AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0407490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0407490 MtrunA17_Chr3g0098251 79.144 187 22 3 10 188 1 178 3.42e-104 301
Msa0407490 MtrunA17_Chr8g0360671 74.074 135 12 3 62 188 40 159 1.49e-63 196
Msa0407490 MtrunA17_Chr4g0063401 54.146 205 60 7 16 187 44 247 5.35e-63 197
Msa0407490 MtrunA17_Chr4g0063361 47.847 209 89 5 5 193 39 247 3.39e-57 183
Msa0407490 MtrunA17_Chr4g0063391 44.811 212 86 6 1 186 1 207 1.08e-49 163
Msa0407490 MtrunA17_Chr4g0063371 38.828 273 98 10 1 247 1 230 1.15e-42 145
Msa0407490 MtrunA17_Chr8g0366501 28.276 290 129 9 37 248 86 374 1.73e-26 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0407490 AT3G19360.1 37.324 284 114 8 32 251 93 376 4.88e-47 161
Msa0407490 AT3G19360.2 37.324 284 114 8 32 251 93 376 4.88e-47 161
Msa0407490 AT1G32360.1 29.139 302 120 10 37 248 85 382 4.74e-21 91.7
Msa0407490 AT2G35430.1 28.814 236 92 9 38 248 66 250 6.40e-14 70.1

Find 80 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAATGGATGCAGTTTC+TGG 0.193826 3_2:+45537508 Msa0407490:CDS
CGGAGATGGTTCTAATAATT+TGG 0.195023 3_2:+45537685 Msa0407490:CDS
ATTCTTGCCCTCTTGTTCTT+TGG 0.226992 3_2:-45537284 None:intergenic
TTTGCCACACCTAGACTTAC+TGG 0.306973 3_2:-45542577 None:intergenic
AAACAGGGCGTTGTCCCTTT+GGG 0.322625 3_2:+45537780 Msa0407490:CDS
TCCTATGCACTTGGCAAGTT+GGG 0.333919 3_2:-45542703 None:intergenic
CAAACAGGGCGTTGTCCCTT+TGG 0.339272 3_2:+45537779 Msa0407490:CDS
ATAGGCTTAGGGATGATTCT+TGG 0.341417 3_2:+45537624 Msa0407490:intron
CTAATAATTTGGAAGGCAAT+AGG 0.358885 3_2:+45537696 Msa0407490:CDS
TGTCCCATGTGGCAGCAAAC+AGG 0.365446 3_2:+45537764 Msa0407490:CDS
TAAGGAAGCCATTGCCGAAT+TGG 0.366423 3_2:+45537462 Msa0407490:CDS
AGCCAACAAGGGGTACTTAC+TGG 0.377319 3_2:+45537729 Msa0407490:CDS
TTGCCACACCTAGACTTGTT+GGG 0.387975 3_2:-45538361 None:intergenic
TCGCCTGTTTCTTTGTTTGA+TGG 0.390448 3_2:-45537347 None:intergenic
TTTGCCACACCTAGACTTGT+TGG 0.401025 3_2:-45538362 None:intergenic
TTCCAGTAAGTACCCCTTGT+TGG 0.410071 3_2:-45537731 None:intergenic
CTCCTATGCACTTGGCAAGT+TGG 0.421161 3_2:-45542704 None:intergenic
ACCTAGACTTGTTGGGATGC+TGG 0.423276 3_2:-45538354 None:intergenic
ATGATATCGCTGTGGTGGTC+TGG 0.425060 3_2:-45537257 None:intergenic
CTTCCATCAAACAAAGAAAC+AGG 0.444809 3_2:+45537344 Msa0407490:CDS
AATGGTGAGGAATGTCCTTA+TGG 0.454214 3_2:+45537581 Msa0407490:CDS
GTTTCTTTGTTTGATGGAAG+AGG 0.456265 3_2:-45537341 None:intergenic
CGCCCTGTTTGCTGCCACAT+GGG 0.456421 3_2:-45537767 None:intergenic
CACTATGCTCACGGAGAAGC+AGG 0.461007 3_2:+45537812 Msa0407490:CDS
CAGAAAATCATTCACAAGAT+GGG 0.463529 3_2:+45537539 Msa0407490:CDS
TCAATGCTATATATGCTGAT+TGG 0.472915 3_2:+45542656 Msa0407490:CDS
TCAGAAAATCATTCACAAGA+TGG 0.481007 3_2:+45537538 Msa0407490:CDS
CTAAGAAGAAGCGTTTACTT+TGG 0.481385 3_2:+45542614 Msa0407490:CDS
CTCACGGGGTTGGTGAGATA+AGG 0.482058 3_2:+45537444 Msa0407490:CDS
TCTAGGTGTGGCAAAGGAAG+TGG 0.482685 3_2:+45542585 Msa0407490:CDS
AAACAACACTTGTCACCATA+AGG 0.482738 3_2:-45537596 None:intergenic
TTTCTTTGTTTGATGGAAGA+GGG 0.487321 3_2:-45537340 None:intergenic
CCAGCTAGCTCCTTCCAATT+CGG 0.489768 3_2:-45537476 None:intergenic
AGTAAACGCTTCTTCTTAGC+CGG 0.491669 3_2:-45542610 None:intergenic
TAGGTACAATGTTCACCTTT+CGG 0.492110 3_2:-45537419 None:intergenic
CTGGCTCTCGCAGCAAGGAA+TGG 0.502304 3_2:+45537495 Msa0407490:CDS
ACCTAGACTTACTGGGATGC+TGG 0.504675 3_2:-45542569 None:intergenic
AACATTGTACCTATGCTCAC+GGG 0.508915 3_2:+45537429 Msa0407490:CDS
GATGCTGGTAGGTGCATCAT+TGG 0.510548 3_2:-45542554 None:intergenic
CCGAATTGGAAGGAGCTAGC+TGG 0.513357 3_2:+45537476 Msa0407490:CDS
AGCTCCTTCCAATTCGGCAA+TGG 0.514329 3_2:-45537470 None:intergenic
GATGGTTCTAATAATTTGGA+AGG 0.521303 3_2:+45537689 Msa0407490:CDS
GTCCCATGTGGCAGCAAACA+GGG 0.525337 3_2:+45537765 Msa0407490:CDS
ACGCCCTGTTTGCTGCCACA+TGG 0.531296 3_2:-45537768 None:intergenic
GGTCTGTGAACAAGCCAACA+AGG 0.539167 3_2:+45537717 Msa0407490:CDS
TGTACCTATGCTCACGGGGT+TGG 0.546278 3_2:+45537434 Msa0407490:CDS
TAGTGACAGTCGTCCCCAAA+GGG 0.547571 3_2:-45537794 None:intergenic
AACAGGGCGTTGTCCCTTTG+GGG 0.550922 3_2:+45537781 Msa0407490:CDS
TGTGGCAAAGGAAGTGGAGC+CGG 0.553955 3_2:+45542591 Msa0407490:CDS
TTGCCACACCTAGACTTACT+GGG 0.557663 3_2:-45542576 None:intergenic
AGGTTTGGTAATTGTCCGAA+AGG 0.564006 3_2:+45537404 Msa0407490:intron
ACTTCCAATGCTTAATGCAC+AGG 0.564321 3_2:-45537660 None:intergenic
GCATTAAGCATTGGAAGTAT+CGG 0.572339 3_2:+45537665 Msa0407490:CDS
ACCAGCATCCCAACAAGTCT+AGG 0.572783 3_2:+45538353 Msa0407490:CDS
GAACATTGTACCTATGCTCA+CGG 0.579167 3_2:+45537428 Msa0407490:CDS
ACTCAAGTCTCCTATGCACT+TGG 0.585853 3_2:-45542712 None:intergenic
GAGTCCTGTGCATTAAGCAT+TGG 0.586238 3_2:+45537656 Msa0407490:CDS
AGCATTGGAAGTATCGGAGA+TGG 0.590771 3_2:+45537671 Msa0407490:CDS
GAAGCCATTGCCGAATTGGA+AGG 0.591683 3_2:+45537466 Msa0407490:CDS
TCATGTTTCCAAAGAACAAG+AGG 0.592600 3_2:+45537276 Msa0407490:CDS
AGAAAATCATTCACAAGATG+GGG 0.602501 3_2:+45537540 Msa0407490:CDS
AGTAAGTCTAGGTGTGGCAA+AGG 0.602677 3_2:+45542579 Msa0407490:CDS
GTCTGTGAACAAGCCAACAA+GGG 0.606657 3_2:+45537718 Msa0407490:CDS
GGCAAGTTGGGATGAACAAG+AGG 0.607119 3_2:-45542691 None:intergenic
GCTAGCTGGCTCTCGCAGCA+AGG 0.609767 3_2:+45537490 Msa0407490:CDS
AGACTTACTGGGATGCTGGT+AGG 0.616674 3_2:-45542565 None:intergenic
CTCACCAACCCCGTGAGCAT+AGG 0.617079 3_2:-45537438 None:intergenic
TCCCAACTTGCCAAGTGCAT+AGG 0.618646 3_2:+45542702 Msa0407490:CDS
ACCAGCATCCCAGTAAGTCT+AGG 0.622315 3_2:+45542568 Msa0407490:CDS
GACGACTGTCACTATGCTCA+CGG 0.626699 3_2:+45537803 Msa0407490:CDS
ATAGTGACAGTCGTCCCCAA+AGG 0.638083 3_2:-45537795 None:intergenic
CATGTTTCCAAAGAACAAGA+GGG 0.650159 3_2:+45537277 Msa0407490:CDS
CATCCCAGTAAGTCTAGGTG+TGG 0.656724 3_2:+45542573 Msa0407490:CDS
CAAGAAATACTACAATGGTG+AGG 0.666991 3_2:+45537568 Msa0407490:CDS
CTATGCAAGAAATACTACAA+TGG 0.669884 3_2:+45537563 Msa0407490:CDS
GAAACATGATATCGCTGTGG+TGG 0.671066 3_2:-45537262 None:intergenic
TCTGTGAACAAGCCAACAAG+GGG 0.674336 3_2:+45537719 Msa0407490:CDS
ACATTGTACCTATGCTCACG+GGG 0.692970 3_2:+45537430 Msa0407490:CDS
TTGGAAACATGATATCGCTG+TGG 0.734366 3_2:-45537265 None:intergenic
AGATTAAGCTGTGTCCCATG+TGG 0.762737 3_2:+45537753 Msa0407490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTAAAAAAAATTACAAGA+CGG + chr3_2:45538233-45538252 Msa0407490:intron 15.0%
!! TTAATACTATATATGTTGAT+TGG + chr3_2:45538441-45538460 Msa0407490:intron 15.0%
!!! TGTTAATTGTAATAGTTTTA+TGG + chr3_2:45538569-45538588 Msa0407490:intron 15.0%
!!! GAATTACATTTTGTATAATA+TGG + chr3_2:45538784-45538803 Msa0407490:intron 15.0%
!! TTGTTTAAGGAAAAAATAAT+TGG + chr3_2:45540019-45540038 Msa0407490:intron 15.0%
!! CAATCAAATAAAATAATTGT+TGG - chr3_2:45541499-45541518 None:intergenic 15.0%
!! ATTTGATTGTCTTATACATT+TGG + chr3_2:45538757-45538776 Msa0407490:intron 20.0%
!!! AGATTTGAGAATTTTTGTTT+TGG - chr3_2:45538915-45538934 None:intergenic 20.0%
!! ATTCTCAAATCTTAAAACTT+TGG + chr3_2:45538923-45538942 Msa0407490:intron 20.0%
!! TTCTCAAATCTTAAAACTTT+GGG + chr3_2:45538924-45538943 Msa0407490:intron 20.0%
!!! TAAGAAGTAGTTTTGAAAAA+TGG - chr3_2:45539129-45539148 None:intergenic 20.0%
!! CATTCAAAATCAACTTTATT+GGG + chr3_2:45539432-45539451 Msa0407490:intron 20.0%
!!! AAAGATCAAAACTTGTTATT+TGG + chr3_2:45539575-45539594 Msa0407490:intron 20.0%
!!! AAGATCAAAACTTGTTATTT+GGG + chr3_2:45539576-45539595 Msa0407490:intron 20.0%
!!! TTTTCCTTATAAAAACATGT+TGG + chr3_2:45539898-45539917 Msa0407490:intron 20.0%
!!! CAACTGTTGATAATTTTATT+TGG + chr3_2:45540254-45540273 Msa0407490:intron 20.0%
!!! TTTTCCATCTAGATTTTTTA+AGG + chr3_2:45540567-45540586 Msa0407490:intron 20.0%
!!! GATTTAGTTTTCAATAGTTT+AGG - chr3_2:45541051-45541070 None:intergenic 20.0%
!!! TGATTTTATATCATCAAATG+TGG + chr3_2:45541266-45541285 Msa0407490:intron 20.0%
!!! TTTTTACAATATGCATATAC+AGG - chr3_2:45542436-45542455 None:intergenic 20.0%
!! TTATAACAATCAAAACTGTT+TGG + chr3_2:45538256-45538275 Msa0407490:intron 20.0%
!! TTTAATTTCCACCAAAGTAA+AGG - chr3_2:45538413-45538432 None:intergenic 25.0%
! TTCATGCTAAAAGACAATAA+AGG + chr3_2:45539023-45539042 Msa0407490:intron 25.0%
! TCATGCTAAAAGACAATAAA+GGG + chr3_2:45539024-45539043 Msa0407490:intron 25.0%
!!! AAATACCATCTTTGAAATGA+AGG + chr3_2:45539259-45539278 Msa0407490:intron 25.0%
!!! CCAATAAAGTTGATTTTGAA+TGG - chr3_2:45539434-45539453 None:intergenic 25.0%
! CCATTCAAAATCAACTTTAT+TGG + chr3_2:45539431-45539450 Msa0407490:intron 25.0%
!! TTCCAAACTGATTCATATTT+GGG - chr3_2:45539506-45539525 None:intergenic 25.0%
!!! AGATCAAAACTTGTTATTTG+GGG + chr3_2:45539577-45539596 Msa0407490:intron 25.0%
!!! TTGACCAACATGTTTTTATA+AGG - chr3_2:45539905-45539924 None:intergenic 25.0%
!!! TGTTTTAGCTAGCATATATA+AGG + chr3_2:45539988-45540007 Msa0407490:intron 25.0%
! CTAGCATATATAAGGATTTA+AGG + chr3_2:45539996-45540015 Msa0407490:intron 25.0%
!! TAAGGATTTAAGGTTGTTTA+AGG + chr3_2:45540006-45540025 Msa0407490:intron 25.0%
! TACAAACTTGTATCAGAAAA+AGG - chr3_2:45540544-45540563 None:intergenic 25.0%
! TTTATATCATCAAATGTGGA+TGG + chr3_2:45541270-45541289 Msa0407490:intron 25.0%
! ACATCATTTCTATCATAAAG+TGG - chr3_2:45541336-45541355 None:intergenic 25.0%
!!! TATATGAAGGTACTAAACTT+AGG + chr3_2:45541590-45541609 Msa0407490:intron 25.0%
!!! ATATGAAGGTACTAAACTTA+GGG + chr3_2:45541591-45541610 Msa0407490:intron 25.0%
! AAAGTGAATGAAGCAAATAT+AGG + chr3_2:45541639-45541658 Msa0407490:intron 25.0%
! TATGTTTGACTGTAACATTA+TGG - chr3_2:45542304-45542323 None:intergenic 25.0%
! TTTCTTTGTTTGATGGAAGA+GGG - chr3_2:45537343-45537362 None:intergenic 30.0%
! ATTTGTCATAAGTTCAGGTT+TGG + chr3_2:45537389-45537408 Msa0407490:intron 30.0%
TCAGAAAATCATTCACAAGA+TGG + chr3_2:45537538-45537557 Msa0407490:CDS 30.0%
CAGAAAATCATTCACAAGAT+GGG + chr3_2:45537539-45537558 Msa0407490:CDS 30.0%
AGAAAATCATTCACAAGATG+GGG + chr3_2:45537540-45537559 Msa0407490:CDS 30.0%
CTATGCAAGAAATACTACAA+TGG + chr3_2:45537563-45537582 Msa0407490:CDS 30.0%
!!! ACAAGTGTTGTTTTCTTCAT+AGG + chr3_2:45537606-45537625 Msa0407490:intron 30.0%
! TTGTTTTCTTCATAGGCTTA+GGG + chr3_2:45537613-45537632 Msa0407490:intron 30.0%
!! GATGGTTCTAATAATTTGGA+AGG + chr3_2:45537689-45537708 Msa0407490:CDS 30.0%
CTAATAATTTGGAAGGCAAT+AGG + chr3_2:45537696-45537715 Msa0407490:CDS 30.0%
TTATAGTGTTTGATTGTGTG+TGG + chr3_2:45537880-45537899 Msa0407490:intron 30.0%
! GTGTGTGATATTTTCATGTT+TGG + chr3_2:45537914-45537933 Msa0407490:intron 30.0%
ATGAATGAACTAACTTAGGA+GGG - chr3_2:45537958-45537977 None:intergenic 30.0%
TCTGATGAATGAACTAACTT+AGG - chr3_2:45537962-45537981 None:intergenic 30.0%
GAGTAAATCATACATACAAG+TGG - chr3_2:45538011-45538030 None:intergenic 30.0%
TTGTTAAATTGTCGCCATAA+CGG + chr3_2:45538048-45538067 Msa0407490:intron 30.0%
AACAGTTAGAAGAAGATACA+AGG - chr3_2:45538285-45538304 None:intergenic 30.0%
! TGGATTTCAGAAACTTTTTG+TGG + chr3_2:45538633-45538652 Msa0407490:intron 30.0%
! GGATTTCAGAAACTTTTTGT+GGG + chr3_2:45538634-45538653 Msa0407490:intron 30.0%
ACATGAAACTTAGTCAACTT+AGG - chr3_2:45538998-45539017 None:intergenic 30.0%
AAAGACAATAAAGGGCAATT+TGG + chr3_2:45539032-45539051 Msa0407490:intron 30.0%
AAGACAATAAAGGGCAATTT+GGG + chr3_2:45539033-45539052 Msa0407490:intron 30.0%
! GTTGCTTTGATTTCTTAGTA+TGG - chr3_2:45539107-45539126 None:intergenic 30.0%
GGTTGTTCATGATTATTGAT+GGG - chr3_2:45539233-45539252 None:intergenic 30.0%
TGGTTGTTCATGATTATTGA+TGG - chr3_2:45539234-45539253 None:intergenic 30.0%
CAATAATCATGAACAACCAT+TGG + chr3_2:45539235-45539254 Msa0407490:intron 30.0%
! TCAAAGATGGTATTTTCCAA+TGG - chr3_2:45539254-45539273 None:intergenic 30.0%
! AAATGAGCATTTCTGAAAGT+AGG - chr3_2:45539329-45539348 None:intergenic 30.0%
ATAAAAACAGGTGATGAAGA+TGG - chr3_2:45539398-45539417 None:intergenic 30.0%
TCAAAATCAACTTTATTGGG+TGG + chr3_2:45539435-45539454 Msa0407490:intron 30.0%
AACCCAAATATGAATCAGTT+TGG + chr3_2:45539501-45539520 Msa0407490:intron 30.0%
! CTTCCAAACTGATTCATATT+TGG - chr3_2:45539507-45539526 None:intergenic 30.0%
!! AGTTTTGATCTTTCTTGATG+CGG - chr3_2:45539568-45539587 None:intergenic 30.0%
! AATACCTTTGTGTTTTCCTT+TGG + chr3_2:45539626-45539645 Msa0407490:intron 30.0%
TCTTCAAGTGGTTTGAAAAT+AGG - chr3_2:45539713-45539732 None:intergenic 30.0%
TTCATTTCTTGATCTTCAAG+TGG - chr3_2:45539725-45539744 None:intergenic 30.0%
TGAAGATCAAGAAATGAAAG+AGG + chr3_2:45539727-45539746 Msa0407490:intron 30.0%
ATGGATACTTTCATTGGTAA+AGG + chr3_2:45539824-45539843 Msa0407490:intron 30.0%
TATATGCTAGCTAAAACAGT+TGG - chr3_2:45539986-45540005 None:intergenic 30.0%
!! GGTTTGTTAAAATATCCTGT+TGG + chr3_2:45540040-45540059 Msa0407490:intron 30.0%
TTGTTAAAATATCCTGTTGG+TGG + chr3_2:45540043-45540062 Msa0407490:intron 30.0%
CAAACTTGAACCAAGTAAAA+GGG - chr3_2:45540109-45540128 None:intergenic 30.0%
!! CTTTTACTTGGTTCAAGTTT+GGG + chr3_2:45540108-45540127 Msa0407490:intron 30.0%
TCTTCATTATTGACCAATCT+GGG - chr3_2:45540166-45540185 None:intergenic 30.0%
AAGACCATGTATTATTGAAG+TGG + chr3_2:45540182-45540201 Msa0407490:intron 30.0%
! AATGCCACTTCAATAATACA+TGG - chr3_2:45540189-45540208 None:intergenic 30.0%
TGTATTATTGAAGTGGCATT+TGG + chr3_2:45540189-45540208 Msa0407490:intron 30.0%
! CTTTGAAAATTGACAATGTG+AGG + chr3_2:45540218-45540237 Msa0407490:intron 30.0%
TTATCAGCGTATCTAACATA+AGG - chr3_2:45540283-45540302 None:intergenic 30.0%
! TTTGCCGTTTATGAAAGATT+CGG + chr3_2:45540336-45540355 Msa0407490:intron 30.0%
! ATCATCACTAGATTTTCCAA+TGG - chr3_2:45540746-45540765 None:intergenic 30.0%
TGATCGTTCAAAAACTAACA+AGG + chr3_2:45540762-45540781 Msa0407490:intron 30.0%
GATCGTTCAAAAACTAACAA+GGG + chr3_2:45540763-45540782 Msa0407490:intron 30.0%
AGTTTAGGAACAAAATCAGA+AGG - chr3_2:45540808-45540827 None:intergenic 30.0%
! GATTTTGTTCCTAAACTTGT+TGG + chr3_2:45540811-45540830 Msa0407490:intron 30.0%
! TGATGGTTTAAAATCTAGCA+AGG + chr3_2:45540864-45540883 Msa0407490:intron 30.0%
! GATGGTTTAAAATCTAGCAA+GGG + chr3_2:45540865-45540884 Msa0407490:intron 30.0%
TTCATACCATCTTGAACAAA+AGG - chr3_2:45540982-45541001 None:intergenic 30.0%
TTCAAGATGGTATGAAAGTT+GGG + chr3_2:45540986-45541005 Msa0407490:intron 30.0%
AGTTTAGGAATTGAAGCAAA+AGG - chr3_2:45541036-45541055 None:intergenic 30.0%
CAATCCTCAAAAGATATCAA+AGG - chr3_2:45541168-45541187 None:intergenic 30.0%
AATGATGTCAATGACATCAA+TGG + chr3_2:45541348-45541367 Msa0407490:intron 30.0%
ATGATGTCAATGACATCAAT+GGG + chr3_2:45541349-45541368 Msa0407490:intron 30.0%
ATTTCCATGTCTAGTGTAAA+GGG - chr3_2:45541387-45541406 None:intergenic 30.0%
AATTTCCATGTCTAGTGTAA+AGG - chr3_2:45541388-45541407 None:intergenic 30.0%
TGGAAATTGATCTTGAAAAC+AGG + chr3_2:45541400-45541419 Msa0407490:intron 30.0%
AAGCTTAAAGAAGCAAGATT+TGG + chr3_2:45541450-45541469 Msa0407490:intron 30.0%
CAATTGAAAGCTACTATCAT+AGG - chr3_2:45541548-45541567 None:intergenic 30.0%
! GTACTAGTCGATTTATATGA+AGG + chr3_2:45541577-45541596 Msa0407490:intron 30.0%
TAGGGTTATATTGTAGATCA+CGG + chr3_2:45541609-45541628 Msa0407490:intron 30.0%
