Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407790 | KEH15542.1 | 73.529 | 102 | 16 | 2 | 28 | 118 | 50 | 151 | 6.45e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407790 | A0A072TDR2 | 73.529 | 102 | 16 | 2 | 28 | 118 | 50 | 151 | 3.08e-41 | 146 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0407790 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 14 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 3_2:+46730019 | Msa0407790:CDS |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 3_2:-46731645 | None:intergenic |
| AAATGTAATGATAGGCCATT+TGG | 0.319534 | 3_2:-46730288 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 3_2:+46731594 | Msa0407790:intron |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 3_2:+46731669 | Msa0407790:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 3_2:+46730232 | Msa0407790:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 3_2:+46730140 | Msa0407790:CDS |
| TTACAATCAGTTCTTGATGT+TGG | 0.449450 | 3_2:-46730230 | None:intergenic |
| AATGTAATGATAGGCCATTT+GGG | 0.467781 | 3_2:-46730287 | None:intergenic |
| GTATTGTTAAATGTAATGAT+AGG | 0.499697 | 3_2:-46730296 | None:intergenic |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 3_2:-46730163 | None:intergenic |
| GCTAATATTGGCATTATATG+TGG | 0.576264 | 3_2:+46731681 | Msa0407790:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 3_2:+46730313 | Msa0407790:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 3_2:-46730026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | + | chr3_2:46730618-46730637 | Msa0407790:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | + | chr3_2:46730619-46730638 | Msa0407790:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+TGG | + | chr3_2:46730618-46730637 | Msa0407790:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | + | chr3_2:46730619-46730638 | Msa0407790:intron | 10.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr3_2:46731081-46731100 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr3_2:46731081-46731100 | Msa0407790:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr3_2:46731081-46731100 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr3_2:46731081-46731100 | Msa0407790:intron | 15.0% |
| !! | GTATTGTTAAATGTAATGAT+AGG | - | chr3_2:46730299-46730318 | None:intergenic | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr3_2:46730586-46730605 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr3_2:46730587-46730606 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr3_2:46730666-46730685 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr3_2:46730871-46730890 | Msa0407790:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr3_2:46731095-46731114 | Msa0407790:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr3_2:46731157-46731176 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr3_2:46731567-46731586 | Msa0407790:intron | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr3_2:46731568-46731587 | Msa0407790:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr3_2:46731648-46731667 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr3_2:46731649-46731668 | Msa0407790:CDS | 20.0% |
| !! | GTATTGTTAAATGTAATGAT+AGG | - | chr3_2:46730299-46730318 | None:intergenic | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr3_2:46730586-46730605 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr3_2:46730587-46730606 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr3_2:46730666-46730685 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr3_2:46730871-46730890 | Msa0407790:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr3_2:46731095-46731114 | Msa0407790:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr3_2:46731157-46731176 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr3_2:46731567-46731586 | Msa0407790:intron | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr3_2:46731568-46731587 | Msa0407790:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr3_2:46731648-46731667 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr3_2:46731649-46731668 | Msa0407790:CDS | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr3_2:46730019-46730038 | Msa0407790:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr3_2:46730029-46730048 | None:intergenic | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr3_2:46730083-46730102 | Msa0407790:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr3_2:46730264-46730283 | Msa0407790:CDS | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr3_2:46730343-46730362 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr3_2:46730344-46730363 | None:intergenic | 25.0% |
| ! | AATGTTTAGCAATAAAGGTT+CGG | + | chr3_2:46730448-46730467 | Msa0407790:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr3_2:46730997-46731016 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+TGG | + | chr3_2:46731045-46731064 | Msa0407790:intron | 25.0% |
| !! | TTTTTGATCTAACACTTAAG+AGG | - | chr3_2:46731348-46731367 | None:intergenic | 25.0% |
