AlfalfaGEDB | Msa0407420

M. sativa cultivar zhongmu-4 / Msa0407420

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	ACJ84046.1	77.241	145	10	1	6	127	101	245	9.21e-70	222

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	sp\|Q5HZ36\|GAT21_ARATH	66.667	51	16	1	52	101	213	263	4.21e-16	76.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	B7FH17	77.241	145	10	1	6	127	101	245	4.40e-70	222

TFs/TRs:

Gene ID	Type	Classification
Msa0407420	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	MtrunA17_Chr1g0151461	77.241	145	10	1	6	127	102	246	9.63e-74	222
Msa0407420	MtrunA17_Chr4g0068031	60.417	48	19	0	65	112	27	74	1.25e-15	68.6
Msa0407420	MtrunA17_Chr4g0071301	45.918	98	31	4	12	97	134	221	2.30e-15	70.9
Msa0407420	MtrunA17_Chr2g0299081	82.979	47	8	0	66	112	167	213	9.60e-14	66.2
Msa0407420	MtrunA17_Chr7g0271861	38.750	80	33	2	68	131	22	101	2.45e-13	62.4
Msa0407420	MtrunA17_Chr5g0404131	55.769	52	20	1	56	104	177	228	7.65e-12	60.8
Msa0407420	MtrunA17_Chr8g0373231	63.158	38	14	0	67	104	124	161	1.91e-11	59.3
Msa0407420	MtrunA17_Chr1g0213161	59.459	37	15	0	67	103	151	187	3.50e-11	58.5
Msa0407420	MtrunA17_Chr1g0199671	56.098	41	18	0	63	103	237	277	4.44e-11	58.9
Msa0407420	MtrunA17_Chr5g0395391	63.889	36	13	0	68	103	168	203	6.58e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407420	AT5G56860.1	66.667	51	16	1	52	101	213	263	4.28e-17	76.6
Msa0407420	AT5G49300.1	57.407	54	23	0	64	117	32	85	8.18e-17	72.0
Msa0407420	AT4G26150.1	45.556	90	41	2	12	99	147	230	3.16e-16	73.9
Msa0407420	AT5G26930.1	64.286	42	15	0	64	105	22	63	1.95e-15	67.8
Msa0407420	AT4G16141.1	65.854	41	14	0	65	105	34	74	3.84e-14	66.2
Msa0407420	AT3G06740.1	64.286	42	15	0	65	106	38	79	5.13e-14	65.1
Msa0407420	AT3G16870.1	54.098	61	24	1	65	125	39	95	5.90e-14	65.9
Msa0407420	AT4G36620.1	56.250	48	21	0	64	111	71	118	3.49e-12	61.2
Msa0407420	AT2G18380.1	65.854	41	13	1	68	107	92	132	1.13e-11	60.1
Msa0407420	AT3G50870.1	58.696	46	18	1	67	111	151	196	4.98e-11	58.9
Msa0407420	AT2G45050.1	46.000	50	27	0	54	103	165	214	8.66e-11	58.2

