AlfalfaGEDB | Msa0409890

M. sativa cultivar zhongmu-4 / Msa0409890

KEGG: K08867
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409890	XP_003600252.3	96.899	129	4	0	2	130	169	297	5.39e-85	260

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409890	sp\|Q6ICW6\|WNK11_ARATH	78.992	119	25	0	2	120	174	292	1.66e-66	206

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409890	A0A396INP8	96.899	129	4	0	2	130	169	297	2.57e-85	260

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409890	MtrunA17_Chr3g0101091	96.899	129	4	0	2	130	169	297	4.96e-89	260
Msa0409890	MtrunA17_Chr3g0101081	96.899	129	4	0	2	130	169	297	4.96e-89	260
Msa0409890	MtrunA17_Chr3g0101111	96.875	128	4	0	2	129	169	296	1.70e-88	259
Msa0409890	MtrunA17_Chr7g0225201	89.844	128	13	0	2	129	170	297	1.74e-80	239
Msa0409890	MtrunA17_Chr3g0132681	88.095	126	15	0	2	127	170	295	1.09e-77	231
Msa0409890	MtrunA17_Chr5g0445271	86.207	116	16	0	2	117	170	285	7.84e-72	217
Msa0409890	MtrunA17_Chr5g0447731	77.236	123	28	0	2	124	166	288	1.99e-68	207
Msa0409890	MtrunA17_Chr7g0273851	68.548	124	36	2	2	123	167	289	1.07e-49	168
Msa0409890	MtrunA17_Chr1g0190951	66.935	124	38	2	2	123	167	289	2.77e-48	164
Msa0409890	MtrunA17_Chr7g0244601	59.836	122	49	0	2	123	171	292	2.45e-47	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409890	AT5G55560.1	78.992	119	25	0	2	120	174	292	1.69e-67	206
Msa0409890	AT3G48260.2	65.517	116	40	0	2	117	70	185	4.43e-50	164
Msa0409890	AT3G48260.1	65.517	116	40	0	2	117	165	280	2.40e-49	164
Msa0409890	AT3G04910.3	67.742	124	37	2	2	123	41	163	1.98e-48	163
Msa0409890	AT3G04910.2	67.742	124	37	2	2	123	144	266	4.39e-48	163
Msa0409890	AT3G04910.1	67.742	124	37	2	2	123	167	289	5.78e-48	163
Msa0409890	AT1G49160.7	64.103	117	41	1	2	118	44	159	2.01e-45	152
Msa0409890	AT1G49160.6	64.103	117	41	1	2	118	44	159	2.01e-45	152
Msa0409890	AT1G49160.4	64.103	117	41	1	2	118	44	159	2.01e-45	152
Msa0409890	AT3G18750.4	63.793	116	41	1	2	117	153	267	3.02e-45	154

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Find 24 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTCTCGCTCAACCA+AGG	0.579858	3_2:-51141090	Msa0409890:CDS
AAAGTGTCTCGCTCAACCAA+GGG	0.644670	3_2:-51141089	Msa0409890:CDS
AAGGGCTAGACCTTCTGCTG+AGG	0.666215	3_2:-51141071	Msa0409890:CDS
AATGTATATTAGGTTAAGAT+TGG	0.380565	3_2:-51141385	Msa0409890:intron
ACATTGTCACATTCACTATA+TGG	0.341582	3_2:+51141199	None:intergenic
AGCTCTGGTGCCATAAATTC+CGG	0.461898	3_2:+51141301	None:intergenic
ATATACAAGAAGGTGACTTC+AGG	0.446476	3_2:-51141169	Msa0409890:CDS
ATGGTAGACATATACTCATT+TGG	0.414002	3_2:-51141256	Msa0409890:CDS
CATTCAGCGCATTCAGTTCT+AGG	0.181449	3_2:-51141328	Msa0409890:CDS
CTTAGGTTTGGCAGCAATTG+TGG	0.415298	3_2:-51141359	Msa0409890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCAATCAAACCTCAATTT+AGG	+	chr3_2:51141200-51141219	None:intergenic	30.0%
TATTAAACATATTACGCACG+CGG	+	chr3_2:51141360-51141379	None:intergenic	30.0%
TCTTGATCAAAGTATGACTA+TGG	-	chr3_2:51141405-51141424	Msa0409890:intron	30.0%
ATTTATATGTTGCGACACTA+GGG	+	chr3_2:51141449-51141468	None:intergenic	30.0%
AATTTATATGTTGCGACACT+AGG	+	chr3_2:51141450-51141469	None:intergenic	30.0%
TAGTGTCGCAACATATAAAT+TGG	-	chr3_2:51141449-51141468	Msa0409890:intron	30.0%
AGTGTCGCAACATATAAATT+GGG	-	chr3_2:51141450-51141469	Msa0409890:intron	30.0%
ATAACCTACTTATTGAGACT+TGG	+	chr3_2:51141530-51141549	None:intergenic	30.0%
TGTAGAGCCATAAAAATGTT+AGG	-	chr3_2:51141642-51141661	Msa0409890:intron	30.0%
TTTGTTGAAACTGATCTAAC+CGG	-	chr3_2:51141946-51141965	Msa0409890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	51141006	51142884	51141006	ID=Msa0409890;Name=Msa0409890
chr3_2	mRNA	51141006	51142884	51141006	ID=Msa0409890-mRNA-1;Parent=Msa0409890;Name=Msa0409890-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|0\|0\|0.5\|0\|0.5\|2\|0\|130
chr3_2	exon	51142882	51142884	51142882	ID=Msa0409890-mRNA-1:exon:10087;Parent=Msa0409890-mRNA-1
chr3_2	exon	51141006	51141395	51141006	ID=Msa0409890-mRNA-1:exon:10086;Parent=Msa0409890-mRNA-1
chr3_2	CDS	51142882	51142884	51142882	ID=Msa0409890-mRNA-1:cds;Parent=Msa0409890-mRNA-1
chr3_2	CDS	51141006	51141395	51141006	ID=Msa0409890-mRNA-1:cds;Parent=Msa0409890-mRNA-1

Gene Sequence

>Msa0409890

ATGGTTAAGATTGGTGACTTAGGTTTGGCAGCAATTGTGGGAAAGAATCATTCAGCGCATTCAGTTCTAGGCACACCGGAATTTATGGCACCAGAGCTATATGAAGAGGATTACACAGAAATGGTAGACATATACTCATTTGGAATGTTAGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGACTTCAGGTGTGAGACCGCAATCCTTGAACAAGATAAAAGATGTAGAAGTGAAGACTTTCATCGAAAAGTGTCTCGCTCAACCAAGGGCTAGACCTTCTGCTGAGGAATTGCTAAAGGATCCTTTTTTTGATGATGTTGAGTACGATGAAAACGACGATGTTGATTACTAA

Protein sequence

>Msa0409890

MVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEEDYTEMVDIYSFGMLVLEMVTLEIPYSECDNVAKIYKKVTSGVRPQSLNKIKDVEVKTFIEKCLAQPRARPSAEELLKDPFFDDVEYDENDDVDY*