AlfalfaGEDB | Msa0407420

M. sativa cultivar zhongmu-4 / Msa0407420

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	ACJ84046.1	77.241	145	10	1	6	127	101	245	9.21e-70	222

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	sp\|Q5HZ36\|GAT21_ARATH	66.667	51	16	1	52	101	213	263	4.21e-16	76.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	B7FH17	77.241	145	10	1	6	127	101	245	4.40e-70	222

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TFs/TRs:

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Gene ID	Type	Classification
Msa0407420	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	MtrunA17_Chr1g0151461	77.241	145	10	1	6	127	102	246	9.63e-74	222
Msa0407420	MtrunA17_Chr4g0068031	60.417	48	19	0	65	112	27	74	1.25e-15	68.6
Msa0407420	MtrunA17_Chr4g0071301	45.918	98	31	4	12	97	134	221	2.30e-15	70.9
Msa0407420	MtrunA17_Chr2g0299081	82.979	47	8	0	66	112	167	213	9.60e-14	66.2
Msa0407420	MtrunA17_Chr7g0271861	38.750	80	33	2	68	131	22	101	2.45e-13	62.4
Msa0407420	MtrunA17_Chr5g0404131	55.769	52	20	1	56	104	177	228	7.65e-12	60.8
Msa0407420	MtrunA17_Chr8g0373231	63.158	38	14	0	67	104	124	161	1.91e-11	59.3
Msa0407420	MtrunA17_Chr1g0213161	59.459	37	15	0	67	103	151	187	3.50e-11	58.5
Msa0407420	MtrunA17_Chr1g0199671	56.098	41	18	0	63	103	237	277	4.44e-11	58.9
Msa0407420	MtrunA17_Chr5g0395391	63.889	36	13	0	68	103	168	203	6.58e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	AT5G56860.1	66.667	51	16	1	52	101	213	263	4.28e-17	76.6
Msa0407420	AT5G49300.1	57.407	54	23	0	64	117	32	85	8.18e-17	72.0
Msa0407420	AT4G26150.1	45.556	90	41	2	12	99	147	230	3.16e-16	73.9
Msa0407420	AT5G26930.1	64.286	42	15	0	64	105	22	63	1.95e-15	67.8
Msa0407420	AT4G16141.1	65.854	41	14	0	65	105	34	74	3.84e-14	66.2
Msa0407420	AT3G06740.1	64.286	42	15	0	65	106	38	79	5.13e-14	65.1
Msa0407420	AT3G16870.1	54.098	61	24	1	65	125	39	95	5.90e-14	65.9
Msa0407420	AT4G36620.1	56.250	48	21	0	64	111	71	118	3.49e-12	61.2
Msa0407420	AT2G18380.1	65.854	41	13	1	68	107	92	132	1.13e-11	60.1
Msa0407420	AT3G50870.1	58.696	46	18	1	67	111	151	196	4.98e-11	58.9

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Find 38 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGGATGTCTTCAAAGATG+AGG	0.632702	3_2:-45280311	Msa0407420:intron
ACAAGCCCTAGTAGTAACTG+CGG	0.721976	3_2:-45280116	Msa0407420:CDS
ACAATCAGAACAAACCCTAA+CGG	0.662845	3_2:+45280085	None:intergenic
ACTCCTCCAAAGTGGGGTAT+GGG	0.495268	3_2:+45280055	None:intergenic
ACTGCGGTAACAACACCGTT+AGG	0.469462	3_2:-45280100	Msa0407420:CDS
ACTTTGGAGGAGTGGCCCTA+TGG	0.441269	3_2:-45280045	Msa0407420:CDS
AGGGCCACTCCTCCAAAGTG+GGG	0.692599	3_2:+45280049	None:intergenic
AGTGGATGTAGCCAATCCAT+TGG	0.545257	3_2:+45279402	None:intergenic
AGTTACTACTAGGGCTTGTT+TGG	0.350929	3_2:+45280120	None:intergenic
ATAGGGCCACTCCTCCAAAG+TGG	0.665162	3_2:+45280047	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATTACTAGGTCTCATCAT+TGG	+	chr3_2:45279526-45279545	None:intergenic	30.0%
ATGATGAGACCTAGTAATTA+CGG	-	chr3_2:45279526-45279545	Msa0407420:intron	30.0%
TAGGTTACGTTTACAAAGTA+AGG	+	chr3_2:45280353-45280372	None:intergenic	30.0%
TAATTACTAGGTCTCATCAT+TGG	+	chr3_2:45279526-45279545	None:intergenic	30.0%
ATGATGAGACCTAGTAATTA+CGG	-	chr3_2:45279526-45279545	Msa0407420:intron	30.0%
TAGGTTACGTTTACAAAGTA+AGG	+	chr3_2:45280353-45280372	None:intergenic	30.0%
AGCAGCAAAAAGAATAGTCA+TGG	-	chr3_2:45279360-45279379	Msa0407420:CDS	35.0%
GCAGCAAAAAGAATAGTCAT+GGG	-	chr3_2:45279361-45279380	Msa0407420:CDS	35.0%
AATGGATGTCTTCAAAGATG+AGG	-	chr3_2:45279391-45279410	Msa0407420:CDS	35.0%
ACAATCAGAACAAACCCTAA+CGG	+	chr3_2:45279620-45279639	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	45279351	45280373	45279351	ID=Msa0407420;Name=Msa0407420
chr3_2	mRNA	45279351	45280373	45279351	ID=Msa0407420-mRNA-1;Parent=Msa0407420;Name=Msa0407420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|0.5\|0.33\|3\|0\|133
chr3_2	exon	45280312	45280373	45280312	ID=Msa0407420-mRNA-1:exon:8772;Parent=Msa0407420-mRNA-1
chr3_2	exon	45280037	45280241	45280037	ID=Msa0407420-mRNA-1:exon:8771;Parent=Msa0407420-mRNA-1
chr3_2	exon	45279351	45279485	45279351	ID=Msa0407420-mRNA-1:exon:8770;Parent=Msa0407420-mRNA-1
chr3_2	CDS	45280312	45280373	45280312	ID=Msa0407420-mRNA-1:cds;Parent=Msa0407420-mRNA-1
chr3_2	CDS	45280037	45280241	45280037	ID=Msa0407420-mRNA-1:cds;Parent=Msa0407420-mRNA-1
chr3_2	CDS	45279351	45279485	45279351	ID=Msa0407420-mRNA-1:cds;Parent=Msa0407420-mRNA-1

Gene Sequence

>Msa0407420

ATGGAAGATAGCAGCAAAAAGAATAGTCATGGGTCTGAGAAATGGATGTCTTCAAAGATGAGTATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAGACCTAGTAATTACGGCACTAGTCCAAGATATCAAAATATAAGGTACAACCAAACAAGCCCTAGTAGTAACTGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTGCATCCCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGATTGGCTACATCCACTAAAACTAAAGTGCTTAAGATAAATAAGCCTTACTTTGTAAACGTAACCTAG

Protein sequence

>Msa0407420

MEDSSKKNSHGSEKWMSSKMSIAATTDKAIKTTTPMMRPSNYGTSPRYQNIRYNQTSPSSNCGNNTVRVCSDCSASHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSTKTKVLKINKPYFVNVT*