727 | 44 | 640 | 4.82e-34 | 140 |
| Msa0404680 | AT2G32250.7 | 23.782 | 698 | 419 | 23 | 42 | 727 | 3 | 599 | 6.44e-34 | 139 |
| Msa0404680 | AT2G32250.8 | 23.782 | 698 | 419 | 23 | 42 | 727 | 3 | 599 | 8.05e-34 | 139 |
| Msa0404680 | AT2G32250.2 | 23.197 | 707 | 412 | 23 | 42 | 727 | 44 | 640 | 8.80e-34 | 139 |
| Msa0404680 | AT2G32250.4 | 23.197 | 707 | 412 | 23 | 42 | 727 | 44 | 640 | 8.80e-34 | 139 |
| Msa0404680 | AT4G38170.1 | 24.341 | 493 | 275 | 19 | 236 | 691 | 24 | 455 | 9.91e-34 | 137 |
| Msa0404680 | AT2G32250.6 | 23.197 | 707 | 412 | 23 | 42 | 727 | 44 | 640 | 1.19e-33 | 139 |
| Msa0404680 | AT2G32250.1 | 23.197 | 707 | 412 | 23 | 42 | 727 | 44 | 640 | 1.19e-33 | 139 |
| Msa0404680 | AT2G32250.3 | 23.197 | 707 | 412 | 23 | 42 | 727 | 44 | 640 | 1.19e-33 | 139 |
| Msa0404680 | AT5G18960.2 | 25.472 | 424 | 246 | 12 | 22 | 440 | 197 | 555 | 1.58e-31 | 132 |
| Msa0404680 | AT5G18960.1 | 25.472 | 424 | 246 | 12 | 22 | 440 | 197 | 555 | 1.58e-31 | 132 |
| Msa0404680 | AT1G80010.1 | 27.202 | 386 | 235 | 12 | 42 | 412 | 101 | 455 | 1.04e-29 | 126 |
| Msa0404680 | AT1G52520.1 | 23.654 | 613 | 379 | 20 | 42 | 632 | 91 | 636 | 1.54e-27 | 119 |
| Msa0404680 | AT1G10240.2 | 25.935 | 401 | 255 | 14 | 50 | 437 | 62 | 433 | 4.10e-27 | 118 |
| Msa0404680 | AT1G10240.1 | 25.935 | 401 | 255 | 14 | 50 | 437 | 62 | 433 | 4.10e-27 | 118 |
Find 114 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3_2:-37133341 | Msa0404680:CDS |
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 3_2:+37132521 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 3_2:-37133931 | Msa0404680:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3_2:-37133383 | Msa0404680:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 3_2:+37133804 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 3_2:+37132527 | None:intergenic |
| TTCCATGATTCTTTATTGTT+AGG | 0.270360 | 3_2:+37135189 | None:intergenic |
| GCTATTGGTGAAACATCTTC+TGG | 0.290527 | 3_2:-37132584 | Msa0404680:CDS |
| TTGAAGATCTTGAAGTTCTT+AGG | 0.295702 | 3_2:-37132923 | Msa0404680:CDS |
| GCCTTCCAATGTTGATGTTT+TGG | 0.297192 | 3_2:-37133092 | Msa0404680:CDS |
| TCTGATGTTGGCCTGTTGTT+AGG | 0.302249 | 3_2:+37134979 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 3_2:+37134788 | None:intergenic |
| GGCAGAAATTCCTTATCATT+TGG | 0.323606 | 3_2:-37132469 | Msa0404680:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 3_2:-37134472 | Msa0404680:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 3_2:+37133527 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.355437 | 3_2:+37133918 | None:intergenic |
| TCCATGATTCTTTATTGTTA+GGG | 0.363624 | 3_2:+37135190 | None:intergenic |
| GAGAGATGATGAAGCTTTAT+CGG | 0.365492 | 3_2:-37132435 | Msa0404680:CDS |
| GCCGATATTTATTGTTTGTC+CGG | 0.373278 | 3_2:+37134422 | None:intergenic |
| TTTGTTTCTTCCAAATGATA+AGG | 0.381259 | 3_2:+37132459 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 3_2:-37132683 | Msa0404680:CDS |
| TTTCAATTTATGATATCTAA+TGG | 0.387940 | 3_2:-37135337 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 3_2:-37134415 | Msa0404680:intron |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3_2:-37134713 | Msa0404680:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3_2:+37132545 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3_2:-37133209 | Msa0404680:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 3_2:-37133558 | Msa0404680:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 3_2:-37132967 | Msa0404680:CDS |
| CTATTGGTGAAACATCTTCT+GGG | 0.426700 | 3_2:-37132583 | Msa0404680:CDS |
| ACCGGACAAACAATAAATAT+CGG | 0.427277 | 3_2:-37134423 | Msa0404680:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 3_2:+37133745 | None:intergenic |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 3_2:-37134700 | Msa0404680:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3_2:-37134775 | Msa0404680:CDS |
| GATCATGATCTTCAAACCTT+GGG | 0.430100 | 3_2:+37133044 | None:intergenic |
