Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411210 | TQD68854.1 | 72.093 | 86 | 23 | 1 | 89 | 174 | 30 | 114 | 1.76e-36 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411210 | sp|Q683C9|AUR2_ARATH | 80.556 | 72 | 14 | 0 | 89 | 160 | 114 | 185 | 3.58e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411210 | A0A540K3Q6 | 72.093 | 86 | 23 | 1 | 89 | 174 | 30 | 114 | 8.42e-37 | 135 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411210 | MtrunA17_Chr3g0140631 | 70.000 | 90 | 26 | 1 | 89 | 177 | 132 | 221 | 2.83e-37 | 132 |
| Msa0411210 | MtrunA17_Chr8g0351491 | 51.111 | 90 | 43 | 1 | 89 | 177 | 111 | 200 | 8.80e-25 | 98.6 |
| Msa0411210 | MtrunA17_Chr3g0125381 | 49.474 | 95 | 44 | 2 | 87 | 177 | 45 | 139 | 2.05e-24 | 96.3 |
| Msa0411210 | MtrunA17_Chr8g0353621 | 48.936 | 94 | 47 | 1 | 85 | 177 | 101 | 194 | 8.41e-24 | 95.9 |
| Msa0411210 | MtrunA17_Chr3g0114511 | 42.683 | 82 | 42 | 2 | 82 | 158 | 117 | 198 | 3.27e-12 | 65.1 |
| Msa0411210 | MtrunA17_Chr1g0205421 | 41.304 | 92 | 40 | 3 | 97 | 174 | 114 | 205 | 4.53e-12 | 64.7 |
| Msa0411210 | MtrunA17_Chr3g0091421 | 43.038 | 79 | 37 | 2 | 97 | 167 | 114 | 192 | 1.65e-11 | 62.0 |
| Msa0411210 | MtrunA17_Chr8g0346071 | 44.615 | 65 | 33 | 1 | 97 | 158 | 120 | 184 | 1.80e-11 | 62.8 |
| Msa0411210 | MtrunA17_Chr8g0346081 | 44.615 | 65 | 33 | 1 | 97 | 158 | 120 | 184 | 2.12e-11 | 62.8 |
| Msa0411210 | MtrunA17_Chr3g0091311 | 42.667 | 75 | 39 | 1 | 88 | 158 | 105 | 179 | 3.43e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411210 | AT2G25880.1 | 80.556 | 72 | 14 | 0 | 89 | 160 | 120 | 191 | 3.20e-37 | 132 |
| Msa0411210 | AT4G32830.1 | 80.556 | 72 | 14 | 0 | 89 | 160 | 126 | 197 | 6.19e-37 | 131 |
| Msa0411210 | AT2G25880.4 | 80.556 | 72 | 14 | 0 | 89 | 160 | 133 | 204 | 6.45e-37 | 131 |
| Msa0411210 | AT2G25880.3 | 80.556 | 72 | 14 | 0 | 89 | 160 | 181 | 252 | 2.92e-36 | 130 |
| Msa0411210 | AT2G45490.2 | 52.688 | 93 | 38 | 2 | 91 | 177 | 114 | 206 | 6.54e-25 | 99.0 |
| Msa0411210 | AT2G45490.1 | 52.688 | 93 | 38 | 2 | 91 | 177 | 114 | 206 | 1.04e-24 | 99.0 |
| Msa0411210 | AT2G25880.2 | 77.143 | 35 | 8 | 0 | 126 | 160 | 125 | 159 | 9.84e-13 | 65.9 |
| Msa0411210 | AT1G73690.1 | 58.696 | 46 | 19 | 0 | 92 | 137 | 108 | 153 | 7.44e-12 | 64.3 |
| Msa0411210 | AT4G14580.1 | 41.176 | 85 | 42 | 2 | 82 | 158 | 107 | 191 | 6.65e-11 | 61.6 |
| Msa0411210 | AT5G21326.1 | 45.070 | 71 | 34 | 1 | 93 | 158 | 112 | 182 | 7.15e-11 | 61.6 |
| Msa0411210 | AT5G01810.1 | 43.284 | 67 | 33 | 1 | 97 | 158 | 114 | 180 | 8.84e-11 | 61.2 |
| Msa0411210 | AT5G01810.2 | 43.284 | 67 | 33 | 1 | 97 | 158 | 114 | 180 | 8.84e-11 | 61.2 |
| Msa0411210 | AT4G24400.2 | 44.615 | 65 | 33 | 1 | 97 | 158 | 112 | 176 | 9.65e-11 | 61.2 |
Find 39 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACATGTTAAAGATTT+TGG | 0.132587 | 3_2:+53386008 | Msa0411210:CDS |
| GCTTTCCATGGCAGTATATA+AGG | 0.207343 | 3_2:-53385599 | None:intergenic |
| GCTTTCGAGTTTGTGTTTAT+TGG | 0.221634 | 3_2:+53385336 | Msa0411210:intron |
| AAACCAGAGAACCTTCTTAT+TGG | 0.231506 | 3_2:+53385642 | Msa0411210:CDS |
| AAATGTGTTTGTTCTGTTGT+AGG | 0.328747 | 3_2:+53384590 | None:intergenic |
| GGTCGTTAGACCAATATATT+AGG | 0.350221 | 3_2:-53390778 | None:intergenic |
| CTCATAGACATAAGACTTCA+AGG | 0.389555 | 3_2:-53386049 | None:intergenic |
| AGTAGTGTATGTTTCATCAT+TGG | 0.403466 | 3_2:+53385569 | Msa0411210:CDS |
| AAACTTAAGCTAGCGGACTT+TGG | 0.426034 | 3_2:+53385771 | Msa0411210:CDS |
| CAACACTCTTATCACTGAAC+CGG | 0.465620 | 3_2:-53384783 | None:intergenic |
| GCACCAATAAGAAGGTTCTC+TGG | 0.479972 | 3_2:-53385645 | None:intergenic |
| AATCTCTTCACGTTCATGAC+TGG | 0.483452 | 3_2:-53384827 | None:intergenic |
| CTTTCCATGGCAGTATATAA+GGG | 0.483707 | 3_2:-53385598 | None:intergenic |
| TGATTACCTTCCACCTGGGA+TGG | 0.518845 | 3_2:+53385842 | Msa0411210:CDS |
| CATGTGTGCTGCACATGGTC+CGG | 0.522299 | 3_2:-53385821 | None:intergenic |
| TTAAGCTAGCGGACTTTGGA+TGG | 0.524617 | 3_2:+53385775 | Msa0411210:CDS |
| TGTCTATGAGACAAGTAGTA+AGG | 0.532037 | 3_2:+53386062 | Msa0411210:CDS |
| CTGGGATGGGTATGTTCAGT+TGG | 0.537762 | 3_2:+53385856 | Msa0411210:CDS |
| TCACTTGTGCACCAATAAGA+AGG | 0.556527 | 3_2:-53385653 | None:intergenic |
| CCTCTGAAAGCTATTAGCAC+TGG | 0.561326 | 3_2:-53386188 | None:intergenic |
| TGCATACATTCAATCGCAGC+CGG | 0.563890 | 3_2:+53385802 | Msa0411210:CDS |
| GATTACCTTCCACCTGGGAT+GGG | 0.571192 | 3_2:+53385843 | Msa0411210:CDS |
| TAGGATTAGATATAAAGGAT+TGG | 0.571436 | 3_2:+53390704 | Msa0411210:intron |
