AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0406190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0406190 MtrunA17_Chr3g0097101 99.180 244 1 1 1 243 1 244 6.14e-180 493
Msa0406190 MtrunA17_Chr8g0380021 62.041 245 90 2 1 243 1 244 8.42e-105 303
Msa0406190 MtrunA17_Chr2g0284911 59.023 266 80 5 1 243 1 260 1.42e-102 298
Msa0406190 MtrunA17_Chr3g0077501 59.565 230 83 3 15 242 1 222 1.60e-92 271
Msa0406190 MtrunA17_Chr8g0351051 50.877 171 84 0 15 185 1 171 3.69e-53 172
Msa0406190 MtrunA17_Chr8g0351031 44.340 212 110 3 15 220 1 210 1.24e-52 170
Msa0406190 MtrunA17_Chr5g0420091 47.701 174 90 1 15 187 1 174 5.92e-47 155
Msa0406190 MtrunA17_Chr7g0246431 40.670 209 124 0 15 223 1 209 1.06e-46 154
Msa0406190 MtrunA17_Chr7g0220111 42.793 222 116 5 15 228 1 219 6.16e-46 153
Msa0406190 MtrunA17_Chr8g0351041 53.793 145 62 2 15 156 1 143 1.08e-45 150
Msa0406190 MtrunA17_Chr2g0279821 49.359 156 77 2 15 169 1 155 2.73e-45 151
Msa0406190 MtrunA17_Chr8g0366231 47.312 186 91 2 15 196 1 183 4.10e-45 151
Msa0406190 MtrunA17_Chr4g0061691 44.048 168 93 1 15 181 1 168 5.38e-45 150
Msa0406190 MtrunA17_Chr6g0455511 41.071 224 118 5 15 228 1 220 4.84e-44 149
Msa0406190 MtrunA17_Chr3g0122251 43.519 216 110 6 15 222 1 212 1.96e-43 147
Msa0406190 MtrunA17_Chr4g0057151 41.361 191 110 1 15 203 1 191 2.79e-43 145
Msa0406190 MtrunA17_Chr5g0420081 40.952 210 108 4 15 211 1 207 2.86e-43 146
Msa0406190 MtrunA17_Chr5g0411691 45.087 173 89 2 15 185 1 169 6.91e-43 145
Msa0406190 MtrunA17_Chr4g0061671 45.349 172 91 2 15 185 1 170 1.84e-42 142
Msa0406190 MtrunA17_Chr4g0049541 46.980 149 77 2 15 163 1 147 2.60e-41 140
Msa0406190 MtrunA17_Chr4g0018421 39.698 199 110 5 15 210 1 192 7.05e-40 136
Msa0406190 MtrunA17_Chr7g0220121 43.575 179 95 4 15 191 1 175 1.26e-38 135
Msa0406190 MtrunA17_Chr1g0204111 40.230 174 103 1 15 187 17 190 5.87e-37 130
Msa0406190 MtrunA17_Chr6g0474371 41.618 173 99 2 15 185 1 173 1.65e-36 127
Msa0406190 MtrunA17_Chr4g0020221 42.632 190 103 3 15 200 1 188 2.57e-36 129
Msa0406190 MtrunA17_Chr5g0412461 42.857 175 94 2 15 186 1 172 7.74e-36 127
Msa0406190 MtrunA17_Chr5g0412271 41.899 179 90 2 15 186 1 172 5.38e-35 124
Msa0406190 MtrunA17_Chr5g0427401 40.116 172 101 1 15 186 1 170 1.09e-34 124
Msa0406190 MtrunA17_Chr3g0125241 44.218 147 75 2 15 159 26 167 3.95e-34 122
Msa0406190 MtrunA17_Chr4g0049901 38.043 184 110 2 15 195 27 209 2.96e-33 120
Msa0406190 MtrunA17_Chr1g0164791 38.824 170 97 3 15 178 1 169 2.07e-32 118
Msa0406190 MtrunA17_Chr1g0159661 42.177 147 78 2 15 159 1 142 1.58e-31 114
Msa0406190 MtrunA17_Chr3g0142191 38.857 175 91 4 15 182 1 166 1.76e-31 115
Msa0406190 MtrunA17_Chr5g0404951 38.265 196 103 5 15 202 1 186 7.83e-30 111
Msa0406190 MtrunA17_Chr7g0246381 73.770 61 16 0 15 75 1 61 6.58e-29 104
Msa0406190 MtrunA17_Chr8g0377561 79.310 58 12 0 15 72 1 58 2.92e-28 103
Msa0406190 MtrunA17_Chr2g0308251 63.768 69 25 0 15 83 1 69 4.11e-27 100
Msa0406190 MtrunA17_Chr1g0173161 74.576 59 15 0 15 73 1 59 5.33e-26 97.1
Msa0406190 MtrunA17_Chr5g0427921 65.000 60 21 0 15 74 1 60 1.12e-24 92.8
Msa0406190 MtrunA17_Chr5g0425191 69.492 59 18 0 15 73 1 59 4.17e-23 90.1
Msa0406190 MtrunA17_Chr3g0134451 62.857 70 25 1 15 83 1 70 4.50e-23 95.5
Msa0406190 MtrunA17_Chr4g0044071 67.241 58 19 0 15 72 1 58 2.64e-22 88.6
Msa0406190 MtrunA17_Chr2g0292791 44.340 106 49 1 10 105 3 108 1.85e-20 86.7
Msa0406190 MtrunA17_Chr3g0099411 37.662 154 72 4 10 145 3 150 1.31e-19 84.0
Msa0406190 MtrunA17_Chr3g0099421 52.703 74 35 0 10 83 28 101 2.27e-19 84.3
Msa0406190 MtrunA17_Chr2g0325971 50.000 74 37 0 10 83 3 76 2.34e-19 83.6
Msa0406190 MtrunA17_Chr2g0333981 36.667 120 64 3 12 121 8 125 2.69e-19 82.4
Msa0406190 MtrunA17_Chr1g0208561 45.238 84 46 0 10 93 3 86 3.25e-19 83.2
Msa0406190 MtrunA17_Chr3g0089141 45.238 84 46 0 10 93 3 86 3.76e-19 83.2
Msa0406190 MtrunA17_Chr1g0206721 42.453 106 51 1 10 105 3 108 3.98e-19 83.2
Msa0406190 MtrunA17_Chr1g0208581 50.000 74 37 0 10 83 3 76 1.30e-18 81.6
Msa0406190 MtrunA17_Chr5g0419601 39.450 109 60 2 10 118 3 105 1.56e-18 81.6
Msa0406190 MtrunA17_Chr1g0206991 41.509 106 52 1 10 105 3 108 1.94e-18 80.1
Msa0406190 MtrunA17_Chr1g0206701 46.429 84 45 0 10 93 3 86 2.01e-18 81.3
Msa0406190 MtrunA17_Chr8g0376821 53.623 69 32 0 15 83 1 69 2.02e-18 80.1
Msa0406190 MtrunA17_Chr8g0355091 41.509 106 52 1 10 105 3 108 2.55e-18 80.9
Msa0406190 MtrunA17_Chr1g0169761 42.268 97 56 0 15 111 1 97 2.55e-18 79.7
Msa0406190 MtrunA17_Chr8g0379021 37.097 124 62 4 12 123 8 127 4.70e-18 79.0
Msa0406190 MtrunA17_Chr1g0188671 37.391 115 71 1 10 123 41 155 5.80e-18 80.9
Msa0406190 MtrunA17_Chr1g0187361 48.649 74 38 0 10 83 3 76 5.83e-18 80.1
Msa0406190 MtrunA17_Chr1g0166611 43.617 94 44 1 27 120 17 101 7.69e-18 77.4
Msa0406190 MtrunA17_Chr1g0175601 41.509 106 59 1 15 117 1 106 2.25e-17 77.4
Msa0406190 MtrunA17_Chr1g0149391 47.297 74 39 0 10 83 3 76 3.23e-17 78.2
Msa0406190 MtrunA17_Chr4g0074101 49.275 69 35 0 15 83 1 69 4.85e-17 76.6
Msa0406190 MtrunA17_Chr1g0175611 50.704 71 35 0 15 85 1 71 5.67e-17 75.9
Msa0406190 MtrunA17_Chr2g0317481 45.946 74 40 0 10 83 3 76 7.37e-17 77.0
Msa0406190 MtrunA17_Chr2g0317451 45.946 74 40 0 10 83 3 76 7.52e-17 77.0
Msa0406190 MtrunA17_Chr8g0357771 49.275 69 35 0 15 83 1 69 1.93e-16 74.7
Msa0406190 MtrunA17_Chr5g0422421 45.946 74 40 0 10 83 3 76 2.65e-16 75.5
Msa0406190 MtrunA17_Chr4g0018951 36.090 133 80 2 12 139 8 140 2.79e-16 73.9
Msa0406190 MtrunA17_Chr5g0422941 45.946 74 40 0 10 83 3 76 3.11e-16 75.5
Msa0406190 MtrunA17_Chr1g0180591 49.275 69 35 0 15 83 1 69 3.58e-16 73.9
Msa0406190 MtrunA17_Chr4g0052081 33.333 138 86 2 15 146 1 138 7.05e-16 73.2