| CGATCATGATCTTCAAACCT+TGG | 0.434642 | 3_2:+37133043 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 3_2:-37132650 | Msa0404680:CDS |
| TCTTCAAAAGTAGCTGCTAT+TGG | 0.439493 | 3_2:-37132599 | Msa0404680:CDS |
| TATGATGATGCTGATAATAA+CGG | 0.439710 | 3_2:-37133115 | Msa0404680:CDS |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 3_2:+37132553 | None:intergenic |
| AGAGATGATGAAGCTTTATC+GGG | 0.447874 | 3_2:-37132434 | Msa0404680:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 3_2:-37135027 | Msa0404680:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 3_2:-37133509 | Msa0404680:intron |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 3_2:-37134858 | Msa0404680:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 3_2:-37133243 | Msa0404680:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 3_2:-37134745 | Msa0404680:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 3_2:+37133289 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3_2:-37134712 | Msa0404680:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 3_2:-37134990 | Msa0404680:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 3_2:+37132866 | None:intergenic |
| TTATAACCAACCCTTTCCTC+AGG | 0.472195 | 3_2:+37134916 | None:intergenic |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 3_2:-37133030 | Msa0404680:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 3_2:-37133510 | Msa0404680:CDS |
| ATGATGATGCTGATAATAAC+GGG | 0.480831 | 3_2:-37133114 | Msa0404680:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3_2:+37134661 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3_2:+37133207 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 3_2:-37132638 | Msa0404680:CDS |
| CTGAAATCGACTGTCAATAG+TGG | 0.489453 | 3_2:-37132809 | Msa0404680:CDS |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 3_2:-37132884 | Msa0404680:CDS |
| CCCCTAACAATAAAGAATCA+TGG | 0.490467 | 3_2:-37135191 | Msa0404680:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3_2:-37133193 | Msa0404680:CDS |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 3_2:+37132615 | None:intergenic |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3_2:-37133369 | Msa0404680:CDS |
| GAATGCTCTGGTTTGTGTAA+TGG | 0.500658 | 3_2:+37134817 | None:intergenic |
| TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 3_2:+37133247 | None:intergenic |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 3_2:+37132554 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3_2:-37133350 | Msa0404680:CDS |
| AGCTAGAATATATTTGAAGC+TGG | 0.509863 | 3_2:-37134893 | Msa0404680:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 3_2:-37135061 | Msa0404680:CDS |
| CTAAGGTAACGTGAATGCTC+TGG | 0.514487 | 3_2:+37134805 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3_2:+37133401 | None:intergenic |
| GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 3_2:+37133248 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 3_2:-37135123 | Msa0404680:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 3_2:-37135016 | Msa0404680:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 3_2:-37134851 | Msa0404680:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3_2:+37133212 | None:intergenic |
| TTCACAAACTCAATAACAAG+TGG | 0.529891 | 3_2:+37134952 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 3_2:-37133719 | Msa0404680:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3_2:+37133406 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3_2:-37133192 | Msa0404680:CDS |
| TGCATCCAAAACATCAACAT+TGG | 0.544202 | 3_2:+37133087 | None:intergenic |
| CCATGATTCTTTATTGTTAG+GGG | 0.545134 | 3_2:+37135191 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3_2:-37135015 | Msa0404680:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 3_2:+37133773 | None:intergenic |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 3_2:-37132966 | Msa0404680:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 3_2:-37133555 | Msa0404680:CDS |
