AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0406760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0406760 MtrunA17_Chr3g0144341 93.091 275 10 3 1 272 1 269 2.15e-175 488
Msa0406760 MtrunA17_Chr5g0407561 50.189 265 97 6 24 261 232 488 2.06e-74 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0406760 AT1G76510.2 71.282 195 52 4 67 260 132 323 1.10e-83 258
Msa0406760 AT1G76510.4 71.282 195 52 4 67 260 132 323 1.10e-83 258
Msa0406760 AT1G76510.1 71.282 195 52 4 67 260 132 323 1.10e-83 258
Msa0406760 AT1G76510.3 64.789 213 48 5 72 260 137 346 1.57e-77 244
Msa0406760 AT1G20910.2 64.251 207 71 3 67 273 96 299 8.80e-77 239
Msa0406760 AT1G20910.1 64.251 207 71 3 67 273 96 299 1.19e-76 239
Msa0406760 AT2G17410.1 61.957 184 64 2 72 254 489 667 6.06e-66 219
Msa0406760 AT2G17410.3 61.957 184 64 2 72 254 489 667 6.06e-66 219
Msa0406760 AT2G17410.2 61.957 184 64 2 72 254 489 667 7.57e-66 219

Find 107 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACTCAGAATGGATAAT+TGG 0.172616 3_2:-43537525 None:intergenic
TTGGCATGCTCAGCGCCTTA+TGG 0.294765 3_2:+43542410 Msa0406760:CDS
GAAAAGCATAAGAGAGAGAT+TGG 0.315271 3_2:+43541388 Msa0406760:CDS
TCTTCTTTCTCTCTCTTTCT+CGG 0.315272 3_2:-43537389 None:intergenic
TTTGTAGACCGCTGTTTATC+AGG 0.316112 3_2:+43542335 Msa0406760:intron
CAATGGGACTTGATAAAACT+TGG 0.325300 3_2:-43539869 None:intergenic
GTCCTTGGAGACTGCTCTTA+AGG 0.330004 3_2:+43543076 Msa0406760:three_prime_UTR
CCCCTGTCCATATGTTATTC+AGG 0.331272 3_2:+43543054 Msa0406760:three_prime_UTR
TCTGTAACGTTCTTAACTTT+AGG 0.348861 3_2:-43539632 None:intergenic
ACGTTCTTAACTTTAGGTTT+TGG 0.366210 3_2:-43539626 None:intergenic
CTTCTTTCTCTCTCTTTCTC+GGG 0.372161 3_2:-43537388 None:intergenic
TGGCATGCTCAGCGCCTTAT+GGG 0.389962 3_2:+43542411 Msa0406760:CDS
TGTGTGACGAATTGTTTGTT+TGG 0.394982 3_2:-43537474 None:intergenic
TTTCCACACTCGATGGTTGA+TGG 0.396113 3_2:-43541438 None:intergenic
GAGACAGGCAGTTAAGTTAC+TGG 0.400210 3_2:+43542762 Msa0406760:CDS
AGGTAGGGCGCGGAGGGATG+CGG 0.401043 3_2:+43542368 Msa0406760:CDS
AAATAAAAGATAGTAGTAGA+TGG 0.402080 3_2:-43542841 None:intergenic
ATCAATGGAGGGTCATGAAA+TGG 0.404745 3_2:+43539475 Msa0406760:exon
GGGGCAGTACCAATGGGTGG+GGG 0.405768 3_2:-43543035 None:intergenic
GGTTCCTGAGTCAGCTGTTA+AGG 0.416729 3_2:+43542443 Msa0406760:CDS
GGGCAGTACCAATGGGTGGG+GGG 0.417370 3_2:-43543034 None:intergenic
ATGCTCGAGCTCTTTCATAA+AGG 0.418085 3_2:-43539812 None:intergenic
CCATATGTTATTCAGGTCCT+TGG 0.421166 3_2:+43543061 Msa0406760:three_prime_UTR
AACGAAACTTGTTATAATGA+AGG 0.421553 3_2:-43542890 None:intergenic
CTCCGCGCCCTACCTGAGCC+TGG 0.423147 3_2:-43542360 None:intergenic
GTTTATCAGGCTCCAGGCTC+AGG 0.427487 3_2:+43542348 Msa0406760:CDS
AAAACTCAGAATGGATAATT+GGG 0.438599 3_2:-43537524 None:intergenic
AAAAGCATAAGAGAGAGATT+GGG 0.443286 3_2:+43541389 Msa0406760:CDS
GACAGAGCTGCAAACATAGA+AGG 0.444672 3_2:+43542740 Msa0406760:CDS
GTGTGACGAATTGTTTGTTT+GGG 0.458908 3_2:-43537473 None:intergenic
TGATGAAGCCGGTACGCCTA+TGG 0.462210 3_2:+43539780 Msa0406760:CDS
ATTTATATCTGTTTCACTGT+TGG 0.463626 3_2:+43542813 Msa0406760:three_prime_UTR
AGGCTCAGGTAGGGCGCGGA+GGG 0.464479 3_2:+43542362 Msa0406760:CDS
CTGCACGTGCAATGCAAGGT+TGG 0.470880 3_2:+43542391 Msa0406760:CDS
CCAAGGACCTGAATAACATA+TGG 0.472367 3_2:-43543061 None:intergenic
AAATAGTAAGGGAGGAAAGA+TGG 0.476177 3_2:-43543110 None:intergenic
TTTCTACAGATCGAGGTCCT+TGG 0.482284 3_2:+43539834 Msa0406760:CDS
ACAGGGGCAGTACCAATGGG+TGG 0.482543 3_2:-43543038 None:intergenic
GACCTGAATAACATATGGAC+AGG 0.491919 3_2:-43543056 None:intergenic
AGGGGCAGTACCAATGGGTG+GGG 0.492528 3_2:-43543036 None:intergenic
CTCCAGGCTCAGGTAGGGCG+CGG 0.493114 3_2:+43542358 Msa0406760:CDS
ACATACTTGAGGCAATTCAA+TGG 0.496631 3_2:-43539886 None:intergenic
GAACCTCGCCGTATCCCATA+AGG 0.497226 3_2:-43542425 None:intergenic
ACAAAGAACACCGTCTGGTA+TGG 0.499407 3_2:+43542715 Msa0406760:CDS
ATAAAGGCTTCTCGCTCCAT+AGG 0.502198 3_2:-43539796 None:intergenic
CAGGCTCAGGTAGGGCGCGG+AGG 0.503793 3_2:+43542361 Msa0406760:CDS
ATGGACAGGGGCAGTACCAA+TGG 0.506394 3_2:-43543042 None:intergenic
TTGTTCAAGTTGAGGAGTGA+GGG 0.508455 3_2:-43539591 None:intergenic
ACCGCTGTTTATCAGGCTCC+AGG 0.511245 3_2:+43542342 Msa0406760:CDS
AAAGCATAAGAGAGAGATTG+GGG 0.512312 3_2:+43541390 Msa0406760:CDS
AAGAGTGAGCCGTGGAGAGG+TGG 0.512363 3_2:+43537408 Msa0406760:five_prime_UTR
AACAAACAAAGAACACCGTC+TGG 0.512461 3_2:+43542710 Msa0406760:CDS
GAAGTCAATAATAACAATGC+TGG 0.518567 3_2:+43539653 Msa0406760:CDS
ACGAAACTTGTTATAATGAA+GGG 0.526818 3_2:-43542889 None:intergenic
TGGACAGGGGCAGTACCAAT+GGG 0.527551 3_2:-43543041 None:intergenic
GATTCAATGAAAACTCAGAA+TGG 0.527879 3_2:-43537533 None:intergenic
CATACTTGAGGCAATTCAAT+GGG 0.529182 3_2:-43539885 None:intergenic
CTGCAAACATAGAAGGAGAC+AGG 0.533192 3_2:+43542747 Msa0406760:CDS
TGTTGTTGTTGTTCAAGTTG+AGG 0.536049 3_2:-43539599 None:intergenic
CAGGGGCAGTACCAATGGGT+GGG 0.540306 3_2:-43543037 None:intergenic
CTTACTCAGACAGAAATCAA+TGG 0.545998 3_2:+43539460 Msa0406760:intron
TTCTCGCTCCATAGGCGTAC+CGG 0.546405 3_2:-43539788 None:intergenic
TCGAAGTTGTGGCGGTCAGT+AGG 0.553786 3_2:+43540730 Msa0406760:CDS
GCGGCTGCACGTGCAATGCA+AGG 0.557817 3_2:+43542387 Msa0406760:CDS