| ACACATGATTACCTTCCACC+TGG | 0.578982 | 3_2:+53385837 | Msa0411210:CDS |
| TGTGTATGACATGCTTTCCA+TGG | 0.585656 | 3_2:-53385611 | None:intergenic |
| CGTGCCCTTATATACTGCCA+TGG | 0.608317 | 3_2:+53385594 | Msa0411210:CDS |
| TCAAAGCAATTGCTGATGCA+AGG | 0.608456 | 3_2:+53384680 | Msa0411210:CDS |
| ACATACCCATCCCAGGTGGA+AGG | 0.625505 | 3_2:-53385848 | None:intergenic |
| ATGGAAAGCATGTCATACAC+AGG | 0.627089 | 3_2:+53385613 | Msa0411210:CDS |
| CAACTGAACATACCCATCCC+AGG | 0.631602 | 3_2:-53385855 | None:intergenic |
| ATAGAAAGTGTAATAATACA+AGG | 0.636240 | 3_2:-53386302 | None:intergenic |
| AGAGATTCAAGCTGATCTTG+AGG | 0.649444 | 3_2:+53384843 | Msa0411210:CDS |
| GTTCAGTGATAAGAGTGTTG+AGG | 0.650552 | 3_2:+53384786 | Msa0411210:CDS |
| TCAGGGTAAACTTAAGCTAG+CGG | 0.660725 | 3_2:+53385764 | Msa0411210:intron |
| GTAATCATGTGTGCTGCACA+TGG | 0.662502 | 3_2:-53385826 | None:intergenic |
| CACATGATTACCTTCCACCT+GGG | 0.667423 | 3_2:+53385838 | Msa0411210:CDS |
| CCAGTGCTAATAGCTTTCAG+AGG | 0.672692 | 3_2:+53386188 | Msa0411210:CDS |
| TGGAAAGCATGTCATACACA+GGG | 0.705400 | 3_2:+53385614 | Msa0411210:CDS |
| CTGAACATACCCATCCCAGG+TGG | 0.731337 | 3_2:-53385852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATTTAGAAAAAAAAA+TGG | + | chr3_2:53386854-53386873 | Msa0411210:intron | 10.0% |
| !! | TATATATTAATCAAATCTTA+TGG | + | chr3_2:53387637-53387656 | Msa0411210:intron | 10.0% |
| !! | AAATATAGAACTAAAATTTA+TGG | + | chr3_2:53387909-53387928 | Msa0411210:intron | 10.0% |
| !!! | TTTTTCATACTTTTTATGTT+AGG | + | chr3_2:53385885-53385904 | Msa0411210:CDS | 15.0% |
| !!! | TTTTTTCTTTTCTTTATGTT+CGG | + | chr3_2:53386114-53386133 | Msa0411210:intron | 15.0% |
| !! | AATTGATGTATTTAAATTGA+GGG | - | chr3_2:53386559-53386578 | None:intergenic | 15.0% |
| !!! | AATTTTCTAATAATAAAGAC+CGG | - | chr3_2:53386842-53386861 | None:intergenic | 15.0% |
| !!! | TTTATTGATTTCAATGATAA+AGG | - | chr3_2:53387062-53387081 | None:intergenic | 15.0% |
| !! | TAAATATGATATGATACAAA+TGG | + | chr3_2:53387356-53387375 | Msa0411210:intron | 15.0% |
| !! | ATATGTACAATTAAATATCA+TGG | - | chr3_2:53387447-53387466 | None:intergenic | 15.0% |
| !!! | TCATTAAATCTTTTAACATT+TGG | - | chr3_2:53388326-53388345 | None:intergenic | 15.0% |
| !! | CAAAATTCCATATATTATAT+GGG | - | chr3_2:53388596-53388615 | None:intergenic | 15.0% |
| !! | TCAAAATTCCATATATTATA+TGG | - | chr3_2:53388597-53388616 | None:intergenic | 15.0% |
| !! | TCATTTGATTATATTATTCA+TGG | - | chr3_2:53388938-53388957 | None:intergenic | 15.0% |
| !! | ATAATATAATCAAATGATAG+AGG | + | chr3_2:53388941-53388960 | Msa0411210:intron | 15.0% |
| !!! | AATTTTTATATGAATTGGTT+GGG | - | chr3_2:53388994-53389013 | None:intergenic | 15.0% |
| !!! | GATTGAATTTTTATATGAAT+TGG | - | chr3_2:53388999-53389018 | None:intergenic | 15.0% |
| !!! | TATTAATTAAAAGTGTATTG+TGG | - | chr3_2:53389182-53389201 | None:intergenic | 15.0% |
| !!! | TCAAATGCATTTTATTTTAA+AGG | - | chr3_2:53389691-53389710 | None:intergenic | 15.0% |
| !!! | AGATGAAATTGAATCTTTTT+TGG | + | chr3_2:53384632-53384651 | Msa0411210:CDS | 20.0% |
| !! | TCAAAATTGCTTATTACAAA+TGG | - | chr3_2:53384909-53384928 | None:intergenic | 20.0% |
| !!! | TAAACTATGAGTAACTTTTT+CGG | + | chr3_2:53385003-53385022 | Msa0411210:intron | 20.0% |
| !! | CTAAAAACAAAAACATATGA+TGG | - | chr3_2:53385509-53385528 | None:intergenic | 20.0% |
| !!! | CATCATATGTTTTTGTTTTT+AGG | + | chr3_2:53385507-53385526 | Msa0411210:intron | 20.0% |
| !!! | TGTTTCTTTTATGATTCTTT+TGG | + | chr3_2:53385695-53385714 | Msa0411210:intron | 20.0% |
| !!! | TACATACATGTTAAAGATTT+TGG | + | chr3_2:53386008-53386027 | Msa0411210:CDS | 20.0% |
| !!! | CATGTTAAAGATTTTGTTTT+TGG | + | chr3_2:53386091-53386110 | Msa0411210:intron | 20.0% |
| !!! | TAAATTTATTTTCATGCAAC+AGG | + | chr3_2:53386142-53386161 | Msa0411210:intron | 20.0% |
| !!! | ATAGAAAGTGTAATAATACA+AGG | - | chr3_2:53386305-53386324 | None:intergenic | 20.0% |
| !! | ACAATATGTATTAATTTCGT+CGG | - | chr3_2:53386417-53386436 | None:intergenic | 20.0% |
| !! | GAATTGATGTATTTAAATTG+AGG | - | chr3_2:53386560-53386579 | None:intergenic | 20.0% |
| !!! | ATATGTTTTTTAATGTTGTC+AGG | - | chr3_2:53386650-53386669 | None:intergenic | 20.0% |
| !! | TTACTCAATTAACAACATAT+TGG | + | chr3_2:53386726-53386745 | Msa0411210:intron | 20.0% |
| !! | GTTATATTACATATTTCCAT+TGG | + | chr3_2:53386801-53386820 | Msa0411210:intron | 20.0% |
| !!! | TGTGATAATGTTAAATTGAT+TGG | + | chr3_2:53387092-53387111 | Msa0411210:intron | 20.0% |
| !! | AAATGAAAAATATCATTCCA+TGG | - | chr3_2:53387255-53387274 | None:intergenic | 20.0% |