Msa0406190 MtrunA17_Chr5g0417661 54.386 57 26 0 11 67 52 108 8.18e-16 71.6
Msa0406190 MtrunA17_Chr3g0119901 46.377 69 37 0 15 83 8 76 1.57e-15 72.8
Msa0406190 MtrunA17_Chr3g0085241 43.243 74 42 0 10 83 35 108 2.61e-15 73.2
Msa0406190 MtrunA17_Chr4g0052061 28.481 158 106 1 15 165 1 158 2.78e-15 71.2
Msa0406190 MtrunA17_Chr8g0356071 46.377 69 37 0 15 83 1 69 3.53e-15 70.9
Msa0406190 MtrunA17_Chr2g0300441 43.750 80 43 1 16 93 7 86 5.22e-15 72.0
Msa0406190 MtrunA17_Chr2g0300421 45.946 74 40 0 10 83 3 76 5.61e-15 70.5
Msa0406190 MtrunA17_Chr3g0089151 45.946 74 40 0 10 83 3 76 5.97e-15 69.3
Msa0406190 MtrunA17_Chr4g0060841 54.717 53 24 0 15 67 1 53 1.33e-14 72.4
Msa0406190 MtrunA17_Chr2g0308271 32.540 126 83 1 74 197 32 157 5.25e-13 65.9
Msa0406190 MtrunA17_Chr1g0206691 43.478 69 39 0 25 93 1 69 9.09e-13 65.5
Msa0406190 MtrunA17_Chr5g0427961 40.000 90 52 2 74 163 4 91 9.57e-12 61.6
Msa0406190 MtrunA17_Chr4g0071601 35.246 122 67 3 12 123 8 127 9.86e-12 62.0
Msa0406190 MtrunA17_Chr1g0187351 45.763 59 32 0 25 83 1 59 1.85e-11 58.5
Msa0406190 MtrunA17_Chr3g0111841 44.068 59 33 0 22 80 2 60 3.53e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0406190 AT3G58780.1 71.369 241 63 3 8 243 9 248 2.55e-119 340
Msa0406190 AT3G58780.5 71.369 241 63 3 8 243 15 254 4.17e-119 340
Msa0406190 AT2G42830.1 71.610 236 63 2 11 243 12 246 2.19e-118 338
Msa0406190 AT2G42830.2 71.008 238 63 3 11 243 12 248 1.44e-116 333
Msa0406190 AT3G58780.3 64.662 266 63 4 8 243 9 273 2.48e-113 326
Msa0406190 AT3G58780.4 62.774 274 63 4 8 243 9 281 3.94e-112 323
Msa0406190 AT3G58780.2 68.880 241 62 4 8 243 9 241 5.63e-112 322
Msa0406190 AT4G18960.1 62.857 245 82 4 7 243 9 252 4.04e-104 302
Msa0406190 AT4G09960.6 63.551 214 72 2 15 227 2 210 3.42e-94 276
Msa0406190 AT4G09960.1 63.551 214 72 2 15 227 1 209 3.73e-94 276
Msa0406190 AT4G09960.5 63.551 214 72 2 15 227 11 219 7.50e-94 275
Msa0406190 AT4G09960.3 63.256 215 73 2 14 227 26 235 1.49e-93 275
Msa0406190 AT4G09960.4 62.100 219 73 3 14 227 95 308 9.02e-91 271
Msa0406190 AT4G09960.2 60.280 214 65 3 15 227 1 195 7.56e-85 252
Msa0406190 AT4G18960.3 53.757 173 71 4 79 243 67 238 4.02e-53 172
Msa0406190 AT4G18960.2 53.757 173 71 4 79 243 67 238 4.02e-53 172
Msa0406190 AT2G45650.1 44.286 210 107 3 15 222 1 202 1.06e-51 169
Msa0406190 AT5G60910.1 45.355 183 99 1 15 196 1 183 1.47e-49 163
Msa0406190 AT2G45660.1 44.000 175 98 0 15 189 1 175 1.67e-47 157
Msa0406190 AT3G57230.1 47.742 155 80 1 15 169 1 154 2.55e-47 157
Msa0406190 AT3G57230.4 47.742 155 80 1 15 169 1 154 2.55e-47 157
Msa0406190 AT4G22950.2 47.368 171 89 1 15 185 1 170 9.68e-47 153
Msa0406190 AT3G57230.2 51.408 142 68 1 15 156 1 141 3.01e-46 151
Msa0406190 AT4G22950.3 47.647 170 88 1 15 184 1 169 5.39e-46 153
Msa0406190 AT4G22950.1 47.647 170 88 1 15 184 1 169 5.39e-46 153
Msa0406190 AT3G61120.1 41.981 212 121 1 15 226 1 210 1.87e-45 152
Msa0406190 AT1G26310.1 39.918 243 120 7 15 240 1 234 2.20e-45 152
Msa0406190 AT1G24260.1 45.641 195 100 3 15 206 1 192 4.30e-45 151
Msa0406190 AT1G69120.2 45.506 178 94 3 15 190 1 177 6.00e-45 150
Msa0406190 AT2G45660.2 46.358 151 81 0 15 165 1 151 8.56e-45 148
Msa0406190 AT1G24260.2 45.408 196 100 4 15 206 1 193 1.14e-44 150
Msa0406190 AT1G69120.1 45.506 178 94 3 15 190 1 177 4.03e-44 149
Msa0406190 AT5G62165.3 44.706 170 94 0 15 184 1 170 1.96e-43 146
Msa0406190 AT5G62165.1 44.706 170 94 0 15 184 1 170 1.96e-43 146
Msa0406190 AT5G62165.2 44.706 170 94 0 15 184 1 170 1.96e-43 146
Msa0406190 AT5G62165.10 47.170 159 83 1 15 172 1 159 3.56e-43 145
Msa0406190 AT5G62165.4 47.170 159 83 1 15 172 1 159 3.56e-43 145
Msa0406190 AT5G62165.17 49.296 142 72 0 15 156 1 142 4.52e-43 143
Msa0406190 AT5G62165.12 49.296 142 72 0 15 156 1 142 4.52e-43 143
Msa0406190 AT5G62165.11 49.296 142 72 0 15 156 1 142 4.52e-43 143
Msa0406190 AT5G62165.6 49.296 142 72 0 15 156 1 142 7.10e-43 143
Msa0406190 AT5G62165.9 49.296 142 72 0 15 156 1 142 7.10e-43 143
Msa0406190 AT5G62165.7 49.296 142 72 0 15 156 1 142 7.10e-43 143
Msa0406190 AT5G62165.8 49.296 142 72 0 15 156 1 142 7.10e-43 143
Msa0406190 AT5G62165.13 49.296 142 72 0 15 156 1 142 7.10e-43 143
Msa0406190 AT2G03710.3 44.253 174 94 2 15 186 1 173 1.22e-42 143
Msa0406190 AT2G03710.2 42.857 182 101 2 15 194 1 181 4.19e-42 144
Msa0406190 AT2G03710.1 42.857 182 101 2 15 194 1 181 4.74e-42 144
Msa0406190 AT5G15800.1 45.977 174 93 1 15 187 1 174 1.04e-41 143
Msa0406190 AT1G24260.3 48.750 160 78 3 15 170 1 160 1.26e-41 142
Msa0406190 AT5G15800.2 45.977 174 93 1 15 187 1 174 1.69e-41 142
Msa0406190 AT3G02310.1 45.977 174 93 1 15 187 1 174 2.07e-41 142
Msa0406190 AT4G18960.4 53.719 121 56 0 68 188 56 176 6.50e-41 139
Msa0406190 AT3G02310.2 46.784 171 90 1 15 184 1 171 6.79e-41 139
Msa0406190 AT4G37940.1 43.396 159 88 2 15 172 1 158 2.27e-40 139
Msa0406190 AT4G11880.2 45.860 157 83 2 15 170 1 156 5.50e-40 136
Msa0406190 AT4G11880.3 45.860 157 83 2 15 170 1 156 5.50e-40 136
Msa0406190 AT4G11880.4 48.299 147 74 2 15 160 1 146 9.22e-40 137
Msa0406190 AT4G11880.1 48.299 147 74 2 15 160 1 146 9.22e-40 137
Msa0406190 AT5G51860.2 43.678 174 97 1 15 187 1 174 6.97e-39 134
Msa0406190 AT4G37940.3 43.836 146 81 1 15 160 1 145 8.90e-39 133
Msa0406190 AT4G37940.4 45.070 142 77 1 15 156 1 141 1.30e-38 134
Msa0406190 AT2G22630.1 43.114 167 89 4 15 179 1 163 1.08e-37 132
Msa0406190 AT2G22630.2 43.114 167 89 4 15 179 1 163 1.08e-37 132
Msa0406190 AT5G51860.1 44.785 163 89 1 15 176 1 163 1.38e-37 131
Msa0406190 AT5G51870.4 42.347 196 105 5 15 207 1 191 2.11e-37 131
