Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407860 | KEH15542.1 | 73.529 | 102 | 16 | 2 | 28 | 118 | 50 | 151 | 6.45e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407860 | A0A072TDR2 | 73.529 | 102 | 16 | 2 | 28 | 118 | 50 | 151 | 3.08e-41 | 146 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0407860 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 14 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 3_2:-46980643 | Msa0407860:CDS |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 3_2:+46979017 | None:intergenic |
| AAATGTAATGATAGGCCATT+TGG | 0.319534 | 3_2:+46980374 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 3_2:-46979068 | Msa0407860:intron |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 3_2:-46978993 | Msa0407860:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 3_2:-46980430 | Msa0407860:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 3_2:-46980522 | Msa0407860:CDS |
| TTACAATCAGTTCTTGATGT+TGG | 0.449450 | 3_2:+46980432 | None:intergenic |
| AATGTAATGATAGGCCATTT+GGG | 0.467781 | 3_2:+46980375 | None:intergenic |
| GTATTGTTAAATGTAATGAT+AGG | 0.499697 | 3_2:+46980366 | None:intergenic |
| TGTCATTACTATCAACATGT+TGG | 0.533945 | 3_2:+46980499 | None:intergenic |
| GCTAATATTGGCATTATATG+TGG | 0.576264 | 3_2:-46978981 | Msa0407860:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 3_2:-46980349 | Msa0407860:intron |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 3_2:+46980636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr3_2:46979466-46979485 | Msa0407860:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr3_2:46979467-46979486 | Msa0407860:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr3_2:46979466-46979485 | Msa0407860:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr3_2:46979467-46979486 | Msa0407860:intron | 10.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr3_2:46979929-46979948 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr3_2:46979929-46979948 | Msa0407860:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr3_2:46979929-46979948 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr3_2:46979929-46979948 | Msa0407860:intron | 15.0% |
| !! | GTATTGTTAAATGTAATGAT+AGG | + | chr3_2:46979147-46979166 | None:intergenic | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr3_2:46979434-46979453 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr3_2:46979435-46979454 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr3_2:46979514-46979533 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr3_2:46979719-46979738 | Msa0407860:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr3_2:46979943-46979962 | Msa0407860:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr3_2:46980005-46980024 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr3_2:46980415-46980434 | Msa0407860:CDS | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr3_2:46980416-46980435 | Msa0407860:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr3_2:46980496-46980515 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr3_2:46980497-46980516 | Msa0407860:CDS | 20.0% |
| !! | GTATTGTTAAATGTAATGAT+AGG | + | chr3_2:46979147-46979166 | None:intergenic | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr3_2:46979434-46979453 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr3_2:46979435-46979454 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr3_2:46979514-46979533 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr3_2:46979719-46979738 | Msa0407860:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr3_2:46979943-46979962 | Msa0407860:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr3_2:46980005-46980024 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr3_2:46980415-46980434 | Msa0407860:CDS | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr3_2:46980416-46980435 | Msa0407860:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr3_2:46980496-46980515 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr3_2:46980497-46980516 | Msa0407860:CDS | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr3_2:46978867-46978886 | Msa0407860:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr3_2:46978877-46978896 | None:intergenic | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr3_2:46978931-46978950 | Msa0407860:CDS | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr3_2:46979112-46979131 | Msa0407860:intron | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr3_2:46979191-46979210 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr3_2:46979192-46979211 | None:intergenic | 25.0% |