GCTCAGCGCCTTATGGGATA+CGG 0.558831 3_2:+43542417 Msa0406760:CDS
GGACTTGCACTACAGTCTCA+TGG 0.558888 3_2:+43541004 Msa0406760:intron
TATAATGAAGGGAACTCACA+TGG 0.565336 3_2:-43542878 None:intergenic
GGGGATGCACAAAATCGCTC+TGG 0.568502 3_2:-43543015 None:intergenic
AATGGGACTTGATAAAACTT+GGG 0.574691 3_2:-43539868 None:intergenic
GGTTGATGGAGTGATCCGAC+GGG 0.577054 3_2:-43541424 None:intergenic
GTTGTTCAAGTTGAGGAGTG+AGG 0.579571 3_2:-43539592 None:intergenic
AGGTAACTGCATCGAAGTTG+TGG 0.585142 3_2:+43540719 Msa0406760:intron
TGGAGAGCTGTTATCAGACT+AGG 0.587815 3_2:+43540238 Msa0406760:CDS
TCAGGCTCCAGGCTCAGGTA+GGG 0.588503 3_2:+43542353 Msa0406760:CDS
ATATCTAGTCCTTACTTGGG+AGG 0.589671 3_2:-43540766 None:intergenic
CTTGGGAGGCTTGAATTCCA+AGG 0.591311 3_2:-43539851 None:intergenic
AAGAAGAGTGAGCCGTGGAG+AGG 0.592568 3_2:+43537405 Msa0406760:five_prime_UTR
AGAGAAAGAAGAGTGAGCCG+TGG 0.593631 3_2:+43537400 Msa0406760:five_prime_UTR
AACCTTAAGAGCAGTCTCCA+AGG 0.593819 3_2:-43543078 None:intergenic
CTAGTCCTTACTTGGGAGGG+TGG 0.595303 3_2:-43540762 None:intergenic
CAATAATAACAATGCTGGCG+AGG 0.595839 3_2:+43539658 Msa0406760:CDS
ATAATGAAGGGAACTCACAT+GGG 0.597830 3_2:-43542877 None:intergenic
ATCAGGCTCCAGGCTCAGGT+AGG 0.598841 3_2:+43542352 Msa0406760:CDS
ATGGCTGCTTATGATGAAGC+CGG 0.600910 3_2:+43539769 Msa0406760:CDS
TGGTTGATGGAGTGATCCGA+CGG 0.606756 3_2:-43541425 None:intergenic
TATCTAGTCCTTACTTGGGA+GGG 0.608180 3_2:-43540765 None:intergenic
ACTCCATCAACCATCGAGTG+TGG 0.608784 3_2:+43541435 Msa0406760:CDS
CAGACCTTAACAGCTGACTC+AGG 0.614584 3_2:-43542447 None:intergenic
ATTCTCGCGCATTCTCAACA+AGG 0.619113 3_2:+43537651 Msa0406760:five_prime_UTR
GGGACTTGATAAAACTTGGG+AGG 0.626061 3_2:-43539865 None:intergenic
ACCTGAATAACATATGGACA+GGG 0.631107 3_2:-43543055 None:intergenic
CTCAGACAGAAATCAATGGA+GGG 0.633845 3_2:+43539464 Msa0406760:intron
TCAGCAGCTCCACCTCTCCA+CGG 0.636350 3_2:-43537417 None:intergenic
CAGACTAGGTGGCTATGAAG+TGG 0.636788 3_2:+43540252 Msa0406760:CDS
ACTCAGACAGAAATCAATGG+AGG 0.640060 3_2:+43539463 Msa0406760:intron
TAATGAAGGGAACTCACATG+GGG 0.650398 3_2:-43542876 None:intergenic
TCGAGCATTTCTACAGATCG+AGG 0.659811 3_2:+43539827 Msa0406760:CDS
GGGGAGTTACAGCTCCCCGT+CGG 0.668666 3_2:+43541409 Msa0406760:CDS
GCGCCTTATGGGATACGGCG+AGG 0.677937 3_2:+43542422 Msa0406760:CDS
TAACTGCATCGAAGTTGTGG+CGG 0.684336 3_2:+43540722 Msa0406760:CDS
GCTCTGTCATCCATACCAGA+CGG 0.693775 3_2:-43542725 None:intergenic
GAGAATTAATTAGAGTAACG+CGG 0.696958 3_2:-43537591 None:intergenic
GCCTGGAGCCTGATAAACAG+CGG 0.707020 3_2:-43542343 None:intergenic
AGAGCTGTTATCAGACTAGG+TGG 0.717567 3_2:+43540241 Msa0406760:CDS
CCTGAATAACATATGGACAG+GGG 0.727759 3_2:-43543054 None:intergenic
GTTGATGGAGTGATCCGACG+GGG 0.734614 3_2:-43541423 None:intergenic
AATGAAGGGAACTCACATGG+GGG 0.792842 3_2:-43542875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAAGTATAACTTTAT+AGG + chr3_2:43538704-43538723 Msa0406760:intron 10.0%
!! GAAATATTATAGAAAATATT+TGG + chr3_2:43538881-43538900 Msa0406760:intron 10.0%
!!! GATTATATTTTCAATATTTT+TGG + chr3_2:43538903-43538922 Msa0406760:intron 10.0%
!! AAGTATTATTAAAATGAAAA+TGG - chr3_2:43540647-43540666 None:intergenic 10.0%
!!! TAATTCTTTATTTTATTTTG+CGG - chr3_2:43542994-43543013 None:intergenic 10.0%
!!! TGTTTTTCTCTTAATTAAAT+AGG - chr3_2:43537847-43537866 None:intergenic 15.0%
!!! TGTTTTTCTCTTAATTAAAT+AGG - chr3_2:43537847-43537866 None:intergenic 15.0%
!! TGTTTATCTCTTAATTAAAT+AGG - chr3_2:43538251-43538270 None:intergenic 15.0%
!!! TGTTTTTCTCTTAATTAAAT+AGG - chr3_2:43537847-43537866 None:intergenic 15.0%
!! CTTATATATAAAAGTTAATC+CGG + chr3_2:43538422-43538441 Msa0406760:intron 15.0%
!! TTATATATAAAAGTTAATCC+GGG + chr3_2:43538423-43538442 Msa0406760:intron 15.0%
!! TGTTTATCTCTTAATTAAAT+AGG - chr3_2:43538251-43538270 None:intergenic 15.0%
!! GAATAAAATTACTTATTGAA+AGG - chr3_2:43538678-43538697 None:intergenic 15.0%
!!! TATGATTATGATATGATTTT+AGG - chr3_2:43538764-43538783 None:intergenic 15.0%
!! TAAAAAATAAATTACAGACA+AGG + chr3_2:43539250-43539269 Msa0406760:intron 15.0%
!! TAAAAATGTATTCAAAAGAA+TGG - chr3_2:43539730-43539749 None:intergenic 15.0%
!!! TTTTATATAATACATACTTG+AGG - chr3_2:43539900-43539919 None:intergenic 15.0%
!!! CATTTGTTATTAAATATTAG+AGG + chr3_2:43541918-43541937 Msa0406760:intron 15.0%
!! CTTATATATAAAAGTTAACC+CGG + chr3_2:43537758-43537777 Msa0406760:intron 20.0%
!! TTATATATAAAAGTTAACCC+GGG + chr3_2:43537759-43537778 Msa0406760:intron 20.0%
!!! TAGGTTTTAGGTTAAAATTA+GGG - chr3_2:43537797-43537816 None:intergenic 20.0%
!!! TTAGGTTTTAGGTTAAAATT+AGG - chr3_2:43537798-43537817 None:intergenic 20.0%
!!! TAATTTTTAGCTTAGGTTTT+AGG - chr3_2:43537809-43537828 None:intergenic 20.0%
!!! AATACAGTAATTTTTAGCTT+AGG - chr3_2:43537816-43537835 None:intergenic 20.0%
!! CTTATATATAAAAGTTAACC+CGG + chr3_2:43537758-43537777 Msa0406760:intron 20.0%
!! TTATATATAAAAGTTAACCC+GGG + chr3_2:43537759-43537778 Msa0406760:intron 20.0%
!!! TAGGTTTTAGGTTAAAATTA+GGG - chr3_2:43537797-43537816 None:intergenic 20.0%
!!! TTAGGTTTTAGGTTAAAATT+AGG - chr3_2:43537798-43537817 None:intergenic 20.0%
!! CTTATATATAAAAGTTAACC+CGG + chr3_2:43537758-43537777 Msa0406760:intron 20.0%
