AlfalfaGEDB | Msa0412750

M. sativa cultivar zhongmu-4 / Msa0412750

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412750	XP_013460199.1	93.363	452	22	3	1	445	1	451	0.0	843

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412750	sp\|Q9FY60\|MYB64_ARATH	39.294	453	186	13	23	442	16	412	1.24e-81	261

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412750	A0A072V7R5	93.363	452	22	3	1	445	1	451	0.0	843

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TFs/TRs:

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Gene ID	Type	Classification
Msa0412750	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412750	MtrunA17_Chr3g0104491	91.078	269	17	2	184	445	17	285	1.44e-168	474
Msa0412750	MtrunA17_Chr3g0104501	95.676	185	7	1	1	185	1	184	4.25e-129	371
Msa0412750	MtrunA17_Chr5g0429661	48.293	410	141	15	5	409	11	354	1.34e-108	325
Msa0412750	MtrunA17_Chr3g0117511	45.455	242	98	6	28	262	92	306	1.28e-59	201
Msa0412750	MtrunA17_Chr4g0058991	65.649	131	40	1	132	262	207	332	2.24e-57	196
Msa0412750	MtrunA17_Chr7g0228531	56.204	137	54	3	130	266	216	346	3.77e-49	173
Msa0412750	MtrunA17_Chr7g0228481	52.555	137	59	3	130	266	216	346	1.51e-43	158
Msa0412750	MtrunA17_Chr7g0238631	60.714	112	44	0	123	234	102	213	7.39e-41	153
Msa0412750	MtrunA17_Chr1g0177901	53.279	122	53	1	145	266	5	122	8.38e-41	144
Msa0412750	MtrunA17_Chr7g0228401	32.394	284	139	5	17	266	143	407	1.25e-40	151

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412750	AT5G11050.1	39.294	453	186	13	23	442	16	412	1.26e-82	261
Msa0412750	AT5G58850.1	37.885	454	203	13	23	442	11	419	1.29e-76	245
Msa0412750	AT4G18770.1	66.667	138	41	1	125	262	208	340	6.52e-60	202
Msa0412750	AT3G27785.1	60.135	148	46	2	122	263	177	317	1.65e-54	188
Msa0412750	AT5G40360.1	54.615	130	56	1	134	263	158	284	1.62e-47	167
Msa0412750	AT3G09370.1	47.368	171	79	3	125	290	121	285	7.29e-41	152
Msa0412750	AT3G09370.2	47.368	171	79	3	125	290	126	290	7.46e-41	152
Msa0412750	AT3G09370.3	47.399	173	80	3	123	290	132	298	7.63e-41	152
Msa0412750	AT5G02320.1	60.909	110	43	0	125	234	118	227	1.07e-40	153
Msa0412750	AT5G02320.2	60.909	110	43	0	125	234	118	227	1.07e-40	153

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Find 100 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCCTCAAACCACTGA+TGG	0.628725	3_2:-56420092	Msa0412750:CDS
AAACCAATTGGAGTACGTAT+TGG	0.519717	3_2:-56422703	Msa0412750:CDS
AAAGATGGCATAATCATCTG+AGG	0.662817	3_2:-56421643	Msa0412750:CDS
AACAATGTGGAGTTGCATCT+TGG	0.428463	3_2:-56419570	Msa0412750:CDS
AAGAGCTGGAAAGCAGTGTA+GGG	0.544280	3_2:-56421666	Msa0412750:CDS
AAGAGGGTTTCTTGGAGTAG+GGG	0.530916	3_2:+56419799	None:intergenic
AAGGAAGATTGGTTTGAAGA+AGG	0.458004	3_2:+56419942	None:intergenic
AAGGAGGACCAATAGAAGAG+TGG	0.673968	3_2:+56422653	None:intergenic
AAGGTAATTCATCATAGGTG+TGG	0.625090	3_2:+56419641	None:intergenic
AAGTGACATACTTTGATATC+AGG	0.394233	3_2:+56421620	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCCATTGATAGATTCTTAT+GGG	-	chr3_2:56419577-56419596	Msa0412750:CDS	30.0%
ATTAGGCCACATAAAACTAT+AGG	+	chr3_2:56419690-56419709	None:intergenic	30.0%
GAAAAAGAAGACACTTTCTT+AGG	+	chr3_2:56419869-56419888	None:intergenic	30.0%
CAAACACTCAAACAACAATT+AGG	+	chr3_2:56419943-56419962	None:intergenic	30.0%
AGCAATATGGTGTAAGAAAA+TGG	-	chr3_2:56420488-56420507	Msa0412750:intron	30.0%
AAGTGACATACTTTGATATC+AGG	+	chr3_2:56420586-56420605	None:intergenic	30.0%
TCTATATCTTATGAACTTGC+AGG	-	chr3_2:56420872-56420891	Msa0412750:intron	30.0%
ATTAATCCAAACGTGGATTT+AGG	+	chr3_2:56420998-56421017	None:intergenic	30.0%
TAAGACAATTAATCCAAACG+TGG	+	chr3_2:56421005-56421024	None:intergenic	30.0%
TATCCTACTTATGAGAAAAG+TGG	+	chr3_2:56421061-56421080	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	56419497	56422728	56419497	ID=Msa0412750;Name=Msa0412750
chr3_2	mRNA	56419497	56422728	56419497	ID=Msa0412750-mRNA-1;Parent=Msa0412750;Name=Msa0412750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|3\|0\|445
chr3_2	exon	56422301	56422728	56422301	ID=Msa0412750-mRNA-1:exon:11511;Parent=Msa0412750-mRNA-1
chr3_2	exon	56421631	56421757	56421631	ID=Msa0412750-mRNA-1:exon:11510;Parent=Msa0412750-mRNA-1
chr3_2	exon	56419497	56420279	56419497	ID=Msa0412750-mRNA-1:exon:11509;Parent=Msa0412750-mRNA-1
chr3_2	CDS	56422301	56422728	56422301	ID=Msa0412750-mRNA-1:cds;Parent=Msa0412750-mRNA-1
chr3_2	CDS	56421631	56421757	56421631	ID=Msa0412750-mRNA-1:cds;Parent=Msa0412750-mRNA-1
chr3_2	CDS	56419497	56420279	56419497	ID=Msa0412750-mRNA-1:cds;Parent=Msa0412750-mRNA-1

Gene Sequence

>Msa0412750

ATGAAACCAATTGGAGTACGTATTGGTGGTGGTGATAATTTAAAGATCACCAACCACTCTTCTATTGGTCCTCCTTTGACTGCCATTGATAGATTCTTATGGGGTCAACACAACCACTTCCCTCAAAAGAAACTTCAACAAAATGTTGATGATCAAAATATTTATAGCTTTGGTTGTTCGAATGCTTCAACCTATAGTTTTATGTGGCCTAATAATAATAATATGATGTCTCAAGAAGCTAGCTTTGTTGATCAGCTATTGGCAAATGAAGAGGTGATGAATTGGACACAACAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGCGATCAATGGTTTAGGAAAGGGTGCAAAAGTGGTTGGAAGAAGACCTAAGAAAGTGTCTTCTTTTTCCTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAATTGCTGAAGTTGGTGAAGCAATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTAGGGAAAGATGGCATAATCATCTGAGGCCTGATATCAAAAAAGATAGTTGGAGTGAAGAAGAAGAAAGGATGCTAGTAGAAACTCATGGCATGATTGGAAACCGTTGGGCAGAGATAGCAAAGAGAATTCCAGGAAGAACTGAGAATGCAATAAAGAATCATTGGAATGCAACAAAAAGGAGACAAAATTCAAGGAGAAAGAACAAAAGGCCTCAAACCACTGATGGTAAACCACAATCTTCTATTCTTCAAGACTACATCAAAACTTTGACTACTCAAAAAGCATCCACCGGTACTACTGCTACTACTACTGCTGCTGCTACTACTAGCTCCGTGTCAGCGATCTCTGAGGACCCTTCTTCAAACCAATCTTCCTTTGTTTTTTCTAACGTATCCCATGAAAATTCATCATCACCACTTATATCTGAATCTTATGATGATGAACTCCTCTTCATGCAACAACTTTTCAAGGTGAATAATAACGCCGAACCTGTTAACCCCTACTCCAAGAAACCCTCTTCAAACCCTTACTATTCTTCCCAAACTAACAGTAATCAGATTCTCCCTGATGTTACTGATTTTGGATTTGTTCATTCCAATCCTTCCAATTACCCTAAACCAAATTCACAAAACAACATGTACTTGAGTACTTCTTCCACACCTATGATGAATTACCTTAATTCTGATCACTACCTTCCTCCAATGCTGAATGGAATTCAGAATCAGAACAATGTGGAGTTGCATCTTGGGAATATGAATTTCTCAGAGGGGAAGAGAGAGATGGATTTGTTGGAGTTGGTTTCTTCTGCTCAGTTTTATTAG

Protein sequence

>Msa0412750

MKPIGVRIGGGDNLKITNHSSIGPPLTAIDRFLWGQHNHFPQKKLQQNVDDQNIYSFGCSNASTYSFMWPNNNNMMSQEASFVDQLLANEEVMNWTQQIPSLCVEKEDAINGLGKGAKVVGRRPKKVSSFSLIKGQWTDEEDRKLLKLVKQYGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERMLVETHGMIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSRRKNKRPQTTDGKPQSSILQDYIKTLTTQKASTGTTATTTAAATTSSVSAISEDPSSNQSSFVFSNVSHENSSSPLISESYDDELLFMQQLFKVNNNAEPVNPYSKKPSSNPYYSSQTNSNQILPDVTDFGFVHSNPSNYPKPNSQNNMYLSTSSTPMMNYLNSDHYLPPMLNGIQNQNNVELHLGNMNFSEGKREMDLLELVSSAQFY*