| !! | CATCATCAATCCATTTTATT+CGG | - | chr3_2:46979606-46979625 | Msa0407860:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr3_2:46979845-46979864 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+TGG | - | chr3_2:46979893-46979912 | Msa0407860:intron | 25.0% |
| !! | TTTTTGATCTAACACTTAAG+AGG | + | chr3_2:46980196-46980215 | None:intergenic | 25.0% |
| !!! | GTTTCTAGTATAAATAGTTG+CGG | + | chr3_2:46980231-46980250 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr3_2:46980247-46980266 | Msa0407860:intron | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr3_2:46978867-46978886 | Msa0407860:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr3_2:46978877-46978896 | None:intergenic | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr3_2:46978931-46978950 | Msa0407860:CDS | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr3_2:46979112-46979131 | Msa0407860:intron | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr3_2:46979191-46979210 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr3_2:46979192-46979211 | None:intergenic | 25.0% |
| !! | CATCATCAATCCATTTTATT+CGG | - | chr3_2:46979606-46979625 | Msa0407860:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr3_2:46979845-46979864 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+TGG | - | chr3_2:46979893-46979912 | Msa0407860:intron | 25.0% |
| !! | TTTTTGATCTAACACTTAAG+AGG | + | chr3_2:46980196-46980215 | None:intergenic | 25.0% |
| !!! | GTTTCTAGTATAAATAGTTG+CGG | + | chr3_2:46980231-46980250 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr3_2:46980247-46980266 | Msa0407860:intron | 25.0% |
| ! | ACGTCATTTGCTAAAAAAGA+AGG | - | chr3_2:46978925-46978944 | Msa0407860:CDS | 30.0% |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr3_2:46978988-46979007 | Msa0407860:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | + | chr3_2:46979014-46979033 | None:intergenic | 30.0% | |
| TTACAATCAGTTCTTGATGT+TGG | + | chr3_2:46979081-46979100 | None:intergenic | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | - | chr3_2:46979080-46979099 | Msa0407860:intron | 30.0% | |
| AATGTAATGATAGGCCATTT+GGG | + | chr3_2:46979138-46979157 | None:intergenic | 30.0% | |
| AAATGTAATGATAGGCCATT+TGG | + | chr3_2:46979139-46979158 | None:intergenic | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr3_2:46979161-46979180 | Msa0407860:intron | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr3_2:46979193-46979212 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr3_2:46979190-46979209 | Msa0407860:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr3_2:46979206-46979225 | Msa0407860:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr3_2:46979207-46979226 | Msa0407860:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr3_2:46979296-46979315 | Msa0407860:intron | 30.0% | |
| ! | CTTTCTCTGATAGAGATTTT+TGG | - | chr3_2:46979319-46979338 | Msa0407860:intron | 30.0% |
| AGATCTCTGATCTAAAAATC+TGG | - | chr3_2:46979353-46979372 | Msa0407860:intron | 30.0% | |
| TGATCTAAAAATCTGGATGT+TGG | - | chr3_2:46979360-46979379 | Msa0407860:intron | 30.0% | |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr3_2:46979478-46979497 | Msa0407860:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr3_2:46979504-46979523 | Msa0407860:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | + | chr3_2:46979588-46979607 | None:intergenic | 30.0% | |
| ! | AAACAGAGAAGTCTTTTACA+TGG | - | chr3_2:46979649-46979668 | Msa0407860:intron | 30.0% |
