AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0412990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412990 MtrunA17_Chr1g0187591 63.927 657 149 11 1 573 1 653 0.0 723
Msa0412990 MtrunA17_Chr1g0187591 39.259 540 159 13 587 1002 154 648 9.82e-87 292
Msa0412990 MtrunA17_Chr3g0105131 60.145 552 167 7 1 545 1 506 0.0 577
Msa0412990 MtrunA17_Chr3g0105131 44.041 386 131 10 620 979 179 505 2.53e-71 246
Msa0412990 MtrunA17_Chr3g0105121 70.380 395 66 6 613 995 1 356 1.48e-178 523
Msa0412990 MtrunA17_Chr3g0105121 52.500 280 97 7 296 562 100 356 3.22e-66 226
Msa0412990 MtrunA17_Chr3g0105101 68.916 415 77 8 37 441 29 401 8.81e-172 507
Msa0412990 MtrunA17_Chr3g0105101 50.638 235 87 6 651 885 196 401 1.98e-58 206
Msa0412990 MtrunA17_Chr5g0430211 40.414 725 289 27 1 603 1 704 2.48e-119 381
Msa0412990 MtrunA17_Chr5g0430211 40.556 360 153 12 620 928 229 578 2.53e-59 216
Msa0412990 MtrunA17_Chr5g0437251 35.994 689 294 24 28 601 25 681 6.59e-93 310
Msa0412990 MtrunA17_Chr5g0437251 36.049 405 175 14 620 964 216 596 3.38e-52 195
Msa0412990 MtrunA17_Chr3g0105151 56.846 241 82 7 363 587 1 235 3.99e-71 236
Msa0412990 MtrunA17_Chr3g0105151 59.009 222 70 2 802 1002 1 222 1.28e-70 234
Msa0412990 MtrunA17_Chr3g0105111 79.508 122 12 1 480 601 1 109 1.01e-59 199
Msa0412990 MtrunA17_Chr3g0105111 56.757 74 25 3 934 1002 5 76 5.21e-13 66.6
Msa0412990 MtrunA17_Chr3g0113651 32.574 571 257 22 31 565 8 486 1.77e-55 201
Msa0412990 MtrunA17_Chr3g0113651 35.574 357 135 16 620 958 162 441 8.33e-44 167
Msa0412990 MtrunA17_Chr7g0257831 34.298 484 226 18 30 431 44 517 9.97e-52 194
Msa0412990 MtrunA17_Chr7g0257831 38.351 279 125 8 620 875 263 517 3.99e-47 181
Msa0412990 MtrunA17_Chr3g0105141 70.909 110 28 2 620 726 35 143 4.43e-51 177
Msa0412990 MtrunA17_Chr3g0088521 34.366 355 173 11 620 937 263 594 1.12e-46 179
Msa0412990 MtrunA17_Chr3g0088521 29.412 680 306 28 30 569 42 687 3.60e-44 172
Msa0412990 MtrunA17_Chr3g0092221 46.853 143 67 3 620 754 157 298 5.83e-38 147
Msa0412990 MtrunA17_Chr3g0135351 52.273 132 60 2 620 748 52 183 1.07e-37 142
Msa0412990 MtrunA17_Chr8g0389561 51.587 126 58 2 619 742 79 203 1.72e-37 145
Msa0412990 MtrunA17_Chr3g0092171 51.064 141 56 4 620 748 274 413 3.02e-36 144
Msa0412990 MtrunA17_Chr3g0092171 30.933 375 200 11 30 367 80 432 1.90e-27 117
Msa0412990 MtrunA17_Chr1g0171151 35.531 273 130 10 620 874 243 487 3.22e-35 142
Msa0412990 MtrunA17_Chr1g0171151 28.387 465 260 15 32 430 30 487 2.85e-31 130
Msa0412990 MtrunA17_Chr6g0487481 55.238 105 44 2 620 722 102 205 1.10e-34 137
Msa0412990 MtrunA17_Chr2g0324781 50.893 112 52 2 621 730 77 187 1.54e-31 128
Msa0412990 MtrunA17_Chr4g0040391 49.524 105 50 2 620 722 59 162 1.59e-29 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412990 AT2G40140.2 34.109 645 328 25 1 600 1 593 4.97e-81 275
Msa0412990 AT2G40140.2 34.422 398 192 15 620 1000 213 558 3.74e-47 179
Msa0412990 AT2G40140.1 34.109 645 328 25 1 600 1 593 4.97e-81 275
Msa0412990 AT2G40140.1 34.422 398 192 15 620 1000 213 558 3.74e-47 179
Msa0412990 AT5G58620.1 36.184 608 299 24 21 564 2 584 6.17e-80 273
Msa0412990 AT5G58620.1 37.604 359 177 17 620 962 208 535 6.20e-49 184
Msa0412990 AT3G55980.1 34.127 630 332 21 1 600 1 577 2.15e-78 268
Msa0412990 AT3G55980.1 36.056 355 156 16 620 964 210 503 3.01e-44 170
Msa0412990 AT3G55980.2 34.127 630 332 21 1 600 68 644 5.70e-78 268
Msa0412990 AT3G55980.2 36.056 355 156 16 620 964 277 570 8.47e-44 170
Msa0412990 AT5G12850.1 30.781 640 308 26 25 546 34 656 4.43e-51 192
Msa0412990 AT5G12850.1 40.075 267 130 9 620 875 256 503 3.02e-44 172
Msa0412990 AT2G41900.1 40.856 257 117 6 620 868 260 489 2.15e-48 185
Msa0412990 AT2G41900.1 32.770 473 226 17 25 426 40 491 6.78e-47 180
Msa0412990 AT2G25900.2 49.606 127 61 2 620 744 89 214 9.32e-36 139
Msa0412990 AT2G25900.1 49.606 127 61 2 620 744 89 214 9.32e-36 139
Msa0412990 AT4G29190.1 44.595 148 79 2 620 765 78 224 1.01e-35 139
Msa0412990 AT1G03790.1 51.667 120 53 2 620 734 81 200 4.06e-34 136
Msa0412990 AT5G44260.1 53.636 110 49 1 620 727 59 168 4.52e-34 135
Msa0412990 AT5G07500.1 52.381 105 47 2 620 722 51 154 5.05e-34 131
Msa0412990 AT2G19810.1 52.336 107 48 2 620 724 77 182 3.48e-33 132

Find 248 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAACCTTGAAGGCTATTT+TGG 0.071306 3_2:+57110866 Msa0412990:CDS
ATTGAAAACCTACTTGTTTA+AGG 0.075570 3_2:-57107083 None:intergenic
CTCATGGTTGCTGCCTTATT+TGG 0.187868 3_2:+57106769 Msa0412990:CDS
CTTACCAATTCAAATGTTAT+TGG 0.199131 3_2:+57107945 Msa0412990:CDS
TTGTCAAACTGGTTTGATTA+AGG 0.208098 3_2:+57106558 Msa0412990:CDS
ATCATCTACGCCTTCTAGTA+TGG 0.227210 3_2:-57107043 None:intergenic
GCCTTCTACTTTCTCTGGCT+GGG 0.280342 3_2:+57108082 Msa0412990:CDS
TTGATTAAGGAAAATGAATA+TGG 0.284568 3_2:+57106571 Msa0412990:CDS
AGAACAACGCTTTGCAATAA+TGG 0.289322 3_2:+57110371 Msa0412990:CDS
CACACCCTTGCTTCCAAATA+AGG 0.291991 3_2:-57106782 None:intergenic
CATTCTTGTATACACGCTTA+TGG 0.298125 3_2:-57106076 None:intergenic
ATGAGGAAATCTTATTCTTT+CGG 0.306520 3_2:+57108158 Msa0412990:CDS
CAGAAACAAGATTGCCTTAA+GGG 0.313508 3_2:+57110083 Msa0412990:intron
AGCCTTCTACTTTCTCTGGC+TGG 0.317283 3_2:+57108081 Msa0412990:CDS
CAAGGGCTTATTCTCATGAT+TGG 0.318225 3_2:+57107247 Msa0412990:CDS
TTCACAGATGCTGTTGAAAA+AGG 0.328483 3_2:+57106664 Msa0412990:CDS
CGACGCAGTTCTGTCTTTGC+CGG 0.331041 3_2:+57108346 Msa0412990:CDS
GTGTCCCTTGCCCCGAGTTT+CGG 0.339959 3_2:+57107340 Msa0412990:CDS
GAACGCAAACCAGCAACTTT+GGG 0.341182 3_2:+57107908 Msa0412990:CDS
GTCTTTCATCTCCTTCAAAT+AGG 0.348830 3_2:+57107805 Msa0412990:CDS
AATAGAAAACCTTGTCAAAC+TGG 0.355053 3_2:+57106547 Msa0412990:CDS
TATTGATCAAATTCCATTGT+TGG 0.357494 3_2:-57108290 None:intergenic
ATGGAGCCTTCTACTTTCTC+TGG 0.359840 3_2:+57108077 Msa0412990:CDS
TGGTTAGATCACAACAGTTC+AGG 0.360050 3_2:+57110981 Msa0412990:CDS
TTCTCGGCATCTGAAGGGTT+GGG 0.369174 3_2:-57107716 None:intergenic
ACAGAACTGCGTCGGGACTA+TGG 0.369493 3_2:-57108337 None:intergenic
CTACTTGACCCTTCTATCAT+TGG 0.369851 3_2:-57110824 None:intergenic
ATGCCGAATCCAATGATAGA+AGG 0.372921 3_2:+57110815 Msa0412990:CDS
AATGATAGCCCCAAAGTTGC+TGG 0.380794 3_2:-57107917 None:intergenic
GAAGGGTCAAGTAGGCTTGC+TGG 0.383335 3_2:+57110833 Msa0412990:CDS
AGAACGCAAACCAGCAACTT+TGG 0.384644 3_2:+57107907 Msa0412990:CDS
AATATAGATCATGCAGTAAA+GGG 0.387652 3_2:+57110291 Msa0412990:CDS
TGATCCAATAACATTTGAAT+TGG 0.388637 3_2:-57107949 None:intergenic
TGATCTAACCACATTAGAAT+TGG 0.391379 3_2:-57110969 None:intergenic
TTCACCTAGTGCTTCTTCAA+TGG 0.396899 3_2:+57107572 Msa0412990:CDS
TCGACCATTGTATGTTTCTA+CGG 0.397156 3_2:+57107515 Msa0412990:CDS
GACCCTTCTATCATTGGATT+CGG 0.397498 3_2:-57110818 None:intergenic
GACGCAGTTCTGTCTTTGCC+GGG 0.399558 3_2:+57108347 Msa0412990:CDS
ACTCCATCTTCGCCTGCTAC+TGG 0.401480 3_2:+57107654 Msa0412990:CDS
CCGTGATAGAAAATTAGAAT+TGG 0.404340 3_2:+57111150 Msa0412990:CDS
TCTGGCTGGGGCTCGCCTGA+TGG 0.406129 3_2:+57108095 Msa0412990:CDS
GAGCCTTCAACTTCCTTGTC+CGG 0.407002 3_2:+57111118 Msa0412990:CDS
TTTCAAAACCTGCTCCCTTA+AGG 0.407360 3_2:-57110097 None:intergenic
AAATAGCCTTCAAGGTTAGT+AGG 0.408517 3_2:-57110863 None:intergenic
AAATGTCCCTTTGCTCATCA+TGG 0.414986 3_2:+57110200 Msa0412990:CDS
AAGTCGATGAGGTAGGATTA+TGG 0.417281 3_2:+57106695 Msa0412990:CDS
GCACATGGTGTTCTTGAGTC+CGG 0.419484 3_2:+57110329 Msa0412990:CDS
GTATCTTCGGTTCAAGGAAT+AGG 0.421539 3_2:+57107010 Msa0412990:intron
TGTTGCTCTCGATAAAGTTC+TGG 0.421624 3_2:-57111051 None:intergenic
ATTGCGGTTATGTTCATGAT+TGG 0.421921 3_2:+57110174 Msa0412990:CDS
GCTCTTCGTTGTGCTGTCTC+TGG 0.421972 3_2:+57106871 Msa0412990:CDS
ACTCTTGAAAGCCTATTTGA+AGG 0.425158 3_2:-57107816 None:intergenic
AGGGTTGGATCGAAGGAAAT+GGG 0.426387 3_2:+57106727 Msa0412990:intron
CTAGTAGTATCTTCGGTTCA+AGG 0.426572 3_2:+57107004 Msa0412990:intron
ATCTGTTTCTCGGCATCTGA+AGG 0.426852 3_2:-57107722 None:intergenic
CTTCAACTTCCTTGTCCGGT+TGG 0.427100 3_2:+57111122 Msa0412990:CDS
GGTGTGTTGTCTTATATTCT+CGG 0.428366 3_2:+57106799 Msa0412990:CDS
CGAGTGTCCATTTGTTCACC+CGG 0.428988 3_2:+57107272 Msa0412990:CDS
TCAAAGTGAAGCCTTGTTCA+AGG 0.431149 3_2:+57107229 Msa0412990:intron
CCCCAGCCAGAGAAAGTAGA+AGG 0.432620 3_2:-57108083 None:intergenic
TTTCTCGGCATCTGAAGGGT+TGG 0.435722 3_2:-57107717 None:intergenic
CGTGTATACAAGAATGCAAC+AGG 0.436138 3_2:+57106083 Msa0412990:five_prime_UTR
AATTATATTGCTTCGGATCA+CGG 0.437370 3_2:-57110238 None:intergenic
TGCCACATGGTTCCAGTAGC+AGG 0.438980 3_2:-57107666 None:intergenic
CCCTATCTGTGCCGCACACT+CGG 0.441377 3_2:-57106843 None:intergenic
TGCGAAGGATGCTCCAACAA+TGG 0.442122 3_2:+57108277 Msa0412990:CDS
TACATCAAATGTTGATGATC+AGG 0.442359 3_2:+57111204 Msa0412990:CDS
TTGTCTTATATTCTCGGAAC+CGG 0.444288 3_2:+57106805 Msa0412990:CDS
TATATCTCATTGTTTATGTC+AGG 0.444342 3_2:-57107177 None:intergenic
ACCGAGTGTGCGGCACAGAT+AGG 0.444529 3_2:+57106842 Msa0412990:CDS
TTTCTGAAATTCATTACAAT+GGG 0.449878 3_2:-57110270 None:intergenic
ACAATCTCCGACAGCAATGC+AGG 0.452955 3_2:+57110898 Msa0412990:CDS
TTCAACGGGCGAAGTTCCTC+AGG 0.454486 3_2:-57110434 None:intergenic
TAATCTTTCTTCTCAGTTCG+AGG 0.455693 3_2:-57107135 None:intergenic
CATCTGTAATTATATTGCTT+CGG 0.456547 3_2:-57110245 None:intergenic
TCTATCACGGGAGCGCCAAC+CGG 0.458135 3_2:-57111137 None:intergenic
TTCTGCTACCTCAGTTGCCA+TGG 0.458161 3_2:+57108058 Msa0412990:CDS
GTTCTGATGCATCTGCATTA+TGG 0.459156 3_2:-57107889 None:intergenic
TTGCTCGGCATCTGAGGTGT+AGG 0.459489 3_2:-57110632 None:intergenic
TTGCTCGGCATCTGAGGTGT+AGG 0.459489 3_2:-57110722 None:intergenic
CGACCATTGTATGTTTCTAC+GGG 0.459838 3_2:+57107516 Msa0412990:CDS
CGTGATAGAAAATTAGAATT+GGG 0.460547 3_2:+57111151 Msa0412990:CDS
CCATTGATGTGAATGATAAC+TGG 0.461223 3_2:+57106956 Msa0412990:CDS
GCAGAAACAAGATTGCCTTA+AGG 0.462483 3_2:+57110082 Msa0412990:intron
CATGTGTAATGATATTTCCT+TGG 0.464615 3_2:-57107318 None:intergenic
AACTGGTACTAGCATTCAAC+GGG 0.465209 3_2:-57110448 None:intergenic
CAAGATTGCCTTAAGGGAGC+AGG 0.465339 3_2:+57110089 Msa0412990:CDS
ATGTGAAGGCAAAGCAGAAC+TGG 0.466124 3_2:-57110465 None:intergenic
CATGATCCCTTCCGAAACTC+GGG 0.466811 3_2:-57107351 None:intergenic
TGTTGATTAGATTACAATGT+TGG 0.470586 3_2:-57111280 None:intergenic
ATGGCCCAAAATAGCCTTCA+AGG 0.473088 3_2:-57110871 None:intergenic
TGCTGCCTTATTTGGAAGCA+AGG 0.473427 3_2:+57106777 Msa0412990:CDS
ATTAAGCTCATCGCCGCGGA+TGG 0.474232 3_2:-57108132 None:intergenic
CCAGTTATCATTCACATCAA+TGG 0.477903 3_2:-57106956 None:intergenic
GACCACATGGCTCTTCCTGC+AGG 0.478933 3_2:-57110671 None:intergenic
AAATATAGATCATGCAGTAA+AGG 0.479750 3_2:+57110290 Msa0412990:CDS
ATACTACAACCCATACTAGA+AGG 0.480130 3_2:+57107033 Msa0412990:CDS
GAATGCCATTACGTCATCTT+CGG 0.481296 3_2:-57106644 None:intergenic
CAAGATATGATGCCCTTTCG+AGG 0.483484 3_2:+57111023 Msa0412990:CDS
GGCCACATGGTTCTTCCTGC+AGG 0.483695 3_2:-57110581 None:intergenic
CCCTTCCGAAACTCGGGGCA+AGG 0.484081 3_2:-57107345 None:intergenic
CCCTTGCCCCGAGTTTCGGA+AGG 0.487676 3_2:+57107344 Msa0412990:CDS
CCTTCTACTTTCTCTGGCTG+GGG 0.490070 3_2:+57108083 Msa0412990:CDS
ATTTCTGAAATTCATTACAA+TGG 0.490595 3_2:-57110271 None:intergenic
GGTTAGATCACAACAGTTCA+GGG 0.493239 3_2:+57110982 Msa0412990:CDS
AGATGCTACCTCAGTTGCAT+TGG 0.493779 3_2:+57111096 Msa0412990:CDS
TACAATGGTCGAAGCTCCTC+TGG 0.496986 3_2:-57107504 None:intergenic
GTTCCAGTAGCAGGCGAAGA+TGG 0.498100 3_2:-57107657 None:intergenic
CAGAAGTGGCACTTCATCAA+TGG 0.498732 3_2:+57108190 Msa0412990:CDS
AGGCTTTGCAAGGATGAAAC+CGG 0.498936 3_2:+57107447 Msa0412990:CDS
AGCCTTGTTCTATATTGAGC+AGG 0.500362 3_2:-57107429 None:intergenic
GTCCAAGGCGGCATCGATGA+AGG 0.500707 3_2:-57110539 None:intergenic
AATGCAACTGAGGTAGCATC+TGG 0.502784 3_2:-57111094 None:intergenic
CTCATTGTTTATGTCAGGTA+GGG 0.505295 3_2:-57107172 None:intergenic
AATCTGTTGCTCGGCATCTG+AGG 0.505565 3_2:-57110728 None:intergenic
AATGAACTTGTGAAGGAAGA+TGG 0.505957 3_2:+57111256 Msa0412990:CDS
TGAGGTAGCATCTGGAAGCT+TGG 0.508797 3_2:-57111086 None:intergenic
TCGGTATCTAGTAGTATCTT+CGG 0.509155 3_2:+57106997 Msa0412990:intron
AATGTCCCTTTGCTCATCAT+GGG 0.509346 3_2:+57110201 Msa0412990:CDS
GGCAAAGACAGAACTGCGTC+GGG 0.509984 3_2:-57108344 None:intergenic
GATGATTTCCTTAAACAAGT+AGG 0.511967 3_2:+57107075 Msa0412990:CDS
TGCCTTCATCGATGCCGCCT+TGG 0.512659 3_2:+57110537 Msa0412990:CDS
GGAAGGGATCATGTAGCAAA+GGG 0.514566 3_2:+57107361 Msa0412990:CDS
ACATGATCCCTTCCGAAACT+CGG 0.515754 3_2:-57107352 None:intergenic
CAAAGTGAAGCCTTGTTCAA+GGG 0.517860 3_2:+57107230 Msa0412990:intron
GATGTATTATTAAGATATGA+AGG 0.519254 3_2:+57111226 Msa0412990:CDS
TAGGATTATGGTATGGAAGG+AGG 0.520921 3_2:+57106707 Msa0412990:CDS
AGGTAGGATTATGGTATGGA+AGG 0.522426 3_2:+57106704 Msa0412990:CDS
TCAGGTAGGGATGGATCAAT+CGG 0.525749 3_2:-57107159 None:intergenic
AGGATTATGGTATGGAAGGA+GGG 0.525824 3_2:+57106708 Msa0412990:CDS
CGCCTGATGGAAAATTAGAC+TGG 0.526081 3_2:+57108108 Msa0412990:CDS
AATCTGTTGCTCGGCATCTG+AGG 0.528491 3_2:-57110638 None:intergenic
CACATGGTGTTCTTGAGTCC+GGG 0.529152 3_2:+57110330 Msa0412990:CDS
GTGAATCCTACTAACCTTGA+AGG 0.531036 3_2:+57110857 Msa0412990:CDS
AAGGATATATCTGAAGTTGT+TGG 0.532786 3_2:-57110937 None:intergenic
GCAGGCGAAGATGGAGTCAA+AGG 0.532911 3_2:-57107648 None:intergenic
CAACCGGACAAGGAAGTTGA+AGG 0.533070 3_2:-57111121 None:intergenic
CTTTCCCCATGATGAGCAAA+GGG 0.533381 3_2:-57110206 None:intergenic
TTCAGCCGAAGATGACGTAA+TGG 0.534190 3_2:+57106639 Msa0412990:CDS
TTGTTTATGTCAGGTAGGGA+TGG 0.536185 3_2:-57107168 None:intergenic
TATGATATCAATCTGTTGCT+CGG 0.538210 3_2:-57110647 None:intergenic
CCGAGTGTGCGGCACAGATA+GGG 0.539731 3_2:+57106843 Msa0412990:CDS
ATTATTAAGATATGAAGGTA+TGG 0.540701 3_2:+57111231 Msa0412990:CDS
ACGCAAGGCGCCGTGATCCA+AGG 0.541532 3_2:+57107301 Msa0412990:CDS
GCTGCCTTATTTGGAAGCAA+GGG 0.541989 3_2:+57106778 Msa0412990:CDS
AGTTCTGGCTCTGCCTCGAA+AGG 0.544056 3_2:-57111036 None:intergenic
TTGGGTAAATTCTCTTGCGA+AGG 0.544099 3_2:+57108262 Msa0412990:CDS
TCTCATTGTTTATGTCAGGT+AGG 0.546336 3_2:-57107173 None:intergenic
TAACCACATTAGAATTGGTA+AGG 0.551193 3_2:-57110964 None:intergenic
TCATCTACGCCTTCTAGTAT+GGG 0.552732 3_2:-57107042 None:intergenic
TGCTCGGCATCTGAGGTGTA+GGG 0.552789 3_2:-57110631 None:intergenic
TGCTCGGCATCTGAGGTGTA+GGG 0.552789 3_2:-57110721 None:intergenic
TATGGTTAATGAACTTGTGA+AGG 0.556348 3_2:+57111249 Msa0412990:CDS
CGGGTGAACAAATGGACACT+CGG 0.558339 3_2:-57107271 None:intergenic
AGAGAAAGTAGAAGGCTCCA+TGG 0.558901 3_2:-57108075 None:intergenic
TCTGTTTCTCGGCATCTGAA+GGG 0.564138 3_2:-57107721 None:intergenic
GCAGTATTCAATCTGTTGCT+CGG 0.567984 3_2:-57110737 None:intergenic
TCACCTTACCAATTCTAATG+TGG 0.568314 3_2:+57110961 Msa0412990:CDS
GATGAGGTAGGATTATGGTA+TGG 0.568486 3_2:+57106700 Msa0412990:CDS
CGGAAGGGATCATGTAGCAA+AGG 0.569648 3_2:+57107360 Msa0412990:CDS
TTCGGCTTTCGAAACAGAAG+TGG 0.569692 3_2:+57108176 Msa0412990:CDS
ACGGGAGCGCCAACCGGACA+AGG 0.570849 3_2:-57111131 None:intergenic
TTAGAATTGGTAAGGTGAGA+AGG 0.571244 3_2:-57110956 None:intergenic
GATATTGCAGACGGTGTCCA+AGG 0.573927 3_2:-57110554 None:intergenic
GCTGTCGGAGATTGTATCGA+TGG 0.577012 3_2:-57110890 None:intergenic
TGAAGAGAGGACACCTCTCA+TGG 0.577038 3_2:+57106753 Msa0412990:CDS
CCTTCCGAAACTCGGGGCAA+GGG 0.578389 3_2:-57107344 None:intergenic
GCTTTCCCCATGATGAGCAA+AGG 0.578685 3_2:-57110207 None:intergenic
CAATGATAGAAGGGTCAAGT+AGG 0.578738 3_2:+57110825 Msa0412990:CDS
CTTCTTTGCTCACAAACCAG+AGG 0.579205 3_2:+57107488 Msa0412990:CDS
GTGGAGCAGCAACACGATGT+AGG 0.579328 3_2:+57107108 Msa0412990:CDS
GGTGAATTTGAATATGATGT+AGG 0.581011 3_2:-57107555 None:intergenic
GTATACATTGCAGAAGCACT+TGG 0.582995 3_2:-57110506 None:intergenic
GCGATGAGCTTAATAAAATG+AGG 0.583433 3_2:+57108141 Msa0412990:CDS
CTTCTTTGCTCACAAACCTG+AGG 0.585534 3_2:+57110418 Msa0412990:CDS
GATGGAGTCAAAGGTGGTGT+TGG 0.587180 3_2:-57107639 None:intergenic
TGCCGAATCCAATGATAGAA+GGG 0.587494 3_2:+57110816 Msa0412990:CDS
ATATAGAACAAGGCTTTGCA+AGG 0.588932 3_2:+57107437 Msa0412990:CDS
CGGCAAAGACAGAACTGCGT+CGG 0.589265 3_2:-57108345 None:intergenic
TGTTCTATGTACAATTGCCC+CGG 0.590392 3_2:-57108365 None:intergenic
GTTCTGGCTCTGCCTCGAAA+GGG 0.592388 3_2:-57111035 None:intergenic
AATGATATTTCCTTGGATCA+CGG 0.593424 3_2:-57107311 None:intergenic
TACTAGCAACACTTCAACAA+TGG 0.593497 3_2:+57111177 Msa0412990:CDS
CTGAGTCGGAGTCGGCCACA+TGG 0.594746 3_2:-57110594 None:intergenic
CCTTGCCCCGAGTTTCGGAA+GGG 0.595695 3_2:+57107345 Msa0412990:CDS
CAATCTCCGACAGCAATGCA+GGG 0.598628 3_2:+57110899 Msa0412990:CDS
GTACGATTCTGAGTCGGAGT+CGG 0.598804 3_2:-57110602 None:intergenic
GTACATAGAACATGAGCAGA+TGG 0.599257 3_2:+57108376 Msa0412990:CDS
GAGTGTCCATTTGTTCACCC+GGG 0.599662 3_2:+57107273 Msa0412990:CDS
AAATAATAAGTCATGTGCAA+CGG 0.601617 3_2:+57106520 Msa0412990:intron
TGCTAGAGATAATACTCACC+TGG 0.603244 3_2:+57110766 Msa0412990:CDS
GAACTGGTACTAGCATTCAA+CGG 0.603434 3_2:-57110449 None:intergenic
ACGCAGTTCTGTCTTTGCCG+GGG 0.606610 3_2:+57108348 Msa0412990:CDS
AGATTGATATCATATCCTGC+AGG 0.608072 3_2:+57110656 Msa0412990:CDS
CTTTATTGATCACAGTAGCA+TGG 0.608238 3_2:+57108013 Msa0412990:CDS
TGATGCATCTGCATTATGGT+CGG 0.608731 3_2:-57107885 None:intergenic
TGATACCCCTGCATTGCTGT+CGG 0.611093 3_2:-57110905 None:intergenic
TCTGCAATATCATATCCTGC+AGG 0.614316 3_2:+57110566 Msa0412990:CDS
TCGGTTAACATCAACACGAC+CGG 0.616279 3_2:-57106824 None:intergenic
ATGTTCTGCTGCTTCTGCCG+AGG 0.617687 3_2:+57106894 Msa0412990:CDS
GAACATGAAGTCGATGAGGT+AGG 0.617990 3_2:+57106688 Msa0412990:CDS
CTGAGTCGGAGTCGACCACA+TGG 0.618576 3_2:-57110684 None:intergenic
AGAAGGCTCCATGGCAACTG+AGG 0.621343 3_2:-57108066 None:intergenic
AATAAGGCAGCAACCATGAG+AGG 0.621887 3_2:-57106766 None:intergenic
AAGCAAAAGCTTGATAACCT+CGG 0.625088 3_2:-57106911 None:intergenic
AGTGTCCATTTGTTCACCCG+GGG 0.625388 3_2:+57107274 Msa0412990:CDS
TGAGAATAAGCCCTTGAACA+AGG 0.627841 3_2:-57107240 None:intergenic
AACGCAAACCAGCAACTTTG+GGG 0.628398 3_2:+57107909 Msa0412990:CDS
GAATCCATTGAAGAAGCACT+AGG 0.630832 3_2:-57107576 None:intergenic
ATTGGATCACCACAATTCAG+AGG 0.631456 3_2:+57107963 Msa0412990:CDS
ACATTCAAAGTGCGGCATTG+CGG 0.631811 3_2:+57110158 Msa0412990:CDS
AAGGCATCTCCTCTGAATTG+TGG 0.632637 3_2:-57107972 None:intergenic
TGATGTATACATTCAAAGTG+CGG 0.634386 3_2:+57110150 Msa0412990:CDS
CTGAATCTGAGTCTGCCACA+TGG 0.636502 3_2:-57107679 None:intergenic
TTTGAATATAATGTATGTGA+AGG 0.637611 3_2:-57110479 None:intergenic
GGCGAAGATGGAGTCAAAGG+TGG 0.640500 3_2:-57107645 None:intergenic
GCAGATTGTATCGAAGAAGA+CGG 0.640822 3_2:-57107615 None:intergenic
ACTGTAGTACGAATCTGAGT+CGG 0.641474 3_2:-57110698 None:intergenic
ATGGCAACTGAGGTAGCAGA+AGG 0.642309 3_2:-57108056 None:intergenic
GCAGGATATGATATTGCAGA+CGG 0.643899 3_2:-57110563 None:intergenic
ATCCTGCTCAATATAGAACA+AGG 0.645051 3_2:+57107427 Msa0412990:CDS
ATATAGATCATGCAGTAAAG+GGG 0.646866 3_2:+57110292 Msa0412990:CDS
AGGAAATGGGATATGAAGAG+AGG 0.649200 3_2:+57106740 Msa0412990:intron
TGAAGGCTCCAATGCAACTG+AGG 0.649434 3_2:-57111104 None:intergenic
ATGTCCCTTTGCTCATCATG+GGG 0.650802 3_2:+57110202 Msa0412990:CDS
CTTTATCGAGAGCAACAGCA+TGG 0.651217 3_2:+57111057 Msa0412990:CDS
ACTGTAGTACGATTCTGAGT+CGG 0.653294 3_2:-57110608 None:intergenic
GATCTCGCTTTGCTTTGACA+AGG 0.653709 3_2:-57107991 None:intergenic
AGAGACAGCACAACGAAGAG+CGG 0.656643 3_2:-57106869 None:intergenic
AAATTAGACTGGTCCATCCG+CGG 0.660945 3_2:+57108119 Msa0412990:CDS
TTAATCAAACCAGTTTGACA+AGG 0.662325 3_2:-57106556 None:intergenic
AGGTGAACATGAAGTCGATG+AGG 0.663184 3_2:+57106684 Msa0412990:CDS
ATGATCCCTTCCGAAACTCG+GGG 0.666543 3_2:-57107350 None:intergenic
GTATCGACTAGGATGCAGCC+CGG 0.668994 3_2:-57110348 None:intergenic
AGCGTTGTTCTGTATCGACT+AGG 0.678911 3_2:-57110359 None:intergenic
GTTGATGTTAACCGAGTGTG+CGG 0.690781 3_2:+57106832 Msa0412990:CDS
AATCTCCGACAGCAATGCAG+GGG 0.691632 3_2:+57110900 Msa0412990:CDS
TTGAAGGAGATGAAAGACTG+AGG 0.692160 3_2:-57107800 None:intergenic
GTTAGATCACAACAGTTCAG+GGG 0.713618 3_2:+57110983 Msa0412990:CDS
GTGTCCATTTGTTCACCCGG+GGG 0.714093 3_2:+57107275 Msa0412990:CDS
ATTGCAGACGGTGTCCAAGG+CGG 0.715505 3_2:-57110551 None:intergenic
CGCCTGCTACTGGAACCATG+TGG 0.722982 3_2:+57107664 Msa0412990:CDS
GAAGGGATCATGTAGCAAAG+GGG 0.728972 3_2:+57107362 Msa0412990:CDS
GAACCCGTAGAAACATACAA+TGG 0.752003 3_2:-57107519 None:intergenic
GATGCTTGTGAATATGCACA+TGG 0.754358 3_2:+57107384 Msa0412990:CDS
GATGAATGTCAATATGCACA+TGG 0.762142 3_2:+57110314 Msa0412990:CDS
ATCCTGCAGGAAGAGCCATG+TGG 0.775918 3_2:+57110669 Msa0412990:CDS
ATCCTGCAGGAAGAACCATG+TGG 0.814597 3_2:+57110579 Msa0412990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATATATATATATATACA+AGG + chr3_2:57108472-57108491 Msa0412990:intron 10.0%
!!! GTTTTTTTTTTATGTTACAA+AGG + chr3_2:57106180-57106199 Msa0412990:intron 15.0%
!! TAATTAAACAATAAACAGAA+AGG - chr3_2:57106362-57106381 None:intergenic 15.0%
!!! AATTAAACTGAAATCTTTTA+AGG + chr3_2:57106377-57106396 Msa0412990:intron 15.0%
!!! ATTAAACTGAAATCTTTTAA+GGG + chr3_2:57106378-57106397 Msa0412990:intron 15.0%
!! TCTAATGTTAATTATAACAT+TGG + chr3_2:57108408-57108427 Msa0412990:intron 15.0%
!! ATAAGAAAAATACATAAAGA+GGG - chr3_2:57109581-57109600 None:intergenic 15.0%
!! AATAAGAAAAATACATAAAG+AGG - chr3_2:57109582-57109601 None:intergenic 15.0%
!!! ATTTGGTTATTTTGTTAATA+AGG + chr3_2:57109924-57109943 Msa0412990:intron 15.0%
!! TCATATCTTGAATTAAAAAA+TGG - chr3_2:57111013-57111032 None:intergenic 15.0%
!!! TTTTTGCTATTTGGTTAATA+AGG + chr3_2:57106140-57106159 Msa0412990:intron 20.0%
!!! TTATGCTTGTTTTAGAATTA+TGG + chr3_2:57106204-57106223 Msa0412990:intron 20.0%
!! TTGATTAAGGAAAATGAATA+TGG + chr3_2:57106571-57106590 Msa0412990:CDS 20.0%
!!! AAAAAGTTTTTAAGGTTAGT+AGG - chr3_2:57107846-57107865 None:intergenic 20.0%
!!! ACTAACCTTAAAAACTTTTT+CGG + chr3_2:57107846-57107865 Msa0412990:CDS 20.0%
!! TAGTAAAATCAACTAATTGT+TGG + chr3_2:57108561-57108580 Msa0412990:intron 20.0%
!! AAAAATAAGGATTAAAGGAA+AGG - chr3_2:57108671-57108690 None:intergenic 20.0%
!! GCTAAAAAAATAAGGATTAA+AGG - chr3_2:57108676-57108695 None:intergenic 20.0%
!! AATGTACAAAATATTAAGAC+AGG - chr3_2:57108754-57108773 None:intergenic 20.0%
!! ATAAAATAACTGCACAATAT+TGG + chr3_2:57108929-57108948 Msa0412990:intron 20.0%
!!! TTTGTTGTTTTATGATTTTG+AGG - chr3_2:57109223-57109242 None:intergenic 20.0%
!! TAAAAGAACTTACATGAATA+AGG - chr3_2:57109326-57109345 None:intergenic 20.0%
!!! ATTTTTCTTATTCTTCTTGA+TGG + chr3_2:57109590-57109609 Msa0412990:intron 20.0%
!!! TTTTTCTTATTCTTCTTGAT+GGG + chr3_2:57109591-57109610 Msa0412990:intron 20.0%
!! AAAACAATACAAAGAATTCT+GGG - chr3_2:57109901-57109920 None:intergenic 20.0%
!! CAAAAAATAAGAACAAACAA+TGG - chr3_2:57109965-57109984 None:intergenic 20.0%
!!! TTTCTGAAATTCATTACAAT+GGG - chr3_2:57110273-57110292 None:intergenic 20.0%
!!! ATTTCTGAAATTCATTACAA+TGG - chr3_2:57110274-57110293 None:intergenic 20.0%
!! TTTGAATATAATGTATGTGA+AGG - chr3_2:57110482-57110501 None:intergenic 20.0%
!! GATGTATTATTAAGATATGA+AGG + chr3_2:57111226-57111245 Msa0412990:CDS 20.0%
!! ATTATTAAGATATGAAGGTA+TGG + chr3_2:57111231-57111250 Msa0412990:CDS 20.0%
!!! GTATTTGCTTTTTAAGATTG+TGG + chr3_2:57106037-57106056 Msa0412990:intron 25.0%
!!! AACAACTTGTTTTTGCTATT+TGG + chr3_2:57106131-57106150 Msa0412990:intron 25.0%
! AAAAACATAGCAACAAGTAT+TGG - chr3_2:57106270-57106289 None:intergenic 25.0%
! AAATAATAAGTCATGTGCAA+CGG + chr3_2:57106520-57106539 Msa0412990:intron 25.0%
! ATTGAAAACCTACTTGTTTA+AGG - chr3_2:57107086-57107105 None:intergenic 25.0%
!! TAAACAAGTAGGTTTTCAAT+TGG + chr3_2:57107086-57107105 Msa0412990:CDS 25.0%
! TATATCTCATTGTTTATGTC+AGG - chr3_2:57107180-57107199 None:intergenic 25.0%
!!! CTAACCTTAAAAACTTTTTC+GGG + chr3_2:57107847-57107866 Msa0412990:CDS 25.0%
! CTTACCAATTCAAATGTTAT+TGG + chr3_2:57107945-57107964 Msa0412990:CDS 25.0%
! TGATCCAATAACATTTGAAT+TGG - chr3_2:57107952-57107971 None:intergenic 25.0%
! ATGAGGAAATCTTATTCTTT+CGG + chr3_2:57108158-57108177 Msa0412990:CDS 25.0%
!!! TATTTTTAAGGCATGAATCT+TGG + chr3_2:57108243-57108262 Msa0412990:CDS 25.0%
!!! ATTTTTAAGGCATGAATCTT+GGG + chr3_2:57108244-57108263 Msa0412990:CDS 25.0%
! TATTGATCAAATTCCATTGT+TGG - chr3_2:57108293-57108312 None:intergenic 25.0%
! AATTGTTGGCAATATGTAAA+TGG + chr3_2:57108575-57108594 Msa0412990:intron 25.0%
! CTTATGATTTAAGTGTACAA+GGG - chr3_2:57108698-57108717 None:intergenic 25.0%
! ATTTAGAAACTTGAGAAACA+AGG - chr3_2:57109279-57109298 None:intergenic 25.0%
!!! TTTCTAAAACCTTCAAGTTT+TGG + chr3_2:57109516-57109535 Msa0412990:intron 25.0%
!!! GAGATTACAATGTGTTTTTT+TGG + chr3_2:57109658-57109677 Msa0412990:intron 25.0%
!! CTAAGAAAGTTTCTGAAAAA+TGG + chr3_2:57109684-57109703 Msa0412990:intron 25.0%
! TTAGATTAAGAACACAACAA+TGG - chr3_2:57109812-57109831 None:intergenic 25.0%
! CAAAACAATACAAAGAATTC+TGG - chr3_2:57109902-57109921 None:intergenic 25.0%
!!! CTTTGTATTGTTTTGCTATT+TGG + chr3_2:57109907-57109926 Msa0412990:intron 25.0%
! CTACAAAATCATCAATTACT+AGG - chr3_2:57110054-57110073 None:intergenic 25.0%
! CATCTGTAATTATATTGCTT+CGG - chr3_2:57110248-57110267 None:intergenic 25.0%
! AAATATAGATCATGCAGTAA+AGG + chr3_2:57110290-57110309 Msa0412990:CDS 25.0%
! AATATAGATCATGCAGTAAA+GGG + chr3_2:57110291-57110310 Msa0412990:CDS 25.0%
!! CAATTCTAATTTTCTATCAC+GGG - chr3_2:57111152-57111171 None:intergenic 25.0%
!! CCAATTCTAATTTTCTATCA+CGG - chr3_2:57111153-57111172 None:intergenic 25.0%
! CGTGATAGAAAATTAGAATT+GGG + chr3_2:57111151-57111170 Msa0412990:CDS 25.0%
CATAAGAAATCTCCTCAAAT+AGG + chr3_2:57105997-57106016 Msa0412990:intron 30.0%
GAATCAGATAGGGAAATAAA+AGG - chr3_2:57106340-57106359 None:intergenic 30.0%
AAACAGAAAGGAATCAGATA+GGG - chr3_2:57106350-57106369 None:intergenic 30.0%
TAAACAGAAAGGAATCAGAT+AGG - chr3_2:57106351-57106370 None:intergenic 30.0%
! GATTTTGCAGATTCTGTATA+AGG + chr3_2:57106474-57106493 Msa0412990:intron 30.0%
AATAGAAAACCTTGTCAAAC+TGG + chr3_2:57106547-57106566 Msa0412990:CDS 30.0%
TTAATCAAACCAGTTTGACA+AGG - chr3_2:57106559-57106578 None:intergenic 30.0%
!! TTGTCAAACTGGTTTGATTA+AGG + chr3_2:57106558-57106577 Msa0412990:CDS 30.0%
GATGATTTCCTTAAACAAGT+AGG + chr3_2:57107075-57107094 Msa0412990:CDS 30.0%
AATGATATTTCCTTGGATCA+CGG - chr3_2:57107314-57107333 None:intergenic 30.0%
CATGTGTAATGATATTTCCT+TGG - chr3_2:57107321-57107340 None:intergenic 30.0%
GGTGAATTTGAATATGATGT+AGG - chr3_2:57107558-57107577 None:intergenic 30.0%
! ATGACCCGAAAAAGTTTTTA+AGG - chr3_2:57107854-57107873 None:intergenic 30.0%
!! ACGATCCAGATGTATTTTTA+AGG + chr3_2:57108231-57108250 Msa0412990:CDS 30.0%
TCATGCCTTAAAAATACATC+TGG - chr3_2:57108239-57108258 None:intergenic 30.0%
TACAAGGAAAAAATTTGCCT+AGG + chr3_2:57108488-57108507 Msa0412990:intron 30.0%
ACAAGGAAAAAATTTGCCTA+GGG + chr3_2:57108489-57108508 Msa0412990:intron 30.0%
GAAAGGAATATTGCATTTAC+TGG - chr3_2:57108654-57108673 None:intergenic 30.0%
GTACAAGGGCTAAAAAAATA+AGG - chr3_2:57108684-57108703 None:intergenic 30.0%
CCTTATGATTTAAGTGTACA+AGG - chr3_2:57108699-57108718 None:intergenic 30.0%
CCTTGTACACTTAAATCATA+AGG + chr3_2:57108696-57108715 Msa0412990:intron 30.0%
TCCACTAAACGCAAAAATTA+AGG + chr3_2:57108826-57108845 Msa0412990:intron 30.0%
! TCCTTAATTTTTGCGTTTAG+TGG - chr3_2:57108830-57108849 None:intergenic 30.0%
AATATCAGCTCAAAACAGTT+AGG - chr3_2:57109115-57109134 None:intergenic 30.0%
!! AACTGTTTTGAGCTGATATT+TGG + chr3_2:57109115-57109134 Msa0412990:intron 30.0%
TCTAAATCTTCACCAGATTT+CGG + chr3_2:57109292-57109311 Msa0412990:intron 30.0%
TTTGAAAAGATCGCATCTTT+AGG - chr3_2:57109403-57109422 None:intergenic 30.0%
! AAGATTGCAATGTGTTTTCT+TGG + chr3_2:57109431-57109450 Msa0412990:intron 30.0%
!! GTGTTTTGAATTGTTTGTTC+TGG + chr3_2:57109708-57109727 Msa0412990:intron 30.0%
CTAACGATATTAAATGCAGT+TGG + chr3_2:57109828-57109847 Msa0412990:intron 30.0%
AGGAAATTAGCAACATGTAT+TGG - chr3_2:57110034-57110053 None:intergenic 30.0%
TGATGTATACATTCAAAGTG+CGG + chr3_2:57110150-57110169 Msa0412990:CDS 30.0%
AATTATATTGCTTCGGATCA+CGG - chr3_2:57110241-57110260 None:intergenic 30.0%
ATATAGATCATGCAGTAAAG+GGG + chr3_2:57110292-57110311 Msa0412990:CDS 30.0%
TATGATATCAATCTGTTGCT+CGG - chr3_2:57110650-57110669 None:intergenic 30.0%
ATTCGAAAAATTTCATGTCC+AGG - chr3_2:57110787-57110806 None:intergenic 30.0%
! AAGGATATATCTGAAGTTGT+TGG - chr3_2:57110940-57110959 None:intergenic 30.0%
TAACCACATTAGAATTGGTA+AGG - chr3_2:57110967-57110986 None:intergenic 30.0%
TGATCTAACCACATTAGAAT+TGG - chr3_2:57110972-57110991 None:intergenic 30.0%
CCGTGATAGAAAATTAGAAT+TGG + chr3_2:57111150-57111169 Msa0412990:CDS 30.0%
!! TACATCAAATGTTGATGATC+AGG + chr3_2:57111204-57111223 Msa0412990:CDS 30.0%
TATGGTTAATGAACTTGTGA+AGG + chr3_2:57111249-57111268 Msa0412990:CDS 30.0%
ATTCAGAACACACCTATTTG+AGG - chr3_2:57106012-57106031 None:intergenic 35.0%
CATTCTTGTATACACGCTTA+TGG - chr3_2:57106079-57106098 None:intergenic 35.0%
TGGTTAATAAGGTTGTGCAA+CGG + chr3_2:57106151-57106170 Msa0412990:intron 35.0%
TTCACAGATGCTGTTGAAAA+AGG + chr3_2:57106664-57106683 Msa0412990:CDS 35.0%
GGTGTGTTGTCTTATATTCT+CGG + chr3_2:57106799-57106818 Msa0412990:CDS 35.0%
TTGTCTTATATTCTCGGAAC+CGG + chr3_2:57106805-57106824 Msa0412990:CDS 35.0%
! AAGCAAAAGCTTGATAACCT+CGG - chr3_2:57106914-57106933 None:intergenic 35.0%
CCAGTTATCATTCACATCAA+TGG - chr3_2:57106959-57106978 None:intergenic 35.0%
CCATTGATGTGAATGATAAC+TGG + chr3_2:57106956-57106975 Msa0412990:CDS 35.0%
TCGGTATCTAGTAGTATCTT+CGG + chr3_2:57106997-57107016 Msa0412990:intron 35.0%
ATACTACAACCCATACTAGA+AGG + chr3_2:57107033-57107052 Msa0412990:CDS 35.0%
! ACAAGTAGGTTTTCAATTGG+TGG + chr3_2:57107089-57107108 Msa0412990:CDS 35.0%
TAATCTTTCTTCTCAGTTCG+AGG - chr3_2:57107138-57107157 None:intergenic 35.0%
CTCATTGTTTATGTCAGGTA+GGG - chr3_2:57107175-57107194 None:intergenic 35.0%
TCTCATTGTTTATGTCAGGT+AGG - chr3_2:57107176-57107195 None:intergenic 35.0%
!! CACATGGTATTTTTGAATGC+TGG + chr3_2:57107400-57107419 Msa0412990:CDS 35.0%
ATCCTGCTCAATATAGAACA+AGG + chr3_2:57107427-57107446 Msa0412990:CDS 35.0%
ATATAGAACAAGGCTTTGCA+AGG + chr3_2:57107437-57107456 Msa0412990:CDS 35.0%
! TCGACCATTGTATGTTTCTA+CGG + chr3_2:57107515-57107534 Msa0412990:CDS 35.0%
!! GCAGTTTTCAATCTGTTTCT+CGG - chr3_2:57107735-57107754 None:intergenic 35.0%
GTCTTTCATCTCCTTCAAAT+AGG + chr3_2:57107805-57107824 Msa0412990:CDS 35.0%
ACTCTTGAAAGCCTATTTGA+AGG - chr3_2:57107819-57107838 None:intergenic 35.0%
CTTTATTGATCACAGTAGCA+TGG + chr3_2:57108013-57108032 Msa0412990:CDS 35.0%
GCGATGAGCTTAATAAAATG+AGG + chr3_2:57108141-57108160 Msa0412990:CDS 35.0%
!! TAAATAAAGACTCTAGAGCG+CGG - chr3_2:57108439-57108458 None:intergenic 35.0%
GTTGGCAATATGTAAATGGT+TGG + chr3_2:57108579-57108598 Msa0412990:intron 35.0%
GTGCTCTATACTTAGAGTAA+TGG - chr3_2:57108615-57108634 None:intergenic 35.0%
! ACTCTAAGTATAGAGCACTA+AGG + chr3_2:57108617-57108636 Msa0412990:intron 35.0%
CTGAATAGATAAGTCGTATC+AGG - chr3_2:57108877-57108896 None:intergenic 35.0%
ATTACATAGCTCCCATCATA+AGG + chr3_2:57108990-57109009 Msa0412990:intron 35.0%
! TTTTGAGCTGATATTTGGCT+TGG + chr3_2:57109120-57109139 Msa0412990:intron 35.0%
TTAGAAGAAGAGCTGGTAAT+AGG + chr3_2:57109160-57109179 Msa0412990:intron 35.0%
AAACTTGAGAAACAAGGCAA+AGG - chr3_2:57109273-57109292 None:intergenic 35.0%
AAGAAGAACTTACATGAGCA+AGG - chr3_2:57109550-57109569 None:intergenic 35.0%
!! CTTGATGGGTCATTAAGTTT+TGG + chr3_2:57109605-57109624 Msa0412990:intron 35.0%
CAGAAACAAGATTGCCTTAA+GGG + chr3_2:57110083-57110102 Msa0412990:intron 35.0%
ATTGCGGTTATGTTCATGAT+TGG + chr3_2:57110174-57110193 Msa0412990:CDS 35.0%
GATGAATGTCAATATGCACA+TGG + chr3_2:57110314-57110333 Msa0412990:CDS 35.0%
AGAACAACGCTTTGCAATAA+TGG + chr3_2:57110371-57110390 Msa0412990:CDS 35.0%
AGATTGATATCATATCCTGC+AGG + chr3_2:57110656-57110675 Msa0412990:CDS 35.0%
AAATAGCCTTCAAGGTTAGT+AGG - chr3_2:57110866-57110885 None:intergenic 35.0%
! ACTAACCTTGAAGGCTATTT+TGG + chr3_2:57110866-57110885 Msa0412990:CDS 35.0%
!! CTAACCTTGAAGGCTATTTT+GGG + chr3_2:57110867-57110886 Msa0412990:CDS 35.0%
TTAGAATTGGTAAGGTGAGA+AGG - chr3_2:57110959-57110978 None:intergenic 35.0%
TCACCTTACCAATTCTAATG+TGG + chr3_2:57110961-57110980 Msa0412990:CDS 35.0%
TACTAGCAACACTTCAACAA+TGG + chr3_2:57111177-57111196 Msa0412990:CDS 35.0%
AATGAACTTGTGAAGGAAGA+TGG + chr3_2:57111256-57111275 Msa0412990:CDS 35.0%
CGTGTATACAAGAATGCAAC+AGG + chr3_2:57106083-57106102 Msa0412990:five_prime_UTR 40.0%
!! ACAGGTTTTATCGTTCACTG+TGG + chr3_2:57106101-57106120 Msa0412990:intron 40.0%
! TAAGGTTGTGCAACGGTTTT+CGG + chr3_2:57106158-57106177 Msa0412990:intron 40.0%
GAATGCCATTACGTCATCTT+CGG - chr3_2:57106647-57106666 None:intergenic 40.0%
AAGTCGATGAGGTAGGATTA+TGG + chr3_2:57106695-57106714 Msa0412990:CDS 40.0%
GATGAGGTAGGATTATGGTA+TGG + chr3_2:57106700-57106719 Msa0412990:CDS 40.0%
AGGTAGGATTATGGTATGGA+AGG + chr3_2:57106704-57106723 Msa0412990:CDS 40.0%
TAGGATTATGGTATGGAAGG+AGG + chr3_2:57106707-57106726 Msa0412990:CDS 40.0%
AGGATTATGGTATGGAAGGA+GGG + chr3_2:57106708-57106727 Msa0412990:CDS 40.0%
AGGAAATGGGATATGAAGAG+AGG + chr3_2:57106740-57106759 Msa0412990:intron 40.0%
CTAGTAGTATCTTCGGTTCA+AGG + chr3_2:57107004-57107023 Msa0412990:intron 40.0%
GTATCTTCGGTTCAAGGAAT+AGG + chr3_2:57107010-57107029 Msa0412990:intron 40.0%
TCATCTACGCCTTCTAGTAT+GGG - chr3_2:57107045-57107064 None:intergenic 40.0%
ATCATCTACGCCTTCTAGTA+TGG - chr3_2:57107046-57107065 None:intergenic 40.0%
TTGTTTATGTCAGGTAGGGA+TGG - chr3_2:57107171-57107190 None:intergenic 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr3_2:57107229-57107248 Msa0412990:intron 40.0%
!! CAAAGTGAAGCCTTGTTCAA+GGG + chr3_2:57107230-57107249 Msa0412990:intron 40.0%
TGAGAATAAGCCCTTGAACA+AGG - chr3_2:57107243-57107262 None:intergenic 40.0%
CAAGGGCTTATTCTCATGAT+TGG + chr3_2:57107247-57107266 Msa0412990:CDS 40.0%
GATGCTTGTGAATATGCACA+TGG + chr3_2:57107384-57107403 Msa0412990:CDS 40.0%
!! AGCCTTGTTCTATATTGAGC+AGG - chr3_2:57107432-57107451 None:intergenic 40.0%
! CGACCATTGTATGTTTCTAC+GGG + chr3_2:57107516-57107535 Msa0412990:CDS 40.0%
GAACCCGTAGAAACATACAA+TGG - chr3_2:57107522-57107541 None:intergenic 40.0%
TTCACCTAGTGCTTCTTCAA+TGG + chr3_2:57107572-57107591 Msa0412990:CDS 40.0%
!! GAATCCATTGAAGAAGCACT+AGG - chr3_2:57107579-57107598 None:intergenic 40.0%
GCAGATTGTATCGAAGAAGA+CGG - chr3_2:57107618-57107637 None:intergenic 40.0%
TTGAAGGAGATGAAAGACTG+AGG - chr3_2:57107803-57107822 None:intergenic 40.0%
TGATGCATCTGCATTATGGT+CGG - chr3_2:57107888-57107907 None:intergenic 40.0%
GTTCTGATGCATCTGCATTA+TGG - chr3_2:57107892-57107911 None:intergenic 40.0%
ATTGGATCACCACAATTCAG+AGG + chr3_2:57107963-57107982 Msa0412990:CDS 40.0%
! GACCAGTCTAATTTTCCATC+AGG - chr3_2:57108113-57108132 None:intergenic 40.0%
! TTTTATTAAGCTCATCGCCG+CGG - chr3_2:57108139-57108158 None:intergenic 40.0%
TTGGGTAAATTCTCTTGCGA+AGG + chr3_2:57108262-57108281 Msa0412990:CDS 40.0%
TGTTCTATGTACAATTGCCC+CGG - chr3_2:57108368-57108387 None:intergenic 40.0%
GTACATAGAACATGAGCAGA+TGG + chr3_2:57108376-57108395 Msa0412990:CDS 40.0%
AGGAAAAAATTTGCCTAGGG+AGG + chr3_2:57108492-57108511 Msa0412990:intron 40.0%
AAGCAAAGTTACTCTGCATG+AGG - chr3_2:57109025-57109044 None:intergenic 40.0%
CCAGATTTCAGAGTTAGTTG+AGG - chr3_2:57109064-57109083 None:intergenic 40.0%
!! CCTCAACTAACTCTGAAATC+TGG + chr3_2:57109061-57109080 Msa0412990:intron 40.0%
ATCTGACTTAGAAGAAGAGC+TGG + chr3_2:57109153-57109172 Msa0412990:intron 40.0%
AAACAAGGCAAAGGAAGAAG+TGG - chr3_2:57109264-57109283 None:intergenic 40.0%
GAAACAGCACCAAAACTTGA+AGG - chr3_2:57109528-57109547 None:intergenic 40.0%
ATGCTTTCTCTTTCACTCTC+TGG + chr3_2:57109767-57109786 Msa0412990:intron 40.0%
GCAGAAACAAGATTGCCTTA+AGG + chr3_2:57110082-57110101 Msa0412990:intron 40.0%
TTTCAAAACCTGCTCCCTTA+AGG - chr3_2:57110100-57110119 None:intergenic 40.0%
!!! TAAGGGAGCAGGTTTTGAAA+TGG + chr3_2:57110100-57110119 Msa0412990:CDS 40.0%
AAATGTCCCTTTGCTCATCA+TGG + chr3_2:57110200-57110219 Msa0412990:CDS 40.0%
AATGTCCCTTTGCTCATCAT+GGG + chr3_2:57110201-57110220 Msa0412990:CDS 40.0%
AACTGGTACTAGCATTCAAC+GGG - chr3_2:57110451-57110470 None:intergenic 40.0%
GAACTGGTACTAGCATTCAA+CGG - chr3_2:57110452-57110471 None:intergenic 40.0%
!! GTATACATTGCAGAAGCACT+TGG - chr3_2:57110509-57110528 None:intergenic 40.0%
GCAGGATATGATATTGCAGA+CGG - chr3_2:57110566-57110585 None:intergenic 40.0%
TCTGCAATATCATATCCTGC+AGG + chr3_2:57110566-57110585 Msa0412990:CDS 40.0%
ACTGTAGTACGATTCTGAGT+CGG - chr3_2:57110611-57110630 None:intergenic 40.0%
ACTGTAGTACGAATCTGAGT+CGG - chr3_2:57110701-57110720 None:intergenic 40.0%
GCAGTATTCAATCTGTTGCT+CGG - chr3_2:57110740-57110759 None:intergenic 40.0%
TGCTAGAGATAATACTCACC+TGG + chr3_2:57110766-57110785 Msa0412990:CDS 40.0%
ATGCCGAATCCAATGATAGA+AGG + chr3_2:57110815-57110834 Msa0412990:CDS 40.0%
TGCCGAATCCAATGATAGAA+GGG + chr3_2:57110816-57110835 Msa0412990:CDS 40.0%
GACCCTTCTATCATTGGATT+CGG - chr3_2:57110821-57110840 None:intergenic 40.0%
CTACTTGACCCTTCTATCAT+TGG - chr3_2:57110827-57110846 None:intergenic 40.0%
CAATGATAGAAGGGTCAAGT+AGG + chr3_2:57110825-57110844 Msa0412990:CDS 40.0%
GTGAATCCTACTAACCTTGA+AGG + chr3_2:57110857-57110876 Msa0412990:CDS 40.0%
TGGTTAGATCACAACAGTTC+AGG + chr3_2:57110981-57111000 Msa0412990:CDS 40.0%
GGTTAGATCACAACAGTTCA+GGG + chr3_2:57110982-57111001 Msa0412990:CDS 40.0%
GTTAGATCACAACAGTTCAG+GGG + chr3_2:57110983-57111002 Msa0412990:CDS 40.0%
TGTTGCTCTCGATAAAGTTC+TGG - chr3_2:57111054-57111073 None:intergenic 40.0%
TTCAGCCGAAGATGACGTAA+TGG + chr3_2:57106639-57106658 Msa0412990:CDS 45.0%
AGGTGAACATGAAGTCGATG+AGG + chr3_2:57106684-57106703 Msa0412990:CDS 45.0%
GAACATGAAGTCGATGAGGT+AGG + chr3_2:57106688-57106707 Msa0412990:CDS 45.0%
TTATGGTATGGAAGGAGGGT+TGG + chr3_2:57106712-57106731 Msa0412990:intron 45.0%
AGGGTTGGATCGAAGGAAAT+GGG + chr3_2:57106727-57106746 Msa0412990:intron 45.0%
AATAAGGCAGCAACCATGAG+AGG - chr3_2:57106769-57106788 None:intergenic 45.0%
! CTCATGGTTGCTGCCTTATT+TGG + chr3_2:57106769-57106788 Msa0412990:CDS 45.0%
!! TGCTGCCTTATTTGGAAGCA+AGG + chr3_2:57106777-57106796 Msa0412990:CDS 45.0%
!! GCTGCCTTATTTGGAAGCAA+GGG + chr3_2:57106778-57106797 Msa0412990:CDS 45.0%
CACACCCTTGCTTCCAAATA+AGG - chr3_2:57106785-57106804 None:intergenic 45.0%
TCGGTTAACATCAACACGAC+CGG - chr3_2:57106827-57106846 None:intergenic 45.0%
GTTGATGTTAACCGAGTGTG+CGG + chr3_2:57106832-57106851 Msa0412990:CDS 45.0%
TCAGGTAGGGATGGATCAAT+CGG - chr3_2:57107162-57107181 None:intergenic 45.0%
ACATGATCCCTTCCGAAACT+CGG - chr3_2:57107355-57107374 None:intergenic 45.0%
GGAAGGGATCATGTAGCAAA+GGG + chr3_2:57107361-57107380 Msa0412990:CDS 45.0%
GAAGGGATCATGTAGCAAAG+GGG + chr3_2:57107362-57107381 Msa0412990:CDS 45.0%
AGGCTTTGCAAGGATGAAAC+CGG + chr3_2:57107447-57107466 Msa0412990:CDS 45.0%
AGCAAAGAAGCAAACCTTCC+TGG - chr3_2:57107478-57107497 None:intergenic 45.0%
CTTCTTTGCTCACAAACCAG+AGG + chr3_2:57107488-57107507 Msa0412990:CDS 45.0%
! TCTGTTTCTCGGCATCTGAA+GGG - chr3_2:57107724-57107743 None:intergenic 45.0%
! ATCTGTTTCTCGGCATCTGA+AGG - chr3_2:57107725-57107744 None:intergenic 45.0%
AGAACGCAAACCAGCAACTT+TGG + chr3_2:57107907-57107926 Msa0412990:CDS 45.0%
GAACGCAAACCAGCAACTTT+GGG + chr3_2:57107908-57107927 Msa0412990:CDS 45.0%
AACGCAAACCAGCAACTTTG+GGG + chr3_2:57107909-57107928 Msa0412990:CDS 45.0%
AATGATAGCCCCAAAGTTGC+TGG - chr3_2:57107920-57107939 None:intergenic 45.0%
! AAGGCATCTCCTCTGAATTG+TGG - chr3_2:57107975-57107994 None:intergenic 45.0%
GATCTCGCTTTGCTTTGACA+AGG - chr3_2:57107994-57108013 None:intergenic 45.0%
AGAGAAAGTAGAAGGCTCCA+TGG - chr3_2:57108078-57108097 None:intergenic 45.0%
ATGGAGCCTTCTACTTTCTC+TGG + chr3_2:57108077-57108096 Msa0412990:CDS 45.0%
CGCCTGATGGAAAATTAGAC+TGG + chr3_2:57108108-57108127 Msa0412990:CDS 45.0%
! AAATTAGACTGGTCCATCCG+CGG + chr3_2:57108119-57108138 Msa0412990:CDS 45.0%
TTCGGCTTTCGAAACAGAAG+TGG + chr3_2:57108176-57108195 Msa0412990:CDS 45.0%
CAGAAGTGGCACTTCATCAA+TGG + chr3_2:57108190-57108209 Msa0412990:CDS 45.0%
! ACACAATCTAAGACCTCCCT+AGG - chr3_2:57108508-57108527 None:intergenic 45.0%
GGTGCAGCTTACCTTATGAT+GGG - chr3_2:57109004-57109023 None:intergenic 45.0%
AGGTGCAGCTTACCTTATGA+TGG - chr3_2:57109005-57109024 None:intergenic 45.0%
ACATTCAAAGTGCGGCATTG+CGG + chr3_2:57110158-57110177 Msa0412990:CDS 45.0%
ATGTCCCTTTGCTCATCATG+GGG + chr3_2:57110202-57110221 Msa0412990:CDS 45.0%
CTTTCCCCATGATGAGCAAA+GGG - chr3_2:57110209-57110228 None:intergenic 45.0%
!! AGCGTTGTTCTGTATCGACT+AGG - chr3_2:57110362-57110381 None:intergenic 45.0%
CTTCTTTGCTCACAAACCTG+AGG + chr3_2:57110418-57110437 Msa0412990:CDS 45.0%
ATGTGAAGGCAAAGCAGAAC+TGG - chr3_2:57110468-57110487 None:intergenic 45.0%
ATGGCCCAAAATAGCCTTCA+AGG - chr3_2:57110874-57110893 None:intergenic 45.0%
CAAGATATGATGCCCTTTCG+AGG + chr3_2:57111023-57111042 Msa0412990:CDS 45.0%
CTTTATCGAGAGCAACAGCA+TGG + chr3_2:57111057-57111076 Msa0412990:CDS 45.0%
AATGCAACTGAGGTAGCATC+TGG - chr3_2:57111097-57111116 None:intergenic 45.0%
AGATGCTACCTCAGTTGCAT+TGG + chr3_2:57111096-57111115 Msa0412990:CDS 45.0%
GAGGGTTGGATCGAAGGAAA+TGG + chr3_2:57106726-57106745 Msa0412990:intron 50.0%
TGAAGAGAGGACACCTCTCA+TGG + chr3_2:57106753-57106772 Msa0412990:CDS 50.0%
AGAGACAGCACAACGAAGAG+CGG - chr3_2:57106872-57106891 None:intergenic 50.0%
! GTGCAGCGACTTGTTTGTCT+CGG + chr3_2:57106978-57106997 Msa0412990:intron 50.0%
CGGGTGAACAAATGGACACT+CGG - chr3_2:57107274-57107293 None:intergenic 50.0%
CGAGTGTCCATTTGTTCACC+CGG + chr3_2:57107272-57107291 Msa0412990:CDS 50.0%
GAGTGTCCATTTGTTCACCC+GGG + chr3_2:57107273-57107292 Msa0412990:CDS 50.0%
AGTGTCCATTTGTTCACCCG+GGG + chr3_2:57107274-57107293 Msa0412990:CDS 50.0%
! TTTTCCCCCGGGTGAACAAA+TGG - chr3_2:57107282-57107301 None:intergenic 50.0%
ATGATCCCTTCCGAAACTCG+GGG - chr3_2:57107353-57107372 None:intergenic 50.0%
CATGATCCCTTCCGAAACTC+GGG - chr3_2:57107354-57107373 None:intergenic 50.0%
CGGAAGGGATCATGTAGCAA+AGG + chr3_2:57107360-57107379 Msa0412990:CDS 50.0%
AGGATGAAACCGGATGTACC+AGG + chr3_2:57107457-57107476 Msa0412990:intron 50.0%
TGAAACCGGATGTACCAGGA+AGG + chr3_2:57107461-57107480 Msa0412990:intron 50.0%
GCAAACCTTCCTGGTACATC+CGG - chr3_2:57107469-57107488 None:intergenic 50.0%
TACAATGGTCGAAGCTCCTC+TGG - chr3_2:57107507-57107526 None:intergenic 50.0%
GATGGAGTCAAAGGTGGTGT+TGG - chr3_2:57107642-57107661 None:intergenic 50.0%
CTGAATCTGAGTCTGCCACA+TGG - chr3_2:57107682-57107701 None:intergenic 50.0%
TTCTCGGCATCTGAAGGGTT+GGG - chr3_2:57107719-57107738 None:intergenic 50.0%
TTTCTCGGCATCTGAAGGGT+TGG - chr3_2:57107720-57107739 None:intergenic 50.0%
ATGGCAACTGAGGTAGCAGA+AGG - chr3_2:57108059-57108078 None:intergenic 50.0%
TTCTGCTACCTCAGTTGCCA+TGG + chr3_2:57108058-57108077 Msa0412990:CDS 50.0%
AGCCTTCTACTTTCTCTGGC+TGG + chr3_2:57108081-57108100 Msa0412990:CDS 50.0%
GCCTTCTACTTTCTCTGGCT+GGG + chr3_2:57108082-57108101 Msa0412990:CDS 50.0%
CCTTCTACTTTCTCTGGCTG+GGG + chr3_2:57108083-57108102 Msa0412990:CDS 50.0%
TGCGAAGGATGCTCCAACAA+TGG + chr3_2:57108277-57108296 Msa0412990:CDS 50.0%
!! ATAAAGACTCTAGAGCGCGG+AGG - chr3_2:57108436-57108455 None:intergenic 50.0%
! TCTTCACCAGATTTCGGTGC+AGG + chr3_2:57109298-57109317 Msa0412990:intron 50.0%
AAGGAACCTGCACCGAAATC+TGG - chr3_2:57109307-57109326 None:intergenic 50.0%
CAAGATTGCCTTAAGGGAGC+AGG + chr3_2:57110089-57110108 Msa0412990:CDS 50.0%
GCTTTCCCCATGATGAGCAA+AGG - chr3_2:57110210-57110229 None:intergenic 50.0%
GCACATGGTGTTCTTGAGTC+CGG + chr3_2:57110329-57110348 Msa0412990:CDS 50.0%
CACATGGTGTTCTTGAGTCC+GGG + chr3_2:57110330-57110349 Msa0412990:CDS 50.0%
GATATTGCAGACGGTGTCCA+AGG - chr3_2:57110557-57110576 None:intergenic 50.0%
ATCCTGCAGGAAGAACCATG+TGG + chr3_2:57110579-57110598 Msa0412990:CDS 50.0%
GTACGATTCTGAGTCGGAGT+CGG - chr3_2:57110605-57110624 None:intergenic 50.0%
AATCTGTTGCTCGGCATCTG+AGG - chr3_2:57110641-57110660 None:intergenic 50.0%
AATCTGTTGCTCGGCATCTG+AGG - chr3_2:57110641-57110660 None:intergenic 50.0%
GCTGTCGGAGATTGTATCGA+TGG - chr3_2:57110893-57110912 None:intergenic 50.0%
ACAATCTCCGACAGCAATGC+AGG + chr3_2:57110898-57110917 Msa0412990:CDS 50.0%
CAATCTCCGACAGCAATGCA+GGG + chr3_2:57110899-57110918 Msa0412990:CDS 50.0%
AATCTCCGACAGCAATGCAG+GGG + chr3_2:57110900-57110919 Msa0412990:CDS 50.0%
TGATACCCCTGCATTGCTGT+CGG - chr3_2:57110908-57110927 None:intergenic 50.0%
TGAGGTAGCATCTGGAAGCT+TGG - chr3_2:57111089-57111108 None:intergenic 50.0%
TGAAGGCTCCAATGCAACTG+AGG - chr3_2:57111107-57111126 None:intergenic 50.0%
GAGCCTTCAACTTCCTTGTC+CGG + chr3_2:57111118-57111137 Msa0412990:CDS 50.0%
CAACCGGACAAGGAAGTTGA+AGG - chr3_2:57111124-57111143 None:intergenic 50.0%
CTTCAACTTCCTTGTCCGGT+TGG + chr3_2:57111122-57111141 Msa0412990:CDS 50.0%
TGGAAGGAGGGTTGGATCGA+AGG + chr3_2:57106720-57106739 Msa0412990:intron 55.0%
GCTCTTCGTTGTGCTGTCTC+TGG + chr3_2:57106871-57106890 Msa0412990:CDS 55.0%
! ATGTTCTGCTGCTTCTGCCG+AGG + chr3_2:57106894-57106913 Msa0412990:CDS 55.0%
GTGGAGCAGCAACACGATGT+AGG + chr3_2:57107108-57107127 Msa0412990:CDS 55.0%
GTGTCCATTTGTTCACCCGG+GGG + chr3_2:57107275-57107294 Msa0412990:CDS 55.0%
GGCGAAGATGGAGTCAAAGG+TGG - chr3_2:57107648-57107667 None:intergenic 55.0%
GCAGGCGAAGATGGAGTCAA+AGG - chr3_2:57107651-57107670 None:intergenic 55.0%
ACTCCATCTTCGCCTGCTAC+TGG + chr3_2:57107654-57107673 Msa0412990:CDS 55.0%
GTTCCAGTAGCAGGCGAAGA+TGG - chr3_2:57107660-57107679 None:intergenic 55.0%
TGCCACATGGTTCCAGTAGC+AGG - chr3_2:57107669-57107688 None:intergenic 55.0%
AGAAGGCTCCATGGCAACTG+AGG - chr3_2:57108069-57108088 None:intergenic 55.0%
CCCCAGCCAGAGAAAGTAGA+AGG - chr3_2:57108086-57108105 None:intergenic 55.0%
ATTAAGCTCATCGCCGCGGA+TGG - chr3_2:57108135-57108154 None:intergenic 55.0%
ACAGAACTGCGTCGGGACTA+TGG - chr3_2:57108340-57108359 None:intergenic 55.0%
GGCAAAGACAGAACTGCGTC+GGG - chr3_2:57108347-57108366 None:intergenic 55.0%
CGGCAAAGACAGAACTGCGT+CGG - chr3_2:57108348-57108367 None:intergenic 55.0%
CGACGCAGTTCTGTCTTTGC+CGG + chr3_2:57108346-57108365 Msa0412990:CDS 55.0%
GACGCAGTTCTGTCTTTGCC+GGG + chr3_2:57108347-57108366 Msa0412990:CDS 55.0%
ACGCAGTTCTGTCTTTGCCG+GGG + chr3_2:57108348-57108367 Msa0412990:CDS 55.0%
AGGTGACTAGTGCAGCAGCT+TGG + chr3_2:57109180-57109199 Msa0412990:intron 55.0%
TGACTAGTGCAGCAGCTTGG+TGG + chr3_2:57109183-57109202 Msa0412990:intron 55.0%
GACTAGTGCAGCAGCTTGGT+GGG + chr3_2:57109184-57109203 Msa0412990:intron 55.0%
!! GTATCGACTAGGATGCAGCC+CGG - chr3_2:57110351-57110370 None:intergenic 55.0%
TTCAACGGGCGAAGTTCCTC+AGG - chr3_2:57110437-57110456 None:intergenic 55.0%
ATTGCAGACGGTGTCCAAGG+CGG - chr3_2:57110554-57110573 None:intergenic 55.0%
! TGCTCGGCATCTGAGGTGTA+GGG - chr3_2:57110634-57110653 None:intergenic 55.0%
! TTGCTCGGCATCTGAGGTGT+AGG - chr3_2:57110635-57110654 None:intergenic 55.0%
ATCCTGCAGGAAGAGCCATG+TGG + chr3_2:57110669-57110688 Msa0412990:CDS 55.0%
! TGCTCGGCATCTGAGGTGTA+GGG - chr3_2:57110634-57110653 None:intergenic 55.0%
! TTGCTCGGCATCTGAGGTGT+AGG - chr3_2:57110635-57110654 None:intergenic 55.0%
GAAGGGTCAAGTAGGCTTGC+TGG + chr3_2:57110833-57110852 Msa0412990:CDS 55.0%
!! GTTCTGGCTCTGCCTCGAAA+GGG - chr3_2:57111038-57111057 None:intergenic 55.0%
!! AGTTCTGGCTCTGCCTCGAA+AGG - chr3_2:57111039-57111058 None:intergenic 55.0%
ACCGAGTGTGCGGCACAGAT+AGG + chr3_2:57106842-57106861 Msa0412990:CDS 60.0%
CCCTATCTGTGCCGCACACT+CGG - chr3_2:57106846-57106865 None:intergenic 60.0%
CCGAGTGTGCGGCACAGATA+GGG + chr3_2:57106843-57106862 Msa0412990:CDS 60.0%
TTCACCCGGGGGAAAACGCA+AGG + chr3_2:57107286-57107305 Msa0412990:CDS 60.0%
GTGTCCCTTGCCCCGAGTTT+CGG + chr3_2:57107340-57107359 Msa0412990:CDS 60.0%
CCTTCCGAAACTCGGGGCAA+GGG - chr3_2:57107347-57107366 None:intergenic 60.0%
CCTTGCCCCGAGTTTCGGAA+GGG + chr3_2:57107345-57107364 Msa0412990:CDS 60.0%
CGCCTGCTACTGGAACCATG+TGG + chr3_2:57107664-57107683 Msa0412990:CDS 60.0%
TGCCTTCATCGATGCCGCCT+TGG + chr3_2:57110537-57110556 Msa0412990:CDS 60.0%
!! GTCCAAGGCGGCATCGATGA+AGG - chr3_2:57110542-57110561 None:intergenic 60.0%
GGCCACATGGTTCTTCCTGC+AGG - chr3_2:57110584-57110603 None:intergenic 60.0%
GACCACATGGCTCTTCCTGC+AGG - chr3_2:57110674-57110693 None:intergenic 60.0%
CTGAGTCGGAGTCGACCACA+TGG - chr3_2:57110687-57110706 None:intergenic 60.0%
!! TCTATCACGGGAGCGCCAAC+CGG - chr3_2:57111140-57111159 None:intergenic 60.0%
!! ACGCAAGGCGCCGTGATCCA+AGG + chr3_2:57107301-57107320 Msa0412990:CDS 65.0%
CCCTTGCCCCGAGTTTCGGA+AGG + chr3_2:57107344-57107363 Msa0412990:CDS 65.0%
CCCTTCCGAAACTCGGGGCA+AGG - chr3_2:57107348-57107367 None:intergenic 65.0%
CTGAGTCGGAGTCGGCCACA+TGG - chr3_2:57110597-57110616 None:intergenic 65.0%
! GGCGCCTTGCGTTTTCCCCC+GGG - chr3_2:57107293-57107312 None:intergenic 70.0%
! CGGCGCCTTGCGTTTTCCCC+CGG - chr3_2:57107294-57107313 None:intergenic 70.0%
TCTGGCTGGGGCTCGCCTGA+TGG + chr3_2:57108095-57108114 Msa0412990:CDS 70.0%
!! ACGGGAGCGCCAACCGGACA+AGG - chr3_2:57111134-57111153 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 57105975 57111288 57105975 ID=Msa0412990;Name=Msa0412990
chr3_2 mRNA 57105975 57111288 57105975 ID=Msa0412990-mRNA-1;Parent=Msa0412990;Name=Msa0412990-mRNA-1;_AED=0.22;_eAED=0.29;_QI=62|0|0|0.87|0|0|8|0|1002
chr3_2 exon 57105975 57105982 57105975 ID=Msa0412990-mRNA-1:exon:11655;Parent=Msa0412990-mRNA-1
chr3_2 exon 57106053 57106104 57106053 ID=Msa0412990-mRNA-1:exon:11656;Parent=Msa0412990-mRNA-1
chr3_2 exon 57106530 57106729 57106530 ID=Msa0412990-mRNA-1:exon:11657;Parent=Msa0412990-mRNA-1
chr3_2 exon 57106742 57106989 57106742 ID=Msa0412990-mRNA-1:exon:11658;Parent=Msa0412990-mRNA-1
chr3_2 exon 57107011 57107220 57107011 ID=Msa0412990-mRNA-1:exon:11659;Parent=Msa0412990-mRNA-1
chr3_2 exon 57107240 57107471 57107240 ID=Msa0412990-mRNA-1:exon:11660;Parent=Msa0412990-mRNA-1
chr3_2 exon 57107483 57108397 57107483 ID=Msa0412990-mRNA-1:exon:11661;Parent=Msa0412990-mRNA-1
chr3_2 exon 57110086 57111288 57110086 ID=Msa0412990-mRNA-1:exon:11662;Parent=Msa0412990-mRNA-1
chr3_2 five_prime_UTR 57105975 57105982 57105975 ID=Msa0412990-mRNA-1:five_prime_utr;Parent=Msa0412990-mRNA-1
chr3_2 five_prime_UTR 57106053 57106104 57106053 ID=Msa0412990-mRNA-1:five_prime_utr;Parent=Msa0412990-mRNA-1
chr3_2 five_prime_UTR 57106530 57106531 57106530 ID=Msa0412990-mRNA-1:five_prime_utr;Parent=Msa0412990-mRNA-1
chr3_2 CDS 57106532 57106729 57106532 ID=Msa0412990-mRNA-1:cds;Parent=Msa0412990-mRNA-1
chr3_2 CDS 57106742 57106989 57106742 ID=Msa0412990-mRNA-1:cds;Parent=Msa0412990-mRNA-1
chr3_2 CDS 57107011 57107220 57107011 ID=Msa0412990-mRNA-1:cds;Parent=Msa0412990-mRNA-1
chr3_2 CDS 57107240 57107471 57107240 ID=Msa0412990-mRNA-1:cds;Parent=Msa0412990-mRNA-1
chr3_2 CDS 57107483 57108397 57107483 ID=Msa0412990-mRNA-1:cds;Parent=Msa0412990-mRNA-1
chr3_2 CDS 57110086 57111288 57110086 ID=Msa0412990-mRNA-1:cds;Parent=Msa0412990-mRNA-1
Gene Sequence

>Msa0412990

ATGTGCAACGGTGCGAATAGAAAACCTTGTCAAACTGGTTTGATTAAGGAAAATGAATATGGAAGACAAGAAGAACTTCATCATAAGATTTCAGCTTTGCTTGAGTTTTCAGCCGAAGATGACGTAATGGCATTCACAGATGCTGTTGAAAAAGGTGAACATGAAGTCGATGAGGTAGGATTATGGTATGGAAGGAGGGAAATGGGATATGAAGAGAGGACACCTCTCATGGTTGCTGCCTTATTTGGAAGCAAGGGTGTGTTGTCTTATATTCTCGGAACCGGTCGTGTTGATGTTAACCGAGTGTGCGGCACAGATAGGGCTACCGCTCTTCGTTGTGCTGTCTCTGGATGTTCTGCTGCTTCTGCCGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTTCCATTGATGTGAATGATAACTGGTGCAGCGACTTTATCTTCGGTTCAAGGAATAGGATACTACAACCCATACTAGAAGGCGTAGATGATGTTGATGATGATGATTTCCTTAAACAAGTAGGTTTTCAATTGGTGGAGCAGCAACACGATGTAGGTACACCTCGAACTGAGAAGAAAGATTATCCGATTGATCCATCCCTACCTGACATAAACAATGAGATATATAGTACAGATGAATTTAGAATCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCATTTGTTCACCCGGGGGAAAACGCAAGGCGCCGTGATCCAAGGAAATATCATTACACATGTGTCCCTTGCCCCGAGTTTCGGAAGGGATCATGTAGCAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGCTGGCTTCATCCTGCTCAATATAGAACAAGGCTTTGCAAGGATGAAACCGGATGTTTGCTTCTTTGCTCACAAACCAGAGGAGCTTCGACCATTGTATGTTTCTACGGGTTCTGCTATGCTTTCACCTACATCATATTCAAATTCACCTAGTGCTTCTTCAATGGATTCTTTCACATTGAGTTCTCCGTCTTCTTCGATACAATCTGCACCAACACCACCTTTGACTCCATCTTCGCCTGCTACTGGAACCATGTGGCAGACTCAGATTCAGCTTCATGCTGCAGTCCCAACCCTTCAGATGCCGAGAAACAGATTGAAAACTGCACTGAATGCTGAAAATAACGTAGAGTTTCTCGAACTTGAGAATCGCCTCAGTCTTTCATCTCCTTCAAATAGGCTTTCAAGAGTGAATCCTACTAACCTTAAAAACTTTTTCGGGTCATCGATACAATCTCCGACCATAATGCAGATGCATCAGAACGCAAACCAGCAACTTTGGGGCTATCATTCTGATCTTACCAATTCAAATGTTATTGGATCACCACAATTCAGAGGAGATGCCTTGTCAAAGCAAAGCGAGATCTTTATTGATCACAGTAGCATGGCGAGCTTTAGTTCTGATCTTCCTTCTGCTACCTCAGTTGCCATGGAGCCTTCTACTTTCTCTGGCTGGGGCTCGCCTGATGGAAAATTAGACTGGTCCATCCGCGGCGATGAGCTTAATAAAATGAGGAAATCTTATTCTTTCGGCTTTCGAAACAGAAGTGGCACTTCATCAATGGCTTCTTCATTAAACGTCGACGATCCAGATGTATTTTTAAGGCATGAATCTTGGGTAAATTCTCTTGCGAAGGATGCTCCAACAATGGAATTTGATCAATATTGTGTTGAAGATCAACTGCAATGCCATAGTCCCGACGCAGTTCTGTCTTTGCCGGGGCAATTGTACATAGAACATGAGCAGATGAAACAAGATTGCCTTAAGGGAGCAGGTTTTGAAATGGAGAAGCAGCAACAAGATGATGAATTTATGATGTATACATTCAAAGTGCGGCATTGCGGTTATGTTCATGATTGGAAAAAATGTCCCTTTGCTCATCATGGGGAAAGCATAAAACGCCGTGATCCGAAGCAATATAATTACAGATGTGCCCATTGTAATGAATTTCAGAAATATAGATCATGCAGTAAAGGGGATGAATGTCAATATGCACATGGTGTTCTTGAGTCCGGGCTGCATCCTAGTCGATACAGAACAACGCTTTGCAATAATGGAACTACATGCACAAGAGAAGTTTGCTTCTTTGCTCACAAACCTGAGGAACTTCGCCCGTTGAATGCTAGTACCAGTTCTGCTTTGCCTTCACATACATTATATTCAAATTCACCAAGTGCTTCTGCAATGTATACTTTCACATTGCCTTCATCGATGCCGCCTTGGACACCGTCTGCAATATCATATCCTGCAGGAAGAACCATGTGGCCGACTCCGACTCAGAATCGTACTACAGTCCCTACACCTCAGATGCCGAGCAACAGATTGATATCATATCCTGCAGGAAGAGCCATGTGGTCGACTCCGACTCAGATTCGTACTACAGTCCCTACACCTCAGATGCCGAGCAACAGATTGAATACTGCATTGAATGCTAGAGATAATACTCACCTGGACATGAAATTTTTCGAATATCACAATATGCCGAATCCAATGATAGAAGGGTCAAGTAGGCTTGCTGGAGTGAATCCTACTAACCTTGAAGGCTATTTTGGGCCATCGATACAATCTCCGACAGCAATGCAGGGGTATCAGAATGTGAACCAACAACTTCAGATATATCCTTCTCACCTTACCAATTCTAATGTGGTTAGATCACAACAGTTCAGGGGTGATCCATTTTTTAATTCAAGATATGATGCCCTTTCGAGGCAGAGCCAGAACTTTATCGAGAGCAACAGCATGGCAAGCTCCAAGCTTCCAGATGCTACCTCAGTTGCATTGGAGCCTTCAACTTCCTTGTCCGGTTGGCGCTCCCGTGATAGAAAATTAGAATTGGGTGATACTAGCAACACTTCAACAATGGCTGCTACATCAAATGTTGATGATCAGGATGTATTATTAAGATATGAAGGTATGGTTAATGAACTTGTGAAGGAAGATGGTCCAACATTG
Protein sequence

>Msa0412990

MCNGANRKPCQTGLIKENEYGRQEELHHKISALLEFSAEDDVMAFTDAVEKGEHEVDEVGLWYGRREMGYEERTPLMVAALFGSKGVLSYILGTGRVDVNRVCGTDRATALRCAVSGCSAASAEVIKLLLDASADVSSIDVNDNWCSDFIFGSRNRILQPILEGVDDVDDDDFLKQVGFQLVEQQHDVGTPRTEKKDYPIDPSLPDINNEIYSTDEFRILVQGLILMIGPSVHLFTRGKTQGAVIQGNIITHVSLAPSFGRDHVAKGMLVNMHMVFLNAGFILLNIEQGFARMKPDVCFFAHKPEELRPLYVSTGSAMLSPTSYSNSPSASSMDSFTLSSPSSSIQSAPTPPLTPSSPATGTMWQTQIQLHAAVPTLQMPRNRLKTALNAENNVEFLELENRLSLSSPSNRLSRVNPTNLKNFFGSSIQSPTIMQMHQNANQQLWGYHSDLTNSNVIGSPQFRGDALSKQSEIFIDHSSMASFSSDLPSATSVAMEPSTFSGWGSPDGKLDWSIRGDELNKMRKSYSFGFRNRSGTSSMASSLNVDDPDVFLRHESWVNSLAKDAPTMEFDQYCVEDQLQCHSPDAVLSLPGQLYIEHEQMKQDCLKGAGFEMEKQQQDDEFMMYTFKVRHCGYVHDWKKCPFAHHGESIKRRDPKQYNYRCAHCNEFQKYRSCSKGDECQYAHGVLESGLHPSRYRTTLCNNGTTCTREVCFFAHKPEELRPLNASTSSALPSHTLYSNSPSASAMYTFTLPSSMPPWTPSAISYPAGRTMWPTPTQNRTTVPTPQMPSNRLISYPAGRAMWSTPTQIRTTVPTPQMPSNRLNTALNARDNTHLDMKFFEYHNMPNPMIEGSSRLAGVNPTNLEGYFGPSIQSPTAMQGYQNVNQQLQIYPSHLTNSNVVRSQQFRGDPFFNSRYDALSRQSQNFIESNSMASSKLPDATSVALEPSTSLSGWRSRDRKLELGDTSNTSTMAATSNVDDQDVLLRYEGMVNELVKEDGPTL