ATAATAGCTATTGTAGCCTA+TGG - chr3_2:45541849-45541868 None:intergenic 30.0%
GCTACAATAGCTATTATATC+CGG + chr3_2:45541852-45541871 Msa0407490:intron 30.0%
TAGAACAGCATAATCATTAG+TGG - chr3_2:45541949-45541968 None:intergenic 30.0%
! ACAGCATTTTGTACTAGATA+GGG + chr3_2:45542070-45542089 Msa0407490:intron 30.0%
! TTGTACTAGATAGGGTATTA+TGG + chr3_2:45542078-45542097 Msa0407490:intron 30.0%
! TTTTCGCTATTTAACAAGAG+CGG + chr3_2:45542121-45542140 Msa0407490:intron 30.0%
TGTCTGACTCATCAATAATT+TGG + chr3_2:45542231-45542250 Msa0407490:intron 30.0%
AAGAGTCAGAAGAAGATATA+AGG - chr3_2:45542501-45542520 None:intergenic 30.0%
TCAATGCTATATATGCTGAT+TGG + chr3_2:45542656-45542675 Msa0407490:CDS 30.0%
TCATGTTTCCAAAGAACAAG+AGG + chr3_2:45537276-45537295 Msa0407490:CDS 35.0%
CATGTTTCCAAAGAACAAGA+GGG + chr3_2:45537277-45537296 Msa0407490:CDS 35.0%
! GTTTCTTTGTTTGATGGAAG+AGG - chr3_2:45537344-45537363 None:intergenic 35.0%
CTTCCATCAAACAAAGAAAC+AGG + chr3_2:45537344-45537363 Msa0407490:CDS 35.0%
CTCGTATTTGTCATAAGTTC+AGG + chr3_2:45537384-45537403 Msa0407490:intron 35.0%
TAGGTACAATGTTCACCTTT+CGG - chr3_2:45537422-45537441 None:intergenic 35.0%
CAAGAAATACTACAATGGTG+AGG + chr3_2:45537568-45537587 Msa0407490:CDS 35.0%
AAACAACACTTGTCACCATA+AGG - chr3_2:45537599-45537618 None:intergenic 35.0%
!! GTTGTTTTCTTCATAGGCTT+AGG + chr3_2:45537612-45537631 Msa0407490:intron 35.0%
!! GCATTAAGCATTGGAAGTAT+CGG + chr3_2:45537665-45537684 Msa0407490:CDS 35.0%
!! CGGAGATGGTTCTAATAATT+TGG + chr3_2:45537685-45537704 Msa0407490:CDS 35.0%
GAAGCAGGTAATGATAATAC+TGG + chr3_2:45537827-45537846 Msa0407490:intron 35.0%
TGAATGAACTAACTTAGGAG+GGG - chr3_2:45537957-45537976 None:intergenic 35.0%
GATGAATGAACTAACTTAGG+AGG - chr3_2:45537959-45537978 None:intergenic 35.0%
ACCAAATGTCTTACCAGTTT+CGG + chr3_2:45538316-45538335 Msa0407490:intron 35.0%
! AAGAGCACAAAATTCAACTC+AGG - chr3_2:45538516-45538535 None:intergenic 35.0%
!! TGAGTTGAATTTTGTGCTCT+TGG + chr3_2:45538515-45538534 Msa0407490:intron 35.0%
GAAACTCACTTCATTGGATA+AGG + chr3_2:45538537-45538556 Msa0407490:intron 35.0%
! AGAAACTTTTTGTGGGATTC+TGG + chr3_2:45538641-45538660 Msa0407490:intron 35.0%
! GAAACTTTTTGTGGGATTCT+GGG + chr3_2:45538642-45538661 Msa0407490:intron 35.0%
ACTACATTAGCATTACTCTG+AGG + chr3_2:45539070-45539089 Msa0407490:intron 35.0%
AGCTTCCTTCATTTCAAAGA+TGG - chr3_2:45539267-45539286 None:intergenic 35.0%
ATCATTTCACCTTCTACTCA+TGG + chr3_2:45539290-45539309 Msa0407490:intron 35.0%
!! ATTGAAGGTAAGTTGATGAG+TGG - chr3_2:45539375-45539394 None:intergenic 35.0%
!!! ATCACCTGTTTTTATTCCAG+AGG + chr3_2:45539403-45539422 Msa0407490:intron 35.0%
!!! TCACCTGTTTTTATTCCAGA+GGG + chr3_2:45539404-45539423 Msa0407490:intron 35.0%
!! AGTTAACCCATTTTGAGTGT+GGG - chr3_2:45539466-45539485 None:intergenic 35.0%
!! ACACTCAAAATGGGTTAACT+GGG + chr3_2:45539466-45539485 Msa0407490:intron 35.0%
GAATCAGTTTGGAAGAAAGT+TGG + chr3_2:45539512-45539531 Msa0407490:intron 35.0%
! TATTTGGGGTTGTTGACAAA+TGG + chr3_2:45539591-45539610 Msa0407490:intron 35.0%
TTCACCAAAGGAAAACACAA+AGG - chr3_2:45539633-45539652 None:intergenic 35.0%
!!! TTTGGAGGATGTTGTTGTTT+TGG + chr3_2:45539664-45539683 Msa0407490:intron 35.0%
!!! TTGGAGGATGTTGTTGTTTT+GGG + chr3_2:45539665-45539684 Msa0407490:intron 35.0%
AGATCAAGAAATGAAAGAGG+TGG + chr3_2:45539730-45539749 Msa0407490:intron 35.0%
AAGTGGATGGATACTTTCAT+TGG + chr3_2:45539818-45539837 Msa0407490:intron 35.0%
! ATGAAGCATTTCTTGCTACT+TGG + chr3_2:45539861-45539880 Msa0407490:intron 35.0%
CTAGCAAGATGAATAGCAAT+AGG - chr3_2:45539941-45539960 None:intergenic 35.0%
! ATTGCTATTCATCTTGCTAG+AGG + chr3_2:45539941-45539960 Msa0407490:intron 35.0%
! TTGCTATTCATCTTGCTAGA+GGG + chr3_2:45539942-45539961 Msa0407490:intron 35.0%
! TGTTCAATCACCCTTTTACT+TGG + chr3_2:45540096-45540115 Msa0407490:intron 35.0%
CCAAACTTGAACCAAGTAAA+AGG - chr3_2:45540110-45540129 None:intergenic 35.0%
!! CCTTTTACTTGGTTCAAGTT+TGG + chr3_2:45540107-45540126 Msa0407490:intron 35.0%
GTCTTCATTATTGACCAATC+TGG - chr3_2:45540167-45540186 None:intergenic 35.0%
GGCAAACAAATTTCATCCTT+TGG - chr3_2:45540322-45540341 None:intergenic 35.0%
TCCACCGAATCTTTCATAAA+CGG - chr3_2:45540343-45540362 None:intergenic 35.0%
TTGAGAGTTTCTGAGCTAAT+TGG + chr3_2:45540391-45540410 Msa0407490:intron 35.0%
TTGAATCTAGACACATAACC+AGG - chr3_2:45540484-45540503 None:intergenic 35.0%
! GCAATAATTTTCCCAAGCAA+TGG - chr3_2:45540518-45540537 None:intergenic 35.0%
CCAGCCTTAAAAAATCTAGA+TGG - chr3_2:45540574-45540593 None:intergenic 35.0%
!!! CCATCTAGATTTTTTAAGGC+TGG + chr3_2:45540571-45540590 Msa0407490:intron 35.0%
TGGTGGAAGAAATCAGTATT+GGG + chr3_2:45540616-45540635 Msa0407490:intron 35.0%
TCATTCTTAACGAAACCTTG+AGG - chr3_2:45540643-45540662 None:intergenic 35.0%
!! GTTGATAATGCTGTTCAAGA+TGG + chr3_2:45540898-45540917 Msa0407490:intron 35.0%
TTCAAGATGGTATGAAAGCT+GGG + chr3_2:45540911-45540930 Msa0407490:intron 35.0%
! GATGTTCCTTTTGTTCAAGA+TGG + chr3_2:45540973-45540992 Msa0407490:intron 35.0%
