AlfalfaGEDB | Msa0406440

M. sativa cultivar zhongmu-4 / Msa0406440

KEGG: K04498
GO: -
PFAM: PF02135.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406440	AES73232.2	93.023	43	3	0	34	76	1288	1330	4.91e-17	86.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406440	G7J5R6	93.023	43	3	0	34	76	1288	1330	2.35e-17	86.3

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TFs/TRs:

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Gene ID	Type	Classification
Msa0406440	TR	TAZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406440	MtrunA17_Chr3g0133461	93.023	43	3	0	34	76	1236	1278	5.17e-21	85.9
Msa0406440	MtrunA17_Chr3g0133461	86.486	37	5	0	1	37	1076	1112	7.78e-17	74.3
Msa0406440	MtrunA17_Chr5g0438991	76.000	50	12	0	27	76	860	909	7.25e-20	82.8
Msa0406440	MtrunA17_Chr5g0438991	70.270	37	11	0	1	37	760	796	6.45e-12	60.1
Msa0406440	MtrunA17_Chr3g0138411	71.667	60	12	2	17	76	1087	1141	1.38e-19	82.0
Msa0406440	MtrunA17_Chr3g0138411	78.378	37	8	0	1	37	947	983	6.91e-14	65.9
Msa0406440	MtrunA17_Chr6g0456861	71.429	49	12	1	34	80	670	718	1.80e-16	73.2
Msa0406440	MtrunA17_Chr5g0401991	75.676	37	9	0	1	37	86	122	1.21e-13	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 13 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATATCATTATGTTTAGTGT+TGG	0.474871	3_2:-43148704	None:intergenic
AGCTGTTCTCTCATGCCAGT+AGG	0.676221	3_2:+43149275	Msa0406440:CDS
ATCATTATGTTTAGTGTTGG+AGG	0.449050	3_2:-43148701	None:intergenic
ATGGGTGTGCATCAGAACTA+TGG	0.476458	3_2:-43148541	None:intergenic
CACTAGAATTTCGCACCTAC+TGG	0.421340	3_2:-43149290	None:intergenic
CATTATGTTTAGTGTTGGAG+GGG	0.505283	3_2:-43148699	None:intergenic
CGAGTTGCATACTCTTTGTC+AGG	0.461409	3_2:+43148574	Msa0406440:CDS
GAAAGTGACAAAGCAGTCGT+TGG	0.555810	3_2:+43149604	Msa0406440:CDS
GATGCACACCCATCAAAGAA+TGG	0.560620	3_2:+43148551	Msa0406440:CDS
GCAACTCGCCATTCTTTGAT+GGG	0.505596	3_2:-43148559	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGATTCAACTTGTGTTCA+TGG	-	chr3_2:43148979-43148998	None:intergenic	30.0%
TCAAGACCAATATATCAATC+TGG	+	chr3_2:43149046-43149065	Msa0406440:intron	30.0%
ATCAGGAGTAAAATGAGAAA+AGG	+	chr3_2:43149071-43149090	Msa0406440:intron	30.0%
TCAGGAGTAAAATGAGAAAA+GGG	+	chr3_2:43149072-43149091	Msa0406440:intron	30.0%
CAAAATCTCTCAAATTCTCT+AGG	-	chr3_2:43149438-43149457	None:intergenic	30.0%
TTTGATTCAACTTGTGTTCA+TGG	-	chr3_2:43148979-43148998	None:intergenic	30.0%
TCAAGACCAATATATCAATC+TGG	+	chr3_2:43149046-43149065	Msa0406440:intron	30.0%
ATCAGGAGTAAAATGAGAAA+AGG	+	chr3_2:43149071-43149090	Msa0406440:intron	30.0%
TCAGGAGTAAAATGAGAAAA+GGG	+	chr3_2:43149072-43149091	Msa0406440:intron	30.0%
CAAAATCTCTCAAATTCTCT+AGG	-	chr3_2:43149438-43149457	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	43148539	43149630	43148539	ID=Msa0406440;Name=Msa0406440
chr3_2	mRNA	43148539	43149630	43148539	ID=Msa0406440-mRNA-1;Parent=Msa0406440;Name=Msa0406440-mRNA-1;_AED=0.41;_eAED=0.55;_QI=0\|0\|0\|0.75\|0.33\|0.25\|4\|0\|100
chr3_2	exon	43148539	43148595	43148539	ID=Msa0406440-mRNA-1:exon:8274;Parent=Msa0406440-mRNA-1
chr3_2	exon	43148682	43148726	43148682	ID=Msa0406440-mRNA-1:exon:8275;Parent=Msa0406440-mRNA-1
chr3_2	exon	43149181	43149309	43149181	ID=Msa0406440-mRNA-1:exon:8276;Parent=Msa0406440-mRNA-1
chr3_2	exon	43149562	43149630	43149562	ID=Msa0406440-mRNA-1:exon:8277;Parent=Msa0406440-mRNA-1
chr3_2	CDS	43148539	43148595	43148539	ID=Msa0406440-mRNA-1:cds;Parent=Msa0406440-mRNA-1
chr3_2	CDS	43148682	43148726	43148682	ID=Msa0406440-mRNA-1:cds;Parent=Msa0406440-mRNA-1
chr3_2	CDS	43149181	43149309	43149181	ID=Msa0406440-mRNA-1:cds;Parent=Msa0406440-mRNA-1
chr3_2	CDS	43149562	43149630	43149562	ID=Msa0406440-mRNA-1:cds;Parent=Msa0406440-mRNA-1

Gene Sequence	>Msa0406440 TGCCATAGTTCTGATGCACACCCATCAAAGAATGGCGAGTTGCATACTCTTTGTCAGGCCGTTTTTGATGATATCCCCTCCAACACTAAACATAATGATATTATGGTGAAACTGCTGAACGTTTTAAAGCATGCATCTCAATGTCGTGCAGCTAATGCTGAATCTTGCTCTCATCCAAACTGTTCTCAAATCAAGAAGCTGTTCTCTCATGCCAGTAGGTGCGAAATTCTAGGATCTAAAGAAGCATGTATAATCGAAAGCATTGCAGTTTTTGAAAGTGACAAAGCAGTCGTTGGTCAA
Protein sequence	>Msa0406440 CHSSDAHPSKNGELHTLCQAVFDDIPSNTKHNDIMVKLLNVLKHASQCRAANAESCSHPNCSQIKKLFSHASRCEILGSKEACIIESIAVFESDKAVVGQ