!! TTATATATAAAAGTTAACCC+GGG + chr3_2:43537759-43537778 Msa0406760:intron 20.0%
!!! TAGGTTTTAGGTTAAAATTA+GGG - chr3_2:43537797-43537816 None:intergenic 20.0%
!!! TTAGGTTTTAGGTTAAAATT+AGG - chr3_2:43537798-43537817 None:intergenic 20.0%
!!! TAATTTTTAGCTTAGGTTTT+AGG - chr3_2:43537809-43537828 None:intergenic 20.0%
!!! AATACAGTAATTTTTAGCTT+AGG - chr3_2:43537816-43537835 None:intergenic 20.0%
!! CTTATATATAAAAGTTAACC+CGG + chr3_2:43537758-43537777 Msa0406760:intron 20.0%
!! TTATATATAAAAGTTAACCC+GGG + chr3_2:43537759-43537778 Msa0406760:intron 20.0%
!!! TAGGTTTTAGGTTAAAATTA+GGG - chr3_2:43537797-43537816 None:intergenic 20.0%
!!! TTAGGTTTTAGGTTAAAATT+AGG - chr3_2:43537798-43537817 None:intergenic 20.0%
!! CTTATATATAAAAGTTAACC+CGG + chr3_2:43537758-43537777 Msa0406760:intron 20.0%
!! TTATATATAAAAGTTAACCC+GGG + chr3_2:43537759-43537778 Msa0406760:intron 20.0%
!!! TAGGTTTTAGGTTAAAATTA+GGG - chr3_2:43537797-43537816 None:intergenic 20.0%
!!! TTAGGTTTTAGGTTAAAATT+AGG - chr3_2:43537798-43537817 None:intergenic 20.0%
!!! AATACAATAATTGTTAGCTT+AGG - chr3_2:43538220-43538239 None:intergenic 20.0%
!! CTTATATATAAAAGTTAACC+CGG + chr3_2:43537758-43537777 Msa0406760:intron 20.0%
!! TTATATATAAAAGTTAACCC+GGG + chr3_2:43537759-43537778 Msa0406760:intron 20.0%
!!! TAGGTTTTAGGTTAAAATTA+GGG - chr3_2:43537797-43537816 None:intergenic 20.0%
!!! TTAGGTTTTAGGTTAAAATT+AGG - chr3_2:43537798-43537817 None:intergenic 20.0%
!!! TAATTTTTAGCTTAGGTTTT+AGG - chr3_2:43537809-43537828 None:intergenic 20.0%
!!! AATACAGTAATTTTTAGCTT+AGG - chr3_2:43537816-43537835 None:intergenic 20.0%
!!! TAGGTTTTAGGTTAAAATTA+GGG - chr3_2:43537797-43537816 None:intergenic 20.0%
!!! TTAGGTTTTAGGTTAAAATT+AGG - chr3_2:43537798-43537817 None:intergenic 20.0%
!!! CAACAGTAAATTACTTTTTA+AGG - chr3_2:43538619-43538638 None:intergenic 20.0%
!! TCATAATATTATAATTGCTG+TGG + chr3_2:43538779-43538798 Msa0406760:intron 20.0%
!! ACATTAATATCATGTTACAA+AGG - chr3_2:43538841-43538860 None:intergenic 20.0%
!! TTGTAACATGATATTAATGT+TGG + chr3_2:43538841-43538860 Msa0406760:intron 20.0%
!! CTATAAAATGCAAAAAACTA+CGG - chr3_2:43540332-43540351 None:intergenic 20.0%
!!! TCATTATATTCTAGTTTGTT+TGG + chr3_2:43540551-43540570 Msa0406760:intron 20.0%
!!! ATTTAGTTCTCTTATGTTTT+TGG + chr3_2:43540621-43540640 Msa0406760:intron 20.0%
!!! TCAGTTATTTATTTTTGAAC+AGG - chr3_2:43540678-43540697 None:intergenic 20.0%
!!! ATAACAAGTTTTTCATTTCT+AGG - chr3_2:43542004-43542023 None:intergenic 20.0%
!! GAAAAGAACCTAAAAAATAT+CGG + chr3_2:43542603-43542622 Msa0406760:CDS 20.0%
!! AAATAAAAGATAGTAGTAGA+TGG - chr3_2:43542844-43542863 None:intergenic 20.0%
! AAAACTCAGAATGGATAATT+GGG - chr3_2:43537527-43537546 None:intergenic 25.0%
! TCTCTTAATTAAATAGGTCA+GGG - chr3_2:43537841-43537860 None:intergenic 25.0%
! TTCTCTTAATTAAATAGGTC+AGG - chr3_2:43537842-43537861 None:intergenic 25.0%
!! TATAAGAAGATTGTTAGCTT+AGG - chr3_2:43537946-43537965 None:intergenic 25.0%
! TCTCTTAATTAAATAGGTCA+GGG - chr3_2:43537841-43537860 None:intergenic 25.0%
! TTCTCTTAATTAAATAGGTC+AGG - chr3_2:43537842-43537861 None:intergenic 25.0%
!! TATAAGAAGATTGTTAGCTT+AGG - chr3_2:43537946-43537965 None:intergenic 25.0%
!!! TAATTGTTAGCTTAGGTTTT+AGG - chr3_2:43538213-43538232 None:intergenic 25.0%
! TCTCTTAATTAAATAGGTCA+GGG - chr3_2:43537841-43537860 None:intergenic 25.0%
! ATCTCTTAATTAAATAGGTC+AGG - chr3_2:43538246-43538265 None:intergenic 25.0%
! TCTCTTAATTAAATAGGTCA+GGG - chr3_2:43537841-43537860 None:intergenic 25.0%
! TTCTCTTAATTAAATAGGTC+AGG - chr3_2:43537842-43537861 None:intergenic 25.0%
!!! TAATTGTTAGCTTAGGTTTT+AGG - chr3_2:43538213-43538232 None:intergenic 25.0%
!! AATACAGTAATTGTTAGCTT+AGG - chr3_2:43538480-43538499 None:intergenic 25.0%
! TCTCTTAATTAAATAGGTCA+GGG - chr3_2:43537841-43537860 None:intergenic 25.0%
! ATCTCTTAATTAAATAGGTC+AGG - chr3_2:43538246-43538265 None:intergenic 25.0%
!! ATAAACATAGCAAGAAGTAT+TGG + chr3_2:43538524-43538543 Msa0406760:intron 25.0%
!! CTTGAAATGTTTAGAATGAT+CGG - chr3_2:43538568-43538587 None:intergenic 25.0%
!!! CTTTTTCATGAAAAAATCAC+TGG - chr3_2:43538992-43539011 None:intergenic 25.0%
!! TTTCATGAAAAAGAGTTTTG+TGG + chr3_2:43538999-43539018 Msa0406760:intron 25.0%
! TCAATAATAGACATATCATC+CGG + chr3_2:43539051-43539070 Msa0406760:intron 25.0%
!!! TCGTTAGTTTGGTTTATTTT+TGG + chr3_2:43539112-43539131 Msa0406760:intron 25.0%
! GATAGTTCCTCTAAATTAAT+TGG - chr3_2:43539142-43539161 None:intergenic 25.0%
! TTGTTATCTTATTATGCAGA+TGG + chr3_2:43539750-43539769 Msa0406760:intron 25.0%
! ACTGTAACAAACAATTTGAA+GGG - chr3_2:43539924-43539943 None:intergenic 25.0%
! TACTGTAACAAACAATTTGA+AGG - chr3_2:43539925-43539944 None:intergenic 25.0%
! GCTAAATGCTGAATATATAA+GGG + chr3_2:43540023-43540042 Msa0406760:intron 25.0%
! TTCAAAACTAGTATACGTTA+CGG - chr3_2:43540151-43540170 None:intergenic 25.0%
!! TCATTTAGTGCTATATGTTT+TGG + chr3_2:43540591-43540610 Msa0406760:intron 25.0%
!! CATTTAGTGCTATATGTTTT+GGG + chr3_2:43540592-43540611 Msa0406760:intron 25.0%
! AATATTCACCGAATATATGT+AGG + chr3_2:43540699-43540718 Msa0406760:intron 25.0%
! AATATATCTAGTCCTTACTT+GGG - chr3_2:43540772-43540791 None:intergenic 25.0%
