AlfalfaGEDB | Msa0413420

M. sativa cultivar zhongmu-4 / Msa0413420

KEGG: -
GO: -
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413420	KEH34360.1	87.729	546	61	5	1	544	1	542	0.0	922

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413420	A0A072V894	87.729	546	61	5	1	544	1	542	0.0	922

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TFs/TRs:

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Gene ID	Type	Classification
Msa0413420	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413420	MtrunA17_Chr3g0105711	87.729	546	61	5	1	544	1	542	0.0	922
Msa0413420	MtrunA17_Chr3g0136081	49.217	575	196	13	7	543	2	518	9.28e-165	478

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413420	AT5G16100.2	25.253	297	178	6	267	528	153	440	7.31e-24	105

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Find 108 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTTGAACCTTCCGTACT+TGG	0.325070	3_2:-57859865	None:intergenic
AAGAAGATGGCCACACAGAA+AGG	0.518680	3_2:+57862144	Msa0413420:CDS
AAGATCCGGCGACAAGGGAA+AGG	0.552910	3_2:+57862307	Msa0413420:CDS
AAGATGTGCACAATTTACAT+TGG	0.515263	3_2:+57862021	Msa0413420:CDS
AAGCGTTGGCACTTGATCAA+TGG	0.517228	3_2:+57860694	Msa0413420:CDS
AATGACCATGGCGTTCAACA+CGG	0.633314	3_2:+57860318	Msa0413420:CDS
AATGATCATGGCATTCAACA+TGG	0.582948	3_2:+57860390	Msa0413420:CDS
AATGATCATGGTATTCAACA+AGG	0.598505	3_2:+57860462	Msa0413420:CDS
AATGCTCCTGGTATTCAACA+TGG	0.649450	3_2:+57860531	Msa0413420:CDS
AATGGAGCAAGAGCAAGAGC+AGG	0.601208	3_2:+57861773	Msa0413420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGAAAAAACAATCCAAGTA+CGG	+	chr3_2:57859852-57859871	Msa0413420:CDS	30.0%
GTTGAAAAAATTTGGGTCAA+TGG	-	chr3_2:57859911-57859930	None:intergenic	30.0%
ATATCACCAGAAAATGATCA+TGG	+	chr3_2:57860450-57860469	Msa0413420:CDS	30.0%
AATGATCATGGTATTCAACA+AGG	+	chr3_2:57860462-57860481	Msa0413420:CDS	30.0%
ATGATCATGGTATTCAACAA+GGG	+	chr3_2:57860463-57860482	Msa0413420:CDS	30.0%
AGACGAATCATTTACTCTAA+TGG	+	chr3_2:57860762-57860781	Msa0413420:CDS	30.0%
TGATGAAATAAAGAACTTCC+TGG	+	chr3_2:57861097-57861116	Msa0413420:CDS	30.0%
ATCATCAATCCAATCATATC+CGG	-	chr3_2:57861204-57861223	None:intergenic	30.0%
CATTTATGTGTGTGACTAAA+TGG	-	chr3_2:57861434-57861453	None:intergenic	30.0%
AAGATGTGCACAATTTACAT+TGG	+	chr3_2:57862021-57862040	Msa0413420:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	57859844	57862449	57859844	ID=Msa0413420;Name=Msa0413420
chr3_2	mRNA	57859844	57862449	57859844	ID=Msa0413420-mRNA-1;Parent=Msa0413420;Name=Msa0413420-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|6\|0\|550
chr3_2	exon	57859844	57860783	57859844	ID=Msa0413420-mRNA-1:exon:11897;Parent=Msa0413420-mRNA-1
chr3_2	exon	57860874	57860982	57860874	ID=Msa0413420-mRNA-1:exon:11898;Parent=Msa0413420-mRNA-1
chr3_2	exon	57861079	57861257	57861079	ID=Msa0413420-mRNA-1:exon:11899;Parent=Msa0413420-mRNA-1
chr3_2	exon	57861766	57861845	57861766	ID=Msa0413420-mRNA-1:exon:11900;Parent=Msa0413420-mRNA-1
chr3_2	exon	57862016	57862165	57862016	ID=Msa0413420-mRNA-1:exon:11901;Parent=Msa0413420-mRNA-1
chr3_2	exon	57862255	57862449	57862255	ID=Msa0413420-mRNA-1:exon:11902;Parent=Msa0413420-mRNA-1
chr3_2	CDS	57859844	57860783	57859844	ID=Msa0413420-mRNA-1:cds;Parent=Msa0413420-mRNA-1
chr3_2	CDS	57860874	57860982	57860874	ID=Msa0413420-mRNA-1:cds;Parent=Msa0413420-mRNA-1
chr3_2	CDS	57861079	57861257	57861079	ID=Msa0413420-mRNA-1:cds;Parent=Msa0413420-mRNA-1
chr3_2	CDS	57861766	57861845	57861766	ID=Msa0413420-mRNA-1:cds;Parent=Msa0413420-mRNA-1
chr3_2	CDS	57862016	57862165	57862016	ID=Msa0413420-mRNA-1:cds;Parent=Msa0413420-mRNA-1
chr3_2	CDS	57862255	57862449	57862255	ID=Msa0413420-mRNA-1:cds;Parent=Msa0413420-mRNA-1

Gene Sequence

>Msa0413420

ATGGCTAACAGAAAAAACAATCCAAGTACGGAAGGTTCAACGTTTAAATTTAGTGATGATGATGCCATTGACCCAAATTTTTTCAACATGAGTAACCCTACACTAAATGATATATACATGAATAACAATAACAATGGACCCACAAATTTGTCCCAACAAAATCATCATTCCAATTTGAGCAACCGCAATCCAACCAATTTGTCCATTAATAGCAATAATGGACCCCACCAAAATTACCATGGACTTGGAGTACTTCAACGAGGGCAACAAAGTAGTAATTTCAATGGTCACTTTTCCAATCCACTGTCCCAACAAAATTACCATGGACTTGGAATACTTCTACAAGGACATGGTAGTAGTAATGAACAATTTCATACTACACTATCCCAACAAAATCACCAGAGTGTGGTTCAACATGGACATGGTAGTAATATTGGAAATGTCTCATTTAATTCCAATGCAATGCCACAACTGAATGACCATGGCGTTCAACACGGACGGAGTAGTAATTACGATCCATTCGATTACAATTTAGTATCACCAGAAAATGATCATGGCATTCAACATGGACGGGGTGGTAATTATGATCCATTCAATTACAATTTAATATCACCAGAAAATGATCATGGTATTCAACAAGGGCAGGATGGTAATAATGATGTATTTTCCCATGCAATGTCACAACAAAATGCTCCTGGTATTCAACATGGACATGGTAGTACAAATGAAACATTTTCTCTTCCAATGGTTCAAAATCAACTTGGTCAGCAAAATAATAATGTTTCATTTGGAATAAGTAACTTTGAAGTGGGTAGTTCGTCACGAATGAATGAGAATCAACATCAGACCGAAGCGTTGGCACTTGATCAATGGCCACTCGAACAACAACAAAATTCTTGCAGTGGTAGTCAAGTTCTTAGACGAATCATTTACTCTAATGGTTTTCAATATGAAAATCTTGAGATTCATGGAAGCTTGGGGTTGATTACACATGCAGTTCGCCATGTGACACCTGTTAATGGAGGCCCAACAATTGATCGAACGATTGATTTTTCTGAGAAAGGCCTTGATGAAATAAAGAACTTCCTGGATCAGTATTGTATGGAACATAATTCAGCAGGGTACTTTCTTATACAAGATTCAATGTGTGCGTATTATGAGACTCTTTGCACCGGATATGATTGGATTGATGATATTAATATGGAGGGTCCTATCGATAATTTTTCAGATGAGATAATGGAGCAAGAGCAAGAGCAGGAGCAAGTTGGTGAGATTGGAACACCTGAAAAAAGGAACCTCTCAGAGCAGAGGAAAAGATGTGCACAATTTACATTGGGTGATTTCTGCGATTACTTTCATCTACCTATGGAAGAAGCAGCGGCTAGAGTGAACATAGCTGCATCAACTCTAAAGAAAATTTGTCGTAGAACAAAATTAAGAAGATGGCCACACAGAAAGGTGAAATGTCTTTTGAGGCAAATAGCAATACTTGAAAATCAATTGGACAGGCAAGATCCGGCGACAAGGGAAAGGACTCTAGAGGAAATTAAGCAGCTTAAACAAGACATGATTGATGATTGTGGCGGACATACACCAACAGCGTTGAATTATGTCGCCAACTTCTTGCCGCCGCACCATTATCAGCAGCAGTAG

Protein sequence

>Msa0413420

MANRKNNPSTEGSTFKFSDDDAIDPNFFNMSNPTLNDIYMNNNNNGPTNLSQQNHHSNLSNRNPTNLSINSNNGPHQNYHGLGVLQRGQQSSNFNGHFSNPLSQQNYHGLGILLQGHGSSNEQFHTTLSQQNHQSVVQHGHGSNIGNVSFNSNAMPQLNDHGVQHGRSSNYDPFDYNLVSPENDHGIQHGRGGNYDPFNYNLISPENDHGIQQGQDGNNDVFSHAMSQQNAPGIQHGHGSTNETFSLPMVQNQLGQQNNNVSFGISNFEVGSSSRMNENQHQTEALALDQWPLEQQQNSCSGSQVLRRIIYSNGFQYENLEIHGSLGLITHAVRHVTPVNGGPTIDRTIDFSEKGLDEIKNFLDQYCMEHNSAGYFLIQDSMCAYYETLCTGYDWIDDINMEGPIDNFSDEIMEQEQEQEQVGEIGTPEKRNLSEQRKRCAQFTLGDFCDYFHLPMEEAAARVNIAASTLKKICRRTKLRRWPHRKVKCLLRQIAILENQLDRQDPATRERTLEEIKQLKQDMIDDCGGHTPTALNYVANFLPPHHYQQQ*