| !!! | AAACATAATTGTAGTCTTTT+AGG | - | chr3_2:53387577-53387596 | None:intergenic | 20.0% |
| !! | AAAGATAATCACAACATTAT+AGG | + | chr3_2:53387614-53387633 | Msa0411210:intron | 20.0% |
| !!! | ATAAGCACTATTATGTTTTA+TGG | - | chr3_2:53388473-53388492 | None:intergenic | 20.0% |
| !! | GAAAATATTGTAATTGTCAA+TGG | - | chr3_2:53388498-53388517 | None:intergenic | 20.0% |
| !!! | GATCATAAAGTTTTTCTTAT+AGG | - | chr3_2:53388635-53388654 | None:intergenic | 20.0% |
| !! | ACTACTAATAAAAGATTCTT+AGG | + | chr3_2:53388880-53388899 | Msa0411210:intron | 20.0% |
| !! | CTACTAATAAAAGATTCTTA+GGG | + | chr3_2:53388881-53388900 | Msa0411210:intron | 20.0% |
| !!! | GAATTTTTATATGAATTGGT+TGG | - | chr3_2:53388995-53389014 | None:intergenic | 20.0% |
| !! | TGATATTAATTATGGTGTTT+AGG | - | chr3_2:53389142-53389161 | None:intergenic | 20.0% |
| !! | CATAATTAATATCACCTTAT+GGG | + | chr3_2:53389148-53389167 | Msa0411210:intron | 20.0% |
| !! | AATCCAAAATTGATATACAT+AGG | + | chr3_2:53389346-53389365 | Msa0411210:intron | 20.0% |
| !! | TAGATATATTGTTTCAAATG+TGG | - | chr3_2:53389811-53389830 | None:intergenic | 20.0% |
| !!! | GATTTTGATGAATTTCGATT+TGG | + | chr3_2:53384748-53384767 | Msa0411210:intron | 25.0% |
| ! | TGCTACAAAATAGACTAATA+AGG | - | chr3_2:53385110-53385129 | None:intergenic | 25.0% |
| !!! | TATTAGTCTATTTTGTAGCA+TGG | + | chr3_2:53385110-53385129 | Msa0411210:intron | 25.0% |
| !! | TTTTAGTGAGATCCTTTAAT+TGG | + | chr3_2:53385133-53385152 | Msa0411210:intron | 25.0% |
| ! | ATTATGGATTTCTCAATCTT+AGG | + | chr3_2:53385242-53385261 | Msa0411210:intron | 25.0% |
| ! | AAGAAACAATAGTCTAAGTA+TGG | - | chr3_2:53385683-53385702 | None:intergenic | 25.0% |
| ! | TGAAAATCTTCTTCATTATC+AGG | + | chr3_2:53385746-53385765 | Msa0411210:intron | 25.0% |
| ! | GAAAATCTTCTTCATTATCA+GGG | + | chr3_2:53385747-53385766 | Msa0411210:intron | 25.0% |
| ! | CAAGGAAAAAAATCCATATA+AGG | - | chr3_2:53385949-53385968 | None:intergenic | 25.0% |
| ! | GAACATCTTCTAAACATATT+TGG | + | chr3_2:53386911-53386930 | Msa0411210:intron | 25.0% |
| ! | AAATATCATACATTGAGCAT+AGG | + | chr3_2:53387227-53387246 | Msa0411210:intron | 25.0% |
| ! | ATTATCCACACAAATTTCAT+TGG | + | chr3_2:53387387-53387406 | Msa0411210:intron | 25.0% |
| ! | AAGGTTCAATTCATTATGAA+TGG | - | chr3_2:53387491-53387510 | None:intergenic | 25.0% |
| ! | CAGATTTATGGTTTATGATA+AGG | - | chr3_2:53387688-53387707 | None:intergenic | 25.0% |
| ! | CTTATCATAAACCATAAATC+TGG | + | chr3_2:53387686-53387705 | Msa0411210:intron | 25.0% |
| !! | TGCTTGATTATACTAAGTTT+TGG | - | chr3_2:53387809-53387828 | None:intergenic | 25.0% |
| !!! | TGAATAAGTTTTAGTTTCTC+AGG | - | chr3_2:53388292-53388311 | None:intergenic | 25.0% |
| !! | TGATAATGAAGAATTTGTGT+TGG | - | chr3_2:53388768-53388787 | None:intergenic | 25.0% |
| !! | TAAGTTTGTGTCTTTATTTG+AGG | - | chr3_2:53389060-53389079 | None:intergenic | 25.0% |
| ! | CCATAAGGTGATATTAATTA+TGG | - | chr3_2:53389150-53389169 | None:intergenic | 25.0% |
| ! | CCATAATTAATATCACCTTA+TGG | + | chr3_2:53389147-53389166 | Msa0411210:intron | 25.0% |
| ! | TTCATCAATGAGATCTTATA+AGG | - | chr3_2:53389234-53389253 | None:intergenic | 25.0% |
| ! | TTATAAGATCTCATTGATGA+AGG | + | chr3_2:53389233-53389252 | Msa0411210:intron | 25.0% |
| !! | AAAATCAAAGCTTCATTTTC+TGG | - | chr3_2:53389273-53389292 | None:intergenic | 25.0% |
| !! | ATATCAATTTTGGATTGCAT+TGG | - | chr3_2:53389342-53389361 | None:intergenic | 25.0% |
| !! | TGTCCTATGTATATCAATTT+TGG | - | chr3_2:53389352-53389371 | None:intergenic | 25.0% |
| ! | ACAAAATGTGATATATTGAG+AGG | - | chr3_2:53389462-53389481 | None:intergenic | 25.0% |
| !! | TCTCAATATATCACATTTTG+TGG | + | chr3_2:53389461-53389480 | Msa0411210:intron | 25.0% |
| !! | CTCTACTTAAACTTTTCATT+AGG | + | chr3_2:53389530-53389549 | Msa0411210:intron | 25.0% |
| ! | TTCGATTAAATACTCAGTTA+TGG | - | chr3_2:53389644-53389663 | None:intergenic | 25.0% |
| !! | GATTTAGTGATTTTTGCATT+TGG | - | chr3_2:53389860-53389879 | None:intergenic | 25.0% |
| ! | GAAAACTACAAAATCAGAAT+TGG | + | chr3_2:53390035-53390054 | Msa0411210:intron | 25.0% |
| ! | ATTGCAAAATATTAGAAACG+TGG | + | chr3_2:53390140-53390159 | Msa0411210:intron | 25.0% |
| ! | TCAATAGAGAGAATAGATTA+GGG | + | chr3_2:53390324-53390343 | Msa0411210:intron | 25.0% |
| ! | TGTATTACCAATGATAGAAT+TGG | - | chr3_2:53390473-53390492 | None:intergenic | 25.0% |
| ! | CCAGTATTGCATTTAATTAA+TGG | - | chr3_2:53390504-53390523 | None:intergenic | 25.0% |
| ! | CCATTAATTAAATGCAATAC+TGG | + | chr3_2:53390501-53390520 | Msa0411210:intron | 25.0% |