! TAATATATCTAGTCCTTACT+TGG - chr3_2:43540773-43540792 None:intergenic 25.0%
!!! GTTTAGAATCTTTTATGAGA+AGG + chr3_2:43541029-43541048 Msa0406760:CDS 25.0%
! CATGTAATAACAGAAAATCT+TGG - chr3_2:43541238-43541257 None:intergenic 25.0%
! ATCTATCTATCTATCTATCA+AGG - chr3_2:43541829-43541848 None:intergenic 25.0%
!!! AAACTTATGAGCCATTTTTT+GGG - chr3_2:43541868-43541887 None:intergenic 25.0%
!!! AAAACTTATGAGCCATTTTT+TGG - chr3_2:43541869-43541888 None:intergenic 25.0%
!!! ATACTGACTTTAAGAAACAA+AGG + chr3_2:43542130-43542149 Msa0406760:intron 25.0%
! ACAACAAATGACAATAAGAA+GGG - chr3_2:43542496-43542515 None:intergenic 25.0%
!!! CATTTGTTGTGTTTATACAT+TGG + chr3_2:43542506-43542525 Msa0406760:intron 25.0%
! TTATGATGCAAGTAAGTTAT+AGG - chr3_2:43542657-43542676 None:intergenic 25.0%
! ATTTATATCTGTTTCACTGT+TGG + chr3_2:43542813-43542832 Msa0406760:three_prime_UTR 25.0%
!!! ACGAAACTTGTTATAATGAA+GGG - chr3_2:43542892-43542911 None:intergenic 25.0%
!!! AACGAAACTTGTTATAATGA+AGG - chr3_2:43542893-43542912 None:intergenic 25.0%
GAAAACTCAGAATGGATAAT+TGG - chr3_2:43537528-43537547 None:intergenic 30.0%
GATTCAATGAAAACTCAGAA+TGG - chr3_2:43537536-43537555 None:intergenic 30.0%
GAGAATTAATTAGAGTAACG+CGG - chr3_2:43537594-43537613 None:intergenic 30.0%
CTCTTAATTAAATAGGTCAG+GGG - chr3_2:43537840-43537859 None:intergenic 30.0%
!! AGATTGTTAGCTTAGGTTTT+AGG - chr3_2:43537939-43537958 None:intergenic 30.0%
CTCTTAATTAAATAGGTCAG+GGG - chr3_2:43537840-43537859 None:intergenic 30.0%
!! AGATTGTTAGCTTAGGTTTT+AGG - chr3_2:43537939-43537958 None:intergenic 30.0%
CTCTTAATTAAATAGGTCAG+GGG - chr3_2:43537840-43537859 None:intergenic 30.0%
CTCTTAATTAAATAGGTCAG+GGG - chr3_2:43537840-43537859 None:intergenic 30.0%
CTCTTAATTAAATAGGTCAG+GGG - chr3_2:43537840-43537859 None:intergenic 30.0%
TGTTAGAGACTTAGAGTTAA+TGG + chr3_2:43538637-43538656 Msa0406760:intron 30.0%
CTTAGAGTTAATGGCAAAAT+AGG + chr3_2:43538646-43538665 Msa0406760:intron 30.0%
! ATTAATGTTGGTGTTTCGAA+AGG + chr3_2:43538853-43538872 Msa0406760:intron 30.0%
!! ATGAAAAAGAGTTTTGTGGT+TGG + chr3_2:43539003-43539022 Msa0406760:intron 30.0%
!! TGAAAAAGAGTTTTGTGGTT+GGG + chr3_2:43539004-43539023 Msa0406760:intron 30.0%
!!! GTTTGATCTTTTAAGATCTC+CGG - chr3_2:43539073-43539092 None:intergenic 30.0%
ACTTAACTTCTTCGTTAGTT+TGG + chr3_2:43539101-43539120 Msa0406760:intron 30.0%
TAAATTATATATGACCCGTG+CGG + chr3_2:43539383-43539402 Msa0406760:intron 30.0%
!! AGTAAGTAGGGTTTTGTAAA+GGG - chr3_2:43539446-43539465 None:intergenic 30.0%
!! ACGTTCTTAACTTTAGGTTT+TGG - chr3_2:43539629-43539648 None:intergenic 30.0%
TCTGTAACGTTCTTAACTTT+AGG - chr3_2:43539635-43539654 None:intergenic 30.0%
GAAGTCAATAATAACAATGC+TGG + chr3_2:43539653-43539672 Msa0406760:CDS 30.0%
AATGGGACTTGATAAAACTT+GGG - chr3_2:43539871-43539890 None:intergenic 30.0%
TGAAAATACTTGCGAGAAAA+AGG - chr3_2:43539951-43539970 None:intergenic 30.0%
! TTCTCGCAAGTATTTTCAAA+TGG + chr3_2:43539953-43539972 Msa0406760:intron 30.0%
GGCTAAATGCTGAATATATA+AGG + chr3_2:43540022-43540041 Msa0406760:intron 30.0%
AAATGCTGAATATATAAGGG+AGG + chr3_2:43540026-43540045 Msa0406760:intron 30.0%
ATGAGCAATAATGAAGCAAA+TGG - chr3_2:43540285-43540304 None:intergenic 30.0%
TGCAGTTACCTACATATATT+CGG - chr3_2:43540710-43540729 None:intergenic 30.0%
GTAAGATAATGAACAGCAAA+GGG - chr3_2:43540964-43540983 None:intergenic 30.0%
AGTAAGATAATGAACAGCAA+AGG - chr3_2:43540965-43540984 None:intergenic 30.0%
TGAAAAATCTCAATTTGTGC+AGG + chr3_2:43541351-43541370 Msa0406760:intron 30.0%
! AAAAGCATAAGAGAGAGATT+GGG + chr3_2:43541389-43541408 Msa0406760:CDS 30.0%
ATGAAATCATATAACCAGAG+GGG - chr3_2:43541490-43541509 None:intergenic 30.0%
CATGAAATCATATAACCAGA+GGG - chr3_2:43541491-43541510 None:intergenic 30.0%
ACATGAAATCATATAACCAG+AGG - chr3_2:43541492-43541511 None:intergenic 30.0%
ATGATTTCATGTCTACGTAT+AGG + chr3_2:43541500-43541519 Msa0406760:intron 30.0%
GTTATACTCATATCTTGCAT+TGG + chr3_2:43541583-43541602 Msa0406760:intron 30.0%
! TTTTCTTTAGCACAGTTAAG+CGG + chr3_2:43541740-43541759 Msa0406760:intron 30.0%
GAAAAGATAAGGAACTGAAT+GGG + chr3_2:43541762-43541781 Msa0406760:intron 30.0%
!! ATGGGTTTTTGTTTATGATC+AGG + chr3_2:43541780-43541799 Msa0406760:intron 30.0%
!! TGGGTTTTTGTTTATGATCA+GGG + chr3_2:43541781-43541800 Msa0406760:intron 30.0%
! TTTCATTTCTAGGTATTCGT+TGG - chr3_2:43541994-43542013 None:intergenic 30.0%
!! GTTTCTTTGAAACTGACAAT+TGG + chr3_2:43542039-43542058 Msa0406760:intron 30.0%
! GACTTTAAGAAACAAAGGAA+AGG + chr3_2:43542135-43542154 Msa0406760:intron 30.0%
CAACAAATGACAATAAGAAG+GGG - chr3_2:43542495-43542514 None:intergenic 30.0%
CACAACAAATGACAATAAGA+AGG - chr3_2:43542497-43542516 None:intergenic 30.0%
!! TTTAGGTTCTTTTCACGTTT+TGG - chr3_2:43542597-43542616 None:intergenic 30.0%
!!! TGAGCATACCGATATTTTTT+AGG - chr3_2:43542614-43542633 None:intergenic 30.0%
!! TGAGTGCTGATACTCAAAAA+CGG + chr3_2:43537437-43537456 Msa0406760:five_prime_UTR 35.0%
GTGTGACGAATTGTTTGTTT+GGG - chr3_2:43537476-43537495 None:intergenic 35.0%
TGTGTGACGAATTGTTTGTT+TGG - chr3_2:43537477-43537496 None:intergenic 35.0%
TTAGGGCTAAAATAATCACC+CGG - chr3_2:43537780-43537799 None:intergenic 35.0%
TTAGGGCTAAAATAATCACC+CGG - chr3_2:43537780-43537799 None:intergenic 35.0%