Find 38 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGGTTACGTTTACAAAGTA+AGG	0.335349	3_2:+45279352	None:intergenic
GTCCAAGATATCAAAATATA+AGG	0.343709	3_2:-45280148	Msa0407420:CDS
AGTTACTACTAGGGCTTGTT+TGG	0.350929	3_2:+45280120	None:intergenic
TTTGCAATGCTTGTGGAATC+AGG	0.357272	3_2:-45279459	Msa0407420:CDS
CACTCCTCCAAAGTGGGGTA+TGG	0.383367	3_2:+45280054	None:intergenic
TTGTTACCGCAGTTACTACT+AGG	0.407070	3_2:+45280110	None:intergenic
CTTTGGAGGAGTGGCCCTAT+GGG	0.439971	3_2:-45280044	Msa0407420:CDS
ACTTTGGAGGAGTGGCCCTA+TGG	0.441269	3_2:-45280045	Msa0407420:CDS
ATAGTCATGGGTCTGAGAAA+TGG	0.443042	3_2:-45280329	Msa0407420:CDS
ATGATGAGACCTAGTAATTA+CGG	0.457157	3_2:-45280176	Msa0407420:CDS
ACTGCGGTAACAACACCGTT+AGG	0.469462	3_2:-45280100	Msa0407420:CDS
CTTGATAGCTTTGTCAGTAG+TGG	0.482210	3_2:+45280211	None:intergenic
ACTCCTCCAAAGTGGGGTAT+GGG	0.495268	3_2:+45280055	None:intergenic
TAATTACTAGGTCTCATCAT+TGG	0.500101	3_2:+45280179	None:intergenic
GGACTAGTGCCGTAATTACT+AGG	0.503988	3_2:+45280167	None:intergenic
GTGCATCCCATACCCCACTT+TGG	0.514341	3_2:-45280061	Msa0407420:CDS
GGCTGAAGCTGCCAATGGAT+TGG	0.519083	3_2:-45279413	Msa0407420:CDS
TCAGGCAGAGAAAGGCAAGA+AGG	0.520139	3_2:-45279441	Msa0407420:CDS
CAGGCAGAGAAAGGCAAGAA+GGG	0.526577	3_2:-45279440	Msa0407420:CDS
GAGTGGCCCTATGGGTCCTA+AGG	0.528357	3_2:-45280036	Msa0407420:intron
CGAATTACCTTAGGACCCAT+AGG	0.541287	3_2:+45280029	None:intergenic
CTGCGGTAACAACACCGTTA+GGG	0.542381	3_2:-45280099	Msa0407420:CDS
CAGTCACTTTGCAATGCTTG+TGG	0.543553	3_2:-45279466	Msa0407420:CDS
AGTGGATGTAGCCAATCCAT+TGG	0.545257	3_2:+45279402	None:intergenic
TTGTGGAATCAGGCAGAGAA+AGG	0.551715	3_2:-45279449	Msa0407420:CDS
TAGGGCCACTCCTCCAAAGT+GGG	0.565226	3_2:+45280048	None:intergenic
TCCATTGGCAGCTTCAGCCA+TGG	0.575840	3_2:+45279417	None:intergenic
CATCCCATACCCCACTTTGG+AGG	0.581850	3_2:-45280058	Msa0407420:CDS
GCCATGGCTGAAGCTGCCAA+TGG	0.585473	3_2:-45279418	Msa0407420:CDS
GAGAAAGGCAAGAAGGGCCA+TGG	0.585866	3_2:-45279434	Msa0407420:CDS
TGTTACCGCAGTTACTACTA+GGG	0.601167	3_2:+45280111	None:intergenic
GAATTACCTTAGGACCCATA+GGG	0.604094	3_2:+45280030	None:intergenic
CATACCCCACTTTGGAGGAG+TGG	0.615240	3_2:-45280053	Msa0407420:CDS
AATGGATGTCTTCAAAGATG+AGG	0.632702	3_2:-45280311	Msa0407420:intron
ACAATCAGAACAAACCCTAA+CGG	0.662845	3_2:+45280085	None:intergenic
ATAGGGCCACTCCTCCAAAG+TGG	0.665162	3_2:+45280047	None:intergenic
AGGGCCACTCCTCCAAAGTG+GGG	0.692599	3_2:+45280049	None:intergenic
ACAAGCCCTAGTAGTAACTG+CGG	0.721976	3_2:-45280116	Msa0407420:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTTATAAAAAAAAATTA+TGG	+	chr3_2:45279858-45279877	None:intergenic	0.0%
!!!	TAATTTTTAATATTATATAA+CGG	-	chr3_2:45280056-45280075	Msa0407420:CDS	0.0%
!!!	ATTTTTATAAAAAAAAATTA+TGG	+	chr3_2:45279858-45279877	None:intergenic	0.0%