Msa0406190 AT5G51870.1 45.455 176 93 3 15 188 1 175 2.58e-37 130
Msa0406190 AT5G51870.3 42.132 197 106 5 15 208 11 202 3.06e-37 130
Msa0406190 AT5G51870.2 48.980 147 74 1 15 160 1 147 1.06e-36 127
Msa0406190 AT4G24540.1 42.222 180 100 2 15 192 1 178 1.28e-36 129
Msa0406190 AT5G51870.5 48.000 150 77 1 12 160 21 170 1.92e-36 127
Msa0406190 AT3G30260.1 44.231 156 76 3 15 164 1 151 4.47e-36 128
Msa0406190 AT5G13790.1 43.429 175 88 2 15 187 1 166 5.92e-36 128
Msa0406190 AT5G13790.2 43.182 176 90 2 15 187 1 169 9.23e-36 128
Msa0406190 AT2G22540.3 40.351 171 96 2 15 182 1 168 1.84e-35 126
Msa0406190 AT2G22540.1 40.351 171 96 2 15 182 1 168 1.84e-35 126
Msa0406190 AT2G14210.1 41.808 177 92 4 15 182 1 175 1.52e-34 124
Msa0406190 AT2G14210.2 41.808 177 92 4 15 182 1 175 2.08e-34 124
Msa0406190 AT1G71692.1 39.560 182 102 2 15 188 1 182 1.74e-32 118
Msa0406190 AT5G20240.1 42.000 150 80 2 15 162 1 145 1.87e-32 117
Msa0406190 AT5G62165.14 58.511 94 35 1 15 108 1 90 4.16e-32 114
Msa0406190 AT5G23260.4 39.196 199 108 4 6 196 4 197 8.85e-32 117
Msa0406190 AT2G22540.2 39.181 171 93 3 15 182 1 163 2.00e-31 115
Msa0406190 AT5G20240.2 42.958 142 74 2 15 154 1 137 3.71e-31 112
Msa0406190 AT5G23260.2 39.785 186 103 3 15 196 1 181 7.18e-31 115
Msa0406190 AT3G54340.1 40.994 161 82 4 15 170 1 153 1.75e-30 113
Msa0406190 AT3G57390.3 35.196 179 107 2 15 185 1 178 1.07e-29 111
Msa0406190 AT5G23260.1 38.693 199 104 5 6 196 4 192 1.55e-29 111
Msa0406190 AT3G57390.1 35.196 179 107 2 15 185 1 178 2.01e-29 111
Msa0406190 AT5G23260.3 39.247 186 90 4 15 196 1 167 9.99e-28 106
Msa0406190 AT5G65070.1 36.310 168 98 2 15 181 1 160 1.28e-25 100
Msa0406190 AT5G65050.2 35.632 174 101 3 15 186 1 165 1.42e-25 99.4
Msa0406190 AT5G10140.4 37.580 157 89 2 15 170 1 149 1.52e-25 99.4
Msa0406190 AT5G10140.1 38.816 152 84 2 15 165 1 144 3.04e-25 99.0
Msa0406190 AT5G65050.3 35.632 174 101 3 15 186 1 165 4.50e-25 98.6
Msa0406190 AT5G10140.2 38.816 152 84 2 15 165 1 144 4.95e-25 97.4
Msa0406190 AT5G65050.5 35.260 173 92 3 15 186 1 154 5.97e-25 97.8
Msa0406190 AT5G10140.3 38.816 152 84 2 15 165 1 144 7.48e-25 97.4
Msa0406190 AT5G65070.2 36.126 191 98 5 15 181 1 191 2.50e-24 97.4
Msa0406190 AT5G65080.3 39.623 159 83 5 15 170 8 156 4.62e-24 95.5
Msa0406190 AT5G65060.1 33.908 174 104 3 15 186 1 165 7.92e-24 95.1
Msa0406190 AT5G65060.3 33.908 174 104 3 15 186 1 165 8.42e-24 95.1
Msa0406190 AT5G65050.1 36.943 157 88 3 15 169 1 148 1.39e-23 94.0
Msa0406190 AT1G31140.1 39.073 151 83 3 15 160 1 147 2.72e-23 94.4
Msa0406190 AT5G65070.4 37.162 148 84 2 15 161 1 140 5.22e-23 91.7
Msa0406190 AT5G65070.5 36.111 180 91 5 15 170 1 180 6.28e-23 93.2
Msa0406190 AT5G65060.2 33.526 173 95 3 15 186 1 154 6.32e-23 92.4
Msa0406190 AT1G31140.2 38.710 155 80 4 15 160 1 149 9.29e-23 92.8
Msa0406190 AT1G77980.1 61.429 70 26 1 15 83 1 70 2.16e-22 94.0
Msa0406190 AT1G22130.1 75.926 54 13 0 15 68 1 54 2.64e-22 94.0
Msa0406190 AT5G65080.2 38.065 155 86 3 15 168 8 153 7.95e-22 90.1
Msa0406190 AT5G65070.3 62.712 59 22 0 15 73 1 59 2.59e-21 89.4
Msa0406190 AT1G77080.5 37.356 174 100 3 15 187 1 166 2.57e-20 85.1
Msa0406190 AT1G77080.11 36.994 173 100 3 15 186 1 165 8.70e-20 84.0
Msa0406190 AT1G77080.4 36.571 175 102 3 15 188 1 167 1.30e-19 84.0
Msa0406190 AT1G77950.3 52.857 70 32 1 15 83 1 70 1.62e-18 82.4
Msa0406190 AT1G77950.2 52.857 70 32 1 15 83 1 70 1.62e-18 82.4
Msa0406190 AT1G77950.1 52.857 70 32 1 15 83 1 70 1.62e-18 82.4
Msa0406190 AT1G77950.4 52.857 70 32 1 15 83 1 70 1.62e-18 82.4
Msa0406190 AT1G77080.2 35.028 177 98 3 15 188 1 163 2.57e-18 80.5
Msa0406190 AT1G77080.8 31.604 212 114 5 15 200 1 207 7.15e-18 80.1
Msa0406190 AT4G36590.1 41.880 117 60 3 16 132 7 115 1.72e-17 79.3
Msa0406190 AT1G65360.1 33.333 105 69 1 12 116 3 106 2.68e-17 78.6
Msa0406190 AT1G77080.12 36.478 159 84 3 15 170 1 145 9.37e-17 75.1
Msa0406190 AT1G18750.4 62.264 53 20 0 15 67 1 53 1.31e-16 78.6
Msa0406190 AT1G18750.1 62.264 53 20 0 15 67 1 53 1.61e-16 78.2
Msa0406190 AT1G18750.3 62.264 53 20 0 15 67 1 53 1.81e-16 78.2
Msa0406190 AT5G60440.1 37.069 116 59 2 12 125 3 106 1.88e-16 77.4
Msa0406190 AT1G01530.1 46.479 71 38 0 11 81 2 72 1.99e-16 76.6
Msa0406190 AT4G37435.1 57.895 57 24 0 15 71 1 57 2.65e-16 74.7
Msa0406190 AT2G34440.1 35.088 114 68 1 15 128 1 108 2.66e-16 74.7
Msa0406190 AT2G03060.3 30.476 210 109 8 15 205 1 192 5.91e-16 76.6
Msa0406190 AT2G03060.7 30.476 210 109 8 15 205 1 192 5.91e-16 76.6
Msa0406190 AT2G03060.1 30.476 210 109 8 15 205 1 192 5.91e-16 76.6
Msa0406190 AT2G03060.2 30.476 210 109 8 15 205 1 192 6.23e-16 76.6
Msa0406190 AT3G66656.1 47.143 70 37 0 15 84 1 70 7.45e-16 73.6
Msa0406190 AT1G72350.1 54.412 68 29 1 16 83 43 108 1.23e-15 73.9
Msa0406190 AT5G60910.2 33.333 117 78 0 80 196 5 121 6.28e-15 70.9
Msa0406190 AT2G24840.1 44.928 69 38 0 15 83 62 130 7.20e-15 72.4
Msa0406190 AT1G47760.1 44.737 76 42 0 15 90 1 76 2.31e-14 69.7
Msa0406190 AT3G04100.1 38.961 77 47 0 8 84 6 82 2.69e-14 69.7
Msa0406190 AT1G69540.1 30.539 167 87 5 15 181 1 138 6.19e-14 70.5
Msa0406190 AT1G69540.2 30.723 166 86 5 15 180 1 137 1.03e-13 70.1
Msa0406190 AT1G29962.1 43.836 73 41 0 11 83 3 75 2.05e-13 67.0
Msa0406190 AT1G28460.1 43.243 74 42 0 10 83 2 75 2.06e-13 67.0
Msa0406190 AT3G57230.5 33.962 106 65 2 68 169 16 120 2.39e-12 64.3
Msa0406190 AT3G57230.3 33.962 106 65 2 68 169 16 120 2.39e-12 64.3
Msa0406190 AT1G28450.1 39.189 74 45 0 10 83 2 75 1.05e-11 62.4

Find 47 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACAGCTTTACAAAATA+TGG 0.161630 3_2:-42415003 Msa0406190:intron
TCGAATCTGTCTTCTCAATT+TGG 0.238823 3_2:+42411289 None:intergenic