| TTACATGGTTGTTTGAAAGT+TGG | - | chr3_2:46979664-46979683 | Msa0407860:intron | 30.0% | |
| ! | CTAAGGTATTTCCTAATACT+CGG | - | chr3_2:46979760-46979779 | Msa0407860:intron | 30.0% |
| ! | TTGAAGATTTTGTGGAAGAT+TGG | - | chr3_2:46979901-46979920 | Msa0407860:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | + | chr3_2:46979971-46979990 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr3_2:46979976-46979995 | Msa0407860:intron | 30.0% | |
| !!! | ATATGAAGACCTTTTTTGCT+AGG | - | chr3_2:46980012-46980031 | Msa0407860:intron | 30.0% |
| TGTATTCATCCTAGCAAAAA+AGG | + | chr3_2:46980024-46980043 | None:intergenic | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr3_2:46980299-46980318 | Msa0407860:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr3_2:46980300-46980319 | Msa0407860:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr3_2:46980364-46980383 | Msa0407860:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr3_2:46980408-46980427 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr3_2:46980442-46980461 | Msa0407860:CDS | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr3_2:46980504-46980523 | Msa0407860:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | - | chr3_2:46980529-46980548 | Msa0407860:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr3_2:46980645-46980664 | None:intergenic | 30.0% |
| ! | ACGTCATTTGCTAAAAAAGA+AGG | - | chr3_2:46978925-46978944 | Msa0407860:CDS | 30.0% |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr3_2:46978988-46979007 | Msa0407860:CDS | 30.0% | |
| TGTCATTACTATCAACATGT+TGG | + | chr3_2:46979014-46979033 | None:intergenic | 30.0% | |
| TTACAATCAGTTCTTGATGT+TGG | + | chr3_2:46979081-46979100 | None:intergenic | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | - | chr3_2:46979080-46979099 | Msa0407860:intron | 30.0% | |
| AATGTAATGATAGGCCATTT+GGG | + | chr3_2:46979138-46979157 | None:intergenic | 30.0% | |
| AAATGTAATGATAGGCCATT+TGG | + | chr3_2:46979139-46979158 | None:intergenic | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr3_2:46979161-46979180 | Msa0407860:intron | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr3_2:46979193-46979212 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr3_2:46979190-46979209 | Msa0407860:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr3_2:46979206-46979225 | Msa0407860:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr3_2:46979207-46979226 | Msa0407860:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr3_2:46979296-46979315 | Msa0407860:intron | 30.0% | |
| ! | CTTTCTCTGATAGAGATTTT+TGG | - | chr3_2:46979319-46979338 | Msa0407860:intron | 30.0% |
| AGATCTCTGATCTAAAAATC+TGG | - | chr3_2:46979353-46979372 | Msa0407860:intron | 30.0% | |
| TGATCTAAAAATCTGGATGT+TGG | - | chr3_2:46979360-46979379 | Msa0407860:intron | 30.0% | |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr3_2:46979478-46979497 | Msa0407860:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr3_2:46979504-46979523 | Msa0407860:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | + | chr3_2:46979588-46979607 | None:intergenic | 30.0% | |
| ! | AAACAGAGAAGTCTTTTACA+TGG | - | chr3_2:46979649-46979668 | Msa0407860:intron | 30.0% |
| TTACATGGTTGTTTGAAAGT+TGG | - | chr3_2:46979664-46979683 | Msa0407860:intron | 30.0% | |
| ! | CTAAGGTATTTCCTAATACT+CGG | - | chr3_2:46979760-46979779 | Msa0407860:intron | 30.0% |
| ! | TTGAAGATTTTGTGGAAGAT+TGG | - | chr3_2:46979901-46979920 | Msa0407860:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | + | chr3_2:46979971-46979990 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr3_2:46979976-46979995 | Msa0407860:intron | 30.0% | |
| !!! | ATATGAAGACCTTTTTTGCT+AGG | - | chr3_2:46980012-46980031 | Msa0407860:intron | 30.0% |