!!!	TAATTTTTAATATTATATAA+CGG	-	chr3_2:45280056-45280075	Msa0407420:CDS	0.0%
!!	ATTAATATTTATTGTTCATA+AGG	-	chr3_2:45279802-45279821	Msa0407420:intron	10.0%
!!	TTAATATTTATTGTTCATAA+GGG	-	chr3_2:45279803-45279822	Msa0407420:intron	10.0%
!!	ATTAATATTTATTGTTCATA+AGG	-	chr3_2:45279802-45279821	Msa0407420:intron	10.0%
!!	TTAATATTTATTGTTCATAA+GGG	-	chr3_2:45279803-45279822	Msa0407420:intron	10.0%
!!!	GATATTAATAATTTTTGTGA+TGG	+	chr3_2:45279764-45279783	None:intergenic	15.0%
!!!	TATTAATATATTTTGTTGAG+TGG	+	chr3_2:45279789-45279808	None:intergenic	15.0%
!!	TAATCAAATAGATAATATAG+AGG	+	chr3_2:45279938-45279957	None:intergenic	15.0%
!!	TAATCAAATTAAGTTTAAGA+TGG	+	chr3_2:45280135-45280154	None:intergenic	15.0%
!!!	ACATGTTTTTATTTTTTTGA+AGG	+	chr3_2:45280211-45280230	None:intergenic	15.0%
!!	TCAAAAAAATAAAAACATGT+TGG	-	chr3_2:45280211-45280230	Msa0407420:CDS	15.0%
!!!	GATATTAATAATTTTTGTGA+TGG	+	chr3_2:45279764-45279783	None:intergenic	15.0%
!!!	TATTAATATATTTTGTTGAG+TGG	+	chr3_2:45279789-45279808	None:intergenic	15.0%
!!	TAATCAAATAGATAATATAG+AGG	+	chr3_2:45279938-45279957	None:intergenic	15.0%
!!	TAATCAAATTAAGTTTAAGA+TGG	+	chr3_2:45280135-45280154	None:intergenic	15.0%
!!!	ACATGTTTTTATTTTTTTGA+AGG	+	chr3_2:45280211-45280230	None:intergenic	15.0%
!!	TCAAAAAAATAAAAACATGT+TGG	-	chr3_2:45280211-45280230	Msa0407420:CDS	15.0%
!!!	TACCTTATATTTTGATATCT+TGG	+	chr3_2:45279559-45279578	None:intergenic	20.0%
!!	AAAGAATAGTGAATAAGTTT+GGG	+	chr3_2:45279711-45279730	None:intergenic	20.0%
!!!	TACCTTATATTTTGATATCT+TGG	+	chr3_2:45279559-45279578	None:intergenic	20.0%
!!	AAAGAATAGTGAATAAGTTT+GGG	+	chr3_2:45279711-45279730	None:intergenic	20.0%
!	GTCCAAGATATCAAAATATA+AGG	-	chr3_2:45279554-45279573	Msa0407420:intron	25.0%
!	ATAGTTTAACGAATTACCTT+AGG	+	chr3_2:45279685-45279704	None:intergenic	25.0%
!	GAAAGAATAGTGAATAAGTT+TGG	+	chr3_2:45279712-45279731	None:intergenic	25.0%
!!!	TCAAGCTTTTTTTTTGTTGA+AGG	-	chr3_2:45279997-45280016	Msa0407420:intron	25.0%
!	TAGTTAACATGAAAACATGT+TGG	-	chr3_2:45280183-45280202	Msa0407420:CDS	25.0%
!	GTCCAAGATATCAAAATATA+AGG	-	chr3_2:45279554-45279573	Msa0407420:intron	25.0%
!	ATAGTTTAACGAATTACCTT+AGG	+	chr3_2:45279685-45279704	None:intergenic	25.0%
!	GAAAGAATAGTGAATAAGTT+TGG	+	chr3_2:45279712-45279731	None:intergenic	25.0%
!!!	TCAAGCTTTTTTTTTGTTGA+AGG	-	chr3_2:45279997-45280016	Msa0407420:intron	25.0%
!	TAGTTAACATGAAAACATGT+TGG	-	chr3_2:45280183-45280202	Msa0407420:CDS	25.0%
!	TGTTGTTTGGTCTCATATAT+TGG	+	chr3_2:45279462-45279481	None:intergenic	30.0%
	TAATTACTAGGTCTCATCAT+TGG	+	chr3_2:45279526-45279545	None:intergenic	30.0%
	ATGATGAGACCTAGTAATTA+CGG	-	chr3_2:45279526-45279545	Msa0407420:intron	30.0%
!!!	CTTAAGCACTTTAGTTTTAG+TGG	+	chr3_2:45280321-45280340	None:intergenic	30.0%
	TAGGTTACGTTTACAAAGTA+AGG	+	chr3_2:45280353-45280372	None:intergenic	30.0%
!	TGTTGTTTGGTCTCATATAT+TGG	+	chr3_2:45279462-45279481	None:intergenic	30.0%
	TAATTACTAGGTCTCATCAT+TGG	+	chr3_2:45279526-45279545	None:intergenic	30.0%
	ATGATGAGACCTAGTAATTA+CGG	-	chr3_2:45279526-45279545	Msa0407420:intron	30.0%
!!!	CTTAAGCACTTTAGTTTTAG+TGG	+	chr3_2:45280321-45280340	None:intergenic	30.0%
	TAGGTTACGTTTACAAAGTA+AGG	+	chr3_2:45280353-45280372	None:intergenic	30.0%
	AGCAGCAAAAAGAATAGTCA+TGG	-	chr3_2:45279360-45279379	Msa0407420:CDS	35.0%
	GCAGCAAAAAGAATAGTCAT+GGG	-	chr3_2:45279361-45279380	Msa0407420:CDS	35.0%
	AATGGATGTCTTCAAAGATG+AGG	-	chr3_2:45279391-45279410	Msa0407420:CDS	35.0%
	ACAATCAGAACAAACCCTAA+CGG	+	chr3_2:45279620-45279639	None:intergenic	35.0%
!	TTAAAGTGTTTGAGTGACCT+TGG	-	chr3_2:45279735-45279754	Msa0407420:intron	35.0%
!!!	AATTTTTGTGATGGACACCA+AGG	+	chr3_2:45279755-45279774	None:intergenic	35.0%
	CATAAGGGATGTGTCAAATA+TGG	-	chr3_2:45279818-45279837	Msa0407420:intron	35.0%
	AGCAGCAAAAAGAATAGTCA+TGG	-	chr3_2:45279360-45279379	Msa0407420:CDS	35.0%
	GCAGCAAAAAGAATAGTCAT+GGG	-	chr3_2:45279361-45279380	Msa0407420:CDS	35.0%
	AATGGATGTCTTCAAAGATG+AGG	-	chr3_2:45279391-45279410	Msa0407420:CDS	35.0%
	ACAATCAGAACAAACCCTAA+CGG	+	chr3_2:45279620-45279639	None:intergenic	35.0%
!	TTAAAGTGTTTGAGTGACCT+TGG	-	chr3_2:45279735-45279754	Msa0407420:intron	35.0%
!!!	AATTTTTGTGATGGACACCA+AGG	+	chr3_2:45279755-45279774	None:intergenic	35.0%
	CATAAGGGATGTGTCAAATA+TGG	-	chr3_2:45279818-45279837	Msa0407420:intron	35.0%
	ATAGTCATGGGTCTGAGAAA+TGG	-	chr3_2:45279373-45279392	Msa0407420:CDS	40.0%
	GGTCTCATATATTGGAGTTG+TGG	+	chr3_2:45279454-45279473	None:intergenic	40.0%
!!	CTTGATAGCTTTGTCAGTAG+TGG	+	chr3_2:45279494-45279513	None:intergenic	40.0%
!	AGTTACTACTAGGGCTTGTT+TGG	+	chr3_2:45279585-45279604	None:intergenic	40.0%
	TGTTACCGCAGTTACTACTA+GGG	+	chr3_2:45279594-45279613	None:intergenic	40.0%
	TTGTTACCGCAGTTACTACT+AGG	+	chr3_2:45279595-45279614	None:intergenic	40.0%
	GAATTACCTTAGGACCCATA+GGG	+	chr3_2:45279675-45279694	None:intergenic	40.0%
	TTTGCAATGCTTGTGGAATC+AGG	-	chr3_2:45280243-45280262	Msa0407420:intron	40.0%
	ATAGTCATGGGTCTGAGAAA+TGG	-	chr3_2:45279373-45279392	Msa0407420:CDS	40.0%
	GGTCTCATATATTGGAGTTG+TGG	+	chr3_2:45279454-45279473	None:intergenic	40.0%
!!	CTTGATAGCTTTGTCAGTAG+TGG	+	chr3_2:45279494-45279513	None:intergenic	40.0%
!	AGTTACTACTAGGGCTTGTT+TGG	+	chr3_2:45279585-45279604	None:intergenic	40.0%
	TGTTACCGCAGTTACTACTA+GGG	+	chr3_2:45279594-45279613	None:intergenic	40.0%
	TTGTTACCGCAGTTACTACT+AGG	+	chr3_2:45279595-45279614	None:intergenic	40.0%
	GAATTACCTTAGGACCCATA+GGG	+	chr3_2:45279675-45279694	None:intergenic	40.0%
