AlfalfaGEDB | Msa0406760

M. sativa cultivar zhongmu-4 / Msa0406760

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016143 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901135 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406760	KEH36357.1	93.091	275	10	3	1	272	1	269	1.40e-172	489

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406760	sp\|Q0WNR6\|ARID5_ARATH	71.282	195	52	4	67	260	132	323	1.08e-82	258

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406760	A0A072V3I1	93.091	275	10	3	1	272	1	269	6.69e-173	489

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TFs/TRs:

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Gene ID	Type	Classification
Msa0406760	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406760	MtrunA17_Chr3g0144341	93.091	275	10	3	1	272	1	269	2.15e-175	488
Msa0406760	MtrunA17_Chr5g0407561	50.189	265	97	6	24	261	232	488	2.06e-74	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0406760	AT1G76510.2	71.282	195	52	4	67	260	132	323	1.10e-83	258
Msa0406760	AT1G76510.4	71.282	195	52	4	67	260	132	323	1.10e-83	258
Msa0406760	AT1G76510.1	71.282	195	52	4	67	260	132	323	1.10e-83	258
Msa0406760	AT1G76510.3	64.789	213	48	5	72	260	137	346	1.57e-77	244
Msa0406760	AT1G20910.2	64.251	207	71	3	67	273	96	299	8.80e-77	239
Msa0406760	AT1G20910.1	64.251	207	71	3	67	273	96	299	1.19e-76	239
Msa0406760	AT2G17410.1	61.957	184	64	2	72	254	489	667	6.06e-66	219
Msa0406760	AT2G17410.3	61.957	184	64	2	72	254	489	667	6.06e-66	219
Msa0406760	AT2G17410.2	61.957	184	64	2	72	254	489	667	7.57e-66	219

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Find 107 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAGAATGGATAATT+GGG	0.438599	3_2:-43537524	None:intergenic
AAAAGCATAAGAGAGAGATT+GGG	0.443286	3_2:+43541389	Msa0406760:CDS
AAAGCATAAGAGAGAGATTG+GGG	0.512312	3_2:+43541390	Msa0406760:CDS
AAATAAAAGATAGTAGTAGA+TGG	0.402080	3_2:-43542841	None:intergenic
AAATAGTAAGGGAGGAAAGA+TGG	0.476177	3_2:-43543110	None:intergenic
AACAAACAAAGAACACCGTC+TGG	0.512461	3_2:+43542710	Msa0406760:CDS
AACCTTAAGAGCAGTCTCCA+AGG	0.593819	3_2:-43543078	None:intergenic
AACGAAACTTGTTATAATGA+AGG	0.421553	3_2:-43542890	None:intergenic
AAGAAGAGTGAGCCGTGGAG+AGG	0.592568	3_2:+43537405	Msa0406760:five_prime_UTR
AAGAGTGAGCCGTGGAGAGG+TGG	0.512363	3_2:+43537408	Msa0406760:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAACTCAGAATGGATAAT+TGG	-	chr3_2:43537528-43537547	None:intergenic	30.0%
GATTCAATGAAAACTCAGAA+TGG	-	chr3_2:43537536-43537555	None:intergenic	30.0%
GAGAATTAATTAGAGTAACG+CGG	-	chr3_2:43537594-43537613	None:intergenic	30.0%
CTCTTAATTAAATAGGTCAG+GGG	-	chr3_2:43537840-43537859	None:intergenic	30.0%
CTCTTAATTAAATAGGTCAG+GGG	-	chr3_2:43537840-43537859	None:intergenic	30.0%
CTCTTAATTAAATAGGTCAG+GGG	-	chr3_2:43537840-43537859	None:intergenic	30.0%
CTCTTAATTAAATAGGTCAG+GGG	-	chr3_2:43537840-43537859	None:intergenic	30.0%
CTCTTAATTAAATAGGTCAG+GGG	-	chr3_2:43537840-43537859	None:intergenic	30.0%
TGTTAGAGACTTAGAGTTAA+TGG	+	chr3_2:43538637-43538656	Msa0406760:intron	30.0%
CTTAGAGTTAATGGCAAAAT+AGG	+	chr3_2:43538646-43538665	Msa0406760:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	43537391	43543118	43537391	ID=Msa0406760;Name=Msa0406760
chr3_2	mRNA	43537391	43543118	43537391	ID=Msa0406760-mRNA-1;Parent=Msa0406760;Name=Msa0406760-mRNA-1;_AED=0.14;_eAED=0.14;_QI=260\|1\|1\|1\|0.6\|0.63\|11\|310\|282
chr3_2	exon	43537391	43537481	43537391	ID=Msa0406760-mRNA-1:exon:8394;Parent=Msa0406760-mRNA-1
chr3_2	exon	43537514	43537672	43537514	ID=Msa0406760-mRNA-1:exon:8395;Parent=Msa0406760-mRNA-1
chr3_2	exon	43539469	43539679	43539469	ID=Msa0406760-mRNA-1:exon:8396;Parent=Msa0406760-mRNA-1
chr3_2	exon	43539769	43539902	43539769	ID=Msa0406760-mRNA-1:exon:8397;Parent=Msa0406760-mRNA-1
chr3_2	exon	43540234	43540273	43540234	ID=Msa0406760-mRNA-1:exon:8398;Parent=Msa0406760-mRNA-1
chr3_2	exon	43540721	43540773	43540721	ID=Msa0406760-mRNA-1:exon:8399;Parent=Msa0406760-mRNA-1
chr3_2	exon	43541005	43541050	43541005	ID=Msa0406760-mRNA-1:exon:8400;Parent=Msa0406760-mRNA-1
chr3_2	exon	43541373	43541465	43541373	ID=Msa0406760-mRNA-1:exon:8401;Parent=Msa0406760-mRNA-1
chr3_2	exon	43542342	43542464	43542342	ID=Msa0406760-mRNA-1:exon:8402;Parent=Msa0406760-mRNA-1
chr3_2	exon	43542573	43542624	43542573	ID=Msa0406760-mRNA-1:exon:8403;Parent=Msa0406760-mRNA-1
chr3_2	exon	43542702	43543118	43542702	ID=Msa0406760-mRNA-1:exon:8404;Parent=Msa0406760-mRNA-1
chr3_2	five_prime_UTR	43537391	43537481	43537391	ID=Msa0406760-mRNA-1:five_prime_utr;Parent=Msa0406760-mRNA-1
chr3_2	five_prime_UTR	43537514	43537672	43537514	ID=Msa0406760-mRNA-1:five_prime_utr;Parent=Msa0406760-mRNA-1
chr3_2	five_prime_UTR	43539469	43539478	43539469	ID=Msa0406760-mRNA-1:five_prime_utr;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43539479	43539679	43539479	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43539769	43539902	43539769	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43540234	43540273	43540234	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43540721	43540773	43540721	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43541005	43541050	43541005	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43541373	43541465	43541373	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43542342	43542464	43542342	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43542573	43542624	43542573	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	CDS	43542702	43542808	43542702	ID=Msa0406760-mRNA-1:cds;Parent=Msa0406760-mRNA-1
chr3_2	three_prime_UTR	43542809	43543118	43542809	ID=Msa0406760-mRNA-1:three_prime_utr;Parent=Msa0406760-mRNA-1