| TGAAGCTTTATCGGGGATTG+TGG | 0.569043 | 3_2:-37132426 | Msa0404680:CDS |
| TCCAAAACATCAACATTGGA+AGG | 0.569301 | 3_2:+37133091 | None:intergenic |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 3_2:+37133288 | None:intergenic |
| AAGATCTTGAAGTTCTTAGG+TGG | 0.573695 | 3_2:-37132920 | Msa0404680:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 3_2:+37132614 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3_2:-37134697 | Msa0404680:CDS |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 3_2:-37134706 | Msa0404680:CDS |
| TTCAAGAAAACGTTTCCCCA+AGG | 0.588789 | 3_2:-37133060 | Msa0404680:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 3_2:-37133291 | Msa0404680:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 3_2:-37133522 | Msa0404680:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 3_2:-37134857 | Msa0404680:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 3_2:+37132775 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3_2:-37133206 | Msa0404680:CDS |
| ATCATGATCTTCAAACCTTG+GGG | 0.630883 | 3_2:+37133045 | None:intergenic |
| ACAAGTGGACTGTCTGATGT+TGG | 0.631014 | 3_2:+37134967 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 3_2:-37134692 | Msa0404680:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3_2:-37133368 | Msa0404680:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.645542 | 3_2:-37135270 | Msa0404680:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 3_2:+37133793 | None:intergenic |
| GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 3_2:+37132824 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 3_2:+37133549 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 3_2:-37132965 | Msa0404680:CDS |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 3_2:+37132550 | None:intergenic |
| AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 3_2:+37133249 | None:intergenic |
| TATTGGTGAAACATCTTCTG+GGG | 0.678807 | 3_2:-37132582 | Msa0404680:CDS |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 3_2:+37133553 | None:intergenic |
| GAGATGATGAAGCTTTATCG+GGG | 0.689274 | 3_2:-37132433 | Msa0404680:CDS |
| AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 3_2:+37133267 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 3_2:-37133791 | Msa0404680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATATCATAGTAAAAATA+TGG | + | chr3_2:37133182-37133201 | None:intergenic | 15.0% |
| !!! | TTTTGATGAGTTAAATAATT+TGG | - | chr3_2:37134076-37134095 | Msa0404680:intron | 15.0% |
| !!! | AATCAAATTTTGACTATAAT+TGG | - | chr3_2:37134117-37134136 | Msa0404680:intron | 15.0% |
| !!! | ATCAAATTTTGACTATAATT+GGG | - | chr3_2:37134118-37134137 | Msa0404680:intron | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr3_2:37132582-37132601 | Msa0404680:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr3_2:37132868-37132887 | Msa0404680:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr3_2:37132869-37132888 | Msa0404680:CDS | 20.0% |
| !!! | ATTTATATTTTGAACTTCCT+AGG | - | chr3_2:37133550-37133569 | Msa0404680:CDS | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr3_2:37133602-37133621 | Msa0404680:CDS | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | - | chr3_2:37133665-37133684 | Msa0404680:CDS | 20.0% |
| !!! | TGTTTTATTTTGTTCTGATA+TGG | - | chr3_2:37133766-37133785 | Msa0404680:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | - | chr3_2:37134146-37134165 | Msa0404680:intron | 20.0% |
| ! | TCCATGATTCTTTATTGTTA+GGG | + | chr3_2:37132539-37132558 | None:intergenic | 25.0% |
| ! | TTCCATGATTCTTTATTGTT+AGG | + | chr3_2:37132540-37132559 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | - | chr3_2:37132616-37132635 | Msa0404680:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | - | chr3_2:37132665-37132684 | Msa0404680:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr3_2:37133216-37133235 | Msa0404680:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr3_2:37133254-37133273 | Msa0404680:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | + | chr3_2:37133329-37133348 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+TGG | - | chr3_2:37133448-37133467 | Msa0404680:intron | 25.0% |