| TGTATTCATCCTAGCAAAAA+AGG | + | chr3_2:46980024-46980043 | None:intergenic | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr3_2:46980299-46980318 | Msa0407860:intron | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr3_2:46980300-46980319 | Msa0407860:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr3_2:46980364-46980383 | Msa0407860:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr3_2:46980408-46980427 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr3_2:46980442-46980461 | Msa0407860:CDS | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr3_2:46980504-46980523 | Msa0407860:CDS | 30.0% |
| GCTAATATTGGCATTATATG+TGG | - | chr3_2:46980529-46980548 | Msa0407860:CDS | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr3_2:46980645-46980664 | None:intergenic | 30.0% |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr3_2:46979248-46979267 | Msa0407860:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr3_2:46979249-46979268 | Msa0407860:intron | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr3_2:46979619-46979638 | None:intergenic | 35.0% | |
| GTTGTTTGAAAGTTGGCTAA+TGG | - | chr3_2:46979671-46979690 | Msa0407860:intron | 35.0% | |
| GGAAGATTGGAACCAAATAA+TGG | - | chr3_2:46979914-46979933 | Msa0407860:intron | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr3_2:46979951-46979970 | Msa0407860:intron | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr3_2:46980118-46980137 | Msa0407860:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr3_2:46980378-46980397 | Msa0407860:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr3_2:46980379-46980398 | Msa0407860:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr3_2:46980517-46980536 | Msa0407860:CDS | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr3_2:46979248-46979267 | Msa0407860:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr3_2:46979249-46979268 | Msa0407860:intron | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr3_2:46979619-46979638 | None:intergenic | 35.0% | |
| GTTGTTTGAAAGTTGGCTAA+TGG | - | chr3_2:46979671-46979690 | Msa0407860:intron | 35.0% | |
| GGAAGATTGGAACCAAATAA+TGG | - | chr3_2:46979914-46979933 | Msa0407860:intron | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr3_2:46979951-46979970 | Msa0407860:intron | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr3_2:46980118-46980137 | Msa0407860:intron | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr3_2:46980378-46980397 | Msa0407860:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr3_2:46980379-46980398 | Msa0407860:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr3_2:46980517-46980536 | Msa0407860:CDS | 35.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr3_2:46979121-46979140 | Msa0407860:intron | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr3_2:46979210-46979229 | Msa0407860:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr3_2:46979211-46979230 | Msa0407860:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr3_2:46979212-46979231 | Msa0407860:intron | 40.0% | |
| ! | AAACATTGCAGCGACTTTTC+CGG | + | chr3_2:46979283-46979302 | None:intergenic | 40.0% |
| GCTGCAATGTTTAGCAATGA+AGG | - | chr3_2:46979291-46979310 | Msa0407860:intron | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | + | chr3_2:46979579-46979598 | None:intergenic | 40.0% | |
| TGAAAGTTGGCTAATGGCAA+TGG | - | chr3_2:46979677-46979696 | Msa0407860:intron | 40.0% | |
| GAAAGTTGGCTAATGGCAAT+GGG | - | chr3_2:46979678-46979697 | Msa0407860:intron | 40.0% | |
| GATCAAGATAAGGCAATGTG+CGG | - | chr3_2:46979729-46979748 | Msa0407860:intron | 40.0% | |
| AATGTGCGGAGCAATATCTA+AGG | - | chr3_2:46979743-46979762 | Msa0407860:intron | 40.0% | |
| CATAAACGATGCCGAGTATT+AGG | + | chr3_2:46979774-46979793 | None:intergenic | 40.0% | |
| CTAGGATGAATACAACACAG+AGG | - | chr3_2:46980030-46980049 | Msa0407860:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr3_2:46980280-46980299 | Msa0407860:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr3_2:46980292-46980311 | None:intergenic | 40.0% |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr3_2:46979121-46979140 | Msa0407860:intron | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr3_2:46979210-46979229 | Msa0407860:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr3_2:46979211-46979230 | Msa0407860:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr3_2:46979212-46979231 | Msa0407860:intron | 40.0% | |