GTTCAAGATGGTATGAAAGT+TGG + chr3_2:45540985-45541004 Msa0407490:intron 35.0%
TCAAGATGGTATGAAAGTTG+GGG + chr3_2:45540987-45541006 Msa0407490:intron 35.0%
! ATCTTCAACAGAGTTTTCAG+AGG - chr3_2:45541073-45541092 None:intergenic 35.0%
TCTGAAAACTCTGTTGAAGA+TGG + chr3_2:45541072-45541091 Msa0407490:intron 35.0%
! GACTCCTTTGATATCTTTTG+AGG + chr3_2:45541161-45541180 Msa0407490:intron 35.0%
!! TCCTTGTCTAGTTCTGAATT+TGG + chr3_2:45541243-45541262 Msa0407490:intron 35.0%
ACCAAATTCAGAACTAGACA+AGG - chr3_2:45541247-45541266 None:intergenic 35.0%
AATGTGGATGGTGAAATAAC+TGG + chr3_2:45541282-45541301 Msa0407490:intron 35.0%
! TCTATCATAAAGTGGACTCT+TGG - chr3_2:45541328-45541347 None:intergenic 35.0%
TGATGTCAATGACATCAATG+GGG + chr3_2:45541350-45541369 Msa0407490:intron 35.0%
! AGAAGCAAGATTTGGTCAAA+AGG + chr3_2:45541458-45541477 Msa0407490:intron 35.0%
CATAGGTTGCACAACAAAAA+GGG - chr3_2:45541531-45541550 None:intergenic 35.0%
TCATAGGTTGCACAACAAAA+AGG - chr3_2:45541532-45541551 None:intergenic 35.0%
! GACTTGCTTATAGTTAAAGC+TGG + chr3_2:45541666-45541685 Msa0407490:intron 35.0%
TGAGTAATCATACAGACAAG+TGG - chr3_2:45541756-45541775 None:intergenic 35.0%
TTGTTAAATTGTCGCCATAG+CGG + chr3_2:45541792-45541811 Msa0407490:intron 35.0%
ACAGCATAATCATTAGTGGA+AGG - chr3_2:45541945-45541964 None:intergenic 35.0%
TGATTATGCTGTTCTATCTG+AGG + chr3_2:45541953-45541972 Msa0407490:intron 35.0%
TGTTGTCAATTGTAGATCGT+GGG + chr3_2:45541985-45542004 Msa0407490:intron 35.0%
! CACAGCATTTTGTACTAGAT+AGG + chr3_2:45542069-45542088 Msa0407490:intron 35.0%
AAAAACCAAGAGGAGAAACA+GGG - chr3_2:45542190-45542209 None:intergenic 35.0%
AATCATCAGCAAAAACCAAG+AGG - chr3_2:45542200-45542219 None:intergenic 35.0%
CTGACTCATCAATAATTTGG+AGG + chr3_2:45542234-45542253 Msa0407490:intron 35.0%
!!! CATCGCAAGGTTTTAAATTG+TGG + chr3_2:45542266-45542285 Msa0407490:intron 35.0%
!! CTAAGAAGAAGCGTTTACTT+TGG + chr3_2:45542614-45542633 Msa0407490:CDS 35.0%
TTGGAAACATGATATCGCTG+TGG - chr3_2:45537268-45537287 None:intergenic 40.0%
ATTCTTGCCCTCTTGTTCTT+TGG - chr3_2:45537287-45537306 None:intergenic 40.0%
! TCGCCTGTTTCTTTGTTTGA+TGG - chr3_2:45537350-45537369 None:intergenic 40.0%
! AGGTTTGGTAATTGTCCGAA+AGG + chr3_2:45537404-45537423 Msa0407490:intron 40.0%
GAACATTGTACCTATGCTCA+CGG + chr3_2:45537428-45537447 Msa0407490:CDS 40.0%
AACATTGTACCTATGCTCAC+GGG + chr3_2:45537429-45537448 Msa0407490:CDS 40.0%
AATGGTGAGGAATGTCCTTA+TGG + chr3_2:45537581-45537600 Msa0407490:CDS 40.0%
ATAGGCTTAGGGATGATTCT+TGG + chr3_2:45537624-45537643 Msa0407490:intron 40.0%
ACTTCCAATGCTTAATGCAC+AGG - chr3_2:45537663-45537682 None:intergenic 40.0%
GCAGGTAATGATAATACTGG+TGG + chr3_2:45537830-45537849 Msa0407490:intron 40.0%
CTGCAGTTGTGCATTAACTA+TGG - chr3_2:45538105-45538124 None:intergenic 40.0%
TTAATGCACAACTGCAGTTG+TGG + chr3_2:45538108-45538127 Msa0407490:intron 40.0%
TAACGTTTAAGCCACAATCG+TGG + chr3_2:45538152-45538171 Msa0407490:intron 40.0%
CTAAGACGAAGCCTTTACTT+TGG + chr3_2:45538399-45538418 Msa0407490:intron 40.0%
CTCTTGGAAACTCACTTCAT+TGG + chr3_2:45538531-45538550 Msa0407490:intron 40.0%
GCACATTTGTCAGTTTGTAG+CGG + chr3_2:45538602-45538621 Msa0407490:intron 40.0%
!! AGTTTGTAGCGGTGTTTTGA+TGG + chr3_2:45538613-45538632 Msa0407490:intron 40.0%
! CTCGTCTAAGACTTGAACTT+TGG - chr3_2:45538701-45538720 None:intergenic 40.0%
ATTTCACCTTCTACTCATGG+TGG + chr3_2:45539293-45539312 Msa0407490:intron 40.0%
TGAGTGGAAGTTGTAGCAAT+GGG - chr3_2:45539359-45539378 None:intergenic 40.0%
ATGAGTGGAAGTTGTAGCAA+TGG - chr3_2:45539360-45539379 None:intergenic 40.0%
!! AGGTGATGAAGATGGATTGA+AGG - chr3_2:45539390-45539409 None:intergenic 40.0%
!! CATCCCTCTGGAATAAAAAC+AGG - chr3_2:45539410-45539429 None:intergenic 40.0%
!!! CTGTTTTTATTCCAGAGGGA+TGG + chr3_2:45539408-45539427 Msa0407490:intron 40.0%
!! CAGTTAACCCATTTTGAGTG+TGG - chr3_2:45539467-45539486 None:intergenic 40.0%
!! CACACTCAAAATGGGTTAAC+TGG + chr3_2:45539465-45539484 Msa0407490:intron 40.0%
AGTGATAGTTGCTTCACCAA+AGG - chr3_2:45539645-45539664 None:intergenic 40.0%
TGGTGAAGCAACTATCACTT+TGG + chr3_2:45539646-45539665 Msa0407490:intron 40.0%
TGAAGCAACTATCACTTTGG+AGG + chr3_2:45539649-45539668 Msa0407490:intron 40.0%
GCTCATCAACATCGAAGAAA+AGG + chr3_2:45539760-45539779 Msa0407490:intron 40.0%
AGTATCCATCCACTTTGATG+TGG - chr3_2:45539813-45539832 None:intergenic 40.0%
TAGAGGGATTCCTATTGCTT+TGG + chr3_2:45539958-45539977 Msa0407490:intron 40.0%
TTATTGACCAATCTGGGTTG+TGG - chr3_2:45540160-45540179 None:intergenic 40.0%
GTTAGATACGCTGATAAGTG+TGG + chr3_2:45540286-45540305 Msa0407490:intron 40.0%
!! GTGTGGAGTGTTTTATCCAA+AGG + chr3_2:45540303-45540322 Msa0407490:intron 40.0%
AGTTGCTATGCAGTTTGGAA+TGG + chr3_2:45540447-45540466 Msa0407490:intron 40.0%
!! TTACCACTTGTTATGCGAAG+TGG + chr3_2:45540596-45540615 Msa0407490:intron 40.0%
! GTGGTGGAAGAAATCAGTAT+TGG + chr3_2:45540615-45540634 Msa0407490:intron 40.0%
! AAATCAGTATTGGGTCCTCA+AGG + chr3_2:45540625-45540644 Msa0407490:intron 40.0%
