AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0413340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413340 MtrunA17_Chr3g0105711 88.419 544 59 4 1 542 1 542 0.0 928
Msa0413340 MtrunA17_Chr3g0136081 49.217 575 194 14 7 541 2 518 1.34e-163 475
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413340 AT5G16100.2 27.547 265 155 7 299 526 176 440 5.45e-23 102

Find 107 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAGTCCATGGTAATTT+TGG 0.212819 3_2:-57761262 None:intergenic
GGGTCCATTATTGCTATTAA+TGG 0.250205 3_2:-57761237 None:intergenic
ATTGCTATTAATGGACAAAT+TGG 0.250376 3_2:-57761228 None:intergenic
CATGGACATGGTAGCAATAT+TGG 0.250557 3_2:+57761449 Msa0413340:CDS
CAAAATAATAATGTTTCATT+TGG 0.253731 3_2:+57761803 Msa0413340:CDS
TTGTCCATTAATAGCAATAA+TGG 0.260366 3_2:+57761233 Msa0413340:CDS
TGGATTGCGGTTGCTCAAAT+TGG 0.290960 3_2:-57761204 None:intergenic
AGACGAATCATTTACTCTAA+TGG 0.306498 3_2:+57761953 Msa0413340:CDS
ATTGTTGGGCCTCCATTAAC+AGG 0.321028 3_2:-57762138 None:intergenic
TATGAAAATCTTGAGATTCA+TGG 0.321881 3_2:+57762075 Msa0413340:CDS
CAAGAGCAAGTTGGTGAGAT+TGG 0.322818 3_2:+57762989 Msa0413340:CDS
AACGTTGCACCTTCGATACT+TGG 0.325070 3_2:-57761056 None:intergenic
CGCCATGTGACACCTGTTAA+TGG 0.325291 3_2:+57762126 Msa0413340:CDS
TTGGATTGATGATATTAATA+TGG 0.329852 3_2:+57762413 Msa0413340:CDS
AATGACCATGGCATTCAATA+TGG 0.336602 3_2:+57761509 Msa0413340:CDS
CACACTACTGCTGCTGATAA+TGG 0.341115 3_2:-57763637 None:intergenic
CTCTTTGCACCGGATATGAT+TGG 0.357597 3_2:+57762394 Msa0413340:CDS
CTTGAGATTCATGGAAGCTT+GGG 0.357672 3_2:+57762084 Msa0413340:CDS
CATGCTTACAGATGAGATAA+TGG 0.399747 3_2:+57762958 Msa0413340:intron
GATATTAAATTGTAATTGAA+TGG 0.400636 3_2:-57761623 None:intergenic
TGATGAAATAAAGAACTTCC+TGG 0.412875 3_2:+57762299 Msa0413340:CDS
CTATTAATGGACAAATTGGT+TGG 0.419381 3_2:-57761224 None:intergenic
AGCAATACTTGAAAATCAAT+TGG 0.419584 3_2:+57763484 Msa0413340:CDS
CGATTACTTTCATCTACCTA+TGG 0.438638 3_2:+57763260 Msa0413340:CDS
TGGAATAAGTAACTATGAAG+TGG 0.449761 3_2:+57761823 Msa0413340:CDS
TCGATCGTTCGATCAATTGT+TGG 0.449843 3_2:-57762153 None:intergenic
CGATCGTTCGATCAATTGTT+GGG 0.451376 3_2:-57762152 None:intergenic
TGTATATATCATTTAGTGTA+GGG 0.456932 3_2:-57761130 None:intergenic
CTTCCTGGATCAGTATTGTA+TGG 0.458075 3_2:+57762314 Msa0413340:CDS
CGATTACAATTTAGTATCAC+CGG 0.467153 3_2:+57761556 Msa0413340:CDS
TCTTGAGATTCATGGAAGCT+TGG 0.468339 3_2:+57762083 Msa0413340:CDS
CACCAAAATTACCATGGACT+TGG 0.468970 3_2:+57761260 Msa0413340:CDS
AGATGTGCACAATTTACATT+GGG 0.476510 3_2:+57763228 Msa0413340:CDS
CAACAAAATTACCATGGACT+TGG 0.485409 3_2:+57761344 Msa0413340:CDS
GGAAGTTCTTTATTTCATCA+AGG 0.486733 3_2:-57762296 None:intergenic
TCAATTGGACAGGCAAGATC+CGG 0.489751 3_2:+57763499 Msa0413340:CDS
ATCATCAATCCAATCATATC+CGG 0.493113 3_2:-57762403 None:intergenic
TGTATGGAACATAATTCAGC+AGG 0.494565 3_2:+57762330 Msa0413340:CDS
CCATGGCATTCAACATGGAC+GGG 0.499629 3_2:+57761586 Msa0413340:CDS
CCATGCCCATGTTGAATACC+AGG 0.499993 3_2:-57761728 None:intergenic
GTAGAACAAAATTAAGAAGA+TGG 0.504860 3_2:+57763337 Msa0413340:CDS
AAGTGTTGGCACTTGATCAA+TGG 0.505339 3_2:+57761885 Msa0413340:CDS
CTAGCCGCTGCTTCTTCCAT+AGG 0.508372 3_2:-57763276 None:intergenic
AGAGTCCTTTCCCTTGTCGC+CGG 0.514274 3_2:-57763518 None:intergenic
ATGTATATATCATTTAGTGT+AGG 0.514577 3_2:-57761131 None:intergenic
AAGATGTGCACAATTTACAT+TGG 0.515263 3_2:+57763227 Msa0413340:CDS
AAGAAGATGGCCACACAGAA+AGG 0.518680 3_2:+57763350 Msa0413340:CDS
GATTGATGATATTAATATGG+AGG 0.518874 3_2:+57762416 Msa0413340:CDS
TACTTGAAAATCAATTGGAC+AGG 0.519249 3_2:+57763489 Msa0413340:CDS
CCAGTGGTTCAAAATCAACT+TGG 0.521275 3_2:+57761776 Msa0413340:CDS
GGAATAAGTAACTATGAAGT+GGG 0.521918 3_2:+57761824 Msa0413340:CDS
GGCATTCAACAAGGGCATGA+TGG 0.527645 3_2:+57761662 Msa0413340:CDS
ACCATGGCATTCAACATGGA+CGG 0.528445 3_2:+57761585 Msa0413340:CDS
GTTCCATACAATACTGATCC+AGG 0.531567 3_2:-57762317 None:intergenic
CACCAGAGTGTGGTTGAACA+TGG 0.539370 3_2:+57761431 Msa0413340:CDS
GATACTAAATTGTAATCGAA+TGG 0.539633 3_2:-57761551 None:intergenic
GCGACATAATTCAACGCAGT+TGG 0.549096 3_2:-57763596 None:intergenic
AAGATCCGGCGACAAGGGAA+AGG 0.552910 3_2:+57763513 Msa0413340:CDS
CTCCATTAACAGGTGTCACA+TGG 0.555997 3_2:-57762128 None:intergenic
CCCGTCCATGTTGAATGCCA+TGG 0.556371 3_2:-57761586 None:intergenic
GACTTGGAATACTTCAACGA+GGG 0.562322 3_2:+57761276 Msa0413340:CDS
TCCGTCCATATTGAATGCCA+TGG 0.565290 3_2:-57761514 None:intergenic
CAGGCAAGATCCGGCGACAA+GGG 0.569973 3_2:+57763508 Msa0413340:CDS
AATGACCATGGCATTCAACA+AGG 0.572063 3_2:+57761653 Msa0413340:CDS
TACATGAATAACAATAACAA+TGG 0.572167 3_2:+57761149 Msa0413340:CDS
ATGCCATGGTCATTCTGTTG+TGG 0.572180 3_2:-57761500 None:intergenic
AATGACCATGGCATTCAACA+TGG 0.573215 3_2:+57761581 Msa0413340:CDS
ATGTCACAACAAAATCATCC+TGG 0.581461 3_2:+57761710 Msa0413340:CDS
AATCATCCTGGTATTCAACA+TGG 0.583484 3_2:+57761722 Msa0413340:CDS
ATTGATGATATTAATATGGA+GGG 0.585774 3_2:+57762417 Msa0413340:CDS
GTCCATGTTCAACCACACTC+TGG 0.590094 3_2:-57761433 None:intergenic
GAGCAAGAGCAAGAGCAAGT+TGG 0.590145 3_2:+57762980 Msa0413340:CDS
TCAACAACAGACCGAAGTGT+TGG 0.597493 3_2:+57761871 Msa0413340:CDS
TTGAGATTCATGGAAGCTTG+GGG 0.597747 3_2:+57762085 Msa0413340:CDS
ACCATGGCATTCAATATGGA+CGG 0.598487 3_2:+57761513 Msa0413340:CDS
GTAGAAGTATTCCAAGTCCA+TGG 0.598550 3_2:-57761355 None:intergenic
GTTGAAGTATTCCAAGTCCA+TGG 0.599108 3_2:-57761271 None:intergenic
ACAGGCAAGATCCGGCGACA+AGG 0.599603 3_2:+57763507 Msa0413340:CDS
TTGATCAAGTGCCAACACTT+CGG 0.602511 3_2:-57761882 None:intergenic
TATTATGAGACTCTTTGCAC+CGG 0.606478 3_2:+57762384 Msa0413340:CDS
GGCATTCAACATGGACGGGG+TGG 0.611696 3_2:+57761590 Msa0413340:CDS
CATGCCCTTGTTGAATGCCA+TGG 0.617139 3_2:-57761658 None:intergenic
ATCATCCTGGTATTCAACAT+GGG 0.618918 3_2:+57761723 Msa0413340:CDS
CTATCCCAACAAAATTACCA+TGG 0.618972 3_2:+57761338 Msa0413340:CDS
CCTGGTATTCAACATGGGCA+TGG 0.619041 3_2:+57761728 Msa0413340:CDS
GGACTTGGAATACTTCTACA+AGG 0.619567 3_2:+57761359 Msa0413340:CDS
CAACAACAAAATTCTTGCAG+TGG 0.625689 3_2:+57761917 Msa0413340:CDS
CATGGCATTCAACATGGACG+GGG 0.625970 3_2:+57761587 Msa0413340:CDS
CAAGACATGATTGATGATTG+TGG 0.634370 3_2:+57763563 Msa0413340:CDS
CATGTGACACCTGTTAATGG+AGG 0.638273 3_2:+57762129 Msa0413340:CDS
TGGACAAATTGGTTGGATTG+CGG 0.639366 3_2:-57761217 None:intergenic
TCTACCTATGGAAGAAGCAG+CGG 0.639381 3_2:+57763272 Msa0413340:CDS
TGCTGCTGATAATGGTGCGG+CGG 0.640455 3_2:-57763629 None:intergenic
GGACCCCACCAAAATTACCA+TGG 0.646800 3_2:+57761254 Msa0413340:CDS
GGAATACTTCTACAAGGACA+TGG 0.662894 3_2:+57761365 Msa0413340:CDS
TACTGCTGCTGATAATGGTG+CGG 0.670583 3_2:-57763632 None:intergenic
ATGACCATGGCATTCAACAA+GGG 0.670827 3_2:+57761654 Msa0413340:CDS
GTATGGAACATAATTCAGCA+GGG 0.676056 3_2:+57762331 Msa0413340:CDS
ATGCCACAACAGAATGACCA+TGG 0.677298 3_2:+57761497 Msa0413340:CDS
GACAAGGGAAAGGACTCTAG+AGG 0.686791 3_2:+57763523 Msa0413340:CDS
ATATCACCAGAAAATGACCA+TGG 0.689696 3_2:+57761641 Msa0413340:CDS
CCAACAAAATCACCAGAGTG+TGG 0.691943 3_2:+57761421 Msa0413340:CDS
ATAAAATTACCTGCTCTGAG+AGG 0.699829 3_2:-57763030 None:intergenic
GTATCACCGGAAAATGACCA+TGG 0.713409 3_2:+57761569 Msa0413340:CDS
AGTGTGGTTGAACATGGACA+TGG 0.753622 3_2:+57761437 Msa0413340:CDS
GACATGATTGATGATTGTGG+CGG 0.760229 3_2:+57763566 Msa0413340:CDS
GGACTTGGAATACTTCAACG+AGG 0.774898 3_2:+57761275 Msa0413340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTGTTTCTTATATAT+AGG + chr3_2:57762045-57762064 Msa0413340:intron 10.0%
!! TACTCATATTGAAAAAATTT+GGG - chr3_2:57761109-57761128 None:intergenic 15.0%
!! TTACTCATATTGAAAAAATT+TGG - chr3_2:57761110-57761129 None:intergenic 15.0%
!! GATATTAAATTGTAATTGAA+TGG - chr3_2:57761626-57761645 None:intergenic 15.0%
!! CAAAATAATAATGTTTCATT+TGG + chr3_2:57761803-57761822 Msa0413340:CDS 15.0%
!! AACATATATATCAAAATAAC+TGG - chr3_2:57762026-57762045 None:intergenic 15.0%
!!! TATCATAATGATTTTGATTT+GGG + chr3_2:57762827-57762846 Msa0413340:intron 15.0%
!!! TTTTTTGTGTGTATTATTTT+TGG + chr3_2:57763382-57763401 Msa0413340:intron 15.0%
!! TGTATATATCATTTAGTGTA+GGG - chr3_2:57761133-57761152 None:intergenic 20.0%
!! ATGTATATATCATTTAGTGT+AGG - chr3_2:57761134-57761153 None:intergenic 20.0%
!! TACATGAATAACAATAACAA+TGG + chr3_2:57761149-57761168 Msa0413340:CDS 20.0%
!!! TTTCTTGTAGTGATTAATTT+TGG - chr3_2:57762002-57762021 None:intergenic 20.0%
!!! TTGGATTGATGATATTAATA+TGG + chr3_2:57762413-57762432 Msa0413340:CDS 20.0%
!!! ATTGATGATATTAATATGGA+GGG + chr3_2:57762417-57762436 Msa0413340:CDS 20.0%
!!! CTTTTAGAAATACATTTGTT+TGG + chr3_2:57762683-57762702 Msa0413340:intron 20.0%
!!! GTATCATAATGATTTTGATT+TGG + chr3_2:57762826-57762845 Msa0413340:intron 20.0%
!!! ATCATAATGATTTTGATTTG+GGG + chr3_2:57762828-57762847 Msa0413340:intron 20.0%
!! ATATTGTATGTATTGAATAG+AGG + chr3_2:57763202-57763221 Msa0413340:intron 20.0%
! ATTGAAAAAATTTGGGTCAA+TGG - chr3_2:57761102-57761121 None:intergenic 25.0%
!! ATTGGAATGATGATTTTGTT+GGG - chr3_2:57761189-57761208 None:intergenic 25.0%
!! AATTGGAATGATGATTTTGT+TGG - chr3_2:57761190-57761209 None:intergenic 25.0%
!! ATTGCTATTAATGGACAAAT+TGG - chr3_2:57761231-57761250 None:intergenic 25.0%
! TTGTCCATTAATAGCAATAA+TGG + chr3_2:57761233-57761252 Msa0413340:CDS 25.0%
! GATACTAAATTGTAATCGAA+TGG - chr3_2:57761554-57761573 None:intergenic 25.0%
! TATGAAAATCTTGAGATTCA+TGG + chr3_2:57762075-57762094 Msa0413340:CDS 25.0%
! TGTAATATTACACTAAGACT+TGG - chr3_2:57762186-57762205 None:intergenic 25.0%
!! GATTGATGATATTAATATGG+AGG + chr3_2:57762416-57762435 Msa0413340:CDS 25.0%
! AAACCTGAAAAATTATCGAT+AGG - chr3_2:57762444-57762463 None:intergenic 25.0%
!!! CTTTTAGAAATACACTTGTT+TGG + chr3_2:57762499-57762518 Msa0413340:intron 25.0%
!!! CTTTTAGAAATGCATTTGTT+TGG + chr3_2:57762591-57762610 Msa0413340:intron 25.0%
!! TTTTTAATGTTATTACGTCG+AGG + chr3_2:57762918-57762937 Msa0413340:intron 25.0%
! GTAGAACAAAATTAAGAAGA+TGG + chr3_2:57763337-57763356 Msa0413340:CDS 25.0%
! CACGTATTAAATTAGCAAAA+TGG - chr3_2:57763423-57763442 None:intergenic 25.0%
! CGTGTCTTAAAATTAAGTAT+AGG + chr3_2:57763439-57763458 Msa0413340:intron 25.0%
! AGCAATACTTGAAAATCAAT+TGG + chr3_2:57763484-57763503 Msa0413340:CDS 25.0%
!! AAAAACAATCCAAGTATCGA+AGG + chr3_2:57761047-57761066 Msa0413340:CDS 30.0%
! TTTTGTTGGGACAAATTTGT+GGG - chr3_2:57761176-57761195 None:intergenic 30.0%
! ATTTTGTTGGGACAAATTTG+TGG - chr3_2:57761177-57761196 None:intergenic 30.0%
! CTATTAATGGACAAATTGGT+TGG - chr3_2:57761227-57761246 None:intergenic 30.0%
! AAGTCCATGGTAATTTTGTT+GGG - chr3_2:57761345-57761364 None:intergenic 30.0%
CGATTACAATTTAGTATCAC+CGG + chr3_2:57761556-57761575 Msa0413340:CDS 30.0%
!! ATTTTGTTGTGACATAGCAT+GGG - chr3_2:57761705-57761724 None:intergenic 30.0%
TGGAATAAGTAACTATGAAG+TGG + chr3_2:57761823-57761842 Msa0413340:CDS 30.0%
GGAATAAGTAACTATGAAGT+GGG + chr3_2:57761824-57761843 Msa0413340:CDS 30.0%
AGACGAATCATTTACTCTAA+TGG + chr3_2:57761953-57761972 Msa0413340:CDS 30.0%
!! TGTATCAGTTTTTCAGAGAA+AGG + chr3_2:57762273-57762292 Msa0413340:intron 30.0%
! GGAAGTTCTTTATTTCATCA+AGG - chr3_2:57762299-57762318 None:intergenic 30.0%
TGATGAAATAAAGAACTTCC+TGG + chr3_2:57762299-57762318 Msa0413340:CDS 30.0%
ATCATCAATCCAATCATATC+CGG - chr3_2:57762406-57762425 None:intergenic 30.0%
AAGATGTGCACAATTTACAT+TGG + chr3_2:57763227-57763246 Msa0413340:CDS 30.0%
AGATGTGCACAATTTACATT+GGG + chr3_2:57763228-57763247 Msa0413340:CDS 30.0%
! AATACTTTTACCTTTCTGTG+TGG - chr3_2:57763363-57763382 None:intergenic 30.0%
! TATAGGTGAAATGTCTTTTG+AGG + chr3_2:57763456-57763475 Msa0413340:intron 30.0%
TACTTGAAAATCAATTGGAC+AGG + chr3_2:57763489-57763508 Msa0413340:CDS 30.0%
! GGGTCCATTATTGCTATTAA+TGG - chr3_2:57761240-57761259 None:intergenic 35.0%
!! AAGTCCATGGTAATTTTGGT+GGG - chr3_2:57761261-57761280 None:intergenic 35.0%
! TTCCAAGTCCATGGTAATTT+TGG - chr3_2:57761265-57761284 None:intergenic 35.0%
!!! ATTTTGTTGGGATAGTGGAT+TGG - chr3_2:57761333-57761352 None:intergenic 35.0%
! TGGTAATTTTGTTGGGATAG+TGG - chr3_2:57761338-57761357 None:intergenic 35.0%
CTATCCCAACAAAATTACCA+TGG + chr3_2:57761338-57761357 Msa0413340:CDS 35.0%
! CAAGTCCATGGTAATTTTGT+TGG - chr3_2:57761346-57761365 None:intergenic 35.0%
CAACAAAATTACCATGGACT+TGG + chr3_2:57761344-57761363 Msa0413340:CDS 35.0%
AATGACCATGGCATTCAATA+TGG + chr3_2:57761509-57761528 Msa0413340:CDS 35.0%
ATATCACCAGAAAATGACCA+TGG + chr3_2:57761641-57761660 Msa0413340:CDS 35.0%
!! GATTTTGTTGTGACATAGCA+TGG - chr3_2:57761706-57761725 None:intergenic 35.0%
ATGTCACAACAAAATCATCC+TGG + chr3_2:57761710-57761729 Msa0413340:CDS 35.0%
AATCATCCTGGTATTCAACA+TGG + chr3_2:57761722-57761741 Msa0413340:CDS 35.0%
ATCATCCTGGTATTCAACAT+GGG + chr3_2:57761723-57761742 Msa0413340:CDS 35.0%
! TGAAACATTTTCTCTTCCAG+TGG + chr3_2:57761760-57761779 Msa0413340:CDS 35.0%
!!! GAATTTTGTTGTTGTTCGAG+TGG - chr3_2:57761911-57761930 None:intergenic 35.0%
CAACAACAAAATTCTTGCAG+TGG + chr3_2:57761917-57761936 Msa0413340:CDS 35.0%
TGTATGGAACATAATTCAGC+AGG + chr3_2:57762330-57762349 Msa0413340:CDS 35.0%
GTATGGAACATAATTCAGCA+GGG + chr3_2:57762331-57762350 Msa0413340:CDS 35.0%
TATTATGAGACTCTTTGCAC+CGG + chr3_2:57762384-57762403 Msa0413340:CDS 35.0%
! GGTCCTATCGATAATTTTTC+AGG + chr3_2:57762438-57762457 Msa0413340:CDS 35.0%
GTTTGTCTTCGAAATCATGA+AGG + chr3_2:57762460-57762479 Msa0413340:intron 35.0%
!! ACGAAAGTACCAGAAATACT+CGG - chr3_2:57762860-57762879 None:intergenic 35.0%
CATGCTTACAGATGAGATAA+TGG + chr3_2:57762958-57762977 Msa0413340:intron 35.0%
AGATTGGAACACCTGAAAAA+AGG + chr3_2:57763005-57763024 Msa0413340:CDS 35.0%
! ATAAAATTACCTGCTCTGAG+AGG - chr3_2:57763033-57763052 None:intergenic 35.0%
TTGAACAATATATACTCGCG+AGG + chr3_2:57763067-57763086 Msa0413340:intron 35.0%
CGATTACTTTCATCTACCTA+TGG + chr3_2:57763260-57763279 Msa0413340:CDS 35.0%
! CAAGACATGATTGATGATTG+TGG + chr3_2:57763563-57763582 Msa0413340:CDS 35.0%
TGGACAAATTGGTTGGATTG+CGG - chr3_2:57761220-57761239 None:intergenic 40.0%
!! AGTCCATGGTAATTTTGGTG+GGG - chr3_2:57761260-57761279 None:intergenic 40.0%
! CAAGTCCATGGTAATTTTGG+TGG - chr3_2:57761262-57761281 None:intergenic 40.0%
CACCAAAATTACCATGGACT+TGG + chr3_2:57761260-57761279 Msa0413340:CDS 40.0%
! GTTGAAGTATTCCAAGTCCA+TGG - chr3_2:57761274-57761293 None:intergenic 40.0%
GACTTGGAATACTTCAACGA+GGG + chr3_2:57761276-57761295 Msa0413340:CDS 40.0%
!! GTAGAAGTATTCCAAGTCCA+TGG - chr3_2:57761358-57761377 None:intergenic 40.0%
GGACTTGGAATACTTCTACA+AGG + chr3_2:57761359-57761378 Msa0413340:CDS 40.0%
GGAATACTTCTACAAGGACA+TGG + chr3_2:57761365-57761384 Msa0413340:CDS 40.0%
! CACACTCTGGTGATTTTGTT+GGG - chr3_2:57761423-57761442 None:intergenic 40.0%
CATGGACATGGTAGCAATAT+TGG + chr3_2:57761449-57761468 Msa0413340:CDS 40.0%
ACCATGGCATTCAATATGGA+CGG + chr3_2:57761513-57761532 Msa0413340:CDS 40.0%
!! TGAATGCCATGGTCATTTTC+CGG - chr3_2:57761578-57761597 None:intergenic 40.0%
AATGACCATGGCATTCAACA+TGG + chr3_2:57761581-57761600 Msa0413340:CDS 40.0%
!! TGAATGCCATGGTCATTTTC+TGG - chr3_2:57761578-57761597 None:intergenic 40.0%
AATGACCATGGCATTCAACA+AGG + chr3_2:57761581-57761600 Msa0413340:CDS 40.0%
ATGACCATGGCATTCAACAA+GGG + chr3_2:57761654-57761673 Msa0413340:CDS 40.0%
!!! CCAAGTTGATTTTGAACCAC+TGG - chr3_2:57761779-57761798 None:intergenic 40.0%
CCAGTGGTTCAAAATCAACT+TGG + chr3_2:57761776-57761795 Msa0413340:CDS 40.0%
TTGATCAAGTGCCAACACTT+CGG - chr3_2:57761885-57761904 None:intergenic 40.0%
!! AAGTGTTGGCACTTGATCAA+TGG + chr3_2:57761885-57761904 Msa0413340:CDS 40.0%
TCTTGAGATTCATGGAAGCT+TGG + chr3_2:57762083-57762102 Msa0413340:CDS 40.0%
CTTGAGATTCATGGAAGCTT+GGG + chr3_2:57762084-57762103 Msa0413340:CDS 40.0%
TTGAGATTCATGGAAGCTTG+GGG + chr3_2:57762085-57762104 Msa0413340:CDS 40.0%
CGATCGTTCGATCAATTGTT+GGG - chr3_2:57762155-57762174 None:intergenic 40.0%
TCGATCGTTCGATCAATTGT+TGG - chr3_2:57762156-57762175 None:intergenic 40.0%
CTTCCTGGATCAGTATTGTA+TGG + chr3_2:57762314-57762333 Msa0413340:CDS 40.0%
GTTCCATACAATACTGATCC+AGG - chr3_2:57762320-57762339 None:intergenic 40.0%
!!! TCTGAGAGGTTCCTTTTTTC+AGG - chr3_2:57763019-57763038 None:intergenic 40.0%
! AAGCGATAGACTTGTTTGCA+TGG + chr3_2:57763130-57763149 Msa0413340:intron 40.0%
! GACATGATTGATGATTGTGG+CGG + chr3_2:57763566-57763585 Msa0413340:CDS 40.0%
AACGTTGCACCTTCGATACT+TGG - chr3_2:57761059-57761078 None:intergenic 45.0%
TGGATTGCGGTTGCTCAAAT+TGG - chr3_2:57761207-57761226 None:intergenic 45.0%
GGACTTGGAATACTTCAACG+AGG + chr3_2:57761275-57761294 Msa0413340:CDS 45.0%
! CCACACTCTGGTGATTTTGT+TGG - chr3_2:57761424-57761443 None:intergenic 45.0%
CCAACAAAATCACCAGAGTG+TGG + chr3_2:57761421-57761440 Msa0413340:CDS 45.0%
AGTGTGGTTGAACATGGACA+TGG + chr3_2:57761437-57761456 Msa0413340:CDS 45.0%
ATGCCACAACAGAATGACCA+TGG + chr3_2:57761497-57761516 Msa0413340:CDS 45.0%
ATGCCATGGTCATTCTGTTG+TGG - chr3_2:57761503-57761522 None:intergenic 45.0%
TCCGTCCATATTGAATGCCA+TGG - chr3_2:57761517-57761536 None:intergenic 45.0%
GTATCACCGGAAAATGACCA+TGG + chr3_2:57761569-57761588 Msa0413340:CDS 45.0%
ACCATGGCATTCAACATGGA+CGG + chr3_2:57761585-57761604 Msa0413340:CDS 45.0%
TCAACAACAGACCGAAGTGT+TGG + chr3_2:57761871-57761890 Msa0413340:CDS 45.0%
! CTCCATTAACAGGTGTCACA+TGG - chr3_2:57762131-57762150 None:intergenic 45.0%
CATGTGACACCTGTTAATGG+AGG + chr3_2:57762129-57762148 Msa0413340:CDS 45.0%
ATTGTTGGGCCTCCATTAAC+AGG - chr3_2:57762141-57762160 None:intergenic 45.0%
CTCTTTGCACCGGATATGAT+TGG + chr3_2:57762394-57762413 Msa0413340:CDS 45.0%
!! CAAGAGCAAGTTGGTGAGAT+TGG + chr3_2:57762989-57763008 Msa0413340:CDS 45.0%
AAAAAGGAACCTCTCAGAGC+AGG + chr3_2:57763021-57763040 Msa0413340:CDS 45.0%
TCTACCTATGGAAGAAGCAG+CGG + chr3_2:57763272-57763291 Msa0413340:CDS 45.0%
AAGAAGATGGCCACACAGAA+AGG + chr3_2:57763350-57763369 Msa0413340:CDS 45.0%
TCAATTGGACAGGCAAGATC+CGG + chr3_2:57763499-57763518 Msa0413340:CDS 45.0%
GCGACATAATTCAACGCAGT+TGG - chr3_2:57763599-57763618 None:intergenic 45.0%
!! TACTGCTGCTGATAATGGTG+CGG - chr3_2:57763635-57763654 None:intergenic 45.0%
GGACCCCACCAAAATTACCA+TGG + chr3_2:57761254-57761273 Msa0413340:CDS 50.0%
CACCAGAGTGTGGTTGAACA+TGG + chr3_2:57761431-57761450 Msa0413340:CDS 50.0%
GTCCATGTTCAACCACACTC+TGG - chr3_2:57761436-57761455 None:intergenic 50.0%
CCATGGCATTCAACATGGAC+GGG + chr3_2:57761586-57761605 Msa0413340:CDS 50.0%
CATGGCATTCAACATGGACG+GGG + chr3_2:57761587-57761606 Msa0413340:CDS 50.0%
CATGCCCTTGTTGAATGCCA+TGG - chr3_2:57761661-57761680 None:intergenic 50.0%
! GGCATTCAACAAGGGCATGA+TGG + chr3_2:57761662-57761681 Msa0413340:CDS 50.0%
CCATGCCCATGTTGAATACC+AGG - chr3_2:57761731-57761750 None:intergenic 50.0%
CCTGGTATTCAACATGGGCA+TGG + chr3_2:57761728-57761747 Msa0413340:CDS 50.0%
CGCCATGTGACACCTGTTAA+TGG + chr3_2:57762126-57762145 Msa0413340:CDS 50.0%
GGGTTGTGACCGAGTATTTC+TGG + chr3_2:57762848-57762867 Msa0413340:intron 50.0%
GAGCAAGAGCAAGAGCAAGT+TGG + chr3_2:57762980-57762999 Msa0413340:CDS 50.0%
GACAAGGGAAAGGACTCTAG+AGG + chr3_2:57763523-57763542 Msa0413340:CDS 50.0%
CCCGTCCATGTTGAATGCCA+TGG - chr3_2:57761589-57761608 None:intergenic 55.0%
CTAGCCGCTGCTTCTTCCAT+AGG - chr3_2:57763279-57763298 None:intergenic 55.0%
AAGATCCGGCGACAAGGGAA+AGG + chr3_2:57763513-57763532 Msa0413340:CDS 55.0%
AGAGTCCTTTCCCTTGTCGC+CGG - chr3_2:57763521-57763540 None:intergenic 55.0%
!! TGCTGCTGATAATGGTGCGG+CGG - chr3_2:57763632-57763651 None:intergenic 55.0%
GGCATTCAACATGGACGGGG+TGG + chr3_2:57761590-57761609 Msa0413340:CDS 60.0%
ACAGGCAAGATCCGGCGACA+AGG + chr3_2:57763507-57763526 Msa0413340:CDS 60.0%
CAGGCAAGATCCGGCGACAA+GGG + chr3_2:57763508-57763527 Msa0413340:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 57761035 57763655 57761035 ID=Msa0413340;Name=Msa0413340
chr3_2 mRNA 57761035 57763655 57761035 ID=Msa0413340-mRNA-1;Parent=Msa0413340;Name=Msa0413340-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|6|0|548
chr3_2 exon 57761035 57761974 57761035 ID=Msa0413340-mRNA-1:exon:11857;Parent=Msa0413340-mRNA-1
chr3_2 exon 57762067 57762175 57762067 ID=Msa0413340-mRNA-1:exon:11858;Parent=Msa0413340-mRNA-1
chr3_2 exon 57762281 57762459 57762281 ID=Msa0413340-mRNA-1:exon:11859;Parent=Msa0413340-mRNA-1
chr3_2 exon 57762969 57763042 57762969 ID=Msa0413340-mRNA-1:exon:11860;Parent=Msa0413340-mRNA-1
chr3_2 exon 57763222 57763371 57763222 ID=Msa0413340-mRNA-1:exon:11861;Parent=Msa0413340-mRNA-1
chr3_2 exon 57763461 57763655 57763461 ID=Msa0413340-mRNA-1:exon:11862;Parent=Msa0413340-mRNA-1
chr3_2 CDS 57761035 57761974 57761035 ID=Msa0413340-mRNA-1:cds;Parent=Msa0413340-mRNA-1
chr3_2 CDS 57762067 57762175 57762067 ID=Msa0413340-mRNA-1:cds;Parent=Msa0413340-mRNA-1
chr3_2 CDS 57762281 57762459 57762281 ID=Msa0413340-mRNA-1:cds;Parent=Msa0413340-mRNA-1
chr3_2 CDS 57762969 57763042 57762969 ID=Msa0413340-mRNA-1:cds;Parent=Msa0413340-mRNA-1
chr3_2 CDS 57763222 57763371 57763222 ID=Msa0413340-mRNA-1:cds;Parent=Msa0413340-mRNA-1
chr3_2 CDS 57763461 57763655 57763461 ID=Msa0413340-mRNA-1:cds;Parent=Msa0413340-mRNA-1
Gene Sequence

>Msa0413340

ATGGCAAACAGAAAAAACAATCCAAGTATCGAAGGTGCAACGTTTAAATTTAATGATGATGATGCCATTGACCCAAATTTTTTCAATATGAGTAACCCTACACTAAATGATATATACATGAATAACAATAACAATGGACCCACAAATTTGTCCCAACAAAATCATCATTCCAATTTGAGCAACCGCAATCCAACCAATTTGTCCATTAATAGCAATAATGGACCCCACCAAAATTACCATGGACTTGGAATACTTCAACGAGGGCAACAAAGTAGTAATTTCAATAGTCACTTTTCCAATCCACTATCCCAACAAAATTACCATGGACTTGGAATACTTCTACAAGGACATGGTAGTAGTAATGAACAATTTCATACTACACTATCCCAACAAAATCACCAGAGTGTGGTTGAACATGGACATGGTAGCAATATTGGAAATGTCTCATTTAATTCAAATGCAATGCCACAACAGAATGACCATGGCATTCAATATGGACGGAGTAGTAACTACGATCCATTCGATTACAATTTAGTATCACCGGAAAATGACCATGGCATTCAACATGGACGGGGTGGTAATTATGATCCATTCAATTACAATTTAATATCACCAGAAAATGACCATGGCATTCAACAAGGGCATGATGGTAATAATGATGTATTTTCCCATGCTATGTCACAACAAAATCATCCTGGTATTCAACATGGGCATGGTAGTACTAATGAAACATTTTCTCTTCCAGTGGTTCAAAATCAACTTGGTCAGCAAAATAATAATGTTTCATTTGGAATAAGTAACTATGAAGTGGGTAGTTCATCGCGAACGAATGAGAATCAACAACAGACCGAAGTGTTGGCACTTGATCAATGGCCACTCGAACAACAACAAAATTCTTGCAGTGGTAGTCAAGTTCTTAGACGAATCATTTACTCTAATGGTTTTCAATATGAAAATCTTGAGATTCATGGAAGCTTGGGGTTGATTACACATGCAGTTCGCCATGTGACACCTGTTAATGGAGGCCCAACAATTGATCGAACGATCGATTTTTCAGAGAAAGGCCTTGATGAAATAAAGAACTTCCTGGATCAGTATTGTATGGAACATAATTCAGCAGGGTACTTTCTTATACAAGATTCAATGTGTGCGTATTATGAGACTCTTTGCACCGGATATGATTGGATTGATGATATTAATATGGAGGGTCCTATCGATAATTTTTCAGATGAGATAATGGAGCAAGAGCAAGAGCAAGTTGGTGAGATTGGAACACCTGAAAAAAGGAACCTCTCAGAGCAGAGGAAAAGATGTGCACAATTTACATTGGGTGATTTCTGCGATTACTTTCATCTACCTATGGAAGAAGCAGCGGCTAGAGTGAACATAGCTGCATCAACTCTAAAGAAAATTTGTCGTAGAACAAAATTAAGAAGATGGCCACACAGAAAGGTGAAATGTCTTTTGAGGCAAATAGCAATACTTGAAAATCAATTGGACAGGCAAGATCCGGCGACAAGGGAAAGGACTCTAGAGGAAATTAAGCAGCTTAAACAAGACATGATTGATGATTGTGGCGGACATACACCAACTGCGTTGAATTATGTCGCTAACTTCTTGCCGCCGCACCATTATCAGCAGCAGTAG
Protein sequence

>Msa0413340

MANRKNNPSIEGATFKFNDDDAIDPNFFNMSNPTLNDIYMNNNNNGPTNLSQQNHHSNLSNRNPTNLSINSNNGPHQNYHGLGILQRGQQSSNFNSHFSNPLSQQNYHGLGILLQGHGSSNEQFHTTLSQQNHQSVVEHGHGSNIGNVSFNSNAMPQQNDHGIQYGRSSNYDPFDYNLVSPENDHGIQHGRGGNYDPFNYNLISPENDHGIQQGHDGNNDVFSHAMSQQNHPGIQHGHGSTNETFSLPVVQNQLGQQNNNVSFGISNYEVGSSSRTNENQQQTEVLALDQWPLEQQQNSCSGSQVLRRIIYSNGFQYENLEIHGSLGLITHAVRHVTPVNGGPTIDRTIDFSEKGLDEIKNFLDQYCMEHNSAGYFLIQDSMCAYYETLCTGYDWIDDINMEGPIDNFSDEIMEQEQEQVGEIGTPEKRNLSEQRKRCAQFTLGDFCDYFHLPMEEAAARVNIAASTLKKICRRTKLRRWPHRKVKCLLRQIAILENQLDRQDPATRERTLEEIKQLKQDMIDDCGGHTPTALNYVANFLPPHHYQQQ*