| ! | CTTACTTATTTGAACTACAT+GGG | - | chr3_2:37133449-37133468 | Msa0404680:intron | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr3_2:37133526-37133545 | Msa0404680:CDS | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr3_2:37133811-37133830 | None:intergenic | 25.0% |
| ! | GAGAATGAAAAGAAAAATCT+TGG | - | chr3_2:37134032-37134051 | Msa0404680:intron | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | - | chr3_2:37134150-37134169 | Msa0404680:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr3_2:37134343-37134362 | Msa0404680:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr3_2:37134517-37134536 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr3_2:37134517-37134536 | Msa0404680:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | + | chr3_2:37134564-37134583 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | - | chr3_2:37134577-37134596 | Msa0404680:CDS | 25.0% |
| !! | TATGATGATGCTGATAATAA+CGG | - | chr3_2:37134611-37134630 | Msa0404680:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | + | chr3_2:37135025-37135044 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | - | chr3_2:37135028-37135047 | Msa0404680:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | + | chr3_2:37135202-37135221 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | - | chr3_2:37135236-37135255 | Msa0404680:CDS | 25.0% |
| !! | TTTGTTTCTTCCAAATGATA+AGG | + | chr3_2:37135270-37135289 | None:intergenic | 25.0% |
| !!! | GTGTTTGTTGCTATTTTCAA+TGG | - | chr3_2:37132428-37132447 | Msa0404680:CDS | 30.0% |
| CCATGATTCTTTATTGTTAG+GGG | + | chr3_2:37132538-37132557 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | - | chr3_2:37132603-37132622 | Msa0404680:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr3_2:37132699-37132718 | Msa0404680:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr3_2:37132710-37132729 | Msa0404680:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr3_2:37132711-37132730 | Msa0404680:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | - | chr3_2:37132736-37132755 | Msa0404680:CDS | 30.0% | |
| TTCACAAACTCAATAACAAG+TGG | + | chr3_2:37132777-37132796 | None:intergenic | 30.0% | |
| ! | AGCTAGAATATATTTGAAGC+TGG | - | chr3_2:37132833-37132852 | Msa0404680:CDS | 30.0% |
| TAAGATATATAGATGGGATG+TGG | - | chr3_2:37132875-37132894 | Msa0404680:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr3_2:37132941-37132960 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr3_2:37132981-37133000 | Msa0404680:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr3_2:37133014-37133033 | Msa0404680:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr3_2:37133068-37133087 | None:intergenic | 30.0% | |
| GTAAAAATATGGTTTCGAGA+GGG | + | chr3_2:37133171-37133190 | None:intergenic | 30.0% | |
| AGTAAAAATATGGTTTCGAG+AGG | + | chr3_2:37133172-37133191 | None:intergenic | 30.0% | |
| !! | TCAGTTTTGATACAACTTAC+CGG | - | chr3_2:37133285-37133304 | Msa0404680:CDS | 30.0% |
| ACCGGACAAACAATAAATAT+CGG | - | chr3_2:37133303-37133322 | Msa0404680:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr3_2:37133311-37133330 | Msa0404680:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | - | chr3_2:37133335-37133354 | Msa0404680:CDS | 30.0% |
| ! | CTGCTACTTATAATACACAT+GGG | + | chr3_2:37133396-37133415 | None:intergenic | 30.0% |
| ! | ACTGCTACTTATAATACACA+TGG | + | chr3_2:37133397-37133416 | None:intergenic | 30.0% |
| TAAGAACTATAGTCAATCCT+AGG | + | chr3_2:37133433-37133452 | None:intergenic | 30.0% | |
| ! | TTTAACCATGCTGTTTGTTT+AGG | - | chr3_2:37133472-37133491 | Msa0404680:intron | 30.0% |
| ! | TTAACCATGCTGTTTGTTTA+GGG | - | chr3_2:37133473-37133492 | Msa0404680:intron | 30.0% |