Gene Sequence

>Msa0406760

ATGGAGGGTCATGAAATGGATCTCGTTCAGAATGCTGCTGCTGCTGCTGCTGATCAACAAATGCTTGATCAACCTGCTGCTGCTGCTGCTGATGACACAAAAGTCAATTCTACCCTCACTCCTCAACTTGAACAACAACAACAACAACCAAAACCTAAAGTTAAGAACGTTACAGAAGTCAATAATAACAATGCTGGCGAGATGGCTGCTTATGATGAAGCCGGTACGCCTATGGAGCGAGAAGCCTTTATGAAAGAGCTCGAGCATTTCTACAGATCGAGGTCCTTGGAATTCAAGCCTCCCAAGTTTTATCAAGTCCCATTGAATTGCCTCAAGTTATGGAGAGCTGTTATCAGACTAGGTGGCTATGAAGTGGTAACTGCATCGAAGTTGTGGCGGTCAGTAGGAGAGTCTTTCCACCCTCCCAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGTTACAGCTCCCCGTCGGATCACTCCATCAACCATCGAGTGTGGAAAAAGAGACCGCTGTTTATCAGGCTCCAGGCTCAGGTAGGGCGCGGAGGGATGCGGCTGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTATGGGATACGGCGAGGTTCCTGAGTCAGCTGTTAAGGACAAGAACTTCAATCCCACACCAAAACGTGAAAAGAACCTAAAAAATATCGGTGTGATCAACAAACAAAGAACACCGTCTGGTATGGATGACAGAGCTGCAAACATAGAAGGAGACAGGCAGTTAAGTTACTGGTCTTTTCTATCAATTGAAATATAA

Protein sequence

>Msa0406760

MEGHEMDLVQNAAAAAADQQMLDQPAAAAADDTKVNSTLTPQLEQQQQQPKPKVKNVTEVNNNNAGEMAAYDEAGTPMEREAFMKELEHFYRSRSLEFKPPKFYQVPLNCLKLWRAVIRLGGYEVVTASKLWRSVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSLHQPSSVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLMGYGEVPESAVKDKNFNPTPKREKNLKNIGVINKQRTPSGMDDRAANIEGDRQLSYWSFLSIEI*