TTAGGGCTAAAATAATCACC+CGG - chr3_2:43537780-43537799 None:intergenic 35.0%
TTAGGGCTAAAATAATCACC+CGG - chr3_2:43537780-43537799 None:intergenic 35.0%
TTAGGGCTAAAATAATCACC+CGG - chr3_2:43537780-43537799 None:intergenic 35.0%
TTAGGGCTAAAATAATCACC+CGG - chr3_2:43537780-43537799 None:intergenic 35.0%
TTAGGGCTAAAATAATCACC+CGG - chr3_2:43537780-43537799 None:intergenic 35.0%
!! CTTTTTAAGGACTATCTCAG+AGG - chr3_2:43538606-43538625 None:intergenic 35.0%
TACAAAGGTTAGATGACGAT+AGG - chr3_2:43538826-43538845 None:intergenic 35.0%
TAGTGTATCTATAGCCAACA+TGG + chr3_2:43538935-43538954 Msa0406760:intron 35.0%
TGGTGCACCAATTAATTTAG+AGG + chr3_2:43539132-43539151 Msa0406760:intron 35.0%
TACTCATGAGTTCTTTGACA+TGG + chr3_2:43539310-43539329 Msa0406760:intron 35.0%
!! GAGTAAGTAGGGTTTTGTAA+AGG - chr3_2:43539447-43539466 None:intergenic 35.0%
GATTTCTGTCTGAGTAAGTA+GGG - chr3_2:43539458-43539477 None:intergenic 35.0%
TGATTTCTGTCTGAGTAAGT+AGG - chr3_2:43539459-43539478 None:intergenic 35.0%
CTTACTCAGACAGAAATCAA+TGG + chr3_2:43539460-43539479 Msa0406760:intron 35.0%
!! TGTTGTTGTTGTTCAAGTTG+AGG - chr3_2:43539602-43539621 None:intergenic 35.0%
CAATGGGACTTGATAAAACT+TGG - chr3_2:43539872-43539891 None:intergenic 35.0%
CATACTTGAGGCAATTCAAT+GGG - chr3_2:43539888-43539907 None:intergenic 35.0%
ACATACTTGAGGCAATTCAA+TGG - chr3_2:43539889-43539908 None:intergenic 35.0%
TAACTGTTCTGATCTGATAG+CGG + chr3_2:43540185-43540204 Msa0406760:intron 35.0%
ATGCAAAAAACTACGGTGAT+GGG - chr3_2:43540325-43540344 None:intergenic 35.0%
AATGCAAAAAACTACGGTGA+TGG - chr3_2:43540326-43540345 None:intergenic 35.0%
!! ATATAACTTTAGGGCAACAC+AGG - chr3_2:43540454-43540473 None:intergenic 35.0%
GTGCTCATAACTAGTTGTTA+TGG + chr3_2:43540877-43540896 Msa0406760:intron 35.0%
AGTCACACTTGAAATAGTAC+AGG - chr3_2:43541270-43541289 None:intergenic 35.0%
! TTTTCAGACATCAGACACAA+AGG - chr3_2:43541337-43541356 None:intergenic 35.0%
! GAAAAGCATAAGAGAGAGAT+TGG + chr3_2:43541388-43541407 Msa0406760:CDS 35.0%
AAAGCATAAGAGAGAGATTG+GGG + chr3_2:43541390-43541409 Msa0406760:CDS 35.0%
TGAAATCATATAACCAGAGG+GGG - chr3_2:43541489-43541508 None:intergenic 35.0%
! TATTTTCCTTTGTCGTGGAA+TGG + chr3_2:43541547-43541566 Msa0406760:intron 35.0%
! ATTTTCCTTTGTCGTGGAAT+GGG + chr3_2:43541548-43541567 Msa0406760:intron 35.0%
GCAAAAACTCTTCACATTAC+TGG + chr3_2:43541627-43541646 Msa0406760:intron 35.0%
ACAGTTAAGCGGAAAAGATA+AGG + chr3_2:43541751-43541770 Msa0406760:intron 35.0%
GGAAAAGATAAGGAACTGAA+TGG + chr3_2:43541761-43541780 Msa0406760:intron 35.0%
AGAAACAGAAGCCCAAAAAA+TGG + chr3_2:43541854-43541873 Msa0406760:intron 35.0%
TGAACTTTCATGTGTACTAG+AGG + chr3_2:43541950-43541969 Msa0406760:intron 35.0%
GAACTTTCATGTGTACTAGA+GGG + chr3_2:43541951-43541970 Msa0406760:intron 35.0%
CTGTGCAAGAAAATACAAAG+AGG - chr3_2:43542553-43542572 None:intergenic 35.0%
! CTCTTTGTATTTTCTTGCAC+AGG + chr3_2:43542551-43542570 Msa0406760:intron 35.0%
!! TTCTTTTCACGTTTTGGTGT+GGG - chr3_2:43542591-43542610 None:intergenic 35.0%
CTTCGTTGCTTCAATGAATT+AGG + chr3_2:43542680-43542699 Msa0406760:intron 35.0%
ATAATGAAGGGAACTCACAT+GGG - chr3_2:43542880-43542899 None:intergenic 35.0%
TATAATGAAGGGAACTCACA+TGG - chr3_2:43542881-43542900 None:intergenic 35.0%
ACCTGAATAACATATGGACA+GGG - chr3_2:43543058-43543077 None:intergenic 35.0%
ATGAGAAAGAGAAACGACGA+CGG - chr3_2:43537689-43537708 None:intergenic 40.0%
TAGGGCTAAAATAATCACCC+GGG - chr3_2:43537779-43537798 None:intergenic 40.0%
TAGGGCTAAAATAATCACCC+GGG - chr3_2:43537779-43537798 None:intergenic 40.0%
TAGGGCTAAAATAATCACCC+GGG - chr3_2:43537779-43537798 None:intergenic 40.0%
TAGGGCTAAAATAATCACCC+GGG - chr3_2:43537779-43537798 None:intergenic 40.0%
TAGGGCTAAAATAATCACCC+GGG - chr3_2:43537779-43537798 None:intergenic 40.0%
TAGGGCTAAAATAATCACCC+GGG - chr3_2:43537779-43537798 None:intergenic 40.0%
TGGCTAAAGAGCAATCATGT+TGG - chr3_2:43538972-43538991 None:intergenic 40.0%
ACTCAGACAGAAATCAATGG+AGG + chr3_2:43539463-43539482 Msa0406760:intron 40.0%
CTCAGACAGAAATCAATGGA+GGG + chr3_2:43539464-43539483 Msa0406760:intron 40.0%
ATCAATGGAGGGTCATGAAA+TGG + chr3_2:43539475-43539494 Msa0406760:exon 40.0%
!! TTGTTCAAGTTGAGGAGTGA+GGG - chr3_2:43539594-43539613 None:intergenic 40.0%
CAATAATAACAATGCTGGCG+AGG + chr3_2:43539658-43539677 Msa0406760:CDS 40.0%
ATGCTCGAGCTCTTTCATAA+AGG - chr3_2:43539815-43539834 None:intergenic 40.0%
CCTTACGGCATTAGGTATAT+GGG - chr3_2:43540060-43540079 None:intergenic 40.0%
ACCTTACGGCATTAGGTATA+TGG - chr3_2:43540061-43540080 None:intergenic 40.0%
! ACCTAATGCCGTAAGGTTTT+AGG + chr3_2:43540064-43540083 Msa0406760:intron 40.0%
ACCTAAAACCTTACGGCATT+AGG - chr3_2:43540068-43540087 None:intergenic 40.0%
!!! TAATGCCGTAAGGTTTTAGG+TGG + chr3_2:43540067-43540086 Msa0406760:intron 40.0%
CATCTCCACCTAAAACCTTA+CGG - chr3_2:43540075-43540094 None:intergenic 40.0%
!!! TAAGGTTTTAGGTGGAGATG+TGG + chr3_2:43540075-43540094 Msa0406760:intron 40.0%
!!! AAGGTTTTAGGTGGAGATGT+GGG + chr3_2:43540076-43540095 Msa0406760:intron 40.0%
ATACTTCAGAACCACAAGAG+AGG - chr3_2:43540111-43540130 None:intergenic 40.0%
TACGTTACGGAGAGCAATAA+CGG - chr3_2:43540138-43540157 None:intergenic 40.0%
!! CGGACTGCTTATTTTCTCAT+CGG + chr3_2:43540205-43540224 Msa0406760:intron 40.0%
CATTTCCCAATAAGAACGCA+TGG + chr3_2:43540377-43540396 Msa0406760:intron 40.0%
! CAAGTCTTATCACGCTAGAT+GGG - chr3_2:43540509-43540528 None:intergenic 40.0%
TATCTAGTCCTTACTTGGGA+GGG - chr3_2:43540768-43540787 None:intergenic 40.0%
ATATCTAGTCCTTACTTGGG+AGG - chr3_2:43540769-43540788 None:intergenic 40.0%
CTGAATACATTCTCTACCAC+AGG + chr3_2:43540983-43541002 Msa0406760:intron 40.0%
GAGACAATGTGCATCAGTTT+CGG + chr3_2:43541116-43541135 Msa0406760:intron 40.0%
! CATCAGTTTCGGTGTGAATT+TGG + chr3_2:43541127-43541146 Msa0406760:intron 40.0%
AATCCAGAAGTTCTGTCACA+AGG - chr3_2:43541200-43541219 None:intergenic 40.0%
CACAAAGGAAACAGAAGATC+AGG - chr3_2:43541322-43541341 None:intergenic 40.0%
GAAATCATATAACCAGAGGG+GGG - chr3_2:43541488-43541507 None:intergenic 40.0%
! TCCTCTATTTTCCTTTGTCG+TGG + chr3_2:43541542-43541561 Msa0406760:intron 40.0%
TCCACGACAAAGGAAAATAG+AGG - chr3_2:43541546-43541565 None:intergenic 40.0%
! GTGGAATGGGTTTGATTCTT+CGG + chr3_2:43541561-43541580 Msa0406760:intron 40.0%
TGCATTGGAAACAGAAGTTG+AGG + chr3_2:43541598-43541617 Msa0406760:intron 40.0%
CGTTGGCGTTTGTAAAATGT+AGG - chr3_2:43541977-43541996 None:intergenic 40.0%
ATTGGCAACAACATCCAAGT+TGG + chr3_2:43542057-43542076 Msa0406760:intron 40.0%
CCAATGACTTATCTCCAACT+TGG - chr3_2:43542074-43542093 None:intergenic 40.0%
! CCAAGTTGGAGATAAGTCAT+TGG + chr3_2:43542071-43542090 Msa0406760:intron 40.0%
CTGGATATCACATCCATTAC+TGG + chr3_2:43542184-43542203 Msa0406760:intron 40.0%
TTTATCAGCATGGCCAGTAA+TGG - chr3_2:43542200-43542219 None:intergenic 40.0%
CCATGCTGATAAATGCAGAT+GGG + chr3_2:43542207-43542226 Msa0406760:intron 40.0%
TGATAAATGCAGATGGGTGT+GGG + chr3_2:43542213-43542232 Msa0406760:intron 40.0%
CAAGAGGCTTTACAGTTTGA+GGG - chr3_2:43542251-43542270 None:intergenic 40.0%
ACAAGAGGCTTTACAGTTTG+AGG - chr3_2:43542252-43542271 None:intergenic 40.0%
!! CTCCTTGCTTTTCATTTTGC+CGG - chr3_2:43542293-43542312 None:intergenic 40.0%
TTTGTAGACCGCTGTTTATC+AGG + chr3_2:43542335-43542354 Msa0406760:intron 40.0%
!! GTTCTTTTCACGTTTTGGTG+TGG - chr3_2:43542592-43542611 None:intergenic 40.0%
AACAAACAAAGAACACCGTC+TGG + chr3_2:43542710-43542729 Msa0406760:CDS 40.0%
TAATGAAGGGAACTCACATG+GGG - chr3_2:43542879-43542898 None:intergenic 40.0%
CCTGAATAACATATGGACAG+GGG - chr3_2:43543057-43543076 None:intergenic 40.0%
GACCTGAATAACATATGGAC+AGG - chr3_2:43543059-43543078 None:intergenic 40.0%
CCAAGGACCTGAATAACATA+TGG - chr3_2:43543064-43543083 None:intergenic 40.0%
CCATATGTTATTCAGGTCCT+TGG + chr3_2:43543061-43543080 Msa0406760:three_prime_UTR 40.0%
ATTCTCGCGCATTCTCAACA+AGG + chr3_2:43537651-43537670 Msa0406760:five_prime_UTR 45.0%
! GTTGGTGTTTCGAAAGGCAA+TGG + chr3_2:43538859-43538878 Msa0406760:intron 45.0%
ATTTCACCTGCTCGACAACA+TGG + chr3_2:43539201-43539220 Msa0406760:intron 45.0%
TTTCACCTGCTCGACAACAT+GGG + chr3_2:43539202-43539221 Msa0406760:intron 45.0%
!! GTTGTTCAAGTTGAGGAGTG+AGG - chr3_2:43539595-43539614 None:intergenic 45.0%
ATGGCTGCTTATGATGAAGC+CGG + chr3_2:43539769-43539788 Msa0406760:CDS 45.0%
ATAAAGGCTTCTCGCTCCAT+AGG - chr3_2:43539799-43539818 None:intergenic 45.0%
TCGAGCATTTCTACAGATCG+AGG + chr3_2:43539827-43539846 Msa0406760:CDS 45.0%
TTTCTACAGATCGAGGTCCT+TGG + chr3_2:43539834-43539853 Msa0406760:CDS 45.0%
GGGACTTGATAAAACTTGGG+AGG - chr3_2:43539868-43539887 None:intergenic 45.0%
GTCCCACATCAACTGTGAAT+TGG + chr3_2:43539998-43540017 Msa0406760:intron 45.0%
! CGCCAATTCACAGTTGATGT+GGG - chr3_2:43540003-43540022 None:intergenic 45.0%
CCACATCAACTGTGAATTGG+CGG + chr3_2:43540001-43540020 Msa0406760:intron 45.0%
CCCATATACCTAATGCCGTA+AGG + chr3_2:43540057-43540076 Msa0406760:intron 45.0%
ACGTTACGGAGAGCAATAAC+GGG - chr3_2:43540137-43540156 None:intergenic 45.0%
!! CTTATTTTCTCATCGGCTGC+AGG + chr3_2:43540212-43540231 Msa0406760:intron 45.0%
TGGAGAGCTGTTATCAGACT+AGG + chr3_2:43540238-43540257 Msa0406760:CDS 45.0%
AGAGCTGTTATCAGACTAGG+TGG + chr3_2:43540241-43540260 Msa0406760:CDS 45.0%
CTGCACCATGCGTTCTTATT+GGG - chr3_2:43540385-43540404 None:intergenic 45.0%
ACTGCACCATGCGTTCTTAT+TGG - chr3_2:43540386-43540405 None:intergenic 45.0%
ATAAGAACGCATGGTGCAGT+TGG + chr3_2:43540386-43540405 Msa0406760:intron 45.0%
!! CTTTAGGGCAACACAGGTAT+CGG - chr3_2:43540448-43540467 None:intergenic 45.0%
! CCAAGTCTTATCACGCTAGA+TGG - chr3_2:43540510-43540529 None:intergenic 45.0%
CCATCTAGCGTGATAAGACT+TGG + chr3_2:43540507-43540526 Msa0406760:intron 45.0%
AGGTAACTGCATCGAAGTTG+TGG + chr3_2:43540719-43540738 Msa0406760:intron 45.0%
TAACTGCATCGAAGTTGTGG+CGG + chr3_2:43540722-43540741 Msa0406760:CDS 45.0%
ACAGCAGAAATGCGAGATGA+CGG - chr3_2:43540824-43540843 None:intergenic 45.0%
GCCTCTATATCACCATCTCA+TGG + chr3_2:43541164-43541183 Msa0406760:intron 45.0%
GCCATGAGATGGTGATATAG+AGG - chr3_2:43541168-43541187 None:intergenic 45.0%
TGTCCTTGTGACAGAACTTC+TGG + chr3_2:43541194-43541213 Msa0406760:intron 45.0%
ATCAGGCAAGTGGCTAGAAA+AGG - chr3_2:43541305-43541324 None:intergenic 45.0%
GAAACAGAAGATCAGGCAAG+TGG - chr3_2:43541315-43541334 None:intergenic 45.0%
TTTCCACACTCGATGGTTGA+TGG - chr3_2:43541441-43541460 None:intergenic 45.0%
ACCATCGAGTGTGGAAAAAG+AGG + chr3_2:43541444-43541463 Msa0406760:CDS 45.0%