TTCTTTCCGGTAAATCTTCT+TGG 0.243928 3_2:-42409349 Msa0406190:CDS
AGGATCTTCTCAAAAGAAAA+TGG 0.268060 3_2:-42414961 Msa0406190:CDS
GATTTACCGGAAAGAAATTT+CGG 0.349244 3_2:+42409356 None:intergenic
AGATACAGATTCTGCGTTAG+TGG 0.372608 3_2:+42411567 None:intergenic
TAGCTCGTAGATAATTGTTA+TGG 0.380639 3_2:+42409605 None:intergenic
ATATGACCGAAATTTCTTTC+CGG 0.382195 3_2:-42409362 Msa0406190:CDS
CGGTCATATGCTTGCGATGA+AGG 0.388780 3_2:+42409376 None:intergenic
TCAATTTGGATGATTCTTGC+TGG 0.395773 3_2:+42411303 None:intergenic
TCTGATCCAAGAAGATTTAC+CGG 0.399583 3_2:+42409343 None:intergenic
ACTAGCTATATGTAGTTGTT+TGG 0.409086 3_2:+42415361 None:intergenic
GAGACATTCAGAATCTAAAT+AGG 0.426568 3_2:-42411268 Msa0406190:intron
GAAGATCCTTCACCTTCATT+TGG 0.434409 3_2:+42414975 None:intergenic
ACACAAGTTGGAGCGCAGTT+TGG 0.446128 3_2:+42409296 None:intergenic
TGATCACACATTGTTTGATC+TGG 0.450279 3_2:+42409406 None:intergenic
CTTGAGGGTAGATTAGAGAA+AGG 0.459778 3_2:-42411107 Msa0406190:CDS
TCCATTGCGTCGTTTGCAAA+AGG 0.462665 3_2:+42414884 None:intergenic
ACAAAGAACAGATAATTCAT+AGG 0.465996 3_2:+42414848 None:intergenic
GCAAAAGGTGACTTGCCTAT+TGG 0.470050 3_2:+42414899 None:intergenic
TGTATGAATATGCCAACAAC+AGG 0.477767 3_2:-42414782 Msa0406190:intron
AAGCAGAGTTAGATCTAGAA+AGG 0.478447 3_2:-42411081 Msa0406190:intron
GGATCTTCTCAAAAGAAAAT+GGG 0.486264 3_2:-42414960 Msa0406190:CDS
AAAGAACTAAAGAATCTTGA+GGG 0.492203 3_2:-42411122 Msa0406190:CDS
GGATTGAAAACACTACCAAT+AGG 0.493244 3_2:-42414914 Msa0406190:CDS
ATAGCTAGTGCAAATTCATA+AGG 0.498144 3_2:-42415347 Msa0406190:intron
TGTAAACTCAAACCTGTTGT+TGG 0.501282 3_2:+42414770 None:intergenic
TGAGACGTTGTTTGCTGATG+TGG 0.507873 3_2:-42410439 Msa0406190:CDS
CACATCCTTGGTGAAGCTCT+CGG 0.516737 3_2:-42411158 Msa0406190:CDS
ATATGCTTGCGATGAAGGTA+AGG 0.526041 3_2:+42409381 None:intergenic
ATATGAATGCTTACACAAGT+TGG 0.536621 3_2:+42409284 None:intergenic
TCTCAAAAGAAAATGGGAAG+AGG 0.543069 3_2:-42414954 Msa0406190:CDS
GAGGGAAAATTGAAATCAAG+AGG 0.543111 3_2:-42414935 Msa0406190:CDS
CTTGTTGTCTTCTCCACTCG+TGG 0.551625 3_2:-42414810 Msa0406190:CDS
AATATGGAGCTACCAAATGA+AGG 0.557752 3_2:-42414987 Msa0406190:CDS
CTCAAAAGAAAATGGGAAGA+GGG 0.561170 3_2:-42414953 Msa0406190:CDS
TTCATACAAGCGACCACGAG+TGG 0.567368 3_2:+42414797 None:intergenic
TAACAATTATCTACGAGCTA+AGG 0.568340 3_2:-42409602 Msa0406190:intron
CAAAGAACTAAAGAATCTTG+AGG 0.572771 3_2:-42411123 Msa0406190:CDS
TGTATCTGAAGCTAATACCC+AGG 0.584785 3_2:-42411551 Msa0406190:intron
TGTGGAGTTCATGCAAAAGC+GGG 0.598411 3_2:-42410421 Msa0406190:intron
CACGAGTGGAGAAGACAACA+AGG 0.599730 3_2:+42414811 None:intergenic
GAGCTACCAAATGAAGGTGA+AGG 0.600711 3_2:-42414981 Msa0406190:CDS
ATGTGGAGTTCATGCAAAAG+CGG 0.623084 3_2:-42410422 Msa0406190:CDS
GTGTTAGAGCAACAATTGAA+AGG 0.623957 3_2:-42411612 Msa0406190:CDS
GAGATCCGAGAGCTTCACCA+AGG 0.699882 3_2:+42411153 None:intergenic
ACGAGTGGAGAAGACAACAA+GGG 0.733610 3_2:+42414812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAAATTATAATATT+TGG - chr3_2:42413992-42414011 Msa0406190:intron 0.0%
!! TTTACACTAAAATTATTTAA+GGG + chr3_2:42410768-42410787 None:intergenic 10.0%
!!! TTTTACACTAAAATTATTTA+AGG + chr3_2:42410769-42410788 None:intergenic 10.0%
!!! TTTTATAAAAAATAATTGTC+AGG - chr3_2:42411658-42411677 Msa0406190:intron 10.0%
!! ATAATTAACTTATTCATATA+AGG + chr3_2:42411969-42411988 None:intergenic 10.0%
!! AATTAAAACCATATAATATA+TGG - chr3_2:42413248-42413267 Msa0406190:intron 10.0%
!!! ATAATTTTAAAGTAACAAAA+AGG + chr3_2:42413298-42413317 None:intergenic 10.0%
!! TTGATTAATTATTCAATTAA+TGG + chr3_2:42413469-42413488 None:intergenic 10.0%
!!! TTTTCATGTTTTTTTTTTTT+TGG + chr3_2:42414132-42414151 None:intergenic 10.0%
!! ATTAAAACTATATTCATATA+GGG + chr3_2:42414555-42414574 None:intergenic 10.0%
!! AATTAAAACTATATTCATAT+AGG + chr3_2:42414556-42414575 None:intergenic 10.0%
!! AATGATTGAATAAGTAAATT+AGG - chr3_2:42409612-42409631 Msa0406190:CDS 15.0%
!! ATGATTGAATAAGTAAATTA+GGG - chr3_2:42409613-42409632 Msa0406190:CDS 15.0%
!! GTATTTCAAACTTTATATAT+TGG - chr3_2:42410043-42410062 Msa0406190:intron 15.0%
!! TGATAAATAAAAAAACTTTG+TGG - chr3_2:42410100-42410119 Msa0406190:intron 15.0%
!! GATAAATAAAAAAACTTTGT+GGG - chr3_2:42410101-42410120 Msa0406190:intron 15.0%
!!! TTGTTAATTTTTTACTCTTT+TGG - chr3_2:42410186-42410205 Msa0406190:intron 15.0%
!! ACTATAATATAGTTCAAATT+TGG - chr3_2:42411006-42411025 Msa0406190:intron 15.0%
!!! TGGAAACTTATTTAAATTTT+TGG - chr3_2:42411525-42411544 Msa0406190:intron 15.0%
!!! TTTTTTTTTTCTTTTCCAAT+TGG + chr3_2:42412667-42412686 None:intergenic 15.0%
!!! TAAATAGTTTTTTGTTTGTT+TGG + chr3_2:42412835-42412854 None:intergenic 15.0%
!!! TTATCTTCAAAATTGTTTTT+AGG + chr3_2:42412921-42412940 None:intergenic 15.0%
!!! TTATGACTTGATTTATTTTA+GGG + chr3_2:42413886-42413905 None:intergenic 15.0%
!!! TTTATGACTTGATTTATTTT+AGG + chr3_2:42413887-42413906 None:intergenic 15.0%
!! AAAAGAAATAAAATCTAACA+AGG + chr3_2:42414180-42414199 None:intergenic 15.0%
!!! TTGTTAGATTTTATTTCTTT+TGG - chr3_2:42414179-42414198 Msa0406190:intron 15.0%
!! ATACTTCAATAAGAAATATT+TGG - chr3_2:42414396-42414415 Msa0406190:intron 15.0%
!! ATGATGTTAATGTTTATATT+TGG - chr3_2:42414488-42414507 Msa0406190:intron 15.0%
!! ATTAATTACATACAAATGTA+GGG + chr3_2:42414583-42414602 None:intergenic 15.0%
!! AATTAATTACATACAAATGT+AGG + chr3_2:42414584-42414603 None:intergenic 15.0%
!! ATGAAATTACTTCAAAAATT+TGG - chr3_2:42414726-42414745 Msa0406190:intron 15.0%
!! TAACTATATGTATTAAGCAA+TGG + chr3_2:42409353-42409372 None:intergenic 20.0%
!! AGAGAAGAATGAAAAATTTA+GGG + chr3_2:42409398-42409417 None:intergenic 20.0%
!! AAGAGAAGAATGAAAAATTT+AGG + chr3_2:42409399-42409418 None:intergenic 20.0%