| ! | AAACATTGCAGCGACTTTTC+CGG | + | chr3_2:46979283-46979302 | None:intergenic | 40.0% |
| GCTGCAATGTTTAGCAATGA+AGG | - | chr3_2:46979291-46979310 | Msa0407860:intron | 40.0% | |
| AATCCAGTAAATGGCGCAAA+TGG | + | chr3_2:46979579-46979598 | None:intergenic | 40.0% | |
| TGAAAGTTGGCTAATGGCAA+TGG | - | chr3_2:46979677-46979696 | Msa0407860:intron | 40.0% | |
| GAAAGTTGGCTAATGGCAAT+GGG | - | chr3_2:46979678-46979697 | Msa0407860:intron | 40.0% | |
| GATCAAGATAAGGCAATGTG+CGG | - | chr3_2:46979729-46979748 | Msa0407860:intron | 40.0% | |
| AATGTGCGGAGCAATATCTA+AGG | - | chr3_2:46979743-46979762 | Msa0407860:intron | 40.0% | |
| CATAAACGATGCCGAGTATT+AGG | + | chr3_2:46979774-46979793 | None:intergenic | 40.0% | |
| CTAGGATGAATACAACACAG+AGG | - | chr3_2:46980030-46980049 | Msa0407860:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr3_2:46980280-46980299 | Msa0407860:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr3_2:46980292-46980311 | None:intergenic | 40.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr3_2:46979218-46979237 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | - | chr3_2:46979573-46979592 | Msa0407860:intron | 45.0% |
| CTCGGCATCGTTTATGTTTG+TGG | - | chr3_2:46979778-46979797 | Msa0407860:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr3_2:46980102-46980121 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr3_2:46980391-46980410 | None:intergenic | 45.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr3_2:46979218-46979237 | None:intergenic | 45.0% |
| ! | ATGCCATTTGCGCCATTTAC+TGG | - | chr3_2:46979573-46979592 | Msa0407860:intron | 45.0% |
| CTCGGCATCGTTTATGTTTG+TGG | - | chr3_2:46979778-46979797 | Msa0407860:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr3_2:46980102-46980121 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr3_2:46980391-46980410 | None:intergenic | 45.0% | |
| ! | ATTGCAGCGACTTTTCCGGT+AGG | + | chr3_2:46979279-46979298 | None:intergenic | 50.0% |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr3_2:46979484-46979503 | Msa0407860:intron | 50.0% |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr3_2:46980262-46980281 | Msa0407860:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr3_2:46980392-46980411 | Msa0407860:CDS | 50.0% | |
| ! | ATTGCAGCGACTTTTCCGGT+AGG | + | chr3_2:46979279-46979298 | None:intergenic | 50.0% |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr3_2:46979484-46979503 | Msa0407860:intron | 50.0% |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr3_2:46980262-46980281 | Msa0407860:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr3_2:46980392-46980411 | Msa0407860:CDS | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr3_2:46979261-46979280 | Msa0407860:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr3_2:46979488-46979507 | Msa0407860:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr3_2:46979261-46979280 | Msa0407860:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr3_2:46979488-46979507 | Msa0407860:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 46978848 | 46980684 | 46978848 | ID=Msa0407860;Name=Msa0407860 |
| chr3_2 | mRNA | 46978848 | 46980684 | 46978848 | ID=Msa0407860-mRNA-1;Parent=Msa0407860;Name=Msa0407860-mRNA-1;_AED=0.23;_eAED=0.34;_QI=0|0|0|1|0|0.33|3|0|182 |
| chr3_2 | exon | 46980606 | 46980684 | 46980606 | ID=Msa0407860-mRNA-1:exon:9034;Parent=Msa0407860-mRNA-1 |
| chr3_2 | exon | 46980350 | 46980585 | 46980350 | ID=Msa0407860-mRNA-1:exon:9033;Parent=Msa0407860-mRNA-1 |
| chr3_2 | exon | 46978848 | 46979081 | 46978848 | ID=Msa0407860-mRNA-1:exon:9032;Parent=Msa0407860-mRNA-1 |
| chr3_2 | CDS | 46980606 | 46980684 | 46980606 | ID=Msa0407860-mRNA-1:cds;Parent=Msa0407860-mRNA-1 |
| chr3_2 | CDS | 46980350 | 46980585 | 46980350 | ID=Msa0407860-mRNA-1:cds;Parent=Msa0407860-mRNA-1 |
| chr3_2 | CDS | 46978848 | 46979081 | 46978848 | ID=Msa0407860-mRNA-1:cds;Parent=Msa0407860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