| ! | TATATCACAAGTAGCATTTA+AGG | - | chr3_2:53390590-53390609 | None:intergenic | 25.0% |
| ! | TTTGCTAGGATTAGATATAA+AGG | + | chr3_2:53390699-53390718 | Msa0411210:intron | 25.0% |
| ! | TAGGATTAGATATAAAGGAT+TGG | + | chr3_2:53390704-53390723 | Msa0411210:intron | 25.0% |
| !!! | CTACTTTTAGCCTAATATAT+TGG | + | chr3_2:53390768-53390787 | Msa0411210:three_prime_UTR | 25.0% |
| !! | CTAATAAGGTTCTAGAAACA+AGG | - | chr3_2:53385096-53385115 | None:intergenic | 30.0% |
| TATTCTTGCATGCCAATTAA+AGG | - | chr3_2:53385148-53385167 | None:intergenic | 30.0% | |
| AATCCATAATGAAAACACAG+TGG | - | chr3_2:53385232-53385251 | None:intergenic | 30.0% | |
| !!! | AAGCTTTGTGGTTTTGATAA+TGG | + | chr3_2:53385397-53385416 | Msa0411210:CDS | 30.0% |
| TTGTGCTTTAGTGTTTACTA+TGG | + | chr3_2:53385428-53385447 | Msa0411210:intron | 30.0% | |
| TTGCCTAAAAACAACCAAAA+GGG | - | chr3_2:53385546-53385565 | None:intergenic | 30.0% | |
| ATTGCCTAAAAACAACCAAA+AGG | - | chr3_2:53385547-53385566 | None:intergenic | 30.0% | |
| AGTAGTGTATGTTTCATCAT+TGG | + | chr3_2:53385569-53385588 | Msa0411210:CDS | 30.0% | |
| AAACAATAGTCTAAGTATGG+AGG | - | chr3_2:53385680-53385699 | None:intergenic | 30.0% | |
| CATACATAACCATCAATATC+CGG | + | chr3_2:53386519-53386538 | Msa0411210:intron | 30.0% | |
| TGATGTATTTAAATTGAGGG+TGG | - | chr3_2:53386556-53386575 | None:intergenic | 30.0% | |
| AGCAAATTGACTAACATAGT+TGG | + | chr3_2:53386582-53386601 | Msa0411210:intron | 30.0% | |
| ACGTCTGTATATCAAATTAC+AGG | + | chr3_2:53386700-53386719 | Msa0411210:intron | 30.0% | |
| TTCTAATAATAAAGACCGGA+GGG | - | chr3_2:53386838-53386857 | None:intergenic | 30.0% | |
| TTTCTAATAATAAAGACCGG+AGG | - | chr3_2:53386839-53386858 | None:intergenic | 30.0% | |
| ! | TTTTCTTGTCATGGTCAAAT+AGG | + | chr3_2:53386978-53386997 | Msa0411210:intron | 30.0% |
| ! | TATACAAAACTCCCTCTTTT+TGG | + | chr3_2:53387020-53387039 | Msa0411210:intron | 30.0% |
| ! | ATACAAAACTCCCTCTTTTT+GGG | + | chr3_2:53387021-53387040 | Msa0411210:intron | 30.0% |
| TGATTATGTACCCAAAAAGA+GGG | - | chr3_2:53387034-53387053 | None:intergenic | 30.0% | |
| TTGATTATGTACCCAAAAAG+AGG | - | chr3_2:53387035-53387054 | None:intergenic | 30.0% | |
| CTTTCACTTTCTATAGGTTA+AGG | + | chr3_2:53387284-53387303 | Msa0411210:intron | 30.0% | |
| !! | GTATAAGCATCGATTGTAAA+AGG | + | chr3_2:53387330-53387349 | Msa0411210:intron | 30.0% |
| TTTCACCAATGAAATTTGTG+TGG | - | chr3_2:53387395-53387414 | None:intergenic | 30.0% | |
| TTCATTGGTGAAATCATGAA+TGG | + | chr3_2:53387402-53387421 | Msa0411210:intron | 30.0% | |
| AACTTCACTGTTGTATTTCA+AGG | - | chr3_2:53387510-53387529 | None:intergenic | 30.0% | |
| ATCTAGGAAAACCAGATTTA+TGG | - | chr3_2:53387700-53387719 | None:intergenic | 30.0% | |
| AATTGTGGTGAAATTCATCT+AGG | - | chr3_2:53387716-53387735 | None:intergenic | 30.0% | |
| !!! | CACCACAATTATTTTAGATC+TGG | + | chr3_2:53387726-53387745 | Msa0411210:intron | 30.0% |
| ! | GACCAGATCTAAAATAATTG+TGG | - | chr3_2:53387731-53387750 | None:intergenic | 30.0% |
| GAGAAGACTTCAAAATAGAA+AGG | + | chr3_2:53387881-53387900 | Msa0411210:intron | 30.0% | |
| ACCACTTAAATTTCAGACAA+AGG | + | chr3_2:53387935-53387954 | Msa0411210:intron | 30.0% | |
| ! | TCCTTTGTCTGAAATTTAAG+TGG | - | chr3_2:53387939-53387958 | None:intergenic | 30.0% |
| TTGTGGCTATTGTTTAATAG+GGG | - | chr3_2:53388015-53388034 | None:intergenic | 30.0% | |
| GTTGTGGCTATTGTTTAATA+GGG | - | chr3_2:53388016-53388035 | None:intergenic | 30.0% | |
| TGTTGTGGCTATTGTTTAAT+AGG | - | chr3_2:53388017-53388036 | None:intergenic | 30.0% | |
| TGTCTCTGATTTAAATGTTG+TGG | - | chr3_2:53388032-53388051 | None:intergenic | 30.0% | |
| AATAGCAACTTACAAATCTG+AGG | + | chr3_2:53388086-53388105 | Msa0411210:intron | 30.0% | |
| ! | TGTCATTGTGTCTATTTTAC+AGG | - | chr3_2:53388359-53388378 | None:intergenic | 30.0% |
| ! | TTTCGATTTTTGAACAGCAA+AGG | - | chr3_2:53388385-53388404 | None:intergenic | 30.0% |
| ! | AAATTTGAAGTGTCAGTATG+AGG | - | chr3_2:53388555-53388574 | None:intergenic | 30.0% |
| TATGCAACAACACATACAAA+TGG | + | chr3_2:53388850-53388869 | Msa0411210:intron | 30.0% | |
| ! | CTTCTCTTTTACTACTTTCA+GGG | - | chr3_2:53388911-53388930 | None:intergenic | 30.0% |
| ACACTACTTCTTTATCCATA+GGG | - | chr3_2:53389099-53389118 | None:intergenic | 30.0% | |
| TACACTACTTCTTTATCCAT+AGG | - | chr3_2:53389100-53389119 | None:intergenic | 30.0% | |
| TAAAGAAGTAGTGTACAACA+TGG | + | chr3_2:53389105-53389124 | Msa0411210:intron | 30.0% | |
| ATCAATGAGATCTTATAAGG+TGG | - | chr3_2:53389231-53389250 | None:intergenic | 30.0% | |
| GAGCAACAATAATCAAAGAA+GGG | + | chr3_2:53389493-53389512 | Msa0411210:intron | 30.0% | |
| ! | CAGTTTTTCGTTTATGGTTT+AGG | - | chr3_2:53389957-53389976 | None:intergenic | 30.0% |
| ! | TAGAAGCAGTTTTTCGTTTA+TGG | - | chr3_2:53389963-53389982 | None:intergenic | 30.0% |
| ! | TTTTGTAGTTTTCTGCATAG+AGG | - | chr3_2:53390028-53390047 | None:intergenic | 30.0% |
| !!! | AGACCCAGTATGAATTTTTT+TGG | + | chr3_2:53390060-53390079 | Msa0411210:intron | 30.0% |
| !!! | GACCCAGTATGAATTTTTTT+GGG | + | chr3_2:53390061-53390080 | Msa0411210:intron | 30.0% |
| !!! | ACCCAGTATGAATTTTTTTG+GGG | + | chr3_2:53390062-53390081 | Msa0411210:intron | 30.0% |
| GTCAATAGAGAGAATAGATT+AGG | + | chr3_2:53390323-53390342 | Msa0411210:intron | 30.0% | |
| AAGAAGAGATGAGATGAAAT+GGG | + | chr3_2:53390349-53390368 | Msa0411210:intron | 30.0% | |
| TAAGTGAATTCACACTGAAT+AGG | + | chr3_2:53390425-53390444 | Msa0411210:intron | 30.0% | |
| AAGTGAATTCACACTGAATA+GGG | + | chr3_2:53390426-53390445 | Msa0411210:intron | 30.0% | |
| TACCAATGATAGAATTGGAA+TGG | - | chr3_2:53390468-53390487 | None:intergenic | 30.0% | |
| TGCATTTAATTAATGGTGTG+CGG | - | chr3_2:53390497-53390516 | None:intergenic | 30.0% | |
| TCATCTTGATTGAAGATCAA+CGG | + | chr3_2:53390618-53390637 | Msa0411210:intron | 30.0% | |
| CAAGGTAGCTAATTTCGATT+TGG | + | chr3_2:53384698-53384717 | Msa0411210:intron | 35.0% | |
| !! | GTTCTAGAAACAAGGAAGTT+AGG | - | chr3_2:53385088-53385107 | None:intergenic | 35.0% |
| CATGCAAGAATATCACACTA+AGG | + | chr3_2:53385156-53385175 | Msa0411210:intron | 35.0% | |
| CATCATTGGATTCATTGTTG+TGG | + | chr3_2:53385287-53385306 | Msa0411210:intron | 35.0% | |
| !! | GCTTTCGAGTTTGTGTTTAT+TGG | + | chr3_2:53385336-53385355 | Msa0411210:intron | 35.0% |
| !!! | GCGATTTTTTTGAAGCTTTG+TGG | + | chr3_2:53385385-53385404 | Msa0411210:CDS | 35.0% |
| AAAACATATGATGGTCGACA+TGG | - | chr3_2:53385500-53385519 | None:intergenic | 35.0% | |
| ! | GCAATCTATTACAACCCTTT+TGG | + | chr3_2:53385529-53385548 | Msa0411210:intron | 35.0% |
| !!! | CAACCCTTTTGGTTGTTTTT+AGG | + | chr3_2:53385540-53385559 | Msa0411210:intron | 35.0% |
| CTTTCCATGGCAGTATATAA+GGG | - | chr3_2:53385601-53385620 | None:intergenic | 35.0% | |
| AAACCAGAGAACCTTCTTAT+TGG | + | chr3_2:53385642-53385661 | Msa0411210:CDS | 35.0% | |
| GGCGAAGTACAAACTATTAA+AGG | - | chr3_2:53385928-53385947 | None:intergenic | 35.0% | |
| AGTTTGTACTTCGCCTTATA+TGG | + | chr3_2:53385933-53385952 | Msa0411210:intron | 35.0% | |
| TGGAACAAACAATGAACACA+AGG | - | chr3_2:53385967-53385986 | None:intergenic | 35.0% | |
| TTGTGTTCATTGTTTGTTCC+AGG | + | chr3_2:53385966-53385985 | Msa0411210:intron | 35.0% | |
| !! | CTTCAAGGTGTTCTTTTCTT+TGG | - | chr3_2:53386037-53386056 | None:intergenic | 35.0% |
| CTCATAGACATAAGACTTCA+AGG | - | chr3_2:53386052-53386071 | None:intergenic | 35.0% | |
| TGTCTATGAGACAAGTAGTA+AGG | + | chr3_2:53386062-53386081 | Msa0411210:CDS | 35.0% | |
| CATATCTCTATTATAGCCGA+GGG | - | chr3_2:53386778-53386797 | None:intergenic | 35.0% | |
| ACATATCTCTATTATAGCCG+AGG | - | chr3_2:53386779-53386798 | None:intergenic | 35.0% | |
| ! | GTACCACATTTTTCTTGTCA+TGG | + | chr3_2:53386969-53386988 | Msa0411210:intron | 35.0% |
| TGACCATGACAAGAAAAATG+TGG | - | chr3_2:53386975-53386994 | None:intergenic | 35.0% | |
| ! | AACATGAAGCTCTATGCTTT+TGG | - | chr3_2:53387127-53387146 | None:intergenic | 35.0% |
| CAAGTTAAAAGGCAAGAAGT+TGG | - | chr3_2:53387161-53387180 | None:intergenic | 35.0% | |
| AATCAAGCGAGCAAGTTAAA+AGG | - | chr3_2:53387172-53387191 | None:intergenic | 35.0% | |
| ! | TTTTTATGCAGCACTTTGTG+AGG | - | chr3_2:53387210-53387229 | None:intergenic | 35.0% |
| CCTATAGAAAGTGAAAGACT+AGG | - | chr3_2:53387281-53387300 | None:intergenic | 35.0% | |
| ! | CCTAGTCTTTCACTTTCTAT+AGG | + | chr3_2:53387278-53387297 | Msa0411210:intron | 35.0% |
| !! | TGAGTAGTGTTGTTTGATTC+AGG | - | chr3_2:53387762-53387781 | None:intergenic | 35.0% |
| ! | GGTCAAGTACAAGCTTTAAT+TGG | - | chr3_2:53388158-53388177 | None:intergenic | 35.0% |
| ! | GTATGCGTTGAATGTTGTTT+AGG | - | chr3_2:53388223-53388242 | None:intergenic | 35.0% |
| GAGTAATAAGTTGCAACACT+TGG | + | chr3_2:53388249-53388268 | Msa0411210:intron | 35.0% | |
| CGACTCAAACACAAAAATAG+AGG | - | chr3_2:53388716-53388735 | None:intergenic | 35.0% | |
| ! | TCTTTTACTACTTTCAGGGT+TGG | - | chr3_2:53388907-53388926 | None:intergenic | 35.0% |
| ! | GCTTCTCTTTTACTACTTTC+AGG | - | chr3_2:53388912-53388931 | None:intergenic | 35.0% |
| ! | ATTGCATTAGCAAAGTACCT+TGG | + | chr3_2:53389376-53389395 | Msa0411210:intron | 35.0% |