AGTTTAGGAATCTCAGCATG+AGG - chr3_2:45540706-45540725 None:intergenic 40.0%
GCTGAGATTCCTAAACTTGT+TGG + chr3_2:45540709-45540728 Msa0407490:intron 40.0%
ATAGTGCAGCCAACAAGTTT+AGG - chr3_2:45540721-45540740 None:intergenic 40.0%
ATCGCAAAATCTAGCGATGA+TGG + chr3_2:45540847-45540866 Msa0407490:intron 40.0%
! GGTTTAAAATCTAGCAAGGG+TGG + chr3_2:45540868-45540887 Msa0407490:intron 40.0%
GTTCAAGATGGTATGAAAGC+TGG + chr3_2:45540910-45540929 Msa0407490:intron 40.0%
TCAAGATGGTATGAAAGCTG+GGG + chr3_2:45540912-45540931 Msa0407490:intron 40.0%
CAAGATGGTATGAAAGTTGG+GGG + chr3_2:45540988-45541007 Msa0407490:intron 40.0%
!! GTCAGAGTGTTATCTTTTGG+AGG - chr3_2:45541144-45541163 None:intergenic 40.0%
!! GGAGTCAGAGTGTTATCTTT+TGG - chr3_2:45541147-45541166 None:intergenic 40.0%
TGAGGATTGTAAGCATGTGT+CGG + chr3_2:45541179-45541198 Msa0407490:intron 40.0%
GATGGTGAAATAACTGGATG+TGG + chr3_2:45541288-45541307 Msa0407490:intron 40.0%
GATTGAGAAGCTTGAAAGAG+TGG + chr3_2:45541422-45541441 Msa0407490:intron 40.0%
!! GCTGGTTCTGAATAAGCATT+TGG + chr3_2:45541684-45541703 Msa0407490:intron 40.0%
CATACAGACAAGTGGTTCAT+TGG - chr3_2:45541748-45541767 None:intergenic 40.0%
ATAGCTATTGTAGCCTATGG+TGG - chr3_2:45541846-45541865 None:intergenic 40.0%
AAGCATGGAATTGTGGTCTA+TGG - chr3_2:45541888-45541907 None:intergenic 40.0%
AAAACTCTGGCATACAAGCA+TGG - chr3_2:45541903-45541922 None:intergenic 40.0%
! ATGCTTGTATGCCAGAGTTT+TGG + chr3_2:45541902-45541921 Msa0407490:intron 40.0%
CATAATCATTAGTGGAAGGC+AGG - chr3_2:45541941-45541960 None:intergenic 40.0%
GTGTTGTCAATTGTAGATCG+TGG + chr3_2:45541984-45542003 Msa0407490:intron 40.0%
ACTGCGCAACAATTGTATAG+CGG + chr3_2:45542031-45542050 Msa0407490:intron 40.0%
CAAAAACCAAGAGGAGAAAC+AGG - chr3_2:45542191-45542210 None:intergenic 40.0%
TAATGCAACTGCAGTTGTGA+TGG + chr3_2:45542326-45542345 Msa0407490:intron 40.0%
GCAGAAACTGGTAAGACATT+TGG - chr3_2:45542535-45542554 None:intergenic 40.0%
AGTAAACGCTTCTTCTTAGC+CGG - chr3_2:45542613-45542632 None:intergenic 40.0%
GAAACATGATATCGCTGTGG+TGG - chr3_2:45537265-45537284 None:intergenic 45.0%
ACATTGTACCTATGCTCACG+GGG + chr3_2:45537430-45537449 Msa0407490:CDS 45.0%
TAAGGAAGCCATTGCCGAAT+TGG + chr3_2:45537462-45537481 Msa0407490:CDS 45.0%
CAAGGAATGGATGCAGTTTC+TGG + chr3_2:45537508-45537527 Msa0407490:CDS 45.0%
GAGTCCTGTGCATTAAGCAT+TGG + chr3_2:45537656-45537675 Msa0407490:CDS 45.0%
!! AGCATTGGAAGTATCGGAGA+TGG + chr3_2:45537671-45537690 Msa0407490:CDS 45.0%
GTCTGTGAACAAGCCAACAA+GGG + chr3_2:45537718-45537737 Msa0407490:CDS 45.0%
TCTGTGAACAAGCCAACAAG+GGG + chr3_2:45537719-45537738 Msa0407490:CDS 45.0%
TTCCAGTAAGTACCCCTTGT+TGG - chr3_2:45537734-45537753 None:intergenic 45.0%
AGATTAAGCTGTGTCCCATG+TGG + chr3_2:45537753-45537772 Msa0407490:CDS 45.0%
TGTGCATTAACTATGGCAGC+TGG - chr3_2:45538098-45538117 None:intergenic 45.0%
AACGTTTGCAACCACGATTG+TGG - chr3_2:45538166-45538185 None:intergenic 45.0%
GCCGAAACTGGTAAGACATT+TGG - chr3_2:45538320-45538339 None:intergenic 45.0%
GTTGCATCATTAGCCGAAAC+TGG - chr3_2:45538332-45538351 None:intergenic 45.0%
! TTGCCACACCTAGACTTGTT+GGG - chr3_2:45538364-45538383 None:intergenic 45.0%
TTTGCCACACCTAGACTTGT+TGG - chr3_2:45538365-45538384 None:intergenic 45.0%
AACAAGTCTAGGTGTGGCAA+AGG + chr3_2:45538364-45538383 Msa0407490:intron 45.0%
AGACGAAGCCTTTACTTTGG+TGG + chr3_2:45538402-45538421 Msa0407490:intron 45.0%
! GGCTAGTTGGGTAGAATAAG+AGG - chr3_2:45538479-45538498 None:intergenic 45.0%
! TTTTTGTGGGATTCTGGGCT+GGG + chr3_2:45538647-45538666 Msa0407490:intron 45.0%
! ATTTTGAATGGCCATCCCTC+TGG - chr3_2:45539422-45539441 None:intergenic 45.0%
GTGCTACCCACACTCAAAAT+GGG + chr3_2:45539457-45539476 Msa0407490:intron 45.0%
!!! GAGGATGTTGTTGTTTTGGG+AGG + chr3_2:45539668-45539687 Msa0407490:intron 45.0%
TTGGGAGGTTACTCTCTCTA+TGG + chr3_2:45539683-45539702 Msa0407490:intron 45.0%
TCAACATCGAAGAAAAGGCG+AGG + chr3_2:45539765-45539784 Msa0407490:intron 45.0%
CATCCACTTTGATGTGGTAG+GGG - chr3_2:45539807-45539826 None:intergenic 45.0%
CCATCCACTTTGATGTGGTA+GGG - chr3_2:45539808-45539827 None:intergenic 45.0%
TCCATCCACTTTGATGTGGT+AGG - chr3_2:45539809-45539828 None:intergenic 45.0%
!! ACAGTTGGTGCCAAAGCAAT+AGG - chr3_2:45539971-45539990 None:intergenic 45.0%
GGAAATCTACAACCACCAAC+AGG - chr3_2:45540058-45540077 None:intergenic 45.0%
TGGTGGTTGTAGATTTCCCT+CGG + chr3_2:45540060-45540079 Msa0407490:intron 45.0%
! TTGTAGATTTCCCTCGGTGT+TGG + chr3_2:45540066-45540085 Msa0407490:intron 45.0%
ACATTAACCTCCAACACCGA+GGG - chr3_2:45540079-45540098 None:intergenic 45.0%
AACATTAACCTCCAACACCG+AGG - chr3_2:45540080-45540099 None:intergenic 45.0%
! ACTTGGTTCAAGTTTGGGTG+TGG + chr3_2:45540113-45540132 Msa0407490:intron 45.0%
! CTTGGTTCAAGTTTGGGTGT+GGG + chr3_2:45540114-45540133 Msa0407490:intron 45.0%
TTTGCAACCACAACCCAGAT+TGG + chr3_2:45540150-45540169 Msa0407490:intron 45.0%
GCCGTTTATGAAAGATTCGG+TGG + chr3_2:45540339-45540358 Msa0407490:intron 45.0%