| !!! | GTTTCTAGTATAAATAGTTG+CGG | - | chr3_2:46731383-46731402 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr3_2:46731399-46731418 | Msa0407790:intron | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr3_2:46730019-46730038 | Msa0407790:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr3_2:46730029-46730048 | None:intergenic | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr3_2:46730083-46730102 | Msa0407790:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr3_2:46730264-46730283 | Msa0407790:CDS | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr3_2:46730343-46730362 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr3_2:46730344-46730363 | None:intergenic | 25.0% |
| ! | AATGTTTAGCAATAAAGGTT+CGG | + | chr3_2:46730448-46730467 | Msa0407790:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr3_2:46730997-46731016 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+TGG | + | chr3_2:46731045-46731064 | Msa0407790:intron | 25.0% |
| !! | TTTTTGATCTAACACTTAAG+AGG | - | chr3_2:46731348-46731367 | None:intergenic | 25.0% |
| !!! | GTTTCTAGTATAAATAGTTG+CGG | - | chr3_2:46731383-46731402 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr3_2:46731399-46731418 | Msa0407790:intron | 25.0% |
| ! | ACGTCATTTGCTAAAAAAGA+AGG | + | chr3_2:46730077-46730096 | Msa0407790:intron | 30.0% |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr3_2:46730140-46730159 | Msa0407790:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr3_2:46730166-46730185 | None:intergenic | 30.0% | |
| TTACAATCAGTTCTTGATGT+TGG | - | chr3_2:46730233-46730252 | None:intergenic | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | chr3_2:46730232-46730251 | Msa0407790:CDS | 30.0% | |
| AATGTAATGATAGGCCATTT+GGG | - | chr3_2:46730290-46730309 | None:intergenic | 30.0% | |
| AAATGTAATGATAGGCCATT+TGG | - | chr3_2:46730291-46730310 | None:intergenic | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr3_2:46730313-46730332 | Msa0407790:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr3_2:46730345-46730364 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr3_2:46730342-46730361 | Msa0407790:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr3_2:46730358-46730377 | Msa0407790:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr3_2:46730359-46730378 | Msa0407790:intron | 30.0% |
| ! | CTTTCTCTGATAGAGATTTT+TGG | + | chr3_2:46730471-46730490 | Msa0407790:intron | 30.0% |
| AGATCTCTGATCTAAAAATC+TGG | + | chr3_2:46730505-46730524 | Msa0407790:intron | 30.0% | |
| TGATCTAAAAATCTGGATGT+TGG | + | chr3_2:46730512-46730531 | Msa0407790:intron | 30.0% | |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | + | chr3_2:46730630-46730649 | Msa0407790:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr3_2:46730656-46730675 | Msa0407790:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | chr3_2:46730740-46730759 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr3_2:46730758-46730777 | Msa0407790:intron | 30.0% |
| TTACATGGTTGTTTGAAAGT+TGG | + | chr3_2:46730816-46730835 | Msa0407790:intron | 30.0% | |
| ! | CTAAGGTATTTCCTAATACT+CGG | + | chr3_2:46730912-46730931 | Msa0407790:intron | 30.0% |
| ! | TTGAAGATTTTGTGGAAGAT+TGG | + | chr3_2:46731053-46731072 | Msa0407790:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | - | chr3_2:46731123-46731142 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr3_2:46731128-46731147 | Msa0407790:intron | 30.0% | |
| !!! | ATATGAAGACCTTTTTTGCT+AGG | + | chr3_2:46731164-46731183 | Msa0407790:intron | 30.0% |
| TGTATTCATCCTAGCAAAAA+AGG | - | chr3_2:46731176-46731195 | None:intergenic | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr3_2:46731451-46731470 | Msa0407790:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr3_2:46731452-46731471 | Msa0407790:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr3_2:46731516-46731535 | Msa0407790:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr3_2:46731560-46731579 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr3_2:46731594-46731613 | Msa0407790:intron | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr3_2:46731656-46731675 | Msa0407790:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | + | chr3_2:46731681-46731700 | Msa0407790:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr3_2:46731797-46731816 | None:intergenic | 30.0% |
| ! | ACGTCATTTGCTAAAAAAGA+AGG | + | chr3_2:46730077-46730096 | Msa0407790:intron | 30.0% |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr3_2:46730140-46730159 | Msa0407790:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | - | chr3_2:46730166-46730185 | None:intergenic | 30.0% | |
| TTACAATCAGTTCTTGATGT+TGG | - | chr3_2:46730233-46730252 | None:intergenic | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | + | chr3_2:46730232-46730251 | Msa0407790:CDS | 30.0% | |
| AATGTAATGATAGGCCATTT+GGG | - | chr3_2:46730290-46730309 | None:intergenic | 30.0% | |
| AAATGTAATGATAGGCCATT+TGG | - | chr3_2:46730291-46730310 | None:intergenic | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr3_2:46730313-46730332 | Msa0407790:CDS | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr3_2:46730345-46730364 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr3_2:46730342-46730361 | Msa0407790:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr3_2:46730358-46730377 | Msa0407790:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr3_2:46730359-46730378 | Msa0407790:intron | 30.0% |