| AAGATAATGTCTTCTCACCA+AGG | - | chr3_2:53389396-53389415 | None:intergenic | 35.0% | |
| ! | TCACATTTTGTGGTTGTTGT+AGG | + | chr3_2:53389471-53389490 | Msa0411210:intron | 35.0% |
| GGAGCAACAATAATCAAAGA+AGG | + | chr3_2:53389492-53389511 | Msa0411210:intron | 35.0% | |
| ! | TAGGCTTCTCTGAAAATTTG+AGG | + | chr3_2:53389549-53389568 | Msa0411210:intron | 35.0% |
| CAGATCTACACACATCAATA+TGG | + | chr3_2:53389921-53389940 | Msa0411210:intron | 35.0% | |
| CCCCCAAAAAAATTCATACT+GGG | - | chr3_2:53390066-53390085 | None:intergenic | 35.0% | |
| !!! | CCCAGTATGAATTTTTTTGG+GGG | + | chr3_2:53390063-53390082 | Msa0411210:intron | 35.0% |
| TCCCCCAAAAAAATTCATAC+TGG | - | chr3_2:53390067-53390086 | None:intergenic | 35.0% | |
| GAAGAAGAGATGAGATGAAA+TGG | + | chr3_2:53390348-53390367 | Msa0411210:intron | 35.0% | |
| AGAAGAGATGAGATGAAATG+GGG | + | chr3_2:53390350-53390369 | Msa0411210:intron | 35.0% | |
| TGAATAGGGTTAAAGAGGTT+TGG | + | chr3_2:53390440-53390459 | Msa0411210:intron | 35.0% | |
| TGCCATTCCAATTCTATCAT+TGG | + | chr3_2:53390463-53390482 | Msa0411210:intron | 35.0% | |
| CCATAGATCTCCTTAATTGT+GGG | - | chr3_2:53390529-53390548 | None:intergenic | 35.0% | |
| GACCTAAAACATCAAGCATA+TGG | - | chr3_2:53390568-53390587 | None:intergenic | 35.0% | |
| TTGATTGGAGCCAAAAAAGT+AGG | + | chr3_2:53390647-53390666 | Msa0411210:intron | 35.0% | |
| TGATTGGAGCCAAAAAAGTA+GGG | + | chr3_2:53390648-53390667 | Msa0411210:intron | 35.0% | |
| AGCCAAAAAAGTAGGGTTAA+GGG | + | chr3_2:53390655-53390674 | Msa0411210:intron | 35.0% | |
| !!! | AACCCTTAACCCTACTTTTT+TGG | - | chr3_2:53390660-53390679 | None:intergenic | 35.0% |
| AAAAAAGTAGGGTTAAGGGT+TGG | + | chr3_2:53390659-53390678 | Msa0411210:intron | 35.0% | |
| AAAAAGTAGGGTTAAGGGTT+GGG | + | chr3_2:53390660-53390679 | Msa0411210:intron | 35.0% | |
| TCAAAGCAATTGCTGATGCA+AGG | + | chr3_2:53384680-53384699 | Msa0411210:CDS | 40.0% | |
| ! | GATTTGGTTGTGATTGTAGC+CGG | + | chr3_2:53384764-53384783 | Msa0411210:intron | 40.0% |
| CAACACTCTTATCACTGAAC+CGG | - | chr3_2:53384786-53384805 | None:intergenic | 40.0% | |
| !! | GTTCAGTGATAAGAGTGTTG+AGG | + | chr3_2:53384786-53384805 | Msa0411210:CDS | 40.0% |
| AATCTCTTCACGTTCATGAC+TGG | - | chr3_2:53384830-53384849 | None:intergenic | 40.0% | |
| AGAGATTCAAGCTGATCTTG+AGG | + | chr3_2:53384843-53384862 | Msa0411210:CDS | 40.0% | |
| !! | GTGCCACTGTGTTTTCATTA+TGG | + | chr3_2:53385226-53385245 | Msa0411210:intron | 40.0% |
| CTCAATCTTAGGACTGTTTC+AGG | + | chr3_2:53385253-53385272 | Msa0411210:intron | 40.0% | |
| GCTTTCCATGGCAGTATATA+AGG | - | chr3_2:53385602-53385621 | None:intergenic | 40.0% | |
| TGTGTATGACATGCTTTCCA+TGG | - | chr3_2:53385614-53385633 | None:intergenic | 40.0% | |
| ! | ATGGAAAGCATGTCATACAC+AGG | + | chr3_2:53385613-53385632 | Msa0411210:CDS | 40.0% |
| ! | TGGAAAGCATGTCATACACA+GGG | + | chr3_2:53385614-53385633 | Msa0411210:CDS | 40.0% |
| TCACTTGTGCACCAATAAGA+AGG | - | chr3_2:53385656-53385675 | None:intergenic | 40.0% | |
| TCAGGGTAAACTTAAGCTAG+CGG | + | chr3_2:53385764-53385783 | Msa0411210:intron | 40.0% | |
| !! | AAACTTAAGCTAGCGGACTT+TGG | + | chr3_2:53385771-53385790 | Msa0411210:CDS | 40.0% |
| TTATGTTAGGTGTACTTCGC+AGG | + | chr3_2:53385898-53385917 | Msa0411210:intron | 40.0% | |
| CTGCACTTAACATTAACACC+TGG | - | chr3_2:53385987-53386006 | None:intergenic | 40.0% | |
| GCTTGTATCTACCGCAAAAT+CGG | + | chr3_2:53386604-53386623 | Msa0411210:intron | 40.0% | |
| TAACAAACCAAGTGTTCCCT+CGG | + | chr3_2:53386759-53386778 | Msa0411210:intron | 40.0% | |
| !! | GAGGGAGTATTTAACTCCAA+TGG | - | chr3_2:53386820-53386839 | None:intergenic | 40.0% |
| TTGGAGTTAAATACTCCCTC+CGG | + | chr3_2:53386820-53386839 | Msa0411210:intron | 40.0% | |
| !! | AACTTGCTCGCTTGATTTTG+TGG | + | chr3_2:53387175-53387194 | Msa0411210:intron | 40.0% |
| TACATTGAGCATAGGATCCA+TGG | + | chr3_2:53387235-53387254 | Msa0411210:intron | 40.0% | |
| ACTGCTACATCTTATGCAAG+AGG | - | chr3_2:53388134-53388153 | None:intergenic | 40.0% | |
| CAAATCACATGAATAGGGGA+TGG | - | chr3_2:53388183-53388202 | None:intergenic | 40.0% | |
| CATCCCCTATTCATGTGATT+TGG | + | chr3_2:53388181-53388200 | Msa0411210:intron | 40.0% | |
| CTGCCAAATCACATGAATAG+GGG | - | chr3_2:53388187-53388206 | None:intergenic | 40.0% | |
| GCTGCCAAATCACATGAATA+GGG | - | chr3_2:53388188-53388207 | None:intergenic | 40.0% | |
| TGCTGCCAAATCACATGAAT+AGG | - | chr3_2:53388189-53388208 | None:intergenic | 40.0% | |
| ! | CGTTGAATGTTGTTTAGGAG+AGG | - | chr3_2:53388218-53388237 | None:intergenic | 40.0% |
| GATAAGAGGTTCTCTTGAAG+AGG | - | chr3_2:53388669-53388688 | None:intergenic | 40.0% | |
| GTGATTGAGAGAGAGATAAG+AGG | - | chr3_2:53388683-53388702 | None:intergenic | 40.0% | |
| !! | AGTGTGTCTGTATCGGTTAT+TGG | - | chr3_2:53389310-53389329 | None:intergenic | 40.0% |
| CAACACAAGTGTGTCTGTAT+CGG | - | chr3_2:53389317-53389336 | None:intergenic | 40.0% | |
| TGTTTCAAATGTGGCTGCTA+AGG | - | chr3_2:53389802-53389821 | None:intergenic | 40.0% | |
| ACGAAGGTAAACTACAAGAG+TGG | - | chr3_2:53390104-53390123 | None:intergenic | 40.0% | |
| TGCTGAAGAAAGAATGACGA+AGG | - | chr3_2:53390120-53390139 | None:intergenic | 40.0% | |
| CACACTGAATAGGGTTAAAG+AGG | + | chr3_2:53390435-53390454 | Msa0411210:intron | 40.0% | |
| AATACTGGAGCCCACAATTA+AGG | + | chr3_2:53390516-53390535 | Msa0411210:intron | 40.0% | |
| CCCACAATTAAGGAGATCTA+TGG | + | chr3_2:53390526-53390545 | Msa0411210:intron | 40.0% | |
| GCCATAGATCTCCTTAATTG+TGG | - | chr3_2:53390530-53390549 | None:intergenic | 40.0% | |
| GATCTATGGCTAATAAGCAC+TGG | + | chr3_2:53390540-53390559 | Msa0411210:intron | 40.0% | |
| ! | CGCCATATGCTTGATGTTTT+AGG | + | chr3_2:53390563-53390582 | Msa0411210:intron | 40.0% |
| GATCAACGGCTGAAATTGAT+TGG | + | chr3_2:53390632-53390651 | Msa0411210:intron | 40.0% | |
| GAGCCAAAAAAGTAGGGTTA+AGG | + | chr3_2:53390654-53390673 | Msa0411210:intron | 40.0% | |
| TTAGGGTAAGCATGTTTGCT+AGG | + | chr3_2:53390685-53390704 | Msa0411210:intron | 40.0% | |
| ACAAGGAAGTTAGGAACGCA+TGG | - | chr3_2:53385079-53385098 | None:intergenic | 45.0% | |
| ! | CTTAGGACTGTTTCAGGTGA+TGG | + | chr3_2:53385259-53385278 | Msa0411210:intron | 45.0% |
| ACTCGAAAGCTGCAAACACA+CGG | - | chr3_2:53385326-53385345 | None:intergenic | 45.0% | |
| GCACCAATAAGAAGGTTCTC+TGG | - | chr3_2:53385648-53385667 | None:intergenic | 45.0% | |
| !! | TTAAGCTAGCGGACTTTGGA+TGG | + | chr3_2:53385775-53385794 | Msa0411210:CDS | 45.0% |
| TGCATACATTCAATCGCAGC+CGG | + | chr3_2:53385802-53385821 | Msa0411210:CDS | 45.0% | |
| GTAATCATGTGTGCTGCACA+TGG | - | chr3_2:53385829-53385848 | None:intergenic | 45.0% | |
| ACACATGATTACCTTCCACC+TGG | + | chr3_2:53385837-53385856 | Msa0411210:CDS | 45.0% | |
| CACATGATTACCTTCCACCT+GGG | + | chr3_2:53385838-53385857 | Msa0411210:CDS | 45.0% | |
| ! | CCTCTGAAAGCTATTAGCAC+TGG | - | chr3_2:53386191-53386210 | None:intergenic | 45.0% |
| CCAGTGCTAATAGCTTTCAG+AGG | + | chr3_2:53386188-53386207 | Msa0411210:CDS | 45.0% | |
| CTAACCATATATGACCCGTG+CGG | - | chr3_2:53386364-53386383 | None:intergenic | 45.0% | |
| TAGCATAGGCCGGATATTGA+TGG | - | chr3_2:53386531-53386550 | None:intergenic | 45.0% | |
| AATTGAGGGTGGAGTAGCAT+AGG | - | chr3_2:53386545-53386564 | None:intergenic | 45.0% | |
| ATTATAGCCGAGGGAACACT+TGG | - | chr3_2:53386769-53386788 | None:intergenic | 45.0% | |
| TCTATAGGTTAAGGTCCTGC+TGG | + | chr3_2:53387293-53387312 | Msa0411210:intron | 45.0% | |
| TCACATGAATAGGGGATGGA+AGG | - | chr3_2:53388179-53388198 | None:intergenic | 45.0% | |
| GTTGCAACACTTGGATTGCA+AGG | + | chr3_2:53388258-53388277 | Msa0411210:intron | 45.0% | |
| TTGTTGCATATTCCCTGCGA+TGG | - | chr3_2:53388840-53388859 | None:intergenic | 45.0% | |
| AAGCGACAGTTGTGGTAAAG+GGG | - | chr3_2:53389436-53389455 | None:intergenic | 45.0% | |
| CAAGCGACAGTTGTGGTAAA+GGG | - | chr3_2:53389437-53389456 | None:intergenic | 45.0% | |
| TCAAGCGACAGTTGTGGTAA+AGG | - | chr3_2:53389438-53389457 | None:intergenic | 45.0% | |
| !! | TAGTGGTGCTGCTTCTGTTT+GGG | - | chr3_2:53390170-53390189 | None:intergenic | 45.0% |
| !! | TTAGTGGTGCTGCTTCTGTT+TGG | - | chr3_2:53390171-53390190 | None:intergenic | 45.0% |
| TCTCCTAAGAAGGAGGTTAG+TGG | - | chr3_2:53390187-53390206 | None:intergenic | 45.0% | |
| CTCTTTCTCTCTCTGTCTCT+CGG | - | chr3_2:53390215-53390234 | None:intergenic | 45.0% | |
| AGAGACAGAGAGAGAAAGAG+TGG | + | chr3_2:53390215-53390234 | Msa0411210:intron | 45.0% | |
| AGAGAGAGAGAGAGAGAGAT+GGG | + | chr3_2:53390290-53390309 | Msa0411210:intron | 45.0% | |
| AGTTGTGCGTGACAGAGTAT+AGG | + | chr3_2:53390400-53390419 | Msa0411210:intron | 45.0% | |
| GTTGTGCGTGACAGAGTATA+GGG | + | chr3_2:53390401-53390420 | Msa0411210:intron | 45.0% | |
| AGGGTTAAGGGTTGGGAATT+AGG | + | chr3_2:53390667-53390686 | Msa0411210:intron | 45.0% | |
| GGGTTAAGGGTTGGGAATTA+GGG | + | chr3_2:53390668-53390687 | Msa0411210:intron | 45.0% | |
| !!! | TTTTTATTTTATTTTACAAA+AGG | - | chr3_2:53388525-53388544 | None:intergenic | 5.0% |
| !! | AGGTGATGGTGCTGCATCAT+TGG | + | chr3_2:53385273-53385292 | Msa0411210:intron | 50.0% |
| CGTGCCCTTATATACTGCCA+TGG | + | chr3_2:53385594-53385613 | Msa0411210:CDS | 50.0% | |
| TGATTACCTTCCACCTGGGA+TGG | + | chr3_2:53385842-53385861 | Msa0411210:CDS | 50.0% | |
| GATTACCTTCCACCTGGGAT+GGG | + | chr3_2:53385843-53385862 | Msa0411210:CDS | 50.0% | |
| CAACTGAACATACCCATCCC+AGG | - | chr3_2:53385858-53385877 | None:intergenic | 50.0% | |
| CTGGGATGGGTATGTTCAGT+TGG | + | chr3_2:53385856-53385875 | Msa0411210:CDS | 50.0% | |
| !! | CTTACTTTTGTGCTGCCAGC+AGG | - | chr3_2:53387311-53387330 | None:intergenic | 50.0% |
| GCAAGAGGAACTAGCAGCAA+TGG | - | chr3_2:53388119-53388138 | None:intergenic | 50.0% | |
| AGACAAACACACACGCCCTA+TGG | + | chr3_2:53389081-53389100 | Msa0411210:intron | 50.0% | |
| ! | TTGTGGACTGCGTTCCCATA+AGG | - | chr3_2:53389165-53389184 | None:intergenic | 50.0% |
| AGAGGTTCAAGCGACAGTTG+TGG | - | chr3_2:53389444-53389463 | None:intergenic | 50.0% | |
| GCACCACTAACCTCCTTCTT+AGG | + | chr3_2:53390181-53390200 | Msa0411210:intron | 50.0% | |
| GGATCTCTCTCCTAAGAAGG+AGG | - | chr3_2:53390194-53390213 | None:intergenic | 50.0% | |
| CTCGGATCTCTCTCCTAAGA+AGG | - | chr3_2:53390197-53390216 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+TGG | + | chr3_2:53390271-53390290 | Msa0411210:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGATG+GGG | + | chr3_2:53390291-53390310 | Msa0411210:intron | 50.0% | |
| CATGTGTGCTGCACATGGTC+CGG | - | chr3_2:53385824-53385843 | None:intergenic | 55.0% | |
| ACATACCCATCCCAGGTGGA+AGG | - | chr3_2:53385851-53385870 | None:intergenic | 55.0% | |
| CTGAACATACCCATCCCAGG+TGG | - | chr3_2:53385855-53385874 | None:intergenic | 55.0% | |
| !! | GCTGCTGCTAGCCGATTTTG+CGG | - | chr3_2:53386618-53386637 | None:intergenic | 55.0% |
| TGCATATTCCCTGCGATGGC+TGG | - | chr3_2:53388836-53388855 | None:intergenic | 55.0% | |
| GCTGCCGCACGGGTCATATA+TGG | + | chr3_2:53386357-53386376 | Msa0411210:intron | 60.0% | |
| GAGGGTGGAGTAGCATAGGC+CGG | - | chr3_2:53386541-53386560 | None:intergenic | 60.0% | |
| CAGCTATGCCAGCCATCGCA+GGG | + | chr3_2:53388825-53388844 | Msa0411210:intron | 60.0% | |
| CGTCTACCTGTGCTGCCGCA+CGG | + | chr3_2:53386346-53386365 | Msa0411210:intron | 65.0% | |
| GTCTACCTGTGCTGCCGCAC+GGG | + | chr3_2:53386347-53386366 | Msa0411210:intron | 65.0% | |
| TATGACCCGTGCGGCAGCAC+AGG | - | chr3_2:53386355-53386374 | None:intergenic | 65.0% | |
| GCAGCTATGCCAGCCATCGC+AGG | + | chr3_2:53388824-53388843 | Msa0411210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 53384592 | 53390792 | 53384592 | ID=Msa0411210;Name=Msa0411210 |
| chr3_2 | mRNA | 53384592 | 53390792 | 53384592 | ID=Msa0411210-mRNA-1;Parent=Msa0411210;Name=Msa0411210-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.42|0.5|0.87|0.85|0.75|8|189|226 |
| chr3_2 | exon | 53384592 | 53384701 | 53384592 | ID=Msa0411210-mRNA-1:exon:10679;Parent=Msa0411210-mRNA-1 |
| chr3_2 | exon | 53384783 | 53384864 | 53384783 | ID=Msa0411210-mRNA-1:exon:10680;Parent=Msa0411210-mRNA-1 |
| chr3_2 | exon | 53385337 | 53385418 | 53385337 | ID=Msa0411210-mRNA-1:exon:10681;Parent=Msa0411210-mRNA-1 |
| chr3_2 | exon | 53385562 | 53385671 | 53385562 | ID=Msa0411210-mRNA-1:exon:10682;Parent=Msa0411210-mRNA-1 |
| chr3_2 | exon | 53385768 | 53385908 | 53385768 | ID=Msa0411210-mRNA-1:exon:10683;Parent=Msa0411210-mRNA-1 |
| chr3_2 | exon | 53385988 | 53386083 | 53385988 | ID=Msa0411210-mRNA-1:exon:10684;Parent=Msa0411210-mRNA-1 |
| chr3_2 | exon | 53386164 | 53386334 | 53386164 | ID=Msa0411210-mRNA-1:exon:10685;Parent=Msa0411210-mRNA-1 |
| chr3_2 | exon | 53390715 | 53390792 | 53390715 | ID=Msa0411210-mRNA-1:exon:10686;Parent=Msa0411210-mRNA-1 |
| chr3_2 | CDS | 53384592 | 53384701 | 53384592 | ID=Msa0411210-mRNA-1:cds;Parent=Msa0411210-mRNA-1 |
| chr3_2 | CDS | 53384783 | 53384864 | 53384783 | ID=Msa0411210-mRNA-1:cds;Parent=Msa0411210-mRNA-1 |
| chr3_2 | CDS | 53385337 | 53385418 | 53385337 | ID=Msa0411210-mRNA-1:cds;Parent=Msa0411210-mRNA-1 |
| chr3_2 | CDS | 53385562 | 53385671 | 53385562 | ID=Msa0411210-mRNA-1:cds;Parent=Msa0411210-mRNA-1 |
| chr3_2 | CDS | 53385768 | 53385908 | 53385768 | ID=Msa0411210-mRNA-1:cds;Parent=Msa0411210-mRNA-1 |
| chr3_2 | CDS | 53385988 | 53386083 | 53385988 | ID=Msa0411210-mRNA-1:cds;Parent=Msa0411210-mRNA-1 |
| chr3_2 | CDS | 53386164 | 53386223 | 53386164 | ID=Msa0411210-mRNA-1:cds;Parent=Msa0411210-mRNA-1 |
| chr3_2 | three_prime_UTR | 53386224 | 53386334 | 53386224 | ID=Msa0411210-mRNA-1:three_prime_utr;Parent=Msa0411210-mRNA-1 |
| chr3_2 | three_prime_UTR | 53390715 | 53390792 | 53390715 | ID=Msa0411210-mRNA-1:three_prime_utr;Parent=Msa0411210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