AACTGCATAGCAACTCTGTG+TGG - chr3_2:45540442-45540461 None:intergenic 45.0%
CACAGAGTTGCTATGCAGTT+TGG + chr3_2:45540442-45540461 Msa0407490:intron 45.0%
GGAATGGATCAAGATGTTCC+TGG + chr3_2:45540463-45540482 Msa0407490:intron 45.0%
ATGAGACTACTGCCATTGCT+TGG + chr3_2:45540503-45540522 Msa0407490:intron 45.0%
TGAGACTACTGCCATTGCTT+GGG + chr3_2:45540504-45540523 Msa0407490:intron 45.0%
TGAACTTGCAATCCTGTCCT+GGG - chr3_2:45540671-45540690 None:intergenic 45.0%
ATGAACTTGCAATCCTGTCC+TGG - chr3_2:45540672-45540691 None:intergenic 45.0%
GTTGGCTGCACTATTACCAT+TGG + chr3_2:45540727-45540746 Msa0407490:intron 45.0%
CAAGATGGTATGAAAGCTGG+GGG + chr3_2:45540913-45540932 Msa0407490:intron 45.0%
GGGGAAAAACTGATGCTGAT+GGG + chr3_2:45540932-45540951 Msa0407490:intron 45.0%
GGGAAAAACTGATGCTGATG+GGG + chr3_2:45540933-45540952 Msa0407490:intron 45.0%
GGAAAAACTGATGCTGATGG+GGG + chr3_2:45540934-45540953 Msa0407490:intron 45.0%
TGAGCCCTTTACACTAGACA+TGG + chr3_2:45541380-45541399 Msa0407490:intron 45.0%
GGCATACAAGCATGGAATTG+TGG - chr3_2:45541895-45541914 None:intergenic 45.0%
CATTAGTGGAAGGCAGGTTA+CGG - chr3_2:45541935-45541954 None:intergenic 45.0%
GCTATACAATTGTTGCGCAG+TGG - chr3_2:45542032-45542051 None:intergenic 45.0%
! TTTCACCCTGTTTCTCCTCT+TGG + chr3_2:45542182-45542201 Msa0407490:intron 45.0%
GAGGTACATTTCTCATCGCA+AGG + chr3_2:45542253-45542272 Msa0407490:intron 45.0%
!! TAACGTTTTAGCCGCAATCG+TGG + chr3_2:45542367-45542386 Msa0407490:intron 45.0%
AACGTTTGCAACCACGATTG+CGG - chr3_2:45538166-45538185 None:intergenic 45.0%
TTGCCACACCTAGACTTACT+GGG - chr3_2:45542579-45542598 None:intergenic 45.0%
TTTGCCACACCTAGACTTAC+TGG - chr3_2:45542580-45542599 None:intergenic 45.0%
AGTAAGTCTAGGTGTGGCAA+AGG + chr3_2:45542579-45542598 Msa0407490:CDS 45.0%
ATGATATCGCTGTGGTGGTC+TGG - chr3_2:45537260-45537279 None:intergenic 50.0%
GAAGCCATTGCCGAATTGGA+AGG + chr3_2:45537466-45537485 Msa0407490:CDS 50.0%
AGCTCCTTCCAATTCGGCAA+TGG - chr3_2:45537473-45537492 None:intergenic 50.0%
CCAGCTAGCTCCTTCCAATT+CGG - chr3_2:45537479-45537498 None:intergenic 50.0%
GGTCTGTGAACAAGCCAACA+AGG + chr3_2:45537717-45537736 Msa0407490:CDS 50.0%
!! AGCCAACAAGGGGTACTTAC+TGG + chr3_2:45537729-45537748 Msa0407490:CDS 50.0%
!! AAACAGGGCGTTGTCCCTTT+GGG + chr3_2:45537780-45537799 Msa0407490:CDS 50.0%
TAGTGACAGTCGTCCCCAAA+GGG - chr3_2:45537797-45537816 None:intergenic 50.0%
ATAGTGACAGTCGTCCCCAA+AGG - chr3_2:45537798-45537817 None:intergenic 50.0%
GACGACTGTCACTATGCTCA+CGG + chr3_2:45537803-45537822 Msa0407490:CDS 50.0%
!! TCTATGCCTTGGTGCCGTTA+TGG - chr3_2:45538065-45538084 None:intergenic 50.0%
ATAACGGCACCAAGGCATAG+AGG + chr3_2:45538064-45538083 Msa0407490:intron 50.0%
GCACAACATCCTCTATGCCT+TGG - chr3_2:45538076-45538095 None:intergenic 50.0%
ATGCACAACTGCAGTTGTGG+TGG + chr3_2:45538111-45538130 Msa0407490:intron 50.0%
ACCAGCATCCCAACAAGTCT+AGG + chr3_2:45538353-45538372 Msa0407490:CDS 50.0%
!! ACCTAGACTTGTTGGGATGC+TGG - chr3_2:45538357-45538376 None:intergenic 50.0%
CATCCCAACAAGTCTAGGTG+TGG + chr3_2:45538358-45538377 Msa0407490:intron 50.0%
TCTAGGTGTGGCAAAGGAAG+TGG + chr3_2:45538370-45538389 Msa0407490:intron 50.0%
! TCCTCTGCACTTGGCTAGTT+GGG - chr3_2:45538491-45538510 None:intergenic 50.0%
! CTTTTTGTGGGATTCTGGGC+TGG + chr3_2:45538646-45538665 Msa0407490:intron 50.0%
TCACCTTCTACTCATGGTGG+TGG + chr3_2:45539296-45539315 Msa0407490:intron 50.0%
! GGTGCTACCCACACTCAAAA+TGG + chr3_2:45539456-45539475 Msa0407490:intron 50.0%
TAGCCCCTACCACATCAAAG+TGG + chr3_2:45539801-45539820 Msa0407490:intron 50.0%
CCCTACCACATCAAAGTGGA+TGG + chr3_2:45539805-45539824 Msa0407490:intron 50.0%
!! TAGATTTCCCTCGGTGTTGG+AGG + chr3_2:45540069-45540088 Msa0407490:intron 50.0%
! TTCAAGTTTGGGTGTGGGAG+AGG + chr3_2:45540119-45540138 Msa0407490:intron 50.0%
CCACCACTTCGCATAACAAG+TGG - chr3_2:45540602-45540621 None:intergenic 50.0%
!! CCACTTGTTATGCGAAGTGG+TGG + chr3_2:45540599-45540618 Msa0407490:intron 50.0%
CGTTAAGAATGATGTGCCCC+AGG + chr3_2:45540651-45540670 Msa0407490:intron 50.0%
GAACTTGCAATCCTGTCCTG+GGG - chr3_2:45540670-45540689 None:intergenic 50.0%
ACAGCGCAGCCAACAAGTTT+AGG - chr3_2:45540823-45540842 None:intergenic 50.0%
GGGGGAAAAACTGATGCTGA+TGG + chr3_2:45540931-45540950 Msa0407490:intron 50.0%
ACCAAGGCATGGAGGATCTT+GGG + chr3_2:45541816-45541835 Msa0407490:intron 50.0%
CTATTGTAGCCTATGGTGGC+TGG - chr3_2:45541842-45541861 None:intergenic 50.0%
GGTCTATGGCAGAAACATGC+CGG - chr3_2:45541874-45541893 None:intergenic 50.0%
TGCAACTGCAGTTGTGATGG+CGG + chr3_2:45542329-45542348 Msa0407490:intron 50.0%
GGTGCATCATTGGCAGAAAC+TGG - chr3_2:45542547-45542566 None:intergenic 50.0%
GATGCTGGTAGGTGCATCAT+TGG - chr3_2:45542557-45542576 None:intergenic 50.0%
AGACTTACTGGGATGCTGGT+AGG - chr3_2:45542568-45542587 None:intergenic 50.0%
ACCAGCATCCCAGTAAGTCT+AGG + chr3_2:45542568-45542587 Msa0407490:CDS 50.0%
ACCTAGACTTACTGGGATGC+TGG - chr3_2:45542572-45542591 None:intergenic 50.0%
CATCCCAGTAAGTCTAGGTG+TGG + chr3_2:45542573-45542592 Msa0407490:CDS 50.0%