| ! | CTTTCTCTGATAGAGATTTT+TGG | + | chr3_2:46730471-46730490 | Msa0407790:intron | 30.0% |
| AGATCTCTGATCTAAAAATC+TGG | + | chr3_2:46730505-46730524 | Msa0407790:intron | 30.0% | |
| TGATCTAAAAATCTGGATGT+TGG | + | chr3_2:46730512-46730531 | Msa0407790:intron | 30.0% | |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | + | chr3_2:46730630-46730649 | Msa0407790:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr3_2:46730656-46730675 | Msa0407790:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | - | chr3_2:46730740-46730759 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr3_2:46730758-46730777 | Msa0407790:intron | 30.0% |
| TTACATGGTTGTTTGAAAGT+TGG | + | chr3_2:46730816-46730835 | Msa0407790:intron | 30.0% | |
| ! | CTAAGGTATTTCCTAATACT+CGG | + | chr3_2:46730912-46730931 | Msa0407790:intron | 30.0% |
| ! | TTGAAGATTTTGTGGAAGAT+TGG | + | chr3_2:46731053-46731072 | Msa0407790:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | - | chr3_2:46731123-46731142 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr3_2:46731128-46731147 | Msa0407790:intron | 30.0% | |
| !!! | ATATGAAGACCTTTTTTGCT+AGG | + | chr3_2:46731164-46731183 | Msa0407790:intron | 30.0% |
| TGTATTCATCCTAGCAAAAA+AGG | - | chr3_2:46731176-46731195 | None:intergenic | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr3_2:46731451-46731470 | Msa0407790:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr3_2:46731452-46731471 | Msa0407790:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr3_2:46731516-46731535 | Msa0407790:intron | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr3_2:46731560-46731579 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr3_2:46731594-46731613 | Msa0407790:intron | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr3_2:46731656-46731675 | Msa0407790:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | + | chr3_2:46731681-46731700 | Msa0407790:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr3_2:46731797-46731816 | None:intergenic | 30.0% |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr3_2:46730400-46730419 | Msa0407790:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr3_2:46730401-46730420 | Msa0407790:intron | 35.0% | |
| GCTGCAATGTTTAGCAATAA+AGG | + | chr3_2:46730443-46730462 | Msa0407790:intron | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr3_2:46730771-46730790 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | chr3_2:46730784-46730803 | Msa0407790:intron | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | chr3_2:46730801-46730820 | Msa0407790:intron | 35.0% |
| GTTGTTTGAAAGTTGGCTAA+TGG | + | chr3_2:46730823-46730842 | Msa0407790:intron | 35.0% | |
| GGAAGATTGGAACCAAATAA+TGG | + | chr3_2:46731066-46731085 | Msa0407790:intron | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr3_2:46731103-46731122 | Msa0407790:intron | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr3_2:46731270-46731289 | Msa0407790:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr3_2:46731530-46731549 | Msa0407790:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr3_2:46731531-46731550 | Msa0407790:intron | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr3_2:46731669-46731688 | Msa0407790:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr3_2:46730400-46730419 | Msa0407790:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr3_2:46730401-46730420 | Msa0407790:intron | 35.0% | |
| GCTGCAATGTTTAGCAATAA+AGG | + | chr3_2:46730443-46730462 | Msa0407790:intron | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr3_2:46730771-46730790 | None:intergenic | 35.0% | |
| ! | TGCTTTGTTGCAAGATGAAA+CGG | + | chr3_2:46730784-46730803 | Msa0407790:intron | 35.0% |
| ! | AAACGGAGAAGTCTTTTACA+TGG | + | chr3_2:46730801-46730820 | Msa0407790:intron | 35.0% |
| GTTGTTTGAAAGTTGGCTAA+TGG | + | chr3_2:46730823-46730842 | Msa0407790:intron | 35.0% | |
| GGAAGATTGGAACCAAATAA+TGG | + | chr3_2:46731066-46731085 | Msa0407790:intron | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr3_2:46731103-46731122 | Msa0407790:intron | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr3_2:46731270-46731289 | Msa0407790:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr3_2:46731530-46731549 | Msa0407790:intron | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr3_2:46731531-46731550 | Msa0407790:intron | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr3_2:46731669-46731688 | Msa0407790:CDS | 35.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | + | chr3_2:46730273-46730292 | Msa0407790:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr3_2:46730362-46730381 | Msa0407790:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr3_2:46730363-46730382 | Msa0407790:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr3_2:46730364-46730383 | Msa0407790:intron | 40.0% | |
