AlfalfaGEDB | Msa0407860

M. sativa cultivar zhongmu-4 / Msa0407860

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407860	KEH15542.1	73.529	102	16	2	28	118	50	151	6.45e-41	146

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0407860	A0A072TDR2	73.529	102	16	2	28	118	50	151	3.08e-41	146

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TFs/TRs:

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Gene ID	Type	Classification
Msa0407860	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 14 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTAATGATAGGCCATT+TGG	0.319534	3_2:+46980374	None:intergenic
AACATCAAGAACTGATTGTA+AGG	0.444776	3_2:-46980430	Msa0407860:CDS
AATGTAATGATAGGCCATTT+GGG	0.467781	3_2:+46980375	None:intergenic
ATATTTGTTTGCTCTAATGC+TGG	0.447741	3_2:-46980522	Msa0407860:CDS
ATTATGCAGACATATCTTGA+TGG	0.397243	3_2:-46979068	Msa0407860:intron
CAATACTCATAATCATGCAA+TGG	0.611156	3_2:-46980349	Msa0407860:intron
CGCTTTAAAATATATTCATT+TGG	0.310558	3_2:+46979017	None:intergenic
GCTAATATTGGCATTATATG+TGG	0.576264	3_2:-46978981	Msa0407860:CDS
GTATTGTTAAATGTAATGAT+AGG	0.499697	3_2:+46980366	None:intergenic
TATTGATCCTTGTATTGATA+TGG	0.239238	3_2:-46980643	Msa0407860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTTGTTTGCTCTAATGC+TGG	-	chr3_2:46978988-46979007	Msa0407860:CDS	30.0%
TGTCATTACTATCAACATGT+TGG	+	chr3_2:46979014-46979033	None:intergenic	30.0%
TTACAATCAGTTCTTGATGT+TGG	+	chr3_2:46979081-46979100	None:intergenic	30.0%
AACATCAAGAACTGATTGTA+AGG	-	chr3_2:46979080-46979099	Msa0407860:intron	30.0%
AATGTAATGATAGGCCATTT+GGG	+	chr3_2:46979138-46979157	None:intergenic	30.0%
AAATGTAATGATAGGCCATT+TGG	+	chr3_2:46979139-46979158	None:intergenic	30.0%
CAATACTCATAATCATGCAA+TGG	-	chr3_2:46979161-46979180	Msa0407860:intron	30.0%
CCTAAGATAGTTTATACTCT+TGG	+	chr3_2:46979193-46979212	None:intergenic	30.0%
AATGTTTAGCAATGAAGGTT+CGG	-	chr3_2:46979296-46979315	Msa0407860:intron	30.0%
AGATCTCTGATCTAAAAATC+TGG	-	chr3_2:46979353-46979372	Msa0407860:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	46978848	46980684	46978848	ID=Msa0407860;Name=Msa0407860
chr3_2	mRNA	46978848	46980684	46978848	ID=Msa0407860-mRNA-1;Parent=Msa0407860;Name=Msa0407860-mRNA-1;_AED=0.23;_eAED=0.34;_QI=0\|0\|0\|1\|0\|0.33\|3\|0\|182
chr3_2	exon	46980606	46980684	46980606	ID=Msa0407860-mRNA-1:exon:9034;Parent=Msa0407860-mRNA-1
chr3_2	exon	46980350	46980585	46980350	ID=Msa0407860-mRNA-1:exon:9033;Parent=Msa0407860-mRNA-1
chr3_2	exon	46978848	46979081	46978848	ID=Msa0407860-mRNA-1:exon:9032;Parent=Msa0407860-mRNA-1
chr3_2	CDS	46980606	46980684	46980606	ID=Msa0407860-mRNA-1:cds;Parent=Msa0407860-mRNA-1
chr3_2	CDS	46980350	46980585	46980350	ID=Msa0407860-mRNA-1:cds;Parent=Msa0407860-mRNA-1
chr3_2	CDS	46978848	46979081	46978848	ID=Msa0407860-mRNA-1:cds;Parent=Msa0407860-mRNA-1

Gene Sequence

>Msa0407860

ATGTTCATGAGCATCAAAATATTGATCCTTGTATTGATATGGAATTTGACTCTCTTGATGATGTTAAAAATTTATACACGTTTTGGAATTCATACACGTTCAACTAAGACAAATTTGTGCATATTTGTTTGCTCTAATGCTGGCCAACATGTTGATAGTAATGACAAAGAAGAAAGCAATGCAATCACAGTAAAAAGCAAAAAAAGATGTCCAACATCAAGAACTGATTGTAAGGCAACACTTGTAGTTTCAAAAGCAAAAATGAGGCCCAAATGGCCTATCATTACATTTAACAATACTCATAATCATGCAATGACATATCTTGATGGTTTTCAATCAAAAAATATTATTGAAATTCCAAATGAATATATTTTAAAGCGTTGGACAAAGGATGCTAATATTGGCATTATATGTGGTGTTAATGAAAACAATTCAGTACGTGAGAGTACTAAATCAGCAACTCTTCGAAGTATGCATGTGCTTAGTCAAGCAAGTTTATTATCTGACCTTGCAAAATCTGAGAACATATATGAGTTTATATCTCCATAG

Protein sequence

>Msa0407860

MFMSIKILILVLIWNLTLLMMLKIYTRFGIHTRSTKTNLCIFVCSNAGQHVDSNDKEESNAITVKSKKRCPTSRTDCKATLVVSKAKMRPKWPIITFNNTHNHAMTYLDGFQSKNIIEIPNEYILKRWTKDANIGIICGVNENNSVRESTKSATLRSMHVLSQASLLSDLAKSENIYEFISP*