!! AAAAAAATCAAGAAGAAGAA+GGG + chr3_2:42409483-42409502 None:intergenic 20.0%
!! TTCATATTTCAATCGTTAAA+TGG - chr3_2:42409564-42409583 Msa0406190:intron 20.0%
!!! ATCTTGATGTTTGTTATTAA+TGG - chr3_2:42409990-42410009 Msa0406190:intron 20.0%
!! AGAGTAAAAAATTAACAAAC+TGG + chr3_2:42410184-42410203 None:intergenic 20.0%
!! TGAAAAAAGGTTAATAGTAT+GGG + chr3_2:42410478-42410497 None:intergenic 20.0%
!! TTGAAAAAAGGTTAATAGTA+TGG + chr3_2:42410479-42410498 None:intergenic 20.0%
!! TATAGATAAATTGATACGAA+GGG + chr3_2:42410710-42410729 None:intergenic 20.0%
!! TTATAGATAAATTGATACGA+AGG + chr3_2:42410711-42410730 None:intergenic 20.0%
!! TTCGTATCAATTTATCTATA+AGG - chr3_2:42410710-42410729 Msa0406190:intron 20.0%
!!! ATTGATTTTCCATTCTAAAA+AGG - chr3_2:42410835-42410854 Msa0406190:intron 20.0%
!!! TTGATTTTCCATTCTAAAAA+GGG - chr3_2:42410836-42410855 Msa0406190:intron 20.0%
!!! AAAAGGGTATTGTAAAATAT+TGG - chr3_2:42410852-42410871 Msa0406190:intron 20.0%
!! TGTTCATTAATTGATGAATT+TGG - chr3_2:42410983-42411002 Msa0406190:intron 20.0%
!! TATTTACTTATAATAGTGAC+CGG - chr3_2:42411066-42411085 Msa0406190:intron 20.0%
!!! GATTTTATAGTTTTTCACTA+AGG - chr3_2:42411574-42411593 Msa0406190:CDS 20.0%
!!! CAAAATACATTATTGATAGT+AGG + chr3_2:42411902-42411921 None:intergenic 20.0%
!!! CTACTATCAATAATGTATTT+TGG - chr3_2:42411900-42411919 Msa0406190:intron 20.0%
!!! AGAAATTAATGAAAAGTGTA+CGG - chr3_2:42412128-42412147 Msa0406190:intron 20.0%
!! TCATGTATACAAATCTTTAA+AGG - chr3_2:42412232-42412251 Msa0406190:intron 20.0%
!! CATGTATACAAATCTTTAAA+GGG - chr3_2:42412233-42412252 Msa0406190:intron 20.0%
!! TGTTATATAAGAAGAGAAAA+AGG - chr3_2:42412273-42412292 Msa0406190:intron 20.0%
!! GTTATATAAGAAGAGAAAAA+GGG - chr3_2:42412274-42412293 Msa0406190:intron 20.0%
!!! ATTTGATTTAGACTCTATAA+TGG + chr3_2:42412614-42412633 None:intergenic 20.0%
!!! TTTTGTCATGTATTTTTTCT+TGG + chr3_2:42412804-42412823 None:intergenic 20.0%
!! TTATCATGTTTATTCATTTG+TGG + chr3_2:42412958-42412977 None:intergenic 20.0%
!! GTGTATAAATTTAATTACCT+GGG + chr3_2:42413138-42413157 None:intergenic 20.0%
!! TGTGTATAAATTTAATTACC+TGG + chr3_2:42413139-42413158 None:intergenic 20.0%
!!! GAATTGAATGTATTTTCATA+CGG + chr3_2:42413178-42413197 None:intergenic 20.0%
!!! CCTAATTCTATATGTATTTT+TGG + chr3_2:42413632-42413651 None:intergenic 20.0%
!! CCAAAAATACATATAGAATT+AGG - chr3_2:42413629-42413648 Msa0406190:intron 20.0%
!! ATAAGTCTTACATATACTAT+TGG - chr3_2:42413676-42413695 Msa0406190:intron 20.0%
!!! ACAAATCTATTTCTTACAAT+TGG + chr3_2:42413748-42413767 None:intergenic 20.0%
!! TTGATTGTATATTAATTCCA+TGG + chr3_2:42413812-42413831 None:intergenic 20.0%
!! ATGGAATTAATATACAATCA+AGG - chr3_2:42413811-42413830 Msa0406190:intron 20.0%
!! AAGGATATGACAATTATTTA+AGG - chr3_2:42413830-42413849 Msa0406190:intron 20.0%
!!! TATGACTTGATTTATTTTAG+GGG + chr3_2:42413885-42413904 None:intergenic 20.0%
!! TTCAATAAGAAATATTTGGT+TGG - chr3_2:42414400-42414419 Msa0406190:intron 20.0%
!! ACTTTATTGTATAGAAAAGA+CGG - chr3_2:42414756-42414775 Msa0406190:intron 20.0%
!!! GTCATTCAATTTTAAATCAA+TGG - chr3_2:42414847-42414866 Msa0406190:CDS 20.0%
!! ATATAAATGTGATTTCTCAA+TGG + chr3_2:42415122-42415141 None:intergenic 20.0%
!! TTTCATTCTTCTCTTTTTGA+TGG - chr3_2:42409404-42409423 Msa0406190:CDS 25.0%
! AAAAAATCAAGAAGAAGAAG+GGG + chr3_2:42409482-42409501 None:intergenic 25.0%
! GAAAAAAATCAAGAAGAAGA+AGG + chr3_2:42409484-42409503 None:intergenic 25.0%
! AAGTAAATTAGGGATTAACT+TGG - chr3_2:42409623-42409642 Msa0406190:CDS 25.0%
! TTTCACAGCTTTACAAAATA+TGG - chr3_2:42409666-42409685 Msa0406190:intron 25.0%
! ACAAAGAACAGATAATTCAT+AGG + chr3_2:42409824-42409843 None:intergenic 25.0%
! GATATTGGAAAAAGAACAAA+AGG + chr3_2:42410306-42410325 None:intergenic 25.0%
!! TTGTTCTTTTTCCAATATCT+TGG - chr3_2:42410307-42410326 Msa0406190:intron 25.0%
! TTATCAAAGTTCCAAGATAT+TGG + chr3_2:42410321-42410340 None:intergenic 25.0%
!! AGAAGTAACAGCTTTAATTA+GGG - chr3_2:42410404-42410423 Msa0406190:intron 25.0%
! AACGAAAAAGGATTGAAAAA+AGG + chr3_2:42410491-42410510 None:intergenic 25.0%
! TTCTTGTCCAATTGAAAATT+AGG - chr3_2:42410616-42410635 Msa0406190:intron 25.0%
! TCTTGTCCAATTGAAAATTA+GGG - chr3_2:42410617-42410636 Msa0406190:intron 25.0%
!! TTGAAACCCTAATTTTCAAT+TGG + chr3_2:42410626-42410645 None:intergenic 25.0%
!! CCTTTTAACAAAGATATGAA+GGG + chr3_2:42410673-42410692 None:intergenic 25.0%
!! TCCTTTTAACAAAGATATGA+AGG + chr3_2:42410674-42410693 None:intergenic 25.0%
!!! TTACAATACCCTTTTTAGAA+TGG + chr3_2:42410847-42410866 None:intergenic 25.0%
! TTCCTTATAATAGTGATCAA+TGG + chr3_2:42410945-42410964 None:intergenic 25.0%
!!! ATTTTTTCAAATAATCCCTC+CGG + chr3_2:42411088-42411107 None:intergenic 25.0%
! TCAAGATGTAATTATGAAAG+AGG - chr3_2:42411111-42411130 Msa0406190:CDS 25.0%
! AATCATATAGGTACAGATAA+TGG + chr3_2:42411243-42411262 None:intergenic 25.0%
! ATAGGTACAGATAATCATAT+AGG + chr3_2:42411255-42411274 None:intergenic 25.0%
!! ACTTTTACAGATCAACATAT+AGG + chr3_2:42411273-42411292 None:intergenic 25.0%
! AGATTAAATTTATGAAGGTG+GGG + chr3_2:42411308-42411327 None:intergenic 25.0%
! CAGATTAAATTTATGAAGGT+GGG + chr3_2:42411309-42411328 None:intergenic 25.0%
! ACAGATTAAATTTATGAAGG+TGG + chr3_2:42411310-42411329 None:intergenic 25.0%
! AGGACAGATTAAATTTATGA+AGG + chr3_2:42411313-42411332 None:intergenic 25.0%
!!! TTAATCTGTCCTTTAGAATA+TGG - chr3_2:42411321-42411340 Msa0406190:intron 25.0%
! TAGTATGAATTATGAGGTTA+TGG + chr3_2:42411504-42411523 None:intergenic 25.0%
! AACCTCATAATTCATACTAA+TGG - chr3_2:42411505-42411524 Msa0406190:intron 25.0%
! TTCCATTAGTATGAATTATG+AGG + chr3_2:42411510-42411529 None:intergenic 25.0%
