AlfalfaGEDB | Msa0408600

M. sativa cultivar zhongmu-4 / Msa0408600

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0408600	XP_013459813.1	98.319	238	4	0	1	238	1	238	1.59e-175	494

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0408600	A0A072UVJ3	98.319	238	4	0	1	238	1	238	7.61e-176	494

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0408600	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0408600	MtrunA17_Chr3g0099331	98.319	238	4	0	1	238	1	238	1.46e-179	494
Msa0408600	MtrunA17_Chr4g0057971	56.250	240	102	1	4	240	6	245	2.78e-100	293

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0408600	AT5G63280.1	55.020	249	98	3	26	260	23	271	2.45e-98	289
Msa0408600	AT5G40710.1	62.245	196	74	0	43	238	44	239	7.48e-94	277
Msa0408600	AT5G40710.2	64.706	153	54	0	43	195	44	196	2.73e-75	229

Showing 1 to 3 of 3 entries

Previous1Next

Find 83 sgRNAs with CRISPR-Local

Find 601 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAATCAAATGCTG+AGG	0.649523	3_2:-48519996	Msa0408600:CDS
AAAGTAACAGTGTATCTGAC+GGG	0.582718	3_2:-48519891	Msa0408600:three_prime_UTR
AACACGTGGCAAATTCTAAT+AGG	0.326262	3_2:-48524321	Msa0408600:five_prime_UTR
AACAGGTTGAGAGCTTCTAA+AGG	0.522436	3_2:+48519921	None:intergenic
AAGAAATAAGCATATATGTG+AGG	0.634147	3_2:-48521726	Msa0408600:intron
AAGAACAATGAATAAGATTT+TGG	0.184207	3_2:-48524148	Msa0408600:exon
AAGTTGTGATGTAAACATAC+AGG	0.559796	3_2:+48514320	None:intergenic
AATCCACGGCCACACCACAT+TGG	0.511319	3_2:+48519676	None:intergenic
AATGTTATTGTTCAGAATTC+TGG	0.162180	3_2:-48523206	Msa0408600:intron
ACAAAATCTAAGCCTGTGTT+TGG	0.380893	3_2:+48519591	None:intergenic

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATACTTACATCATCAATGTG+TGG	+	chr3_2:48514557-48514576	None:intergenic	30.0%
GTAATTGAATGTAGCTACAT+AGG	-	chr3_2:48515269-48515288	Msa0408600:intron	30.0%
CAAGCATATAAACCAAGAAA+AGG	+	chr3_2:48515361-48515380	None:intergenic	30.0%
TTGATCAAATAACTAGTTGG+TGG	-	chr3_2:48515914-48515933	Msa0408600:intron	30.0%
AAACCGAAAAAAAACCAGTT+TGG	-	chr3_2:48515939-48515958	Msa0408600:intron	30.0%
TACTTCAATCTAATCCAAAC+TGG	+	chr3_2:48515956-48515975	None:intergenic	30.0%
ATTAGATTGAAGTAATCGGA+TGG	-	chr3_2:48515962-48515981	Msa0408600:intron	30.0%
TTAATTACAAGTGTCAGTGT+CGG	+	chr3_2:48516144-48516163	None:intergenic	30.0%
GGAAGTAAAATTTCAGGATT+TGG	+	chr3_2:48516449-48516468	None:intergenic	30.0%
GATGATGCTAAATATGAAAG+TGG	+	chr3_2:48516484-48516503	None:intergenic	30.0%