| TAAGTTTGTCTCAAACCAAA+TGG | + | chr3_2:37133514-37133533 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr3_2:37133795-37133814 | Msa0404680:CDS | 30.0% | |
| !! | AGACAGAAACTACTTTTGAT+TGG | - | chr3_2:37133871-37133890 | Msa0404680:CDS | 30.0% |
| AAAACACCTGGAAAACTATT+CGG | + | chr3_2:37133984-37134003 | None:intergenic | 30.0% | |
| ! | TCTTTCAATGTTTTTCTTCG+TGG | - | chr3_2:37134287-37134306 | Msa0404680:intron | 30.0% |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr3_2:37134328-37134347 | None:intergenic | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | + | chr3_2:37134480-37134499 | None:intergenic | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | + | chr3_2:37134481-37134500 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | + | chr3_2:37134482-37134501 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr3_2:37134522-37134541 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr3_2:37134520-37134539 | Msa0404680:CDS | 30.0% | |
| ! | GTTTTCACAATTGATAAGGT+TGG | - | chr3_2:37134581-37134600 | Msa0404680:CDS | 30.0% |
| ! | ATGATGATGCTGATAATAAC+GGG | - | chr3_2:37134612-37134631 | Msa0404680:CDS | 30.0% |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr3_2:37134696-37134715 | Msa0404680:CDS | 30.0% |
| TTGAAGATCTTGAAGTTCTT+AGG | - | chr3_2:37134803-37134822 | Msa0404680:CDS | 30.0% | |
| !!! | GACAATATGTTTTAAAGCGT+TGG | - | chr3_2:37134864-37134883 | Msa0404680:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr3_2:37135184-37135203 | None:intergenic | 30.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr3_2:37132456-37132475 | Msa0404680:CDS | 35.0% | |
| CCCCTAACAATAAAGAATCA+TGG | - | chr3_2:37132535-37132554 | Msa0404680:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr3_2:37132794-37132813 | Msa0404680:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr3_2:37132799-37132818 | Msa0404680:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr3_2:37132800-37132819 | Msa0404680:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr3_2:37132951-37132970 | Msa0404680:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr3_2:37133013-37133032 | Msa0404680:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | - | chr3_2:37133020-37133039 | Msa0404680:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr3_2:37133100-37133119 | Msa0404680:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr3_2:37133103-37133122 | Msa0404680:CDS | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr3_2:37133224-37133243 | Msa0404680:CDS | 35.0% |
| GCCGATATTTATTGTTTGTC+CGG | + | chr3_2:37133307-37133326 | None:intergenic | 35.0% | |
| AAATCCCTAAACAAACAGCA+TGG | + | chr3_2:37133480-37133499 | None:intergenic | 35.0% | |
| ! | ATTTAGTTTACGCATTGCTG+AGG | - | chr3_2:37133636-37133655 | Msa0404680:CDS | 35.0% |
| AGGCTAGCAATGACTAATTA+AGG | - | chr3_2:37133685-37133704 | Msa0404680:CDS | 35.0% | |
| GGCTAGCAATGACTAATTAA+GGG | - | chr3_2:37133686-37133705 | Msa0404680:CDS | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | - | chr3_2:37133690-37133709 | Msa0404680:CDS | 35.0% | |
| TGACTAATTAAGGGTTGGAT+TGG | - | chr3_2:37133695-37133714 | Msa0404680:CDS | 35.0% | |
| !!! | CATTGCAAGAGTGTTTTGTT+TGG | - | chr3_2:37133828-37133847 | Msa0404680:CDS | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr3_2:37133925-37133944 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr3_2:37133975-37133994 | Msa0404680:intron | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr3_2:37133987-37134006 | Msa0404680:intron | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr3_2:37133988-37134007 | Msa0404680:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr3_2:37134000-37134019 | Msa0404680:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr3_2:37134357-37134376 | Msa0404680:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr3_2:37134358-37134377 | Msa0404680:intron | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr3_2:37134483-37134502 | Msa0404680:CDS | 35.0% | |