!!! AAATTTTTGGTCCAATACTA+AGG - chr3_2:42411538-42411557 Msa0406190:intron 25.0%
!!! ATGATAGTGTTATTTTTCTG+CGG - chr3_2:42411611-42411630 Msa0406190:CDS 25.0%
! TTCAATTTCTTTCATGCTTA+TGG - chr3_2:42411843-42411862 Msa0406190:intron 25.0%
! TATATAAGACTCATTGCAAA+AGG - chr3_2:42411986-42412005 Msa0406190:intron 25.0%
! AAATGAAACTTCATATACAC+AGG - chr3_2:42412039-42412058 Msa0406190:intron 25.0%
!! TCAACTTCAGAATTTTTCAT+TGG + chr3_2:42412155-42412174 None:intergenic 25.0%
!!! CATGATTTTTGTTTTAGCTT+CGG + chr3_2:42412217-42412236 None:intergenic 25.0%
!!! CACGTTTTTTAATCTGTATA+TGG - chr3_2:42412341-42412360 Msa0406190:intron 25.0%
!! AAAATGACATTTTGGATCTT+TGG - chr3_2:42412371-42412390 Msa0406190:intron 25.0%
!!! TAGACTCTATAATGGATTTT+GGG + chr3_2:42412606-42412625 None:intergenic 25.0%
!!! TTAGACTCTATAATGGATTT+TGG + chr3_2:42412607-42412626 None:intergenic 25.0%
!!! TTTTTTTCTTTTCCAATTGG+TGG + chr3_2:42412664-42412683 None:intergenic 25.0%
!!! TTTGTTTCTACTTTTCCTAT+GGG - chr3_2:42412692-42412711 Msa0406190:intron 25.0%
! AAAACTATTTAACGAGACAA+AGG - chr3_2:42412844-42412863 Msa0406190:intron 25.0%
!!! TGTTTTTAGGTAAATCCTTT+GGG + chr3_2:42412908-42412927 None:intergenic 25.0%
!!! TTGTTTTTAGGTAAATCCTT+TGG + chr3_2:42412909-42412928 None:intergenic 25.0%
! CAAGCAATTGTAGAAATATT+AGG + chr3_2:42413026-42413045 None:intergenic 25.0%
!!! GTCACAATTTTTTTTACATG+AGG + chr3_2:42413276-42413295 None:intergenic 25.0%
!!! CTTTAAAATTATCATCCACA+AGG - chr3_2:42413306-42413325 Msa0406190:intron 25.0%
! AAAGAACTAAAGAATCTTGA+GGG - chr3_2:42413547-42413566 Msa0406190:intron 25.0%
!! TGATTAGCCGTAAATTTATT+TGG - chr3_2:42414037-42414056 Msa0406190:intron 25.0%
! GGCTAAACCAAATAAATTTA+CGG + chr3_2:42414047-42414066 None:intergenic 25.0%
! AACCTAACTGCAAATATAAA+AGG + chr3_2:42414068-42414087 None:intergenic 25.0%
! AGAAATAAAATCTAACAAGG+AGG + chr3_2:42414177-42414196 None:intergenic 25.0%
!! TAAGAAATATTTGGTTGGTA+AGG - chr3_2:42414405-42414424 Msa0406190:intron 25.0%
! CTATATTCATATAGGGTATA+GGG + chr3_2:42414548-42414567 None:intergenic 25.0%
! ACTATATTCATATAGGGTAT+AGG + chr3_2:42414549-42414568 None:intergenic 25.0%
! TGTTTATTTCACACTTACAA+GGG + chr3_2:42414638-42414657 None:intergenic 25.0%
! ATGTTTATTTCACACTTACA+AGG + chr3_2:42414639-42414658 None:intergenic 25.0%
! ACAATTACATTACACGATTT+AGG + chr3_2:42414946-42414965 None:intergenic 25.0%
! GATTCATTCAAATACTTACA+TGG - chr3_2:42415001-42415020 Msa0406190:intron 25.0%
! GATGATAAAAAGTTGTTGAA+TGG - chr3_2:42415190-42415209 Msa0406190:intron 25.0%
ACTAGCTATATGTAGTTGTT+TGG + chr3_2:42409311-42409330 None:intergenic 30.0%
ATAGCTAGTGCAAATTCATA+AGG - chr3_2:42409322-42409341 Msa0406190:CDS 30.0%
GGCAATATTTGAAAGAAACA+AGG + chr3_2:42409377-42409396 None:intergenic 30.0%
AGGATCTTCTCAAAAGAAAA+TGG - chr3_2:42409708-42409727 Msa0406190:intron 30.0%
GGATCTTCTCAAAAGAAAAT+GGG - chr3_2:42409709-42409728 Msa0406190:intron 30.0%
AAAACTTTGTGGGATTTATG+AGG - chr3_2:42410111-42410130 Msa0406190:intron 30.0%
AATTAACAAACTGGAGTTTG+AGG + chr3_2:42410175-42410194 None:intergenic 30.0%
! TCTGAAATAAGAGATAGAAG+AGG - chr3_2:42410350-42410369 Msa0406190:intron 30.0%
! CAGAAGTAACAGCTTTAATT+AGG - chr3_2:42410403-42410422 Msa0406190:intron 30.0%
TTAGGGTTAGAAAGATTTCT+AGG - chr3_2:42410421-42410440 Msa0406190:intron 30.0%
AAAGAGAGAGAAAACGAAAA+AGG + chr3_2:42410503-42410522 None:intergenic 30.0%
CATGGTTGATTACATATGTA+GGG + chr3_2:42410526-42410545 None:intergenic 30.0%
TCATGGTTGATTACATATGT+AGG + chr3_2:42410527-42410546 None:intergenic 30.0%
ATGTAATCAACCATGAAACT+TGG - chr3_2:42410531-42410550 Msa0406190:intron 30.0%
!! AATGATGATGGAAATGAAGA+GGG + chr3_2:42410594-42410613 None:intergenic 30.0%
ACAAAGATATGAAGGGATTA+GGG + chr3_2:42410666-42410685 None:intergenic 30.0%
AACAAAGATATGAAGGGATT+AGG + chr3_2:42410667-42410686 None:intergenic 30.0%
CCCTTCATATCTTTGTTAAA+AGG - chr3_2:42410670-42410689 Msa0406190:intron 30.0%
CTCCATTGATCACTATTATA+AGG - chr3_2:42410940-42410959 Msa0406190:intron 30.0%
AACTACAGACCATATTCTAA+AGG + chr3_2:42411333-42411352 None:intergenic 30.0%
TTAGAATATGGTCTGTAGTT+AGG - chr3_2:42411333-42411352 Msa0406190:intron 30.0%
TAGAATATGGTCTGTAGTTA+GGG - chr3_2:42411334-42411353 Msa0406190:intron 30.0%
TTCCACAACAAATTAACTTC+TGG - chr3_2:42411401-42411420 Msa0406190:intron 30.0%
!! TACCAGAAGTTAATTTGTTG+TGG + chr3_2:42411406-42411425 None:intergenic 30.0%
!!! TGATAGTGTTATTTTTCTGC+GGG - chr3_2:42411612-42411631 Msa0406190:CDS 30.0%
! GAAAAGCATAAGAAAGAGAA+GGG + chr3_2:42411826-42411845 None:intergenic 30.0%
! TGAAAAGCATAAGAAAGAGA+AGG + chr3_2:42411827-42411846 None:intergenic 30.0%
!! CAAATCTTTAAAGGGTATTG+TGG - chr3_2:42412241-42412260 Msa0406190:intron 30.0%
TGTTATTACACCATGTTGAA+TGG - chr3_2:42412310-42412329 Msa0406190:intron 30.0%
! GTTGAGAGAAAATGACATTT+TGG - chr3_2:42412363-42412382 Msa0406190:intron 30.0%
CTAAATTAACCCACCTAAAT+TGG - chr3_2:42412474-42412493 Msa0406190:intron 30.0%
ATTATCTCCGATACCAATTT+AGG + chr3_2:42412490-42412509 None:intergenic 30.0%
ACATCGTTAATTAGAGTACA+AGG - chr3_2:42412577-42412596 Msa0406190:intron 30.0%
CATCGTTAATTAGAGTACAA+GGG - chr3_2:42412578-42412597 Msa0406190:intron 30.0%
!!! CTTTGTTTCTACTTTTCCTA+TGG - chr3_2:42412691-42412710 Msa0406190:intron 30.0%
TTCAATCATTACAGAGAAGA+CGG - chr3_2:42412762-42412781 Msa0406190:intron 30.0%
ATTCCATTACCCAATTATAG+AGG - chr3_2:42412871-42412890 Msa0406190:intron 30.0%
TTCCATTACCCAATTATAGA+GGG - chr3_2:42412872-42412891 Msa0406190:intron 30.0%
ATATTAGGACGATGGTTAAT+TGG + chr3_2:42413011-42413030 None:intergenic 30.0%
TTGTAGAAATATTAGGACGA+TGG + chr3_2:42413019-42413038 None:intergenic 30.0%