TCTAGGTGTGGCAAAGGAAG+TGG + chr3_2:45538370-45538389 Msa0407490:intron 50.0%
! GGCAAGTTGGGATGAACAAG+AGG - chr3_2:45542694-45542713 None:intergenic 50.0%
TGTACCTATGCTCACGGGGT+TGG + chr3_2:45537434-45537453 Msa0407490:CDS 55.0%
!! CTCACGGGGTTGGTGAGATA+AGG + chr3_2:45537444-45537463 Msa0407490:CDS 55.0%
CCGAATTGGAAGGAGCTAGC+TGG + chr3_2:45537476-45537495 Msa0407490:CDS 55.0%
TGTCCCATGTGGCAGCAAAC+AGG + chr3_2:45537764-45537783 Msa0407490:CDS 55.0%
GTCCCATGTGGCAGCAAACA+GGG + chr3_2:45537765-45537784 Msa0407490:CDS 55.0%
!! CAAACAGGGCGTTGTCCCTT+TGG + chr3_2:45537779-45537798 Msa0407490:CDS 55.0%
!! AACAGGGCGTTGTCCCTTTG+GGG + chr3_2:45537781-45537800 Msa0407490:CDS 55.0%
CACTATGCTCACGGAGAAGC+AGG + chr3_2:45537812-45537831 Msa0407490:CDS 55.0%
TTGTCGCCATAACGGCACCA+AGG + chr3_2:45538056-45538075 Msa0407490:intron 55.0%
CACAACTGCAGTTGTGGTGG+TGG + chr3_2:45538114-45538133 Msa0407490:intron 55.0%
ACCCAACTAGCCAAGTGCAG+AGG + chr3_2:45538487-45538506 Msa0407490:intron 55.0%
CTCCTCTGCACTTGGCTAGT+TGG - chr3_2:45538492-45538511 None:intergenic 55.0%
ACTCAGGTCTCCTCTGCACT+TGG - chr3_2:45538500-45538519 None:intergenic 55.0%
CCACCACCACCATGAGTAGA+AGG - chr3_2:45539302-45539321 None:intergenic 55.0%
!! CCTTCTACTCATGGTGGTGG+TGG + chr3_2:45539299-45539318 Msa0407490:intron 55.0%
AGAATGATGTGCCCCAGGAC+AGG + chr3_2:45540656-45540675 Msa0407490:intron 55.0%
CACCAAGGCATGGAGGATCT+TGG + chr3_2:45541815-45541834 Msa0407490:intron 55.0%
ACGGCAGCTAGCCAAAACTC+TGG - chr3_2:45541916-45541935 None:intergenic 55.0%
TGTGGCAAAGGAAGTGGAGC+CGG + chr3_2:45538376-45538395 Msa0407490:intron 55.0%
CTCACCAACCCCGTGAGCAT+AGG - chr3_2:45537441-45537460 None:intergenic 60.0%
! CTGGCTCTCGCAGCAAGGAA+TGG + chr3_2:45537495-45537514 Msa0407490:CDS 60.0%
! CGCCCTGTTTGCTGCCACAT+GGG - chr3_2:45537770-45537789 None:intergenic 60.0%
! ACGCCCTGTTTGCTGCCACA+TGG - chr3_2:45537771-45537790 None:intergenic 60.0%
! TGTGGGATTCTGGGCTGGGT+AGG + chr3_2:45538651-45538670 Msa0407490:intron 60.0%
! GTGGGATTCTGGGCTGGGTA+GGG + chr3_2:45538652-45538671 Msa0407490:intron 60.0%
TTGTCGCCATAGCGGCACCA+AGG + chr3_2:45541800-45541819 Msa0407490:intron 60.0%
!! TCCATGCCTTGGTGCCGCTA+TGG - chr3_2:45541809-45541828 None:intergenic 60.0%
ATAGCGGCACCAAGGCATGG+AGG + chr3_2:45541808-45541827 Msa0407490:intron 60.0%
GCCCAAGATCCTCCATGCCT+TGG - chr3_2:45541820-45541839 None:intergenic 60.0%
GATCTTGGGCCAGCCACCAT+AGG + chr3_2:45541830-45541849 Msa0407490:intron 60.0%
! GCTAGCTGGCTCTCGCAGCA+AGG + chr3_2:45537490-45537509 Msa0407490:CDS 65.0%
GCCATAGCGGCACCAAGGCA+TGG + chr3_2:45541805-45541824 Msa0407490:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 45537248 45542723 45537248 ID=Msa0407490;Name=Msa0407490
chr3_2 mRNA 45537248 45542723 45537248 ID=Msa0407490-mRNA-1;Parent=Msa0407490;Name=Msa0407490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0.25|0.2|5|0|259
chr3_2 exon 45537248 45537399 45537248 ID=Msa0407490-mRNA-1:exon:8829;Parent=Msa0407490-mRNA-1
chr3_2 exon 45537406 45537609 45537406 ID=Msa0407490-mRNA-1:exon:8830;Parent=Msa0407490-mRNA-1
chr3_2 exon 45537628 45537833 45537628 ID=Msa0407490-mRNA-1:exon:8831;Parent=Msa0407490-mRNA-1
chr3_2 exon 45538333 45538374 45538333 ID=Msa0407490-mRNA-1:exon:8832;Parent=Msa0407490-mRNA-1
chr3_2 exon 45542548 45542723 45542548 ID=Msa0407490-mRNA-1:exon:8833;Parent=Msa0407490-mRNA-1
chr3_2 CDS 45537248 45537399 45537248 ID=Msa0407490-mRNA-1:cds;Parent=Msa0407490-mRNA-1
chr3_2 CDS 45537406 45537609 45537406 ID=Msa0407490-mRNA-1:cds;Parent=Msa0407490-mRNA-1
chr3_2 CDS 45537628 45537833 45537628 ID=Msa0407490-mRNA-1:cds;Parent=Msa0407490-mRNA-1
chr3_2 CDS 45538333 45538374 45538333 ID=Msa0407490-mRNA-1:cds;Parent=Msa0407490-mRNA-1
chr3_2 CDS 45542548 45542723 45542548 ID=Msa0407490-mRNA-1:cds;Parent=Msa0407490-mRNA-1
Gene Sequence

>Msa0407490

ATGACTTTTCCAGACCACCACAGCGATATCATGTTTCCAAAGAACAAGAGGGCAAGAATTTCTGAAAACAATCATTCAAATGCATTCATATGCCCTCTTCCATCAAACAAAGAAACAGGCGACATTTTCTTCAAGACTCGTATTTGTCATAAGTTTGGTAATTGTCCGAAAGGTGAACATTGTACCTATGCTCACGGGGTTGGTGAGATAAGGAAGCCATTGCCGAATTGGAAGGAGCTAGCTGGCTCTCGCAGCAAGGAATGGATGCAGTTTCTGGATGACGATCAGAAAATCATTCACAAGATGGGGCTATGCAAGAAATACTACAATGGTGAGGAATGTCCTTATGGTGACAAGCTTAGGGATGATTCTTGGAAATCAAGAGAGTCCTGTGCATTAAGCATTGGAAGTATCGGAGATGGTTCTAATAATTTGGAAGGCAATAGGTCTGTGAACAAGCCAACAAGGGGTACTTACTGGAAGATTAAGCTGTGTCCCATGTGGCAGCAAACAGGGCGTTGTCCCTTTGGGGACGACTGTCACTATGCTCACGGAGAAGCAGTTTCGGCTAATGATGCAACAACCAGCATCCCAACAAGTCTAGTTTCTGCCAATGATGCACCTACCAGCATCCCAGTAAGTCTAGGTGTGGCAAAGGAAGTGGAGCCGGCTAAGAAGAAGCGTTTACTTTGGTTGAAATTAAACAAGAAGATCAATGCTATATATGCTGATTGGATTGATGATTCACCTCTTGTTCATCCCAACTTGCCAAGTGCATAG
Protein sequence

>Msa0407490

MTFPDHHSDIMFPKNKRARISENNHSNAFICPLPSNKETGDIFFKTRICHKFGNCPKGEHCTYAHGVGEIRKPLPNWKELAGSRSKEWMQFLDDDQKIIHKMGLCKKYYNGEECPYGDKLRDDSWKSRESCALSIGSIGDGSNNLEGNRSVNKPTRGTYWKIKLCPMWQQTGRCPFGDDCHYAHGEAVSANDATTSIPTSLVSANDAPTSIPVSLGVAKEVEPAKKKRLLWLKLNKKINAIYADWIDDSPLVHPNLPSA*