| TCCAAAACATCAACATTGGA+AGG | + | chr3_2:37134638-37134657 | None:intergenic | 35.0% | |
| TGCATCCAAAACATCAACAT+TGG | + | chr3_2:37134642-37134661 | None:intergenic | 35.0% | |
| ATCATGATCTTCAAACCTTG+GGG | + | chr3_2:37134684-37134703 | None:intergenic | 35.0% | |
| GATCATGATCTTCAAACCTT+GGG | + | chr3_2:37134685-37134704 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr3_2:37134760-37134779 | Msa0404680:CDS | 35.0% | |
| AAGATCTTGAAGTTCTTAGG+TGG | - | chr3_2:37134806-37134825 | Msa0404680:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | - | chr3_2:37134842-37134861 | Msa0404680:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | + | chr3_2:37134863-37134882 | None:intergenic | 35.0% |
| TGTTCTTGAAGCTGGAAAAA+AGG | - | chr3_2:37135051-37135070 | Msa0404680:CDS | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | - | chr3_2:37135088-37135107 | Msa0404680:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | + | chr3_2:37135121-37135140 | None:intergenic | 35.0% |
| TCTTCAAAAGTAGCTGCTAT+TGG | - | chr3_2:37135127-37135146 | Msa0404680:CDS | 35.0% | |
| CTATTGGTGAAACATCTTCT+GGG | - | chr3_2:37135143-37135162 | Msa0404680:CDS | 35.0% | |
| TATTGGTGAAACATCTTCTG+GGG | - | chr3_2:37135144-37135163 | Msa0404680:CDS | 35.0% | |
| TCTTTCTTTGAACTTTGGTG+CGG | + | chr3_2:37135179-37135198 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr3_2:37135208-37135227 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCATT+TGG | - | chr3_2:37135257-37135276 | Msa0404680:CDS | 35.0% | |
| ! | GAGAGATGATGAAGCTTTAT+CGG | - | chr3_2:37135291-37135310 | Msa0404680:exon | 35.0% |
| ! | AGAGATGATGAAGCTTTATC+GGG | - | chr3_2:37135292-37135311 | Msa0404680:exon | 35.0% |
| TTATAACCAACCCTTTCCTC+AGG | + | chr3_2:37132813-37132832 | None:intergenic | 40.0% | |
| ! | GAATGCTCTGGTTTGTGTAA+TGG | + | chr3_2:37132912-37132931 | None:intergenic | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | - | chr3_2:37133413-37133432 | Msa0404680:intron | 40.0% |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | - | chr3_2:37133496-37133515 | Msa0404680:intron | 40.0% |
| TCACACAAGACAAAATGCCT+AGG | + | chr3_2:37133570-37133589 | None:intergenic | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr3_2:37133936-37133955 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | - | chr3_2:37133935-37133954 | Msa0404680:intron | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | + | chr3_2:37134202-37134221 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | - | chr3_2:37134204-37134223 | Msa0404680:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr3_2:37134217-37134236 | Msa0404680:intron | 40.0% |
| GTCAAGTCATAGTTTACAGC+TGG | - | chr3_2:37134239-37134258 | Msa0404680:intron | 40.0% | |
| AATCGAACAAGTGAATGGTC+TGG | + | chr3_2:37134323-37134342 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr3_2:37134385-37134404 | Msa0404680:intron | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | + | chr3_2:37134462-37134481 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr3_2:37134533-37134552 | Msa0404680:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr3_2:37134534-37134553 | Msa0404680:CDS | 40.0% | |
| ! | GCCTTCCAATGTTGATGTTT+TGG | - | chr3_2:37134634-37134653 | Msa0404680:CDS | 40.0% |
| TTCAAGAAAACGTTTCCCCA+AGG | - | chr3_2:37134666-37134685 | Msa0404680:CDS | 40.0% | |
| CGATCATGATCTTCAAACCT+TGG | + | chr3_2:37134686-37134705 | None:intergenic | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr3_2:37134759-37134778 | Msa0404680:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr3_2:37134761-37134780 | Msa0404680:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr3_2:37134905-37134924 | None:intergenic | 40.0% | |
| CTGAAATCGACTGTCAATAG+TGG | - | chr3_2:37134917-37134936 | Msa0404680:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr3_2:37134954-37134973 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | - | chr3_2:37135076-37135095 | Msa0404680:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | + | chr3_2:37135115-37135134 | None:intergenic | 40.0% | |