! ATGAGGCACCATATATTATA+TGG + chr3_2:42413259-42413278 None:intergenic 30.0%
CTTGCTGGTAAAACTAATAT+TGG + chr3_2:42413354-42413373 None:intergenic 30.0%
GAGACATTCAGAATCTAAAT+AGG - chr3_2:42413401-42413420 Msa0406190:intron 30.0%
ATTCAGAATCTAAATAGGTC+AGG - chr3_2:42413406-42413425 Msa0406190:intron 30.0%
CAAAGAACTAAAGAATCTTG+AGG - chr3_2:42413546-42413565 Msa0406190:intron 30.0%
ATAGAATTAGGTCAAGTCTA+CGG - chr3_2:42413641-42413660 Msa0406190:intron 30.0%
GTAAGAAATAGATTTGTGCA+TGG - chr3_2:42413751-42413770 Msa0406190:intron 30.0%
! AGCCTTTTATATTTGCAGTT+AGG - chr3_2:42414063-42414082 Msa0406190:intron 30.0%
CACGACAAAGTTACATATTT+GGG - chr3_2:42414825-42414844 Msa0406190:CDS 30.0%
!! AAAAGTTGTTGATAATGTGC+AGG - chr3_2:42415025-42415044 Msa0406190:intron 30.0%
TAGCTCGTAGATAATTGTTA+TGG + chr3_2:42415067-42415086 None:intergenic 30.0%
TAACAATTATCTACGAGCTA+AGG - chr3_2:42415067-42415086 Msa0406190:intron 30.0%
ATATGACCGAAATTTCTTTC+CGG - chr3_2:42415307-42415326 Msa0406190:intron 30.0%
GATTTACCGGAAAGAAATTT+CGG + chr3_2:42415316-42415335 None:intergenic 30.0%
AATATGGAGCTACCAAATGA+AGG - chr3_2:42409682-42409701 Msa0406190:intron 35.0%
TCTCAAAAGAAAATGGGAAG+AGG - chr3_2:42409715-42409734 Msa0406190:intron 35.0%
CTCAAAAGAAAATGGGAAGA+GGG - chr3_2:42409716-42409735 Msa0406190:intron 35.0%
GAGGGAAAATTGAAATCAAG+AGG - chr3_2:42409734-42409753 Msa0406190:intron 35.0%
GGATTGAAAACACTACCAAT+AGG - chr3_2:42409755-42409774 Msa0406190:intron 35.0%
TGTATGAATATGCCAACAAC+AGG - chr3_2:42409887-42409906 Msa0406190:intron 35.0%
TGTAAACTCAAACCTGTTGT+TGG + chr3_2:42409902-42409921 None:intergenic 35.0%
CTACAAATCTTGATGAGTCT+TGG - chr3_2:42409964-42409983 Msa0406190:intron 35.0%
AACTGGAGTTTGAGGAAAAT+TGG + chr3_2:42410167-42410186 None:intergenic 35.0%
! GCAGATTTTTCCAAGTTTCA+TGG + chr3_2:42410544-42410563 None:intergenic 35.0%
!! GAATGATGATGGAAATGAAG+AGG + chr3_2:42410595-42410614 None:intergenic 35.0%
TGGACAAGAAAGAATGATGA+TGG + chr3_2:42410606-42410625 None:intergenic 35.0%
AACCTGTTCTCAATACTGTT+AGG - chr3_2:42410899-42410918 Msa0406190:intron 35.0%
! AACCTAACAGTATTGAGAAC+AGG + chr3_2:42410904-42410923 None:intergenic 35.0%
! TACTGTTAGGTTTGTTTGAG+TGG - chr3_2:42410912-42410931 Msa0406190:intron 35.0%
TTACTTATAATAGTGACCGG+AGG - chr3_2:42411069-42411088 Msa0406190:intron 35.0%
TACTTATAATAGTGACCGGA+GGG - chr3_2:42411070-42411089 Msa0406190:intron 35.0%
! CTTATAAACCCATGTTGGTT+AGG + chr3_2:42411363-42411382 None:intergenic 35.0%
TTGTGGAAAACAATGAGTCA+TGG + chr3_2:42411389-42411408 None:intergenic 35.0%
! GTCTTTGTTGTCCTTAGTAT+TGG + chr3_2:42411552-42411571 None:intergenic 35.0%
!!! GATAGTGTTATTTTTCTGCG+GGG - chr3_2:42411613-42411632 Msa0406190:CDS 35.0%
AACTTCATATACACAGGTTG+AGG - chr3_2:42412045-42412064 Msa0406190:intron 35.0%
TATTACACCATGTTGAATGG+TGG - chr3_2:42412313-42412332 Msa0406190:intron 35.0%
! TTTTGGATCTTTGGCAAGTT+AGG - chr3_2:42412380-42412399 Msa0406190:intron 35.0%
TAACCCACCTAAATTGGTAT+CGG - chr3_2:42412480-42412499 Msa0406190:intron 35.0%
AAAATAGTTGTTCATCCTCG+AGG + chr3_2:42412524-42412543 None:intergenic 35.0%
ATACAATGAAGACATGTGTG+TGG - chr3_2:42412632-42412651 Msa0406190:intron 35.0%
TACAATGAAGACATGTGTGT+GGG - chr3_2:42412633-42412652 Msa0406190:intron 35.0%
ATGATCTCGATTTAACCCAT+AGG + chr3_2:42412710-42412729 None:intergenic 35.0%
CTATTTAACGAGACAAAGGA+AGG - chr3_2:42412848-42412867 Msa0406190:intron 35.0%
GTGTTAGAGCAACAATTGAA+AGG - chr3_2:42413057-42413076 Msa0406190:intron 35.0%
TCAATTTGGATGATTCTTGC+TGG + chr3_2:42413369-42413388 None:intergenic 35.0%
TCGAATCTGTCTTCTCAATT+TGG + chr3_2:42413383-42413402 None:intergenic 35.0%
AAGCAGAGTTAGATCTAGAA+AGG - chr3_2:42413588-42413607 Msa0406190:intron 35.0%
CCAAATATGTAACTTTGTCG+TGG + chr3_2:42414827-42414846 None:intergenic 35.0%
CCACGACAAAGTTACATATT+TGG - chr3_2:42414824-42414843 Msa0406190:CDS 35.0%
!! CGTTGATTTGAGATTGAACA+AGG + chr3_2:42414913-42414932 None:intergenic 35.0%
TGATCACACATTGTTTGATC+TGG + chr3_2:42415266-42415285 None:intergenic 35.0%
TTCTTTCCGGTAAATCTTCT+TGG - chr3_2:42415320-42415339 Msa0406190:intron 35.0%
TCTGATCCAAGAAGATTTAC+CGG + chr3_2:42415329-42415348 None:intergenic 35.0%
AATCAAGAAGAAGAAGGGGT+TGG + chr3_2:42409478-42409497 None:intergenic 40.0%
GAAGATCCTTCACCTTCATT+TGG + chr3_2:42409697-42409716 None:intergenic 40.0%
TTAGGGTTTCCTAACCAACA+TGG - chr3_2:42411351-42411370 Msa0406190:intron 40.0%
TAGGGTTTCCTAACCAACAT+GGG - chr3_2:42411352-42411371 Msa0406190:intron 40.0%
GGACACTTATAAACCCATGT+TGG + chr3_2:42411368-42411387 None:intergenic 40.0%
AGTGTTACGTTAGATGCAGA+GGG + chr3_2:42411766-42411785 None:intergenic 40.0%
TAGTGTTACGTTAGATGCAG+AGG + chr3_2:42411767-42411786 None:intergenic 40.0%
! AGAGAAGGGTTCTTTTCTTG+TGG + chr3_2:42411812-42411831 None:intergenic 40.0%
!! AAAGGGTATTGTGGTAATCG+AGG - chr3_2:42412250-42412269 Msa0406190:intron 40.0%
TCTCCGATACCAATTTAGGT+GGG + chr3_2:42412486-42412505 None:intergenic 40.0%
ATCTCCGATACCAATTTAGG+TGG + chr3_2:42412487-42412506 None:intergenic 40.0%
! TAATCGAATTTGAGACCTCG+AGG - chr3_2:42412506-42412525 Msa0406190:intron 40.0%
ACCACTTAATCCGATCTACA+CGG - chr3_2:42412734-42412753 Msa0406190:intron 40.0%
TTGAAATACCCCGTGTAGAT+CGG + chr3_2:42412747-42412766 None:intergenic 40.0%
CACCCTCTATAATTGGGTAA+TGG + chr3_2:42412877-42412896 None:intergenic 40.0%
TCCTTGCACCCTCTATAATT+GGG + chr3_2:42412883-42412902 None:intergenic 40.0%
!! TAATTGGTTTGAGTGGACGA+TGG + chr3_2:42412995-42413014 None:intergenic 40.0%
!! CGATGGTTAATTGGTTTGAG+TGG + chr3_2:42413002-42413021 None:intergenic 40.0%
AGATACAGATTCTGCGTTAG+TGG + chr3_2:42413105-42413124 None:intergenic 40.0%