| ! | AAACATTGCAGCGACTTTTC+CGG | - | chr3_2:46730435-46730454 | None:intergenic | 40.0% |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr3_2:46730731-46730750 | None:intergenic | 40.0% | |
| TGAAAGTTGGCTAATGGCAA+TGG | + | chr3_2:46730829-46730848 | Msa0407790:intron | 40.0% | |
| GAAAGTTGGCTAATGGCAAT+GGG | + | chr3_2:46730830-46730849 | Msa0407790:intron | 40.0% | |
| GATCAAGATAAGGCAATGTG+CGG | + | chr3_2:46730881-46730900 | Msa0407790:intron | 40.0% | |
| AATGTGCGGAGCAATATCTA+AGG | + | chr3_2:46730895-46730914 | Msa0407790:intron | 40.0% | |
| CATAAACGATGCCGAGTATT+AGG | - | chr3_2:46730926-46730945 | None:intergenic | 40.0% | |
| CTAGGATGAATACAACACAG+AGG | + | chr3_2:46731182-46731201 | Msa0407790:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr3_2:46731432-46731451 | Msa0407790:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr3_2:46731444-46731463 | None:intergenic | 40.0% |
| AAGCAAAAATGAGGCCCAAA+TGG | + | chr3_2:46730273-46730292 | Msa0407790:CDS | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr3_2:46730362-46730381 | Msa0407790:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr3_2:46730363-46730382 | Msa0407790:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr3_2:46730364-46730383 | Msa0407790:intron | 40.0% | |
| ! | AAACATTGCAGCGACTTTTC+CGG | - | chr3_2:46730435-46730454 | None:intergenic | 40.0% |
| AATCCAGTAAATGGCGCAAA+TGG | - | chr3_2:46730731-46730750 | None:intergenic | 40.0% | |
| TGAAAGTTGGCTAATGGCAA+TGG | + | chr3_2:46730829-46730848 | Msa0407790:intron | 40.0% | |
| GAAAGTTGGCTAATGGCAAT+GGG | + | chr3_2:46730830-46730849 | Msa0407790:intron | 40.0% | |
| GATCAAGATAAGGCAATGTG+CGG | + | chr3_2:46730881-46730900 | Msa0407790:intron | 40.0% | |
| AATGTGCGGAGCAATATCTA+AGG | + | chr3_2:46730895-46730914 | Msa0407790:intron | 40.0% | |
| CATAAACGATGCCGAGTATT+AGG | - | chr3_2:46730926-46730945 | None:intergenic | 40.0% | |
| CTAGGATGAATACAACACAG+AGG | + | chr3_2:46731182-46731201 | Msa0407790:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr3_2:46731432-46731451 | Msa0407790:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr3_2:46731444-46731463 | None:intergenic | 40.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr3_2:46730370-46730389 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr3_2:46730725-46730744 | Msa0407790:intron | 45.0% |
| CTCGGCATCGTTTATGTTTG+TGG | + | chr3_2:46730930-46730949 | Msa0407790:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr3_2:46731254-46731273 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr3_2:46731543-46731562 | None:intergenic | 45.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr3_2:46730370-46730389 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | + | chr3_2:46730725-46730744 | Msa0407790:intron | 45.0% |
| CTCGGCATCGTTTATGTTTG+TGG | + | chr3_2:46730930-46730949 | Msa0407790:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr3_2:46731254-46731273 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr3_2:46731543-46731562 | None:intergenic | 45.0% | |
| ! | ATTGCAGCGACTTTTCCGGT+AGG | - | chr3_2:46730431-46730450 | None:intergenic | 50.0% |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr3_2:46730636-46730655 | Msa0407790:intron | 50.0% |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr3_2:46731414-46731433 | Msa0407790:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr3_2:46731544-46731563 | Msa0407790:intron | 50.0% | |
| ! | ATTGCAGCGACTTTTCCGGT+AGG | - | chr3_2:46730431-46730450 | None:intergenic | 50.0% |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr3_2:46730636-46730655 | Msa0407790:intron | 50.0% |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr3_2:46731414-46731433 | Msa0407790:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr3_2:46731544-46731563 | Msa0407790:intron | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr3_2:46730413-46730432 | Msa0407790:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr3_2:46730640-46730659 | Msa0407790:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr3_2:46730413-46730432 | Msa0407790:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr3_2:46730640-46730659 | Msa0407790:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 46730000 | 46731836 | 46730000 | ID=Msa0407790;Name=Msa0407790 |
| chr3_2 | mRNA | 46730000 | 46731836 | 46730000 | ID=Msa0407790-mRNA-1;Parent=Msa0407790;Name=Msa0407790-mRNA-1;_AED=0.23;_eAED=0.34;_QI=0|0|0|1|0|0.33|3|0|182 |
| chr3_2 | exon | 46730000 | 46730078 | 46730000 | ID=Msa0407790-mRNA-1:exon:9005;Parent=Msa0407790-mRNA-1 |
| chr3_2 | exon | 46730099 | 46730334 | 46730099 | ID=Msa0407790-mRNA-1:exon:9006;Parent=Msa0407790-mRNA-1 |
| chr3_2 | exon | 46731603 | 46731836 | 46731603 | ID=Msa0407790-mRNA-1:exon:9007;Parent=Msa0407790-mRNA-1 |
| chr3_2 | CDS | 46730000 | 46730078 | 46730000 | ID=Msa0407790-mRNA-1:cds;Parent=Msa0407790-mRNA-1 |
| chr3_2 | CDS | 46730099 | 46730334 | 46730099 | ID=Msa0407790-mRNA-1:cds;Parent=Msa0407790-mRNA-1 |
| chr3_2 | CDS | 46731603 | 46731836 | 46731603 | ID=Msa0407790-mRNA-1:cds;Parent=Msa0407790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