! ACCTCTTTTTCCACACTCGA+TGG - chr3_2:43541448-43541467 None:intergenic 45.0%
TCAAACCCATTCCACGACAA+AGG - chr3_2:43541556-43541575 None:intergenic 45.0%
! AGCACTGTTGGCTACTCTAT+TGG - chr3_2:43542166-43542185 None:intergenic 45.0%
AATAGAGTAGCCAACAGTGC+TGG + chr3_2:43542165-43542184 Msa0406760:intron 45.0%
GATGTGATATCCAGCACTGT+TGG - chr3_2:43542178-43542197 None:intergenic 45.0%
GCCATGCTGATAAATGCAGA+TGG + chr3_2:43542206-43542225 Msa0406760:intron 45.0%
CCCATCTGCATTTATCAGCA+TGG - chr3_2:43542210-43542229 None:intergenic 45.0%
CTGATAAATGCAGATGGGTG+TGG + chr3_2:43542212-43542231 Msa0406760:intron 45.0%
! ATTTTGCCGGAGATAACCAG+CGG - chr3_2:43542280-43542299 None:intergenic 45.0%
CTCCGGCAAAATGAAAAGCA+AGG + chr3_2:43542288-43542307 Msa0406760:intron 45.0%
AGTCAGCTGTTAAGGTCTGT+TGG + chr3_2:43542451-43542470 Msa0406760:intron 45.0%
GTCAGCTGTTAAGGTCTGTT+GGG + chr3_2:43542452-43542471 Msa0406760:intron 45.0%
ACAAAGAACACCGTCTGGTA+TGG + chr3_2:43542715-43542734 Msa0406760:CDS 45.0%
GACAGAGCTGCAAACATAGA+AGG + chr3_2:43542740-43542759 Msa0406760:CDS 45.0%
CTGCAAACATAGAAGGAGAC+AGG + chr3_2:43542747-43542766 Msa0406760:CDS 45.0%
GAGACAGGCAGTTAAGTTAC+TGG + chr3_2:43542762-43542781 Msa0406760:CDS 45.0%
AATGAAGGGAACTCACATGG+GGG - chr3_2:43542878-43542897 None:intergenic 45.0%
CCCCTGTCCATATGTTATTC+AGG + chr3_2:43543054-43543073 Msa0406760:three_prime_UTR 45.0%
AACCTTAAGAGCAGTCTCCA+AGG - chr3_2:43543081-43543100 None:intergenic 45.0%
!! TATTAAAAAATATAACTTTA+GGG - chr3_2:43540463-43540482 None:intergenic 5.0%
!! TTATTAAAAAATATAACTTT+AGG - chr3_2:43540464-43540483 None:intergenic 5.0%
AGAGAAAGAAGAGTGAGCCG+TGG + chr3_2:43537400-43537419 Msa0406760:five_prime_UTR 50.0%
TGGCTTCAACTGCACCATGT+TGG - chr3_2:43538952-43538971 None:intergenic 50.0%
ACAACATGGGTCGACGATCT+AGG + chr3_2:43539215-43539234 Msa0406760:intron 50.0%
CTTGGGAGGCTTGAATTCCA+AGG - chr3_2:43539854-43539873 None:intergenic 50.0%
! CCGCCAATTCACAGTTGATG+TGG - chr3_2:43540004-43540023 None:intergenic 50.0%
!! GTTTTAGGTGGAGATGTGGG+TGG + chr3_2:43540079-43540098 Msa0406760:intron 50.0%
! TTCTCATCGGCTGCAGGTTA+TGG + chr3_2:43540218-43540237 Msa0406760:intron 50.0%
CAGACTAGGTGGCTATGAAG+TGG + chr3_2:43540252-43540271 Msa0406760:CDS 50.0%
TCTTTCCACCCTCCCAAGTA+AGG + chr3_2:43540757-43540776 Msa0406760:intron 50.0%
CAGCAGAAATGCGAGATGAC+GGG - chr3_2:43540823-43540842 None:intergenic 50.0%
AGACTGTAGTGCAAGTCCTG+TGG - chr3_2:43541002-43541021 None:intergenic 50.0%
GGACTTGCACTACAGTCTCA+TGG + chr3_2:43541004-43541023 Msa0406760:intron 50.0%
GGACAACTCATGCCATGAGA+TGG - chr3_2:43541179-43541198 None:intergenic 50.0%
!! TGGTTGATGGAGTGATCCGA+CGG - chr3_2:43541428-43541447 None:intergenic 50.0%
ACTCCATCAACCATCGAGTG+TGG + chr3_2:43541435-43541454 Msa0406760:CDS 50.0%
TAACCAGCGGTCTAGACAAG+AGG - chr3_2:43542267-43542286 None:intergenic 50.0%
! TCTAGACCGCTGGTTATCTC+CGG + chr3_2:43542271-43542290 Msa0406760:intron 50.0%
GGTTCCTGAGTCAGCTGTTA+AGG + chr3_2:43542443-43542462 Msa0406760:CDS 50.0%
! CAGACCTTAACAGCTGACTC+AGG - chr3_2:43542450-43542469 None:intergenic 50.0%
GCTCTGTCATCCATACCAGA+CGG - chr3_2:43542728-43542747 None:intergenic 50.0%
GTCCTTGGAGACTGCTCTTA+AGG + chr3_2:43543076-43543095 Msa0406760:three_prime_UTR 50.0%
AAGAAGAGTGAGCCGTGGAG+AGG + chr3_2:43537405-43537424 Msa0406760:five_prime_UTR 55.0%
TGATGAAGCCGGTACGCCTA+TGG + chr3_2:43539780-43539799 Msa0406760:CDS 55.0%
TTCTCGCTCCATAGGCGTAC+CGG - chr3_2:43539791-43539810 None:intergenic 55.0%
GGTGGTGTCTTCCTCTCTTG+TGG + chr3_2:43540097-43540116 Msa0406760:intron 55.0%
TCGAAGTTGTGGCGGTCAGT+AGG + chr3_2:43540730-43540749 Msa0406760:CDS 55.0%
CTAGTCCTTACTTGGGAGGG+TGG - chr3_2:43540765-43540784 None:intergenic 55.0%
! GTTGATGGAGTGATCCGACG+GGG - chr3_2:43541426-43541445 None:intergenic 55.0%
!! GGTTGATGGAGTGATCCGAC+GGG - chr3_2:43541427-43541446 None:intergenic 55.0%
TATTGCTCTTTGCCCCCCTC+TGG + chr3_2:43541473-43541492 Msa0406760:intron 55.0%
AAGCCTCTTGTCTAGACCGC+TGG + chr3_2:43542261-43542280 Msa0406760:intron 55.0%
ACCGCTGTTTATCAGGCTCC+AGG + chr3_2:43542342-43542361 Msa0406760:CDS 55.0%
GCCTGGAGCCTGATAAACAG+CGG - chr3_2:43542346-43542365 None:intergenic 55.0%
GTTTATCAGGCTCCAGGCTC+AGG + chr3_2:43542348-43542367 Msa0406760:CDS 55.0%
CTGCACGTGCAATGCAAGGT+TGG + chr3_2:43542391-43542410 Msa0406760:CDS 55.0%
TTGGCATGCTCAGCGCCTTA+TGG + chr3_2:43542410-43542429 Msa0406760:CDS 55.0%
TGGCATGCTCAGCGCCTTAT+GGG + chr3_2:43542411-43542430 Msa0406760:CDS 55.0%
GCTCAGCGCCTTATGGGATA+CGG + chr3_2:43542417-43542436 Msa0406760:CDS 55.0%
GAACCTCGCCGTATCCCATA+AGG - chr3_2:43542428-43542447 None:intergenic 55.0%
GGGGATGCACAAAATCGCTC+TGG - chr3_2:43543018-43543037 None:intergenic 55.0%
TGGACAGGGGCAGTACCAAT+GGG - chr3_2:43543044-43543063 None:intergenic 55.0%
ATGGACAGGGGCAGTACCAA+TGG - chr3_2:43543045-43543064 None:intergenic 55.0%
AAGAGTGAGCCGTGGAGAGG+TGG + chr3_2:43537408-43537427 Msa0406760:five_prime_UTR 60.0%
TCAGCAGCTCCACCTCTCCA+CGG - chr3_2:43537420-43537439 None:intergenic 60.0%
GTCGACCCATGTTGTCGAGC+AGG - chr3_2:43539210-43539229 None:intergenic 60.0%
ATATGACCCGTGCGGCAGCA+CGG + chr3_2:43539391-43539410 Msa0406760:intron 60.0%