! TGTATCTGAAGCTAATACCC+AGG - chr3_2:42413118-42413137 Msa0406190:intron 40.0%
! TTTTTCTGCAGACACATCCT+TGG - chr3_2:42413499-42413518 Msa0406190:intron 40.0%
CTTGAGGGTAGATTAGAGAA+AGG - chr3_2:42413562-42413581 Msa0406190:intron 40.0%
TTGCATGTTAGACAAAGCCA+TGG - chr3_2:42413792-42413811 Msa0406190:intron 40.0%
ATGTGGAGTTCATGCAAAAG+CGG - chr3_2:42414247-42414266 Msa0406190:intron 40.0%
CTATCAATAATTCCGTGACG+CGG - chr3_2:42414793-42414812 Msa0406190:CDS 40.0%
ATATGCTTGCGATGAAGGTA+AGG + chr3_2:42415291-42415310 None:intergenic 40.0%
GAGCTACCAAATGAAGGTGA+AGG - chr3_2:42409688-42409707 Msa0406190:intron 45.0%
! GCAAAAGGTGACTTGCCTAT+TGG + chr3_2:42409773-42409792 None:intergenic 45.0%
! ACCTTTTGCAAACGACGCAA+TGG - chr3_2:42409784-42409803 Msa0406190:intron 45.0%
TCCATTGCGTCGTTTGCAAA+AGG + chr3_2:42409788-42409807 None:intergenic 45.0%
ACGAGTGGAGAAGACAACAA+GGG + chr3_2:42409860-42409879 None:intergenic 45.0%
!! GAGTGCATGACAGCTTTTTC+TGG + chr3_2:42410566-42410585 None:intergenic 45.0%
TGTCAGTCCACCATTCAACA+TGG + chr3_2:42412323-42412342 None:intergenic 45.0%
GTGTGGGTAAATCCACCAAT+TGG - chr3_2:42412649-42412668 Msa0406190:intron 45.0%
CCACTTAATCCGATCTACAC+GGG - chr3_2:42412735-42412754 Msa0406190:intron 45.0%
CACTTAATCCGATCTACACG+GGG - chr3_2:42412736-42412755 Msa0406190:intron 45.0%
! ACCCAATTATAGAGGGTGCA+AGG - chr3_2:42412879-42412898 Msa0406190:intron 45.0%
CTCCTTGCACCCTCTATAAT+TGG + chr3_2:42412884-42412903 None:intergenic 45.0%
GTGTTAGTGTGTCAACCTTG+TGG + chr3_2:42413324-42413343 None:intergenic 45.0%
! TGAGACGTTGTTTGCTGATG+TGG - chr3_2:42414230-42414249 Msa0406190:intron 45.0%
TGTGGAGTTCATGCAAAAGC+GGG - chr3_2:42414248-42414267 Msa0406190:intron 45.0%
CGCGTCACGGAATTATTGAT+AGG + chr3_2:42414795-42414814 None:intergenic 45.0%
!!! AAATTTTTTATGATAAAAAA+AGG - chr3_2:42412101-42412120 Msa0406190:intron 5.0%
!!! AATTTTTTATGATAAAAAAA+GGG - chr3_2:42412102-42412121 Msa0406190:intron 5.0%
!! ACAAATAAATTATAATTTAT+TGG + chr3_2:42414018-42414037 None:intergenic 5.0%
CACGAGTGGAGAAGACAACA+AGG + chr3_2:42409861-42409880 None:intergenic 50.0%
! CTTGTTGTCTTCTCCACTCG+TGG - chr3_2:42409859-42409878 Msa0406190:intron 50.0%
TTCATACAAGCGACCACGAG+TGG + chr3_2:42409875-42409894 None:intergenic 50.0%
CCCGTGTAGATCGGATTAAG+TGG + chr3_2:42412738-42412757 None:intergenic 50.0%
CACATCCTTGGTGAAGCTCT+CGG - chr3_2:42413511-42413530 Msa0406190:intron 50.0%
CAGCAAACAACGTCTCATGC+TGG + chr3_2:42414227-42414246 None:intergenic 50.0%
GTGGATCTTTAACCGCGTCA+CGG + chr3_2:42414808-42414827 None:intergenic 50.0%
CGGTCATATGCTTGCGATGA+AGG + chr3_2:42415296-42415315 None:intergenic 50.0%
! ACACAAGTTGGAGCGCAGTT+TGG + chr3_2:42415376-42415395 None:intergenic 50.0%
GAGATCCGAGAGCTTCACCA+AGG + chr3_2:42413519-42413538 None:intergenic 55.0%
! GAGGGTGCAAGGAGACCCAA+AGG - chr3_2:42412890-42412909 Msa0406190:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 42409294 42415397 42409294 ID=Msa0406190;Name=Msa0406190
chr3_2 mRNA 42409294 42415397 42409294 ID=Msa0406190-mRNA-1;Parent=Msa0406190;Name=Msa0406190-mRNA-1;_AED=0.18;_eAED=0.18;_QI=61|1|0.87|1|0.85|0.75|8|0|243
chr3_2 exon 42409294 42409473 42409294 ID=Msa0406190-mRNA-1:exon:8173;Parent=Msa0406190-mRNA-1
chr3_2 exon 42409603 42409644 42409603 ID=Msa0406190-mRNA-1:exon:8172;Parent=Msa0406190-mRNA-1
chr3_2 exon 42410422 42410463 42410422 ID=Msa0406190-mRNA-1:exon:8171;Parent=Msa0406190-mRNA-1
chr3_2 exon 42411082 42411181 42411082 ID=Msa0406190-mRNA-1:exon:8170;Parent=Msa0406190-mRNA-1
chr3_2 exon 42411269 42411330 42411269 ID=Msa0406190-mRNA-1:exon:8169;Parent=Msa0406190-mRNA-1
chr3_2 exon 42411552 42411633 42411552 ID=Msa0406190-mRNA-1:exon:8168;Parent=Msa0406190-mRNA-1
chr3_2 exon 42414783 42415017 42414783 ID=Msa0406190-mRNA-1:exon:8167;Parent=Msa0406190-mRNA-1
chr3_2 exon 42415348 42415397 42415348 ID=Msa0406190-mRNA-1:exon:8166;Parent=Msa0406190-mRNA-1
chr3_2 five_prime_UTR 42415348 42415397 42415348 ID=Msa0406190-mRNA-1:five_prime_utr;Parent=Msa0406190-mRNA-1
chr3_2 five_prime_UTR 42415007 42415017 42415007 ID=Msa0406190-mRNA-1:five_prime_utr;Parent=Msa0406190-mRNA-1
chr3_2 CDS 42414783 42415006 42414783 ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2 CDS 42411552 42411633 42411552 ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2 CDS 42411269 42411330 42411269 ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2 CDS 42411082 42411181 42411082 ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2 CDS 42410422 42410463 42410422 ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2 CDS 42409603 42409644 42409603 ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2 CDS 42409294 42409473 42409294 ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
Gene Sequence

>Msa0406190

ATGGAGCTACCAAATGAAGGTGAAGGATCTTCTCAAAAGAAAATGGGAAGAGGGAAAATTGAAATCAAGAGGATTGAAAACACTACCAATAGGCAAGTCACCTTTTGCAAACGACGCAATGGATTGTTGAAGAAAGCCTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCCACTCGTGGTCGCTTGTATGAATATGCCAACAACAGTGTTAGAGCAACAATTGAAAGGTACAAAAAAGCTTGTGCTGCTTCCACTAACGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAGATTCGAGACATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTCGGATCTCTGAGTCTCAAAGAACTAAAGAATCTTGAGGGTAGATTAGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTACGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAACAAAATTTGATGCCAGATCAAACAATGTGTGATCAGTCCTTACCTTCATCGCAAGCATATGACCGAAATTTCTTTCCGGTAAATCTTCTTGGATCAGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCGCTCCAACTTGTGTAA
Protein sequence

>Msa0406190

MELPNEGEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPDQTMCDQSLPSSQAYDRNFFPVNLLGSDQQQYSRQDQTALQLV*