	TTTGCAATGCTTGTGGAATC+AGG	-	chr3_2:45280243-45280262	Msa0407420:intron	40.0%
	GTGGCTGCAATACTGTTGTT+TGG	+	chr3_2:45279475-45279494	None:intergenic	45.0%
!	GGACTAGTGCCGTAATTACT+AGG	+	chr3_2:45279538-45279557	None:intergenic	45.0%
	ACAAGCCCTAGTAGTAACTG+CGG	-	chr3_2:45279586-45279605	Msa0407420:intron	45.0%
	CGAATTACCTTAGGACCCAT+AGG	+	chr3_2:45279676-45279695	None:intergenic	45.0%
!	CAGTCACTTTGCAATGCTTG+TGG	-	chr3_2:45280236-45280255	Msa0407420:intron	45.0%
	TTGTGGAATCAGGCAGAGAA+AGG	-	chr3_2:45280253-45280272	Msa0407420:intron	45.0%
	AGTGGATGTAGCCAATCCAT+TGG	+	chr3_2:45280303-45280322	None:intergenic	45.0%
	GTGGCTGCAATACTGTTGTT+TGG	+	chr3_2:45279475-45279494	None:intergenic	45.0%
!	GGACTAGTGCCGTAATTACT+AGG	+	chr3_2:45279538-45279557	None:intergenic	45.0%
	ACAAGCCCTAGTAGTAACTG+CGG	-	chr3_2:45279586-45279605	Msa0407420:intron	45.0%
	CGAATTACCTTAGGACCCAT+AGG	+	chr3_2:45279676-45279695	None:intergenic	45.0%
!	CAGTCACTTTGCAATGCTTG+TGG	-	chr3_2:45280236-45280255	Msa0407420:intron	45.0%
	TTGTGGAATCAGGCAGAGAA+AGG	-	chr3_2:45280253-45280272	Msa0407420:intron	45.0%
	AGTGGATGTAGCCAATCCAT+TGG	+	chr3_2:45280303-45280322	None:intergenic	45.0%
	ACTGCGGTAACAACACCGTT+AGG	-	chr3_2:45279602-45279621	Msa0407420:intron	50.0%
	CTGCGGTAACAACACCGTTA+GGG	-	chr3_2:45279603-45279622	Msa0407420:intron	50.0%
	ACTCCTCCAAAGTGGGGTAT+GGG	+	chr3_2:45279650-45279669	None:intergenic	50.0%
	TCAGGCAGAGAAAGGCAAGA+AGG	-	chr3_2:45280261-45280280	Msa0407420:intron	50.0%
	CAGGCAGAGAAAGGCAAGAA+GGG	-	chr3_2:45280262-45280281	Msa0407420:intron	50.0%
	ACTGCGGTAACAACACCGTT+AGG	-	chr3_2:45279602-45279621	Msa0407420:intron	50.0%
	CTGCGGTAACAACACCGTTA+GGG	-	chr3_2:45279603-45279622	Msa0407420:intron	50.0%
	ACTCCTCCAAAGTGGGGTAT+GGG	+	chr3_2:45279650-45279669	None:intergenic	50.0%
	TCAGGCAGAGAAAGGCAAGA+AGG	-	chr3_2:45280261-45280280	Msa0407420:intron	50.0%
	CAGGCAGAGAAAGGCAAGAA+GGG	-	chr3_2:45280262-45280281	Msa0407420:intron	50.0%
	GTGCATCCCATACCCCACTT+TGG	-	chr3_2:45279641-45279660	Msa0407420:intron	55.0%
	CATCCCATACCCCACTTTGG+AGG	-	chr3_2:45279644-45279663	Msa0407420:intron	55.0%
	CACTCCTCCAAAGTGGGGTA+TGG	+	chr3_2:45279651-45279670	None:intergenic	55.0%
!	CATACCCCACTTTGGAGGAG+TGG	-	chr3_2:45279649-45279668	Msa0407420:intron	55.0%
	TAGGGCCACTCCTCCAAAGT+GGG	+	chr3_2:45279657-45279676	None:intergenic	55.0%
	ATAGGGCCACTCCTCCAAAG+TGG	+	chr3_2:45279658-45279677	None:intergenic	55.0%
!	ACTTTGGAGGAGTGGCCCTA+TGG	-	chr3_2:45279657-45279676	Msa0407420:intron	55.0%
!	CTTTGGAGGAGTGGCCCTAT+GGG	-	chr3_2:45279658-45279677	Msa0407420:intron	55.0%
	GAGAAAGGCAAGAAGGGCCA+TGG	-	chr3_2:45280268-45280287	Msa0407420:intron	55.0%
	TCCATTGGCAGCTTCAGCCA+TGG	+	chr3_2:45280288-45280307	None:intergenic	55.0%
	GGCTGAAGCTGCCAATGGAT+TGG	-	chr3_2:45280289-45280308	Msa0407420:intron	55.0%