TCATCAGCAGCAGCAGCAGC+AGG - chr3_2:43539554-43539573 None:intergenic 60.0%
ATCAGGCTCCAGGCTCAGGT+AGG + chr3_2:43542352-43542371 Msa0406760:CDS 60.0%
TCAGGCTCCAGGCTCAGGTA+GGG + chr3_2:43542353-43542372 Msa0406760:CDS 60.0%
TTGTGCATCCCCCCACCCAT+TGG + chr3_2:43543026-43543045 Msa0406760:three_prime_UTR 60.0%
AGGGGCAGTACCAATGGGTG+GGG - chr3_2:43543039-43543058 None:intergenic 60.0%
CAGGGGCAGTACCAATGGGT+GGG - chr3_2:43543040-43543059 None:intergenic 60.0%
ACAGGGGCAGTACCAATGGG+TGG - chr3_2:43543041-43543060 None:intergenic 60.0%
TATGACCCGTGCGGCAGCAC+GGG + chr3_2:43539392-43539411 Msa0406760:intron 65.0%
GGGGAGTTACAGCTCCCCGT+CGG + chr3_2:43541409-43541428 Msa0406760:CDS 65.0%
GCGCCTTATGGGATACGGCG+AGG + chr3_2:43542422-43542441 Msa0406760:CDS 65.0%
GGGCAGTACCAATGGGTGGG+GGG - chr3_2:43543037-43543056 None:intergenic 65.0%
GGGGCAGTACCAATGGGTGG+GGG - chr3_2:43543038-43543057 None:intergenic 65.0%
AACGACCCGTGCTGCCGCAC+GGG - chr3_2:43539400-43539419 None:intergenic 70.0%
CAACGACCCGTGCTGCCGCA+CGG - chr3_2:43539401-43539420 None:intergenic 70.0%
CTCCAGGCTCAGGTAGGGCG+CGG + chr3_2:43542358-43542377 Msa0406760:CDS 70.0%
AGGCTCAGGTAGGGCGCGGA+GGG + chr3_2:43542362-43542381 Msa0406760:CDS 70.0%
CGTGCGGCAGCACGGGTCGT+TGG + chr3_2:43539399-43539418 Msa0406760:intron 75.0%
CTCCGCGCCCTACCTGAGCC+TGG - chr3_2:43542363-43542382 None:intergenic 75.0%
CAGGCTCAGGTAGGGCGCGG+AGG + chr3_2:43542361-43542380 Msa0406760:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 43537391 43543118 43537391 ID=Msa0406760;Name=Msa0406760
chr3_2 mRNA 43537391 43543118 43537391 ID=Msa0406760-mRNA-1;Parent=Msa0406760;Name=Msa0406760-mRNA-1;_AED=0.14;_eAED=0.14;_QI=260|1|1|1|0.6|0.63|11|310|282
chr3_2 exon 43537391 43537481 43537391 ID=Msa0406760-mRNA-1:exon:8394;Parent=Msa0406760-mRNA-1
chr3_2 exon 43537514 43537672 43537514 ID=Msa0406760-mRNA-1:exon:8395;Parent=Msa0406760-mRNA-1
chr3_2 exon 43539469 43539679 43539469 ID=Msa0406760-mRNA-1:exon:8396;Parent=Msa0406760-mRNA-1
chr3_2 exon 43539769 43539902 43539769 ID=Msa0406760-mRNA-1:exon:8397;Parent=Msa0406760-mRNA-1
chr3_2 exon 43540234 43540273 43540234 ID=Msa0406760-mRNA-1:exon:8398;Parent=Msa0406760-mRNA-1
chr3_2 exon 43540721 43540773 43540721 ID=Msa0406760-mRNA-1:exon:8399;Parent=Msa0406760-mRNA-1
chr3_2 exon 43541005 43541050 43541005 ID=Msa0406760-mRNA-1:exon:8400;Parent=Msa0406760-mRNA-1
chr3_2 exon 43541373 43541465 43541373 ID=Msa0406760-mRNA-1:exon:8401;Parent=Msa0406760-mRNA-1
chr3_2 exon 43542342 43542464 43542342 ID=Msa0406760-mRNA-1:exon:8402;Parent=Msa0406760-mRNA-1
chr3_2 exon 43542573 43542624 43542573 ID=Msa0406760-mRNA-1:exon:8403;Parent=Msa0406760-mRNA-1
chr3_2 exon 43542702 43543118 43542702 ID=Msa0406760-mRNA-1:exon:8404;Parent=Msa0406760-mRNA-1
chr3_2 five_prime_UTR 43537391 43537481 43537391 ID=Msa0406760-mRNA-1:five_prime_utr;Parent=Msa0406760-mRNA-1
chr3_2 five_prime_UTR 43537514 43537672 43537514 ID=Msa0406760-mRNA-1:five_prime_utr;Parent=Msa0406760-mRNA-1
chr3_2 five_prime_UTR 43539469 43539478 43539469 ID=Msa0406760-mRNA-1:five_prime_utr;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43539479 43539679 43539479 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43539769 43539902 43539769 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43540234 43540273 43540234 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43540721 43540773 43540721 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43541005 43541050 43541005 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43541373 43541465 43541373 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43542342 43542464 43542342 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43542573 43542624 43542573 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 CDS 43542702 43542808 43542702 ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2 three_prime_UTR 43542809 43543118 43542809 ID=Msa0406760-mRNA-1:three_prime_utr;Parent=Msa0406760-mRNA-1
Gene Sequence

>Msa0406760

ATGGAGGGTCATGAAATGGATCTCGTTCAGAATGCTGCTGCTGCTGCTGCTGATCAACAAATGCTTGATCAACCTGCTGCTGCTGCTGCTGATGACACAAAAGTCAATTCTACCCTCACTCCTCAACTTGAACAACAACAACAACAACCAAAACCTAAAGTTAAGAACGTTACAGAAGTCAATAATAACAATGCTGGCGAGATGGCTGCTTATGATGAAGCCGGTACGCCTATGGAGCGAGAAGCCTTTATGAAAGAGCTCGAGCATTTCTACAGATCGAGGTCCTTGGAATTCAAGCCTCCCAAGTTTTATCAAGTCCCATTGAATTGCCTCAAGTTATGGAGAGCTGTTATCAGACTAGGTGGCTATGAAGTGGTAACTGCATCGAAGTTGTGGCGGTCAGTAGGAGAGTCTTTCCACCCTCCCAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGTTACAGCTCCCCGTCGGATCACTCCATCAACCATCGAGTGTGGAAAAAGAGACCGCTGTTTATCAGGCTCCAGGCTCAGGTAGGGCGCGGAGGGATGCGGCTGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTATGGGATACGGCGAGGTTCCTGAGTCAGCTGTTAAGGACAAGAACTTCAATCCCACACCAAAACGTGAAAAGAACCTAAAAAATATCGGTGTGATCAACAAACAAAGAACACCGTCTGGTATGGATGACAGAGCTGCAAACATAGAAGGAGACAGGCAGTTAAGTTACTGGTCTTTTCTATCAATTGAAATATAA

Protein sequence

>Msa0406760

MEGHEMDLVQNAAAAAADQQMLDQPAAAAADDTKVNSTLTPQLEQQQQQPKPKVKNVTEVNNNNAGEMAAYDEAGTPMEREAFMKELEHFYRSRSLEFKPPKFYQVPLNCLKLWRAVIRLGGYEVVTASKLWRSVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSLHQPSSVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLMGYGEVPESAVKDKNFNPTPKREKNLKNIGVINKQRTPSGMDDRAANIEGDRQLSYWSFLSIEI*