Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411770 | XP_003600455.1 | 72.727 | 110 | 24 | 2 | 1 | 104 | 168 | 277 | 3.23e-39 | 151 |
| Msa0411770 | XP_003600455.1 | 80.147 | 272 | 47 | 2 | 93 | 357 | 10 | 281 | 1.20e-152 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411770 | sp|Q9XIB4|Y1475_ARATH | 35.606 | 132 | 67 | 3 | 105 | 219 | 49 | 179 | 7.53e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411770 | G8A2Z2 | 72.727 | 110 | 24 | 2 | 1 | 104 | 168 | 277 | 1.54e-39 | 151 |
| Msa0411770 | G8A2Z2 | 80.147 | 272 | 47 | 2 | 93 | 357 | 10 | 281 | 5.72e-153 | 441 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0411770 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411770 | MtrunA17_Chr3g0103181 | 68.864 | 273 | 71 | 5 | 93 | 357 | 13 | 279 | 5.21e-126 | 363 |
| Msa0411770 | MtrunA17_Chr3g0103181 | 66.972 | 109 | 30 | 1 | 2 | 104 | 167 | 275 | 2.48e-39 | 140 |
| Msa0411770 | MtrunA17_Chr3g0103201 | 80.909 | 220 | 35 | 2 | 145 | 357 | 1 | 220 | 5.19e-125 | 358 |
| Msa0411770 | MtrunA17_Chr3g0103201 | 72.727 | 110 | 24 | 2 | 1 | 104 | 107 | 216 | 3.17e-44 | 152 |
| Msa0411770 | MtrunA17_Chr3g0103171 | 68.045 | 266 | 75 | 4 | 101 | 357 | 1 | 265 | 6.91e-123 | 354 |
| Msa0411770 | MtrunA17_Chr3g0103171 | 57.143 | 112 | 40 | 1 | 1 | 104 | 150 | 261 | 1.27e-32 | 122 |
| Msa0411770 | MtrunA17_Chr3g0103191 | 73.554 | 242 | 57 | 2 | 90 | 324 | 10 | 251 | 1.82e-121 | 350 |
| Msa0411770 | MtrunA17_Chr3g0103191 | 64.634 | 82 | 22 | 1 | 1 | 75 | 170 | 251 | 1.08e-26 | 106 |
| Msa0411770 | MtrunA17_Chr3g0103151 | 68.627 | 153 | 40 | 3 | 90 | 235 | 10 | 161 | 9.70e-66 | 205 |
| Msa0411770 | MtrunA17_Chr3g0103161 | 69.421 | 121 | 37 | 0 | 236 | 356 | 2 | 122 | 1.72e-53 | 172 |
| Msa0411770 | MtrunA17_Chr3g0103161 | 70.370 | 108 | 26 | 1 | 2 | 103 | 11 | 118 | 1.86e-44 | 149 |
| Msa0411770 | MtrunA17_Chr1g0163071 | 33.219 | 292 | 148 | 9 | 106 | 357 | 2 | 286 | 1.52e-41 | 147 |
| Msa0411770 | MtrunA17_Chr1g0208771 | 32.990 | 291 | 150 | 8 | 102 | 357 | 9 | 289 | 2.66e-39 | 145 |
| Msa0411770 | MtrunA17_Chr1g0208771 | 26.038 | 265 | 165 | 10 | 103 | 357 | 214 | 457 | 2.94e-15 | 76.6 |
| Msa0411770 | MtrunA17_Chr7g0233561 | 33.016 | 315 | 168 | 13 | 78 | 357 | 5 | 311 | 4.87e-38 | 139 |
| Msa0411770 | MtrunA17_Chr7g0233521 | 34.944 | 269 | 152 | 8 | 105 | 357 | 1 | 262 | 2.18e-36 | 133 |
| Msa0411770 | MtrunA17_Chr8g0390841 | 31.228 | 285 | 156 | 5 | 105 | 357 | 54 | 330 | 3.67e-35 | 134 |
| Msa0411770 | MtrunA17_Chr8g0390841 | 49.231 | 65 | 32 | 1 | 293 | 357 | 454 | 517 | 6.40e-11 | 63.5 |
| Msa0411770 | MtrunA17_Chr3g0131891 | 30.515 | 272 | 167 | 8 | 105 | 357 | 34 | 302 | 1.75e-29 | 115 |
| Msa0411770 | MtrunA17_Chr7g0233541 | 29.032 | 279 | 170 | 7 | 106 | 357 | 2 | 279 | 5.64e-29 | 113 |
| Msa0411770 | MtrunA17_Chr7g0233531 | 29.811 | 265 | 169 | 7 | 106 | 357 | 2 | 262 | 3.75e-27 | 108 |
| Msa0411770 | MtrunA17_Chr1g0163131 | 31.541 | 279 | 152 | 9 | 106 | 354 | 34 | 303 | 1.15e-25 | 105 |
| Msa0411770 | MtrunA17_Chr1g0163181 | 28.723 | 282 | 161 | 10 | 105 | 356 | 20 | 291 | 3.91e-25 | 105 |
| Msa0411770 | MtrunA17_Chr1g0163251 | 29.213 | 267 | 166 | 8 | 105 | 356 | 20 | 278 | 1.90e-24 | 103 |
| Msa0411770 | MtrunA17_Chr7g0233571 | 29.851 | 201 | 103 | 3 | 106 | 277 | 26 | 217 | 2.61e-24 | 99.4 |
| Msa0411770 | MtrunA17_Chr4g0067431 | 29.412 | 289 | 161 | 12 | 105 | 357 | 30 | 311 | 2.58e-22 | 95.9 |
| Msa0411770 | MtrunA17_Chr3g0077451 | 27.799 | 259 | 145 | 6 | 105 | 357 | 11 | 233 | 1.03e-19 | 87.0 |
| Msa0411770 | MtrunA17_Chr1g0163201 | 25.818 | 275 | 172 | 10 | 105 | 356 | 18 | 283 | 1.91e-19 | 89.0 |
| Msa0411770 | MtrunA17_Chr1g0163261 | 24.627 | 268 | 176 | 8 | 105 | 356 | 24 | 281 | 2.40e-19 | 87.4 |
| Msa0411770 | MtrunA17_Chr5g0429931 | 25.385 | 260 | 167 | 5 | 101 | 357 | 6 | 241 | 6.46e-19 | 85.1 |
| Msa0411770 | MtrunA17_Chr3g0077411 | 24.432 | 352 | 205 | 7 | 46 | 357 | 186 | 516 | 1.50e-17 | 84.0 |
| Msa0411770 | MtrunA17_Chr3g0077411 | 25.794 | 252 | 133 | 5 | 105 | 351 | 40 | 242 | 2.89e-13 | 70.9 |
| Msa0411770 | MtrunA17_Chr5g0419201 | 30.380 | 158 | 86 | 4 | 91 | 231 | 15 | 165 | 1.52e-17 | 79.7 |
| Msa0411770 | MtrunA17_Chr1g0163221 | 28.623 | 276 | 161 | 11 | 106 | 357 | 27 | 290 | 4.26e-16 | 78.6 |
| Msa0411770 | MtrunA17_Chr1g0154131 | 25.455 | 275 | 173 | 8 | 106 | 354 | 198 | 466 | 9.77e-16 | 78.2 |
| Msa0411770 | MtrunA17_Chr3g0077421 | 28.696 | 230 | 117 | 9 | 137 | 357 | 4 | 195 | 2.25e-14 | 71.2 |
| Msa0411770 | MtrunA17_Chr3g0077441 | 28.696 | 230 | 117 | 9 | 137 | 357 | 4 | 195 | 2.25e-14 | 71.2 |
| Msa0411770 | MtrunA17_Chr1g0163231 | 23.636 | 275 | 166 | 8 | 105 | 356 | 24 | 277 | 2.81e-14 | 72.4 |
| Msa0411770 | MtrunA17_Chr1g0171611 | 24.242 | 264 | 166 | 7 | 105 | 356 | 24 | 265 | 2.86e-14 | 72.4 |
| Msa0411770 | MtrunA17_Chr1g0163121 | 38.053 | 113 | 56 | 4 | 106 | 207 | 11 | 120 | 5.85e-14 | 68.6 |
| Msa0411770 | MtrunA17_Chr3g0077431 | 26.872 | 227 | 124 | 6 | 137 | 357 | 4 | 194 | 1.93e-13 | 68.6 |
| Msa0411770 | MtrunA17_Chr6g0476181 | 39.623 | 106 | 55 | 3 | 106 | 205 | 2 | 104 | 2.16e-13 | 67.4 |
| Msa0411770 | MtrunA17_Chr1g0154111 | 23.810 | 189 | 122 | 2 | 10 | 176 | 251 | 439 | 2.22e-13 | 71.2 |
| Msa0411770 | MtrunA17_Chr1g0163191 | 33.333 | 93 | 54 | 2 | 105 | 191 | 20 | 110 | 2.78e-13 | 67.0 |
| Msa0411770 | MtrunA17_Chr1g0154161 | 23.616 | 271 | 178 | 7 | 106 | 357 | 46 | 306 | 3.45e-13 | 69.7 |
| Msa0411770 | MtrunA17_Chr1g0162161 | 33.858 | 127 | 70 | 5 | 103 | 218 | 1 | 124 | 5.09e-13 | 66.2 |
| Msa0411770 | MtrunA17_Chr1g0163241 | 31.532 | 111 | 64 | 3 | 101 | 201 | 18 | 126 | 8.58e-13 | 65.9 |
| Msa0411770 | MtrunA17_Chr1g0163161 | 39.216 | 102 | 47 | 4 | 118 | 207 | 1 | 99 | 8.77e-13 | 65.1 |
| Msa0411770 | MtrunA17_Chr1g0163101 | 33.913 | 115 | 61 | 4 | 106 | 208 | 33 | 144 | 6.93e-12 | 63.5 |
| Msa0411770 | MtrunA17_Chr4g0033961 | 28.205 | 117 | 70 | 2 | 105 | 207 | 21 | 137 | 4.02e-11 | 63.9 |
| Msa0411770 | MtrunA17_Chr1g0163141 | 37.374 | 99 | 53 | 3 | 105 | 197 | 10 | 105 | 4.04e-11 | 61.6 |
| Msa0411770 | MtrunA17_Chr1g0162441 | 33.333 | 87 | 52 | 1 | 105 | 185 | 22 | 108 | 4.48e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411770 | AT3G18990.1 | 27.103 | 321 | 160 | 11 | 105 | 357 | 21 | 335 | 1.17e-23 | 100 |
| Msa0411770 | AT3G18990.2 | 28.037 | 321 | 157 | 12 | 105 | 357 | 21 | 335 | 2.37e-23 | 100 |
| Msa0411770 | AT1G49475.1 | 35.606 | 132 | 67 | 3 | 105 | 219 | 49 | 179 | 7.66e-13 | 67.0 |
| Msa0411770 | AT1G49480.3 | 31.538 | 130 | 77 | 5 | 234 | 357 | 97 | 220 | 2.20e-12 | 66.2 |
| Msa0411770 | AT1G49480.1 | 31.538 | 130 | 77 | 5 | 234 | 357 | 97 | 220 | 2.20e-12 | 66.2 |
| Msa0411770 | AT1G49480.2 | 31.538 | 130 | 77 | 5 | 234 | 357 | 97 | 220 | 2.20e-12 | 66.2 |
| Msa0411770 | AT4G01580.1 | 34.188 | 117 | 75 | 2 | 105 | 220 | 45 | 160 | 3.66e-11 | 62.0 |
Find 62 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAACCCCTTTAAAATT+TGG | 0.181999 | 3_2:-54292372 | None:intergenic |
| ACACTAAATGGAAAATTTAT+TGG | 0.195816 | 3_2:+54291628 | Msa0411770:CDS |
| TGTCTCTTTGTAAACTTTCT+TGG | 0.232191 | 3_2:-54291561 | None:intergenic |
| AGACTCCTGATGACACTAAA+TGG | 0.267004 | 3_2:+54291616 | Msa0411770:CDS |
| TCCTGAGCTCTAGCATCTTT+TGG | 0.280232 | 3_2:-54286436 | None:intergenic |
| TATGTAACTGCAGATTTAAA+AGG | 0.322729 | 3_2:+54286635 | Msa0411770:intron |
| TTGATTTGCTTCCAGATGAT+TGG | 0.329110 | 3_2:-54292205 | None:intergenic |
| CGACCACACAAGAAAGTTAG+AGG | 0.346342 | 3_2:+54291933 | Msa0411770:CDS |
| ATTGATAAACAAGAAAGATT+TGG | 0.351442 | 3_2:+54292554 | Msa0411770:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.379721 | 3_2:+54291696 | Msa0411770:CDS |
| AAAGAACTTCATCAATGAAT+TGG | 0.387908 | 3_2:+54286413 | Msa0411770:exon |
| TCCTGAGCTCTAACATCCTT+TGG | 0.395829 | 3_2:-54292129 | None:intergenic |
| CTCTCTTGGACATGGCTGCT+TGG | 0.402665 | 3_2:+54291710 | Msa0411770:CDS |
| TGATTTGCTTCCAGATGATT+GGG | 0.406973 | 3_2:-54292204 | None:intergenic |
| TCTCATACAGCCCAATCATC+TGG | 0.413662 | 3_2:+54292194 | Msa0411770:CDS |
| AGATTTGGTTTGAAAGGGGT+TGG | 0.435761 | 3_2:+54291667 | Msa0411770:CDS |
| AGAGAAAGTGGACTGAAATC+AGG | 0.441039 | 3_2:+54292513 | Msa0411770:CDS |
| TGGTGAGATTTGGTTTGAAA+GGG | 0.445670 | 3_2:+54291662 | Msa0411770:CDS |
| AAAGAACTTCATCAATGAAT+CGG | 0.459762 | 3_2:+54292106 | Msa0411770:CDS |
| GCCGTCGCCTTTCCGCGGGC+TGG | 0.462371 | 3_2:+54292478 | Msa0411770:CDS |
| AGTATGTGATTCTGCAGATT+GGG | 0.463556 | 3_2:+54286678 | Msa0411770:CDS |
| ATGGTGAGATTTGGTTTGAA+AGG | 0.464155 | 3_2:+54291661 | Msa0411770:CDS |
| TCAGGAGTCTTTATCACCAC+TGG | 0.464260 | 3_2:-54291603 | None:intergenic |
| TTCACTTTCGCTTGCAAACA+AGG | 0.476076 | 3_2:-54286774 | None:intergenic |
| AGAATGTGATGCTGCTGATT+GGG | 0.480788 | 3_2:+54292406 | Msa0411770:CDS |
| AAGAATGTGATGCTGCTGAT+TGG | 0.482287 | 3_2:+54292405 | Msa0411770:CDS |
| TACTTATTTGCAAGAGAAAG+TGG | 0.484810 | 3_2:+54292501 | Msa0411770:CDS |
| TCATCTGGAAGCAAATCAAC+TGG | 0.487387 | 3_2:+54292209 | Msa0411770:CDS |
| TAAAGGGGTTATTGAGAACA+AGG | 0.498536 | 3_2:+54292380 | Msa0411770:CDS |
| TGCAGATTGGGAAAAGATCA+TGG | 0.498577 | 3_2:+54286690 | Msa0411770:CDS |
| GCCAAAGGATGTTAGAGCTC+AGG | 0.500995 | 3_2:+54292128 | Msa0411770:CDS |
| CTAACTTTCTTGTGTGGTCG+AGG | 0.505612 | 3_2:-54291930 | None:intergenic |
| AAATGGCCGTCGCCTTTCCG+CGG | 0.508666 | 3_2:+54292473 | Msa0411770:CDS |
| GCCAAAAGATGCTAGAGCTC+AGG | 0.513948 | 3_2:+54286435 | Msa0411770:CDS |
| CCAGCTTACTATCTACTGTA+TGG | 0.515143 | 3_2:-54286516 | None:intergenic |
| TCTTGGACATGGCTGCTTGG+TGG | 0.517847 | 3_2:+54291713 | Msa0411770:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.518126 | 3_2:+54291729 | Msa0411770:CDS |
| AATGGTTTCTATCTATCGGC+GGG | 0.522564 | 3_2:+54286746 | Msa0411770:CDS |
| GAGTATGTGATTCTGCAGAT+TGG | 0.526064 | 3_2:+54286677 | Msa0411770:CDS |
| ACCAGCCCGCGGAAAGGCGA+CGG | 0.528367 | 3_2:-54292479 | None:intergenic |
| TTTACAAAGAGACATGTAGT+TGG | 0.540786 | 3_2:+54291570 | Msa0411770:CDS |
| AATGGCCGTCGCCTTTCCGC+GGG | 0.545483 | 3_2:+54292474 | Msa0411770:CDS |
| GTTTCTATCTATCGGCGGGT+TGG | 0.546695 | 3_2:+54286750 | Msa0411770:CDS |
| TGTGGTCGAGGAGAAACAAA+AGG | 0.547165 | 3_2:-54291918 | None:intergenic |
| AAGTATGTGTACATCAAACT+TGG | 0.555627 | 3_2:-54291757 | None:intergenic |
| TGTATGAGAACTGTGAAGAA+AGG | 0.560242 | 3_2:-54292180 | None:intergenic |
| AGCGAAAGTGAACTGCAACC+AGG | 0.561940 | 3_2:+54286785 | Msa0411770:CDS |
| TCAAAGACACAAACATCTCC+TGG | 0.563620 | 3_2:-54286803 | None:intergenic |
| TGAATGGCTGAATCGGAAGA+AGG | 0.566200 | 3_2:+54291881 | Msa0411770:CDS |
| AAATGGTTTCTATCTATCGG+CGG | 0.576380 | 3_2:+54286745 | Msa0411770:CDS |
| TGCTGATTGGGAAAAGATCA+TGG | 0.586680 | 3_2:+54292418 | Msa0411770:CDS |
| ATAAGTACCAGCCCGCGGAA+AGG | 0.595441 | 3_2:-54292485 | None:intergenic |
| TTCATCAATGAATCGGCCAA+AGG | 0.600573 | 3_2:+54292113 | Msa0411770:CDS |
| TTACTATCTACTGTATGGTG+AGG | 0.604910 | 3_2:-54286511 | None:intergenic |
| AGGAGTTATTGAGAACAAAG+AGG | 0.607683 | 3_2:+54286655 | Msa0411770:CDS |
| AAACCTCTAACTTTCTTGTG+TGG | 0.625711 | 3_2:-54291936 | None:intergenic |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3_2:+54291702 | Msa0411770:CDS |
| GGTGAGATTTGGTTTGAAAG+GGG | 0.635152 | 3_2:+54291663 | Msa0411770:CDS |
| TGCAAATAAGTACCAGCCCG+CGG | 0.652502 | 3_2:-54292490 | None:intergenic |
| AGTTGGTCTATCAAATCCAG+TGG | 0.685587 | 3_2:+54291587 | Msa0411770:CDS |
| TGTGAAGAAAGGATTGCATG+AGG | 0.721141 | 3_2:-54292169 | None:intergenic |
| GAAATTGATCTGTTCTAACG+AGG | 0.726190 | 3_2:+54286718 | Msa0411770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAGCTTTTAAAAAATT+TGG | - | chr3_2:54287235-54287254 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTGACAAAATTT+TGG | + | chr3_2:54287282-54287301 | Msa0411770:intron | 10.0% |
| !!! | AGTTTAATTCTTTTTTTTTT+TGG | - | chr3_2:54287485-54287504 | None:intergenic | 10.0% |
| !!! | AGTTTAATTCTTTTTTTTTT+TGG | - | chr3_2:54287485-54287504 | None:intergenic | 10.0% |
| !! | TGTAAAAAGATAAAATATTA+CGG | + | chr3_2:54288048-54288067 | Msa0411770:intron | 10.0% |
| !! | CTATGAATAATATTAAATTT+AGG | - | chr3_2:54288563-54288582 | None:intergenic | 10.0% |
| !!! | ATTTATTATTTTAGATATGT+AGG | - | chr3_2:54289126-54289145 | None:intergenic | 10.0% |
| !!! | ATAATCTTTTTTTTTTTGAA+GGG | - | chr3_2:54290486-54290505 | None:intergenic | 10.0% |
| !!! | TAGTATAATATAATTTTTTC+GGG | + | chr3_2:54290575-54290594 | Msa0411770:intron | 10.0% |
| !!! | TATTTTGATAACAGTTAATT+TGG | - | chr3_2:54287117-54287136 | None:intergenic | 15.0% |
| !! | ATTAACTGTTATCAAAATAA+TGG | + | chr3_2:54287118-54287137 | Msa0411770:intron | 15.0% |
| !!! | AGCTTTAATAATGAATAATT+TGG | + | chr3_2:54287246-54287265 | Msa0411770:intron | 15.0% |
| !! | AAAATAGTTTAATTCTAACA+TGG | - | chr3_2:54287455-54287474 | None:intergenic | 15.0% |
| !!! | TAATCTTAGCTTTTTTTTTT+TGG | - | chr3_2:54287642-54287661 | None:intergenic | 15.0% |
| !! | AAAATAGTTTAATTCTAACA+TGG | - | chr3_2:54287455-54287474 | None:intergenic | 15.0% |
| !!! | ATAATCTTAGCTTTTTTTTT+TGG | - | chr3_2:54287643-54287662 | None:intergenic | 15.0% |
| !! | GTAAAAAGATAAAATATTAC+GGG | + | chr3_2:54288049-54288068 | Msa0411770:intron | 15.0% |
| !!! | ATTGAGTTTTTTTCTTATTA+AGG | - | chr3_2:54288626-54288645 | None:intergenic | 15.0% |
| !! | TTAATAAGAAAAAAACTCAA+TGG | + | chr3_2:54288625-54288644 | Msa0411770:intron | 15.0% |
| !!! | GTTTAAAATATGATTTCATT+TGG | - | chr3_2:54289612-54289631 | None:intergenic | 15.0% |
| !!! | GAAATCATATTTTAAACTTA+TGG | + | chr3_2:54289615-54289634 | Msa0411770:intron | 15.0% |
| !!! | TTTTTGGTTGTTTAATATTT+TGG | - | chr3_2:54289899-54289918 | None:intergenic | 15.0% |
| !! | TGTCAAAAAAAAAAAGAATT+TGG | + | chr3_2:54290398-54290417 | Msa0411770:intron | 15.0% |
| !! | GTCAAAAAAAAAAAGAATTT+GGG | + | chr3_2:54290399-54290418 | Msa0411770:intron | 15.0% |
| !!! | CATAATCTTTTTTTTTTTGA+AGG | - | chr3_2:54290487-54290506 | None:intergenic | 15.0% |
| !!! | ATATCAATTTTTTGTTGAAA+TGG | + | chr3_2:54290683-54290702 | Msa0411770:intron | 15.0% |
| !! | ATAAAAAATAGTATTTCAGA+AGG | + | chr3_2:54290844-54290863 | Msa0411770:intron | 15.0% |
| !! | GAGTATTAGTATATTTAAAA+GGG | - | chr3_2:54290924-54290943 | None:intergenic | 15.0% |
| !! | TGAGTATTAGTATATTTAAA+AGG | - | chr3_2:54290925-54290944 | None:intergenic | 15.0% |
| !! | CTAAAGTAAATAATACTAAT+AGG | - | chr3_2:54291291-54291310 | None:intergenic | 15.0% |
| !! | ATTTATTGGAAAAAAATCAA+TGG | + | chr3_2:54291642-54291661 | Msa0411770:CDS | 15.0% |
| !! | TTTACAAGAATTGTGAAAAA+AGG | - | chr3_2:54286490-54286509 | None:intergenic | 20.0% |
| !! | TAAAAATGGTTTCTATCTAT+CGG | + | chr3_2:54286742-54286761 | Msa0411770:CDS | 20.0% |
| !! | GTTCATTTAGAAATATTTGA+AGG | + | chr3_2:54287004-54287023 | Msa0411770:intron | 20.0% |
| !! | ACTCTTATTAAAATCATGTT+TGG | + | chr3_2:54287333-54287352 | Msa0411770:intron | 20.0% |
| !! | TATGAGTAAAATGAAATGAA+TGG | + | chr3_2:54287522-54287541 | Msa0411770:intron | 20.0% |
| !! | TAAAATGAAATGAATGGTAA+TGG | + | chr3_2:54287528-54287547 | Msa0411770:intron | 20.0% |
| !!! | AGCTTTTTTTTTTTGGATAA+AGG | - | chr3_2:54287635-54287654 | None:intergenic | 20.0% |
| !! | TATGAGTAAAATGAAATGAA+TGG | + | chr3_2:54287522-54287541 | Msa0411770:intron | 20.0% |
| !! | TAAAATGAAATGAATGGTAA+TGG | + | chr3_2:54287528-54287547 | Msa0411770:intron | 20.0% |
| !!! | TAGCTTTTTTTTTTGGATAA+AGG | - | chr3_2:54287958-54287977 | None:intergenic | 20.0% |
| !!! | ATTTTCATGAAATTAATCCT+AGG | + | chr3_2:54288165-54288184 | Msa0411770:intron | 20.0% |
| !! | CTTGAAAAATAATGCAATAT+AGG | - | chr3_2:54288251-54288270 | None:intergenic | 20.0% |
| !!! | TTTTAACAAGAGAGATATAT+CGG | - | chr3_2:54288685-54288704 | None:intergenic | 20.0% |
| !! | TCCTCAATTGAATTAAAATA+TGG | + | chr3_2:54289184-54289203 | Msa0411770:intron | 20.0% |
| !!! | ACCATATTTTAATTCAATTG+AGG | - | chr3_2:54289188-54289207 | None:intergenic | 20.0% |
| !! | ACAAATAATGAAGAACTAAT+TGG | - | chr3_2:54289220-54289239 | None:intergenic | 20.0% |
| !! | TATATAACAAGATGCTAAAA+TGG | - | chr3_2:54289330-54289349 | None:intergenic | 20.0% |
| !!! | AATCAACTTTTAAAACTCTT+CGG | + | chr3_2:54289438-54289457 | Msa0411770:intron | 20.0% |
| !!! | TTCTCAAATTTATTTCTGAA+TGG | + | chr3_2:54289464-54289483 | Msa0411770:intron | 20.0% |
| !!! | ACAAATTTTGCTAGATTTAT+AGG | + | chr3_2:54289855-54289874 | Msa0411770:intron | 20.0% |
| !! | AGAACAATAATAGAAGAATT+TGG | + | chr3_2:54289933-54289952 | Msa0411770:intron | 20.0% |
| !!! | TAATAGAAGAATTTGGAATT+TGG | + | chr3_2:54289940-54289959 | Msa0411770:intron | 20.0% |
| !!! | AATAGAAGAATTTGGAATTT+GGG | + | chr3_2:54289941-54289960 | Msa0411770:intron | 20.0% |
| !!! | GTTTTTTCTAAATCTTATAG+CGG | + | chr3_2:54290097-54290116 | Msa0411770:intron | 20.0% |
| !! | TAAAAATTAAAGAACTCCTT+TGG | - | chr3_2:54291532-54291551 | None:intergenic | 20.0% |
| !! | ACACTAAATGGAAAATTTAT+TGG | + | chr3_2:54291628-54291647 | Msa0411770:CDS | 20.0% |
| !!! | AGAATGTACCAAATTTTAAA+GGG | + | chr3_2:54292364-54292383 | Msa0411770:intron | 20.0% |
| !! | ATTGATAAACAAGAAAGATT+TGG | + | chr3_2:54292554-54292573 | Msa0411770:CDS | 20.0% |
| ! | AAAGAACTTCATCAATGAAT+TGG | + | chr3_2:54286413-54286432 | Msa0411770:exon | 25.0% |
| ! | AAGAATTGTGAAAAAAGGAT+TGG | - | chr3_2:54286485-54286504 | None:intergenic | 25.0% |
| ! | GTATTTATACATAGAATTGC+AGG | - | chr3_2:54286575-54286594 | None:intergenic | 25.0% |
| ! | TATGTAACTGCAGATTTAAA+AGG | + | chr3_2:54286635-54286654 | Msa0411770:intron | 25.0% |
| ! | AAAGTTCATGTCTTCAAAAA+AGG | + | chr3_2:54286854-54286873 | Msa0411770:intron | 25.0% |
| ! | AAGTTCATGTCTTCAAAAAA+GGG | + | chr3_2:54286855-54286874 | Msa0411770:intron | 25.0% |
| ! | ACTTCAAACAGATACATTAA+CGG | - | chr3_2:54286882-54286901 | None:intergenic | 25.0% |
| ! | AAAATTAGAGCCAAAAAAGA+AGG | - | chr3_2:54286983-54287002 | None:intergenic | 25.0% |
| ! | CAGTTCATAAATTTGTGAAA+TGG | + | chr3_2:54287143-54287162 | Msa0411770:intron | 25.0% |
| !!! | TGGTTCAGTTAATTTTGATA+TGG | + | chr3_2:54287163-54287182 | Msa0411770:intron | 25.0% |
| !!! | CAGTTAATTTTGATATGGTT+CGG | + | chr3_2:54287168-54287187 | Msa0411770:intron | 25.0% |
| !!! | AAAAGGTGTCTTTAACTTTA+TGG | - | chr3_2:54287361-54287380 | None:intergenic | 25.0% |
| !!! | AAGTAAGAATTTTGGCTAAA+TGG | - | chr3_2:54288004-54288023 | None:intergenic | 25.0% |
| !! | GAAGCAAAAAGTAAGAATTT+TGG | - | chr3_2:54288012-54288031 | None:intergenic | 25.0% |
| !!! | AAATTCTTACTTTTTGCTTC+AGG | + | chr3_2:54288012-54288031 | Msa0411770:intron | 25.0% |
| ! | AAATGGGAATTGAGTATTAA+GGG | + | chr3_2:54288138-54288157 | Msa0411770:intron | 25.0% |
| ! | TGAAAAGTTATAGAAAGTCT+AGG | + | chr3_2:54288336-54288355 | Msa0411770:intron | 25.0% |
| ! | GAAAAGTTATAGAAAGTCTA+GGG | + | chr3_2:54288337-54288356 | Msa0411770:intron | 25.0% |
| ! | TAGCATTCTCCTATTAAATA+TGG | - | chr3_2:54288379-54288398 | None:intergenic | 25.0% |
| ! | TCTACAAATAGAAATTGTCT+TGG | - | chr3_2:54288501-54288520 | None:intergenic | 25.0% |
| ! | AATGGAAAAAAAATTAGCGA+AGG | + | chr3_2:54288643-54288662 | Msa0411770:intron | 25.0% |
| ! | TCTTATCAGAGATAATTGTT+AGG | - | chr3_2:54288788-54288807 | None:intergenic | 25.0% |
| ! | AACAATTATCTCTGATAAGA+TGG | + | chr3_2:54288788-54288807 | Msa0411770:intron | 25.0% |
| ! | CAATCAAACATTAATGTTGA+TGG | + | chr3_2:54289088-54289107 | Msa0411770:intron | 25.0% |
| ! | GATAACATAAGTAACTATCA+AGG | + | chr3_2:54289150-54289169 | Msa0411770:intron | 25.0% |
| ! | TATAGTGACTTTACAACTAT+TGG | + | chr3_2:54289268-54289287 | Msa0411770:intron | 25.0% |
| ! | GATGCTAAAATGGTTATATA+TGG | - | chr3_2:54289320-54289339 | None:intergenic | 25.0% |
| ! | AGAAATGAGATGAAATATGT+AGG | - | chr3_2:54289407-54289426 | None:intergenic | 25.0% |
| !!! | ATCAACTTTTAAAACTCTTC+GGG | + | chr3_2:54289439-54289458 | Msa0411770:intron | 25.0% |
| ! | TGGTTCTTCTAACTTATATA+AGG | + | chr3_2:54289635-54289654 | Msa0411770:intron | 25.0% |
| ! | TCTAACTTATATAAGGATCA+AGG | + | chr3_2:54289642-54289661 | Msa0411770:intron | 25.0% |
| ! | TCCATGTTATTGTAAATTAG+AGG | + | chr3_2:54289741-54289760 | Msa0411770:intron | 25.0% |
| ! | TCCTCTAATTTACAATAACA+TGG | - | chr3_2:54289745-54289764 | None:intergenic | 25.0% |
| ! | AAACAACCAAAAAAAGTTGT+TGG | + | chr3_2:54289906-54289925 | Msa0411770:intron | 25.0% |
| !! | ATAGAAGAATTTGGAATTTG+GGG | + | chr3_2:54289942-54289961 | Msa0411770:intron | 25.0% |
| ! | ATAATAGATCCAACATAGTT+GGG | - | chr3_2:54290173-54290192 | None:intergenic | 25.0% |
| ! | AATAATAGATCCAACATAGT+TGG | - | chr3_2:54290174-54290193 | None:intergenic | 25.0% |
| ! | AACTATGTTGGATCTATTAT+TGG | + | chr3_2:54290173-54290192 | Msa0411770:intron | 25.0% |
| ! | AAACTTCATTAACAAAAGTC+TGG | - | chr3_2:54290371-54290390 | None:intergenic | 25.0% |
| ! | ACGTCAATTTAAATATGATG+TGG | - | chr3_2:54290445-54290464 | None:intergenic | 25.0% |
| ! | GATCAATACATTCTCAAATA+AGG | - | chr3_2:54290781-54290800 | None:intergenic | 25.0% |
| !!! | GCTTTACTTATGTCATTTTT+TGG | + | chr3_2:54290876-54290895 | Msa0411770:intron | 25.0% |
| !!! | TTACTTATGTCATTTTTTGG+AGG | + | chr3_2:54290879-54290898 | Msa0411770:intron | 25.0% |
| ! | AAACACGTTATTAATACCAA+TGG | + | chr3_2:54290959-54290978 | Msa0411770:intron | 25.0% |
| ! | ATAGATGTAATAATGACACT+AGG | + | chr3_2:54291019-54291038 | Msa0411770:intron | 25.0% |
| !! | TAGCGCTAGAAATTTTATTA+TGG | + | chr3_2:54291419-54291438 | Msa0411770:intron | 25.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3_2:54291652-54291671 | Msa0411770:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3_2:54291696-54291715 | Msa0411770:CDS | 25.0% |
| ! | AAAGAACTTCATCAATGAAT+CGG | + | chr3_2:54286413-54286432 | Msa0411770:exon | 25.0% |
| !! | CAGAATGTACCAAATTTTAA+AGG | + | chr3_2:54292363-54292382 | Msa0411770:intron | 25.0% |
| !!! | GAATGTACCAAATTTTAAAG+GGG | + | chr3_2:54292365-54292384 | Msa0411770:intron | 25.0% |
| !!! | TCAATAACCCCTTTAAAATT+TGG | - | chr3_2:54292375-54292394 | None:intergenic | 25.0% |
| TATACATAGAATTGCAGGAA+TGG | - | chr3_2:54286570-54286589 | None:intergenic | 30.0% | |
| !!! | AATTTTGATATGGTTCGGTT+CGG | + | chr3_2:54287173-54287192 | Msa0411770:intron | 30.0% |
| TCGTAAAACAATTGAAGACA+TGG | + | chr3_2:54288110-54288129 | Msa0411770:intron | 30.0% | |
| CGTAAAACAATTGAAGACAT+GGG | + | chr3_2:54288111-54288130 | Msa0411770:intron | 30.0% | |
| GAAATGGGAATTGAGTATTA+AGG | + | chr3_2:54288137-54288156 | Msa0411770:intron | 30.0% | |
| ATACAATATCTCGTATACCT+AGG | - | chr3_2:54288185-54288204 | None:intergenic | 30.0% | |
| ACATCCACACCATATTTAAT+AGG | + | chr3_2:54288367-54288386 | Msa0411770:intron | 30.0% | |
| TTCTCCTATTAAATATGGTG+TGG | - | chr3_2:54288374-54288393 | None:intergenic | 30.0% | |
| !! | AGAGATAATTGTTAGGTTGA+GGG | - | chr3_2:54288781-54288800 | None:intergenic | 30.0% |
| CATGTTGAAAGGATATTACA+GGG | - | chr3_2:54288983-54289002 | None:intergenic | 30.0% | |
| GAATATAACACCATGTTGAA+AGG | - | chr3_2:54288994-54289013 | None:intergenic | 30.0% | |
| GCATAATAGAAGAAACATGT+GGG | - | chr3_2:54289052-54289071 | None:intergenic | 30.0% | |
| TTTCTGAATGGACAAATGAT+TGG | + | chr3_2:54289476-54289495 | Msa0411770:intron | 30.0% | |
| ! | CAGGTACATTTGAGATTTAT+TGG | + | chr3_2:54289511-54289530 | Msa0411770:intron | 30.0% |
| !! | TTTGAAACATTGATTCGCAT+CGG | - | chr3_2:54289794-54289813 | None:intergenic | 30.0% |
| !!! | CTTTAGCCAACAACTTTTTT+TGG | - | chr3_2:54289915-54289934 | None:intergenic | 30.0% |
| TAAGATTCTTGCATGTTAGA+CGG | + | chr3_2:54290231-54290250 | Msa0411770:intron | 30.0% | |
| TTCATAATCCCGATTGTATA+TGG | + | chr3_2:54290294-54290313 | Msa0411770:intron | 30.0% | |
| TTCCTCAATCCATATACAAT+CGG | - | chr3_2:54290306-54290325 | None:intergenic | 30.0% | |
| CAATACATTCTCAAATAAGG+TGG | - | chr3_2:54290778-54290797 | None:intergenic | 30.0% | |
| AGGACTACGCAAATAAAAAA+GGG | - | chr3_2:54290820-54290839 | None:intergenic | 30.0% | |
| AAGGACTACGCAAATAAAAA+AGG | - | chr3_2:54290821-54290840 | None:intergenic | 30.0% | |
| CATATCTGTAGTATTTCCAT+TGG | - | chr3_2:54290978-54290997 | None:intergenic | 30.0% | |
| ATACTACAGATATGAAGAGT+CGG | + | chr3_2:54290984-54291003 | Msa0411770:intron | 30.0% | |
| ATATTTAAGCTAGCAAGCAA+GGG | - | chr3_2:54291111-54291130 | None:intergenic | 30.0% | |
| TATATTTAAGCTAGCAAGCA+AGG | - | chr3_2:54291112-54291131 | None:intergenic | 30.0% | |
| !! | ATGATTTTGAAGAAACGGAT+GGG | - | chr3_2:54291230-54291249 | None:intergenic | 30.0% |
| !! | GAAGGATGATTTTGAAGAAA+CGG | - | chr3_2:54291235-54291254 | None:intergenic | 30.0% |
| TCCTTCAAACTAATCTTCAT+AGG | + | chr3_2:54291249-54291268 | Msa0411770:intron | 30.0% | |
| !! | TCCTATGAAGATTAGTTTGA+AGG | - | chr3_2:54291253-54291272 | None:intergenic | 30.0% |
| TGTCTCTTTGTAAACTTTCT+TGG | - | chr3_2:54291564-54291583 | None:intergenic | 30.0% | |
| TTTACAAAGAGACATGTAGT+TGG | + | chr3_2:54291570-54291589 | Msa0411770:CDS | 30.0% | |
| ! | ATTTTCCATTTAGTGTCATC+AGG | - | chr3_2:54291624-54291643 | None:intergenic | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3_2:54291729-54291748 | Msa0411770:CDS | 30.0% |
| AAGTATGTGTACATCAAACT+TGG | - | chr3_2:54291760-54291779 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | + | chr3_2:54291759-54291778 | Msa0411770:intron | 30.0% | |
| ! | TGATGAATCAGTTGAGTTTT+TGG | + | chr3_2:54291857-54291876 | Msa0411770:CDS | 30.0% |
| TTTCTTTGCAGTATGCATAA+TGG | + | chr3_2:54291975-54291994 | Msa0411770:intron | 30.0% | |
| TTCTTTGCAGTATGCATAAT+GGG | + | chr3_2:54291976-54291995 | Msa0411770:intron | 30.0% | |
| TACTTATTTGCAAGAGAAAG+TGG | + | chr3_2:54292501-54292520 | Msa0411770:CDS | 30.0% | |
| TTACTATCTACTGTATGGTG+AGG | - | chr3_2:54286514-54286533 | None:intergenic | 35.0% | |
| AGGAGTTATTGAGAACAAAG+AGG | + | chr3_2:54286655-54286674 | Msa0411770:CDS | 35.0% | |
| AGTATGTGATTCTGCAGATT+GGG | + | chr3_2:54286678-54286697 | Msa0411770:CDS | 35.0% | |
| GAAATTGATCTGTTCTAACG+AGG | + | chr3_2:54286718-54286737 | Msa0411770:CDS | 35.0% | |
| TGTTCTAACGAGGCTAAAAA+TGG | + | chr3_2:54286728-54286747 | Msa0411770:CDS | 35.0% | |
| AAATGGTTTCTATCTATCGG+CGG | + | chr3_2:54286745-54286764 | Msa0411770:CDS | 35.0% | |
| CACTTTCCTTTCCATCAAAT+AGG | + | chr3_2:54286935-54286954 | Msa0411770:intron | 35.0% | |
| ACTTCACCTATTTGATGGAA+AGG | - | chr3_2:54286944-54286963 | None:intergenic | 35.0% | |
| !!! | GTAACCTTCACCTTCTTTTT+TGG | + | chr3_2:54286970-54286989 | Msa0411770:intron | 35.0% |
| ! | AAATTTGGAATGCACGAGTA+GGG | - | chr3_2:54287220-54287239 | None:intergenic | 35.0% |
| ! | AAAATTTGGAATGCACGAGT+AGG | - | chr3_2:54287221-54287240 | None:intergenic | 35.0% |
| AAAACAATTGAAGACATGGG+AGG | + | chr3_2:54288114-54288133 | Msa0411770:intron | 35.0% | |
| AAACAATTGAAGACATGGGA+GGG | + | chr3_2:54288115-54288134 | Msa0411770:intron | 35.0% | |
| TATAGAAGAGCAGAGAGAAA+GGG | + | chr3_2:54288207-54288226 | Msa0411770:intron | 35.0% | |
| ! | TTTCTCTCACTGGATTTTTC+TGG | - | chr3_2:54288714-54288733 | None:intergenic | 35.0% |
| AATCCAGTGAGAGAAATTCA+TGG | + | chr3_2:54288718-54288737 | Msa0411770:intron | 35.0% | |
| TGAGAGAAATTCATGGTGAA+GGG | + | chr3_2:54288725-54288744 | Msa0411770:intron | 35.0% | |
| ! | CAGAGATAATTGTTAGGTTG+AGG | - | chr3_2:54288782-54288801 | None:intergenic | 35.0% |
| CCATGTTGAAAGGATATTAC+AGG | - | chr3_2:54288984-54289003 | None:intergenic | 35.0% | |
| CCTGTAATATCCTTTCAACA+TGG | + | chr3_2:54288981-54289000 | Msa0411770:intron | 35.0% | |
| CGCATAATAGAAGAAACATG+TGG | - | chr3_2:54289053-54289072 | None:intergenic | 35.0% | |
| TCTCAAATGTACCTGAAATG+TGG | - | chr3_2:54289506-54289525 | None:intergenic | 35.0% | |
| CAATATCAGATTGTCCAAGA+GGG | + | chr3_2:54289534-54289553 | Msa0411770:intron | 35.0% | |
| ATCAAAATAGATGTCCCTCT+TGG | - | chr3_2:54289551-54289570 | None:intergenic | 35.0% | |
| ! | GAATTTGGAATTTGGGGTAT+TGG | + | chr3_2:54289948-54289967 | Msa0411770:intron | 35.0% |
| GTTGTTGTGAGAGATTATGA+AGG | + | chr3_2:54289972-54289991 | Msa0411770:intron | 35.0% | |
| !! | GAGAGATTATGAAGGTATTG+TGG | + | chr3_2:54289980-54289999 | Msa0411770:intron | 35.0% |
| ! | CTTTTCATTACCAGATTCAG+AGG | + | chr3_2:54290025-54290044 | Msa0411770:intron | 35.0% |
| ! | GGAATCAGATGTTTCTAATG+TGG | + | chr3_2:54290118-54290137 | Msa0411770:intron | 35.0% |
| ! | AGATGTTTCTAATGTGGTTC+AGG | + | chr3_2:54290124-54290143 | Msa0411770:intron | 35.0% |
| AAGATTCTTGCATGTTAGAC+GGG | + | chr3_2:54290232-54290251 | Msa0411770:intron | 35.0% | |
| TCCTCAATCCATATACAATC+GGG | - | chr3_2:54290305-54290324 | None:intergenic | 35.0% | |
| TAAATCATAAGCCAAGACTG+CGG | - | chr3_2:54290345-54290364 | None:intergenic | 35.0% | |
| CCACTCACAATAAAACCATT+AGG | - | chr3_2:54290723-54290742 | None:intergenic | 35.0% | |
| !!! | CCTAATGGTTTTATTGTGAG+TGG | + | chr3_2:54290720-54290739 | Msa0411770:intron | 35.0% |
| !!! | ATGTCATTTTTTGGAGGCAT+TGG | + | chr3_2:54290885-54290904 | Msa0411770:intron | 35.0% |
| ATGTAATAATGACACTAGGC+AGG | + | chr3_2:54291023-54291042 | Msa0411770:intron | 35.0% | |
| ACCATCATATAGTCATTGCA+GGG | + | chr3_2:54291079-54291098 | Msa0411770:intron | 35.0% | |
| ATATAGTCATTGCAGGGTAA+TGG | + | chr3_2:54291085-54291104 | Msa0411770:intron | 35.0% | |
| !! | GATGATTTTGAAGAAACGGA+TGG | - | chr3_2:54291231-54291250 | None:intergenic | 35.0% |
| ! | ACCTTTTTCTTAGTGACCAA+AGG | + | chr3_2:54291513-54291532 | Msa0411770:intron | 35.0% |
| TCCTTTGGTCACTAAGAAAA+AGG | - | chr3_2:54291517-54291536 | None:intergenic | 35.0% | |
| !! | ATGGTGAGATTTGGTTTGAA+AGG | + | chr3_2:54291661-54291680 | Msa0411770:CDS | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+GGG | + | chr3_2:54291662-54291681 | Msa0411770:CDS | 35.0% |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3_2:54291702-54291721 | Msa0411770:CDS | 35.0% | |
| !! | AATCTATTTCTACCGCATTC+TGG | - | chr3_2:54291785-54291804 | None:intergenic | 35.0% |
| !! | CAGTTGAGTTTTTGGATGAA+TGG | + | chr3_2:54291865-54291884 | Msa0411770:CDS | 35.0% |
| ! | TTTTGGATGAATGGCTGAAT+CGG | + | chr3_2:54291874-54291893 | Msa0411770:CDS | 35.0% |
| AAACCTCTAACTTTCTTGTG+TGG | - | chr3_2:54291939-54291958 | None:intergenic | 35.0% | |
| ACACAAGAAAGTTAGAGGTT+TGG | + | chr3_2:54291938-54291957 | Msa0411770:intron | 35.0% | |
| ! | AGAAAGTTAGAGGTTTGGTT+TGG | + | chr3_2:54291943-54291962 | Msa0411770:intron | 35.0% |
| TGTGTGCAATGTAAAACTCT+TGG | - | chr3_2:54292056-54292075 | None:intergenic | 35.0% | |
| TACATTGCACACATATATGC+AGG | + | chr3_2:54292063-54292082 | Msa0411770:intron | 35.0% | |
| TGTATGAGAACTGTGAAGAA+AGG | - | chr3_2:54292183-54292202 | None:intergenic | 35.0% | |
| !! | TGATTTGCTTCCAGATGATT+GGG | - | chr3_2:54292207-54292226 | None:intergenic | 35.0% |
| !! | TTGATTTGCTTCCAGATGAT+TGG | - | chr3_2:54292208-54292227 | None:intergenic | 35.0% |
| TAAAGGGGTTATTGAGAACA+AGG | + | chr3_2:54292380-54292399 | Msa0411770:CDS | 35.0% | |
| CGTTCTTATGAGAGCAAAAA+TGG | + | chr3_2:54292456-54292475 | Msa0411770:CDS | 35.0% | |
| CCAGCTTACTATCTACTGTA+TGG | - | chr3_2:54286519-54286538 | None:intergenic | 40.0% | |
| CCATACAGTAGATAGTAAGC+TGG | + | chr3_2:54286516-54286535 | Msa0411770:intron | 40.0% | |
| GAGTATGTGATTCTGCAGAT+TGG | + | chr3_2:54286677-54286696 | Msa0411770:CDS | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | + | chr3_2:54286690-54286709 | Msa0411770:CDS | 40.0% | |
| AATGGTTTCTATCTATCGGC+GGG | + | chr3_2:54286746-54286765 | Msa0411770:CDS | 40.0% | |
| TTCACTTTCGCTTGCAAACA+AGG | - | chr3_2:54286777-54286796 | None:intergenic | 40.0% | |
| TCAAAGACACAAACATCTCC+TGG | - | chr3_2:54286806-54286825 | None:intergenic | 40.0% | |
| GCTTCACTTCACCTATTTGA+TGG | - | chr3_2:54286949-54286968 | None:intergenic | 40.0% | |
| AGAGCCAAAAAAGAAGGTGA+AGG | - | chr3_2:54286977-54286996 | None:intergenic | 40.0% | |
| GTATAGAAGAGCAGAGAGAA+AGG | + | chr3_2:54288206-54288225 | Msa0411770:intron | 40.0% | |
| CAGAGAGAAAGGGATAAAGA+GGG | + | chr3_2:54288217-54288236 | Msa0411770:intron | 40.0% | |
| AATGCTAACTAGTGCACCAA+GGG | + | chr3_2:54288392-54288411 | Msa0411770:intron | 40.0% | |
| AGATGTTTAACCATTGCCCT+TGG | - | chr3_2:54288411-54288430 | None:intergenic | 40.0% | |
| !! | CTCACTGGATTTTTCTGGTA+TGG | - | chr3_2:54288709-54288728 | None:intergenic | 40.0% |
| TCACCATGAATTTCTCTCAC+TGG | - | chr3_2:54288724-54288743 | None:intergenic | 40.0% | |
| GTGAGAGAAATTCATGGTGA+AGG | + | chr3_2:54288724-54288743 | Msa0411770:intron | 40.0% | |
| !! | TGATTGGTCTACCACATTTC+AGG | + | chr3_2:54289492-54289511 | Msa0411770:intron | 40.0% |
| GCAATATCAGATTGTCCAAG+AGG | + | chr3_2:54289533-54289552 | Msa0411770:intron | 40.0% | |
| ! | TAGCAGAAGCTTTAGCTATG+CGG | + | chr3_2:54290048-54290067 | Msa0411770:intron | 40.0% |
| CAACAACATCCCAACTATGT+TGG | + | chr3_2:54290161-54290180 | Msa0411770:intron | 40.0% | |
| ! | TCCCGATTGTATATGGATTG+AGG | + | chr3_2:54290301-54290320 | Msa0411770:intron | 40.0% |
| TTGAAATGGCCTCGTTGTTA+TGG | + | chr3_2:54290697-54290716 | Msa0411770:intron | 40.0% | |
| !!! | ATTTTTTGGAGGCATTGGAG+AGG | + | chr3_2:54290890-54290909 | Msa0411770:intron | 40.0% |
| TAGGCAGGTAGCTTAATATG+AGG | + | chr3_2:54291038-54291057 | Msa0411770:intron | 40.0% | |
| CTGCAATGACTATATGATGG+TGG | - | chr3_2:54291080-54291099 | None:intergenic | 40.0% | |
| CACCATCATATAGTCATTGC+AGG | + | chr3_2:54291078-54291097 | Msa0411770:intron | 40.0% | |
| ACCCTGCAATGACTATATGA+TGG | - | chr3_2:54291083-54291102 | None:intergenic | 40.0% | |
| ! | ATGGATGAAAGAGTGTGAAG+TGG | - | chr3_2:54291185-54291204 | None:intergenic | 40.0% |
| ACTTCACACTCTTTCATCCA+TGG | + | chr3_2:54291184-54291203 | Msa0411770:intron | 40.0% | |
| CATAGAATTTCCTCTAGCCA+TGG | - | chr3_2:54291204-54291223 | None:intergenic | 40.0% | |
| ! | AGTTGGTCTATCAAATCCAG+TGG | + | chr3_2:54291587-54291606 | Msa0411770:CDS | 40.0% |
| AGACTCCTGATGACACTAAA+TGG | + | chr3_2:54291616-54291635 | Msa0411770:CDS | 40.0% | |
| !! | GGTGAGATTTGGTTTGAAAG+GGG | + | chr3_2:54291663-54291682 | Msa0411770:CDS | 40.0% |
| !! | AGATTTGGTTTGAAAGGGGT+TGG | + | chr3_2:54291667-54291686 | Msa0411770:CDS | 40.0% |
| TTCATCAATGAATCGGCCAA+AGG | + | chr3_2:54292113-54292132 | Msa0411770:CDS | 40.0% | |
| TGTGAAGAAAGGATTGCATG+AGG | - | chr3_2:54292172-54292191 | None:intergenic | 40.0% | |
| TCATCTGGAAGCAAATCAAC+TGG | + | chr3_2:54292209-54292228 | Msa0411770:CDS | 40.0% | |
| AAGAATGTGATGCTGCTGAT+TGG | + | chr3_2:54292405-54292424 | Msa0411770:CDS | 40.0% | |
| ! | AGAATGTGATGCTGCTGATT+GGG | + | chr3_2:54292406-54292425 | Msa0411770:CDS | 40.0% |
| ! | TGCTGATTGGGAAAAGATCA+TGG | + | chr3_2:54292418-54292437 | Msa0411770:CDS | 40.0% |
| !! | AGAGAAAGTGGACTGAAATC+AGG | + | chr3_2:54292513-54292532 | Msa0411770:CDS | 40.0% |
| !! | TCCTGAGCTCTAGCATCTTT+TGG | - | chr3_2:54286439-54286458 | None:intergenic | 45.0% |
| ACACGTGCATCATGAGTCTA+TGG | + | chr3_2:54287043-54287062 | Msa0411770:intron | 45.0% | |
| TTGAAGACATGGGAGGGAAA+TGG | + | chr3_2:54288121-54288140 | Msa0411770:intron | 45.0% | |
| TGAAGACATGGGAGGGAAAT+GGG | + | chr3_2:54288122-54288141 | Msa0411770:intron | 45.0% | |
| GCAGAGAGAAAGGGATAAAG+AGG | + | chr3_2:54288216-54288235 | Msa0411770:intron | 45.0% | |
| GAATGCTAACTAGTGCACCA+AGG | + | chr3_2:54288391-54288410 | Msa0411770:intron | 45.0% | |
| !!! | GTGGGTCGTTTTTCAGAAGA+AGG | - | chr3_2:54289034-54289053 | None:intergenic | 45.0% |
| ! | AGAAGCTTTAGCTATGCGGA+AGG | + | chr3_2:54290052-54290071 | Msa0411770:intron | 45.0% |
| ! | GAAGCTTTAGCTATGCGGAA+GGG | + | chr3_2:54290053-54290072 | Msa0411770:intron | 45.0% |
| ! | AAGCTTTAGCTATGCGGAAG+GGG | + | chr3_2:54290054-54290073 | Msa0411770:intron | 45.0% |
| ATTCTTGCATGTTAGACGGG+AGG | + | chr3_2:54290235-54290254 | Msa0411770:intron | 45.0% | |
| GAGCTAGATAATGAGCAGCT+TGG | - | chr3_2:54290265-54290284 | None:intergenic | 45.0% | |
| AGACTGCGGAAATACAAGGT+GGG | - | chr3_2:54290331-54290350 | None:intergenic | 45.0% | |
| AAGACTGCGGAAATACAAGG+TGG | - | chr3_2:54290332-54290351 | None:intergenic | 45.0% | |
| ACCTTGTATTTCCGCAGTCT+TGG | + | chr3_2:54290331-54290350 | Msa0411770:intron | 45.0% | |
| ACCATTAGGCCATAACAACG+AGG | - | chr3_2:54290709-54290728 | None:intergenic | 45.0% | |
| GAAGTCCATTGATCGAATCG+CGG | - | chr3_2:54290749-54290768 | None:intergenic | 45.0% | |
| ACTCTTTCATCCATGGCTAG+AGG | + | chr3_2:54291191-54291210 | Msa0411770:intron | 45.0% | |
| TCAGGAGTCTTTATCACCAC+TGG | - | chr3_2:54291606-54291625 | None:intergenic | 45.0% | |
| ACACATACTTGGCCAGAATG+CGG | + | chr3_2:54291770-54291789 | Msa0411770:intron | 45.0% | |
| TGAATGGCTGAATCGGAAGA+AGG | + | chr3_2:54291881-54291900 | Msa0411770:CDS | 45.0% | |
| TGTGGTCGAGGAGAAACAAA+AGG | - | chr3_2:54291921-54291940 | None:intergenic | 45.0% | |
| CTAACTTTCTTGTGTGGTCG+AGG | - | chr3_2:54291933-54291952 | None:intergenic | 45.0% | |
| CGACCACACAAGAAAGTTAG+AGG | + | chr3_2:54291933-54291952 | Msa0411770:CDS | 45.0% | |
| ! | TCCTGAGCTCTAACATCCTT+TGG | - | chr3_2:54292132-54292151 | None:intergenic | 45.0% |
| TCTCATACAGCCCAATCATC+TGG | + | chr3_2:54292194-54292213 | Msa0411770:CDS | 45.0% | |
| CTGGAAGCAAATCAACTGGT+AGG | + | chr3_2:54292213-54292232 | Msa0411770:intron | 45.0% | |
| AGCAAATCAACTGGTAGGAG+AGG | + | chr3_2:54292218-54292237 | Msa0411770:intron | 45.0% | |
| !!! | TTTTTTTTTTTACAAAAAAA+AGG | - | chr3_2:54287378-54287397 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTACAAAAAAA+AGG | - | chr3_2:54287378-54287397 | None:intergenic | 5.0% |
| !! | TATGAATAATATTAAATTTA+GGG | - | chr3_2:54288562-54288581 | None:intergenic | 5.0% |
| !!! | TTAGTATAATATAATTTTTT+CGG | + | chr3_2:54290574-54290593 | Msa0411770:intron | 5.0% |
| !! | ATAATATAATATAATATAGA+TGG | + | chr3_2:54290605-54290624 | Msa0411770:intron | 5.0% |
| !!! | AAATACTATTTTTTATTATA+AGG | - | chr3_2:54290840-54290859 | None:intergenic | 5.0% |
| GCCAAAAGATGCTAGAGCTC+AGG | + | chr3_2:54286435-54286454 | Msa0411770:CDS | 50.0% | |
| GTTTCTATCTATCGGCGGGT+TGG | + | chr3_2:54286750-54286769 | Msa0411770:CDS | 50.0% | |
| AGCGAAAGTGAACTGCAACC+AGG | + | chr3_2:54286785-54286804 | Msa0411770:CDS | 50.0% | |
| !! | TATGGTTCGGTTCGGTGAAC+CGG | + | chr3_2:54287181-54287200 | Msa0411770:intron | 50.0% |
| GTAGGGCTGGGCAAAATTAC+CGG | - | chr3_2:54287203-54287222 | None:intergenic | 50.0% | |
| AACTAGTGCACCAAGGGCAA+TGG | + | chr3_2:54288398-54288417 | Msa0411770:intron | 50.0% | |
| TGCACTCAGGACAGTGGTTA+AGG | - | chr3_2:54288526-54288545 | None:intergenic | 50.0% | |
| ! | ACTTGCTAACCAGTGCACTC+AGG | - | chr3_2:54288539-54288558 | None:intergenic | 50.0% |
| GCTTCTGCTACCTCTGAATC+TGG | - | chr3_2:54290038-54290057 | None:intergenic | 50.0% | |
| GACTGCGGAAATACAAGGTG+GGG | - | chr3_2:54290330-54290349 | None:intergenic | 50.0% | |
| GCCAAGACTGCGGAAATACA+AGG | - | chr3_2:54290335-54290354 | None:intergenic | 50.0% | |
| GCCTCGTTGTTATGGCCTAA+TGG | + | chr3_2:54290705-54290724 | Msa0411770:intron | 50.0% | |
| GCCAAAGGATGTTAGAGCTC+AGG | + | chr3_2:54292128-54292147 | Msa0411770:CDS | 50.0% | |
| TGCAAATAAGTACCAGCCCG+CGG | - | chr3_2:54292493-54292512 | None:intergenic | 50.0% | |
| GAATGCACGACTCGTGCGTA+GGG | - | chr3_2:54287095-54287114 | None:intergenic | 55.0% | |
| TGGAATGCACGAGTAGGGCT+GGG | - | chr3_2:54287215-54287234 | None:intergenic | 55.0% | |
| TTGGAATGCACGAGTAGGGC+TGG | - | chr3_2:54287216-54287235 | None:intergenic | 55.0% | |
| AACCACTGTCCTGAGTGCAC+TGG | + | chr3_2:54288527-54288546 | Msa0411770:intron | 55.0% | |
| AACCAGTGCACTCAGGACAG+TGG | - | chr3_2:54288532-54288551 | None:intergenic | 55.0% | |
| GGTCACCGCGATTCGATCAA+TGG | + | chr3_2:54290741-54290760 | Msa0411770:intron | 55.0% | |
| !! | GGAGGCATTGGAGAGGATCT+TGG | + | chr3_2:54290897-54290916 | Msa0411770:intron | 55.0% |
| CTCTCTTGGACATGGCTGCT+TGG | + | chr3_2:54291710-54291729 | Msa0411770:CDS | 55.0% | |
| TCTTGGACATGGCTGCTTGG+TGG | + | chr3_2:54291713-54291732 | Msa0411770:CDS | 55.0% | |
| ATAAGTACCAGCCCGCGGAA+AGG | - | chr3_2:54292488-54292507 | None:intergenic | 55.0% | |
| GGTCCATCATGACTCGTGCC+CGG | + | chr3_2:54287064-54287083 | Msa0411770:intron | 60.0% | |
| GGAATGCACGACTCGTGCGT+AGG | - | chr3_2:54287096-54287115 | None:intergenic | 60.0% | |
| AAATGGCCGTCGCCTTTCCG+CGG | + | chr3_2:54292473-54292492 | Msa0411770:CDS | 60.0% | |
| CACGACTCGTGCGTAGGGCT+GGG | - | chr3_2:54287090-54287109 | None:intergenic | 65.0% | |
| AATGGCCGTCGCCTTTCCGC+GGG | + | chr3_2:54292474-54292493 | Msa0411770:CDS | 65.0% | |
| GGGCCGGGCACGAGTCATGA+TGG | - | chr3_2:54287070-54287089 | None:intergenic | 70.0% | |
| ACTCGTGCGTAGGGCTGGGC+CGG | - | chr3_2:54287086-54287105 | None:intergenic | 70.0% | |
| GCACGACTCGTGCGTAGGGC+TGG | - | chr3_2:54287091-54287110 | None:intergenic | 70.0% | |
| ACCAGCCCGCGGAAAGGCGA+CGG | - | chr3_2:54292482-54292501 | None:intergenic | 70.0% | |
| CTCGTGCGTAGGGCTGGGCC+GGG | - | chr3_2:54287085-54287104 | None:intergenic | 75.0% | |
| ! | GCCGTCGCCTTTCCGCGGGC+TGG | + | chr3_2:54292478-54292497 | Msa0411770:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 54286392 | 54292596 | 54286392 | ID=Msa0411770;Name=Msa0411770 |
| chr3_2 | mRNA | 54286392 | 54292596 | 54286392 | ID=Msa0411770-mRNA-1;Parent=Msa0411770;Name=Msa0411770-mRNA-1;_AED=0.12;_eAED=0.14;_QI=35|0|0|1|0.6|0.33|6|0|357 |
| chr3_2 | exon | 54286392 | 54286529 | 54286392 | ID=Msa0411770-mRNA-1:exon:11010;Parent=Msa0411770-mRNA-1 |
| chr3_2 | exon | 54286648 | 54286856 | 54286648 | ID=Msa0411770-mRNA-1:exon:11011;Parent=Msa0411770-mRNA-1 |
| chr3_2 | exon | 54291555 | 54291767 | 54291555 | ID=Msa0411770-mRNA-1:exon:11012;Parent=Msa0411770-mRNA-1 |
| chr3_2 | exon | 54291786 | 54291954 | 54291786 | ID=Msa0411770-mRNA-1:exon:11013;Parent=Msa0411770-mRNA-1 |
| chr3_2 | exon | 54292085 | 54292230 | 54292085 | ID=Msa0411770-mRNA-1:exon:11014;Parent=Msa0411770-mRNA-1 |
| chr3_2 | exon | 54292366 | 54292596 | 54292366 | ID=Msa0411770-mRNA-1:exon:11015;Parent=Msa0411770-mRNA-1 |
| chr3_2 | five_prime_UTR | 54286392 | 54286426 | 54286392 | ID=Msa0411770-mRNA-1:five_prime_utr;Parent=Msa0411770-mRNA-1 |
| chr3_2 | CDS | 54286427 | 54286529 | 54286427 | ID=Msa0411770-mRNA-1:cds;Parent=Msa0411770-mRNA-1 |
| chr3_2 | CDS | 54286648 | 54286856 | 54286648 | ID=Msa0411770-mRNA-1:cds;Parent=Msa0411770-mRNA-1 |
| chr3_2 | CDS | 54291555 | 54291767 | 54291555 | ID=Msa0411770-mRNA-1:cds;Parent=Msa0411770-mRNA-1 |
| chr3_2 | CDS | 54291786 | 54291954 | 54291786 | ID=Msa0411770-mRNA-1:cds;Parent=Msa0411770-mRNA-1 |
| chr3_2 | CDS | 54292085 | 54292230 | 54292085 | ID=Msa0411770-mRNA-1:cds;Parent=Msa0411770-mRNA-1 |
| chr3_2 | CDS | 54292366 | 54292596 | 54292366 | ID=Msa0411770-mRNA-1:cds;Parent=Msa0411770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