Showing 1 to 10 of 601 entries

Previous1 2 3 4 5…61Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	48514295	48524353	48514295	ID=Msa0408600;Name=Msa0408600
chr3_2	mRNA	48514295	48524353	48514295	ID=Msa0408600-mRNA-1;Parent=Msa0408600;Name=Msa0408600-mRNA-1;_AED=0.11;_eAED=0.11;_QI=190\|0.88\|0.9\|1\|0.88\|0.8\|10\|582\|260
chr3_2	exon	48514295	48514499	48514295	ID=Msa0408600-mRNA-1:exon:9452;Parent=Msa0408600-mRNA-1
chr3_2	exon	48519581	48520026	48519581	ID=Msa0408600-mRNA-1:exon:9451;Parent=Msa0408600-mRNA-1
chr3_2	exon	48520152	48520205	48520152	ID=Msa0408600-mRNA-1:exon:9450;Parent=Msa0408600-mRNA-1
chr3_2	exon	48521433	48521506	48521433	ID=Msa0408600-mRNA-1:exon:9449;Parent=Msa0408600-mRNA-1
chr3_2	exon	48521595	48521652	48521595	ID=Msa0408600-mRNA-1:exon:9448;Parent=Msa0408600-mRNA-1
chr3_2	exon	48521727	48521849	48521727	ID=Msa0408600-mRNA-1:exon:9447;Parent=Msa0408600-mRNA-1
chr3_2	exon	48522789	48522998	48522789	ID=Msa0408600-mRNA-1:exon:9446;Parent=Msa0408600-mRNA-1
chr3_2	exon	48523129	48523213	48523129	ID=Msa0408600-mRNA-1:exon:9445;Parent=Msa0408600-mRNA-1
chr3_2	exon	48523622	48523647	48523622	ID=Msa0408600-mRNA-1:exon:9444;Parent=Msa0408600-mRNA-1
chr3_2	exon	48524080	48524353	48524080	ID=Msa0408600-mRNA-1:exon:9443;Parent=Msa0408600-mRNA-1
chr3_2	five_prime_UTR	48524164	48524353	48524164	ID=Msa0408600-mRNA-1:five_prime_utr;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48524080	48524163	48524080	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48523622	48523647	48523622	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48523129	48523213	48523129	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48522789	48522998	48522789	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48521727	48521849	48521727	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48521595	48521652	48521595	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48521433	48521506	48521433	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48520152	48520205	48520152	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	CDS	48519958	48520026	48519958	ID=Msa0408600-mRNA-1:cds;Parent=Msa0408600-mRNA-1
chr3_2	three_prime_UTR	48519581	48519957	48519581	ID=Msa0408600-mRNA-1:three_prime_utr;Parent=Msa0408600-mRNA-1
chr3_2	three_prime_UTR	48514295	48514499	48514295	ID=Msa0408600-mRNA-1:three_prime_utr;Parent=Msa0408600-mRNA-1

Gene Sequence

>Msa0408600

ATGAATAAGATTTTGGTTTGGTTTCAACAATTTGTCGTGTTCTTGTTGCTTACAAGGGTTTCTTCACTTCCACACATTGATGATGGCCATGTAGATTCAGATGCTGCAAGAATTCTGGATCAGGAGCAGAGTGGCGATCATCAAATACATTGCTCTAGAGAAAGAAGTAGAATAGCTTGGAAGATCGTTCAAGAGTATTTGACGACATTTGTGGAGAAAGAAAAATATAATATCTCAAGAAGGTGCAGGCTTCACCCTGACAATGATATATATAGAGATCAGGAACAACATAAATCTCATATAGATATAAATGAATGGCAGTGTGGATACTGTAAGAAAACTTTCTACGAAGAGAAACATCTTGATCAACATTTTGACAACAGACACTCCAATTTACTTAATTTGAAAGAAAGCCGGTGCTTAGCAGATGTATGTGGAGCACTGCACTGTGACCATGAAATTAATTCTGGGTCAAAAAAATCAAAGTGCAATCCTGCTGCTGCAGCAAGAAATAAGCATATATGTGAGACCATAGCTGATAGTTGTTTTCCAGTTAACGAGGGTCCTGCAGCGAGCCGGCTTCATGAATTCTTCTTGCATCAATTCTGTGATGCTCACACCTGCACTGGACGTGGAAAGCCTTTCTCCAGAGGGCGCAGGAAAAAGACAAATGTGTTCTACATAGTTGCCTCCATTTTTCTTGTGATGTTGTTGAGGATTGAAAAAGGAAAATCAAATGCTGAGGCGTGTCTCACAAGCCGGCCGAAAAAAAAGCCATCATAA

Protein sequence

>Msa0408600

MNKILVWFQQFVVFLLLTRVSSLPHIDDGHVDSDAARILDQEQSGDHQIHCSRERSRIAWKIVQEYLTTFVEKEKYNISRRCRLHPDNDIYRDQEQHKSHIDINEWQCGYCKKTFYEEKHLDQHFDNRHSNLLNLKESRCLADVCGALHCDHEINSGSKKSKCNPAAAARNKHICETIADSCFPVNEGPAASRLHEFFLHQFCDAHTCTGRGKPFSRGRRKKTNVFYIVASIFLVMLLRIEKGKSNAEACLTSRPKKKPS*