| GCTATTGGTGAAACATCTTC+TGG | - | chr3_2:37135142-37135161 | Msa0404680:CDS | 40.0% | |
| ! | GAGATGATGAAGCTTTATCG+GGG | - | chr3_2:37135293-37135312 | Msa0404680:exon | 40.0% |
| ! | TCTGATGTTGGCCTGTTGTT+AGG | + | chr3_2:37132750-37132769 | None:intergenic | 45.0% |
| !! | ACAAGTGGACTGTCTGATGT+TGG | + | chr3_2:37132762-37132781 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr3_2:37132804-37132823 | Msa0404680:CDS | 45.0% | |
| CTAAGGTAACGTGAATGCTC+TGG | + | chr3_2:37132924-37132943 | None:intergenic | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | - | chr3_2:37133026-37133045 | Msa0404680:CDS | 45.0% | |
| ! | GCACGGAGAATCTTCCTTTT+CGG | - | chr3_2:37133051-37133070 | Msa0404680:CDS | 45.0% |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr3_2:37133107-37133126 | Msa0404680:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | + | chr3_2:37133956-37133975 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr3_2:37133996-37134015 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr3_2:37134216-37134235 | Msa0404680:intron | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr3_2:37134376-37134395 | Msa0404680:intron | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | - | chr3_2:37135057-37135076 | Msa0404680:CDS | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | + | chr3_2:37135114-37135133 | None:intergenic | 45.0% | |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | + | chr3_2:37135175-37135194 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | + | chr3_2:37135176-37135195 | None:intergenic | 45.0% |
| ! | TGAAGCTTTATCGGGGATTG+TGG | - | chr3_2:37135300-37135319 | Msa0404680:exon | 45.0% |
| GTTATGGGTCAAGGAGTTGG+AGG | - | chr3_2:37133029-37133048 | Msa0404680:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr3_2:37134007-37134026 | Msa0404680:intron | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | - | chr3_2:37134168-37134187 | Msa0404680:intron | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | + | chr3_2:37134176-37134195 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | + | chr3_2:37134180-37134199 | None:intergenic | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | - | chr3_2:37134435-37134454 | Msa0404680:CDS | 50.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | - | chr3_2:37134171-37134190 | Msa0404680:intron | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | + | chr3_2:37134440-37134459 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | - | chr3_2:37135043-37135062 | Msa0404680:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr3_2:37133034-37133053 | Msa0404680:CDS | 60.0% | |
| GGACCGCATCAGCTGACTGT+TGG | + | chr3_2:37134441-37134460 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 37132403 | 37135345 | 37132403 | ID=Msa0404680;Name=Msa0404680 |
| chr3_2 | mRNA | 37132403 | 37135345 | 37132403 | ID=Msa0404680-mRNA-1;Parent=Msa0404680;Name=Msa0404680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=44|0.5|0.33|1|1|1|3|0|781 |
| chr3_2 | exon | 37132403 | 37133428 | 37132403 | ID=Msa0404680-mRNA-1:exon:7411;Parent=Msa0404680-mRNA-1 |
| chr3_2 | exon | 37133510 | 37133943 | 37133510 | ID=Msa0404680-mRNA-1:exon:7410;Parent=Msa0404680-mRNA-1 |
| chr3_2 | exon | 37134416 | 37135345 | 37134416 | ID=Msa0404680-mRNA-1:exon:7409;Parent=Msa0404680-mRNA-1 |
| chr3_2 | five_prime_UTR | 37135302 | 37135345 | 37135302 | ID=Msa0404680-mRNA-1:five_prime_utr;Parent=Msa0404680-mRNA-1 |
| chr3_2 | CDS | 37134416 | 37135301 | 37134416 | ID=Msa0404680-mRNA-1:cds;Parent=Msa0404680-mRNA-1 |
| chr3_2 | CDS | 37133510 | 37133943 | 37133510 | ID=Msa0404680-mRNA-1:cds;Parent=Msa0404680-mRNA-1 |
| chr3_2 | CDS | 37132403 | 37133428 | 37132403 | ID=Msa0404680-mRNA-1:cds;Parent=Msa0404680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
