AlfalfaGEDB | Msa0406190

M. sativa cultivar zhongmu-4 / Msa0406190

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010097 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406190	XP_024636027.1	99.180	244	1	1	1	243	1	244	6.67e-176	493

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406190	sp\|Q93XH4\|MADS1_VITVI	77.391	230	46	5	15	243	1	225	1.39e-120	345

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406190	R9R6G5	99.180	244	1	1	1	243	1	244	3.19e-176	493

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TFs/TRs:

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Gene ID	Type	Classification
Msa0406190	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406190	MtrunA17_Chr3g0097101	99.180	244	1	1	1	243	1	244	6.14e-180	493
Msa0406190	MtrunA17_Chr8g0380021	62.041	245	90	2	1	243	1	244	8.42e-105	303
Msa0406190	MtrunA17_Chr2g0284911	59.023	266	80	5	1	243	1	260	1.42e-102	298
Msa0406190	MtrunA17_Chr3g0077501	59.565	230	83	3	15	242	1	222	1.60e-92	271
Msa0406190	MtrunA17_Chr8g0351051	50.877	171	84	0	15	185	1	171	3.69e-53	172
Msa0406190	MtrunA17_Chr8g0351031	44.340	212	110	3	15	220	1	210	1.24e-52	170
Msa0406190	MtrunA17_Chr5g0420091	47.701	174	90	1	15	187	1	174	5.92e-47	155
Msa0406190	MtrunA17_Chr7g0246431	40.670	209	124	0	15	223	1	209	1.06e-46	154
Msa0406190	MtrunA17_Chr7g0220111	42.793	222	116	5	15	228	1	219	6.16e-46	153
Msa0406190	MtrunA17_Chr8g0351041	53.793	145	62	2	15	156	1	143	1.08e-45	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406190	AT3G58780.1	71.369	241	63	3	8	243	9	248	2.55e-119	340
Msa0406190	AT3G58780.5	71.369	241	63	3	8	243	15	254	4.17e-119	340
Msa0406190	AT2G42830.1	71.610	236	63	2	11	243	12	246	2.19e-118	338
Msa0406190	AT2G42830.2	71.008	238	63	3	11	243	12	248	1.44e-116	333
Msa0406190	AT3G58780.3	64.662	266	63	4	8	243	9	273	2.48e-113	326
Msa0406190	AT3G58780.4	62.774	274	63	4	8	243	9	281	3.94e-112	323
Msa0406190	AT3G58780.2	68.880	241	62	4	8	243	9	241	5.63e-112	322
Msa0406190	AT4G18960.1	62.857	245	82	4	7	243	9	252	4.04e-104	302
Msa0406190	AT4G09960.6	63.551	214	72	2	15	227	2	210	3.42e-94	276
Msa0406190	AT4G09960.1	63.551	214	72	2	15	227	1	209	3.73e-94	276

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Find 47 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTAAAGAATCTTGA+GGG	0.492203	3_2:-42411122	Msa0406190:CDS
AAGCAGAGTTAGATCTAGAA+AGG	0.478447	3_2:-42411081	Msa0406190:intron
AATATGGAGCTACCAAATGA+AGG	0.557752	3_2:-42414987	Msa0406190:CDS
ACAAAGAACAGATAATTCAT+AGG	0.465996	3_2:+42414848	None:intergenic
ACACAAGTTGGAGCGCAGTT+TGG	0.446128	3_2:+42409296	None:intergenic
ACGAGTGGAGAAGACAACAA+GGG	0.733610	3_2:+42414812	None:intergenic
ACTAGCTATATGTAGTTGTT+TGG	0.409086	3_2:+42415361	None:intergenic
AGATACAGATTCTGCGTTAG+TGG	0.372608	3_2:+42411567	None:intergenic
AGGATCTTCTCAAAAGAAAA+TGG	0.268060	3_2:-42414961	Msa0406190:CDS
ATAGCTAGTGCAAATTCATA+AGG	0.498144	3_2:-42415347	Msa0406190:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAGCTATATGTAGTTGTT+TGG	+	chr3_2:42409311-42409330	None:intergenic	30.0%
ATAGCTAGTGCAAATTCATA+AGG	-	chr3_2:42409322-42409341	Msa0406190:CDS	30.0%
GGCAATATTTGAAAGAAACA+AGG	+	chr3_2:42409377-42409396	None:intergenic	30.0%
AGGATCTTCTCAAAAGAAAA+TGG	-	chr3_2:42409708-42409727	Msa0406190:intron	30.0%
GGATCTTCTCAAAAGAAAAT+GGG	-	chr3_2:42409709-42409728	Msa0406190:intron	30.0%
AAAACTTTGTGGGATTTATG+AGG	-	chr3_2:42410111-42410130	Msa0406190:intron	30.0%
AATTAACAAACTGGAGTTTG+AGG	+	chr3_2:42410175-42410194	None:intergenic	30.0%
TTAGGGTTAGAAAGATTTCT+AGG	-	chr3_2:42410421-42410440	Msa0406190:intron	30.0%
AAAGAGAGAGAAAACGAAAA+AGG	+	chr3_2:42410503-42410522	None:intergenic	30.0%
CATGGTTGATTACATATGTA+GGG	+	chr3_2:42410526-42410545	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	42409294	42415397	42409294	ID=Msa0406190;Name=Msa0406190
chr3_2	mRNA	42409294	42415397	42409294	ID=Msa0406190-mRNA-1;Parent=Msa0406190;Name=Msa0406190-mRNA-1;_AED=0.18;_eAED=0.18;_QI=61\|1\|0.87\|1\|0.85\|0.75\|8\|0\|243
chr3_2	exon	42409294	42409473	42409294	ID=Msa0406190-mRNA-1:exon:8173;Parent=Msa0406190-mRNA-1
chr3_2	exon	42409603	42409644	42409603	ID=Msa0406190-mRNA-1:exon:8172;Parent=Msa0406190-mRNA-1
chr3_2	exon	42410422	42410463	42410422	ID=Msa0406190-mRNA-1:exon:8171;Parent=Msa0406190-mRNA-1
chr3_2	exon	42411082	42411181	42411082	ID=Msa0406190-mRNA-1:exon:8170;Parent=Msa0406190-mRNA-1
chr3_2	exon	42411269	42411330	42411269	ID=Msa0406190-mRNA-1:exon:8169;Parent=Msa0406190-mRNA-1
chr3_2	exon	42411552	42411633	42411552	ID=Msa0406190-mRNA-1:exon:8168;Parent=Msa0406190-mRNA-1
chr3_2	exon	42414783	42415017	42414783	ID=Msa0406190-mRNA-1:exon:8167;Parent=Msa0406190-mRNA-1
chr3_2	exon	42415348	42415397	42415348	ID=Msa0406190-mRNA-1:exon:8166;Parent=Msa0406190-mRNA-1
chr3_2	five_prime_UTR	42415348	42415397	42415348	ID=Msa0406190-mRNA-1:five_prime_utr;Parent=Msa0406190-mRNA-1
chr3_2	five_prime_UTR	42415007	42415017	42415007	ID=Msa0406190-mRNA-1:five_prime_utr;Parent=Msa0406190-mRNA-1
chr3_2	CDS	42414783	42415006	42414783	ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2	CDS	42411552	42411633	42411552	ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2	CDS	42411269	42411330	42411269	ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2	CDS	42411082	42411181	42411082	ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2	CDS	42410422	42410463	42410422	ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2	CDS	42409603	42409644	42409603	ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1
chr3_2	CDS	42409294	42409473	42409294	ID=Msa0406190-mRNA-1:cds;Parent=Msa0406190-mRNA-1

Gene Sequence

>Msa0406190

ATGGAGCTACCAAATGAAGGTGAAGGATCTTCTCAAAAGAAAATGGGAAGAGGGAAAATTGAAATCAAGAGGATTGAAAACACTACCAATAGGCAAGTCACCTTTTGCAAACGACGCAATGGATTGTTGAAGAAAGCCTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCCACTCGTGGTCGCTTGTATGAATATGCCAACAACAGTGTTAGAGCAACAATTGAAAGGTACAAAAAAGCTTGTGCTGCTTCCACTAACGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAGATTCGAGACATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTCGGATCTCTGAGTCTCAAAGAACTAAAGAATCTTGAGGGTAGATTAGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTACGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAACAAAATTTGATGCCAGATCAAACAATGTGTGATCAGTCCTTACCTTCATCGCAAGCATATGACCGAAATTTCTTTCCGGTAAATCTTCTTGGATCAGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCGCTCCAACTTGTGTAA

Protein sequence

>Msa0406190

MELPNEGEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPDQTMCDQSLPSSQAYDRNFFPVNLLGSDQQQYSRQDQTALQLV*