	GTGCATCCCATACCCCACTT+TGG	-	chr3_2:45279641-45279660	Msa0407420:intron	55.0%
	CATCCCATACCCCACTTTGG+AGG	-	chr3_2:45279644-45279663	Msa0407420:intron	55.0%
	CACTCCTCCAAAGTGGGGTA+TGG	+	chr3_2:45279651-45279670	None:intergenic	55.0%
!	CATACCCCACTTTGGAGGAG+TGG	-	chr3_2:45279649-45279668	Msa0407420:intron	55.0%
	TAGGGCCACTCCTCCAAAGT+GGG	+	chr3_2:45279657-45279676	None:intergenic	55.0%
	ATAGGGCCACTCCTCCAAAG+TGG	+	chr3_2:45279658-45279677	None:intergenic	55.0%
!	ACTTTGGAGGAGTGGCCCTA+TGG	-	chr3_2:45279657-45279676	Msa0407420:intron	55.0%
!	CTTTGGAGGAGTGGCCCTAT+GGG	-	chr3_2:45279658-45279677	Msa0407420:intron	55.0%
	GAGAAAGGCAAGAAGGGCCA+TGG	-	chr3_2:45280268-45280287	Msa0407420:intron	55.0%
	TCCATTGGCAGCTTCAGCCA+TGG	+	chr3_2:45280288-45280307	None:intergenic	55.0%
	GGCTGAAGCTGCCAATGGAT+TGG	-	chr3_2:45280289-45280308	Msa0407420:intron	55.0%
	AGGGCCACTCCTCCAAAGTG+GGG	+	chr3_2:45279656-45279675	None:intergenic	60.0%
	GAGTGGCCCTATGGGTCCTA+AGG	-	chr3_2:45279666-45279685	Msa0407420:intron	60.0%
	GCCATGGCTGAAGCTGCCAA+TGG	-	chr3_2:45280284-45280303	Msa0407420:intron	60.0%
	AGGGCCACTCCTCCAAAGTG+GGG	+	chr3_2:45279656-45279675	None:intergenic	60.0%
	GAGTGGCCCTATGGGTCCTA+AGG	-	chr3_2:45279666-45279685	Msa0407420:intron	60.0%
	GCCATGGCTGAAGCTGCCAA+TGG	-	chr3_2:45280284-45280303	Msa0407420:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	45279351	45280373	45279351	ID=Msa0407420;Name=Msa0407420
chr3_2	mRNA	45279351	45280373	45279351	ID=Msa0407420-mRNA-1;Parent=Msa0407420;Name=Msa0407420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|0.5\|0.33\|3\|0\|133
chr3_2	exon	45280312	45280373	45280312	ID=Msa0407420-mRNA-1:exon:8772;Parent=Msa0407420-mRNA-1
chr3_2	exon	45280037	45280241	45280037	ID=Msa0407420-mRNA-1:exon:8771;Parent=Msa0407420-mRNA-1
chr3_2	exon	45279351	45279485	45279351	ID=Msa0407420-mRNA-1:exon:8770;Parent=Msa0407420-mRNA-1
chr3_2	CDS	45280312	45280373	45280312	ID=Msa0407420-mRNA-1:cds;Parent=Msa0407420-mRNA-1
chr3_2	CDS	45280037	45280241	45280037	ID=Msa0407420-mRNA-1:cds;Parent=Msa0407420-mRNA-1
chr3_2	CDS	45279351	45279485	45279351	ID=Msa0407420-mRNA-1:cds;Parent=Msa0407420-mRNA-1

Gene Sequence

>Msa0407420

ATGGAAGATAGCAGCAAAAAGAATAGTCATGGGTCTGAGAAATGGATGTCTTCAAAGATGAGTATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAGACCTAGTAATTACGGCACTAGTCCAAGATATCAAAATATAAGGTACAACCAAACAAGCCCTAGTAGTAACTGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTGCATCCCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGATTGGCTACATCCACTAAAACTAAAGTGCTTAAGATAAATAAGCCTTACTTTGTAAACGTAACCTAG

Protein sequence

>Msa0407420

MEDSSKKNSHGSEKWMSSKMSIAATTDKAIKTTTPMMRPSNYGTSPRYQNIRYNQTSPSSNCGNNTVRVCSDCSASHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSTKTKVLKINKPYFVNVT*