AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0413840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413840 MtrunA17_Chr3g0106421 88.426 216 23 1 41 254 1 216 5.23e-133 374
Msa0413840 MtrunA17_Chr2g0283941 39.847 261 130 4 1 253 1 242 3.30e-56 180
Msa0413840 MtrunA17_Chr3g0107461 46.154 169 79 1 1 169 1 157 1.16e-41 140
Msa0413840 MtrunA17_Chr3g0107381 39.500 200 97 5 1 196 1 180 2.19e-38 133
Msa0413840 MtrunA17_Chr3g0106501 48.889 135 69 0 41 175 1 135 3.56e-38 130
Msa0413840 MtrunA17_Chr4g0014321 39.759 166 88 1 1 166 1 154 2.38e-34 123
Msa0413840 MtrunA17_Chr3g0110131 36.015 261 136 8 1 251 1 240 1.91e-33 121
Msa0413840 MtrunA17_Chr4g0031421 41.844 141 82 0 41 181 1 141 2.62e-31 112
Msa0413840 MtrunA17_Chr3g0105791 41.727 139 81 0 41 179 1 139 4.50e-29 107
Msa0413840 MtrunA17_Chr8g0351751 35.000 180 103 2 1 178 1 168 2.20e-28 108
Msa0413840 MtrunA17_Chr4g0013041 35.393 178 101 2 1 178 1 164 1.35e-27 105
Msa0413840 MtrunA17_Chr4g0014031 35.714 168 96 1 1 168 1 156 6.77e-27 103
Msa0413840 MtrunA17_Chr5g0432691 33.735 166 97 2 1 166 1 153 1.87e-25 98.2
Msa0413840 MtrunA17_Chr4g0014131 39.837 123 74 0 46 168 34 156 4.79e-24 96.7
Msa0413840 MtrunA17_Chr3g0107351 31.361 169 103 2 3 171 2 157 2.07e-23 92.8
Msa0413840 MtrunA17_Chr2g0296831 39.098 133 69 1 1 133 1 121 4.56e-23 90.9
Msa0413840 MtrunA17_Chr2g0296861 37.427 171 94 2 1 171 1 158 8.32e-23 91.3
Msa0413840 MtrunA17_Chr3g0107361 31.361 169 103 2 3 171 2 157 1.04e-22 91.3
Msa0413840 MtrunA17_Chr3g0107331 32.164 171 103 2 3 173 2 159 5.59e-22 89.4
Msa0413840 MtrunA17_Chr3g0107341 30.769 169 104 2 3 171 2 157 2.43e-21 87.4
Msa0413840 MtrunA17_Chr5g0420351 31.361 169 102 3 1 169 1 155 4.53e-21 86.7
Msa0413840 MtrunA17_Chr4g0014121 34.959 123 80 0 46 168 62 184 9.84e-21 86.7
Msa0413840 MtrunA17_Chr1g0188681 31.609 174 95 5 1 169 1 155 5.92e-19 81.3
Msa0413840 MtrunA17_Chr1g0197261 30.409 171 101 5 1 169 1 155 4.00e-18 79.0
Msa0413840 MtrunA17_Chr1g0197321 29.586 169 106 2 1 169 1 156 7.80e-18 78.2
Msa0413840 MtrunA17_Chr1g0197461 31.579 171 99 5 3 171 2 156 1.29e-17 77.4
Msa0413840 MtrunA17_Chr1g0188651 32.544 169 92 4 1 166 1 150 3.00e-17 76.6
Msa0413840 MtrunA17_Chr1g0193311 31.361 169 102 3 1 169 1 155 5.51e-17 75.9
Msa0413840 MtrunA17_Chr7g0218151 31.953 169 101 3 1 169 1 155 1.11e-15 72.4
Msa0413840 MtrunA17_Chr1g0188661 31.765 170 100 4 1 169 1 155 4.68e-15 70.9
Msa0413840 MtrunA17_Chr4g0012761 30.178 169 104 3 1 169 1 155 3.23e-14 68.6
Msa0413840 MtrunA17_Chr4g0008701 27.907 129 81 1 3 131 6 122 3.04e-12 65.9
Msa0413840 MtrunA17_Chr7g0267601 25.581 129 84 1 3 131 6 122 4.65e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413840 AT3G05860.2 33.498 203 108 5 1 201 1 178 1.67e-24 97.4
Msa0413840 AT3G05860.3 33.498 203 108 5 1 201 1 178 2.15e-24 98.2
Msa0413840 AT3G05860.1 33.498 203 108 5 1 201 1 178 2.70e-24 98.2
Msa0413840 AT5G48670.1 36.527 167 93 2 1 167 1 154 1.77e-23 97.4
Msa0413840 AT1G65300.1 30.043 233 138 6 3 223 2 221 2.65e-20 87.8
Msa0413840 AT1G65330.1 37.008 127 68 1 3 129 2 116 5.93e-18 81.3
Msa0413840 AT5G26650.1 30.994 171 95 3 4 169 2 154 4.43e-17 80.1
Msa0413840 AT5G27960.1 29.437 231 133 8 4 216 2 220 8.05e-17 79.0
Msa0413840 AT5G27810.1 42.697 89 51 0 41 129 1 89 8.61e-17 74.7
Msa0413840 AT5G26630.1 29.586 169 102 3 1 167 1 154 2.43e-15 73.2
Msa0413840 AT2G28700.1 29.252 147 89 2 1 147 1 132 5.50e-14 70.9
Msa0413840 AT1G31640.1 29.412 170 92 5 3 165 2 150 1.08e-12 67.8
Msa0413840 AT1G22590.2 30.579 121 72 1 1 121 1 109 4.43e-12 63.2
Msa0413840 AT1G31630.1 27.108 166 103 4 3 166 2 151 2.87e-11 63.2

Find 51 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAGACTAACATGAATTA+TGG 0.238809 3_2:+58721997 Msa0413840:CDS
TGCTTTCTCATACTTCTCTT+TGG 0.254440 3_2:-58721671 None:intergenic
TGGTGGATCTATATAGCTTT+TGG 0.311230 3_2:+58721629 Msa0413840:CDS
TTACAACCTGCTCATGGGCT+TGG 0.331639 3_2:-58721858 None:intergenic
TAGATAGATCCAAATCCATT+TGG 0.374885 3_2:-58722087 None:intergenic
TTCAATAAGTATAATGAAGA+AGG 0.376914 3_2:+58721453 Msa0413840:CDS
TACAACCTGCTCATGGGCTT+GGG 0.383623 3_2:-58721857 None:intergenic
AAATGAAGCTGAAGCTATAA+AGG 0.395160 3_2:+58721879 Msa0413840:CDS
ATCATGGTCAAGCAGAAGTT+TGG 0.397626 3_2:+58721533 Msa0413840:CDS
GAAGTATGAGAAAGCAATGA+TGG 0.430824 3_2:+58721678 Msa0413840:CDS
CAATCAGAGGTTGGATTCAA+TGG 0.439661 3_2:+58721831 Msa0413840:CDS
AGATAGATCCAAATCCATTT+GGG 0.447437 3_2:-58722086 None:intergenic
CTTCATTTACAACCTGCTCA+TGG 0.458888 3_2:-58721864 None:intergenic
GAGGTAGGTGTAATAATCTA+TGG 0.465342 3_2:+58721505 Msa0413840:CDS
TATAAAGGATGGAGATTTGT+CGG 0.479871 3_2:+58721894 Msa0413840:CDS
TCAAAATCAAAATCATCAAA+TGG 0.488359 3_2:-58722063 None:intergenic
AAGTGATGAGCAACTACCTA+TGG 0.489610 3_2:+58722026 Msa0413840:CDS
TTTGAGCTTCTTTCTGCCCA+TGG 0.497356 3_2:-58720071 None:intergenic
AGGAGATATGCGGGATAACA+TGG 0.501537 3_2:+58721951 Msa0413840:CDS
TTCATTTACAACCTGCTCAT+GGG 0.507437 3_2:-58721863 None:intergenic
ATAATCTATGGTGAAAATCA+TGG 0.511237 3_2:+58721517 Msa0413840:CDS
ACCTACCTCTACTCCACAAA+GGG 0.515797 3_2:-58721491 None:intergenic
ACATAATCAATAAGTCGAAA+CGG 0.519099 3_2:+58720101 Msa0413840:CDS
CTTAATTGATGAAAATATGA+AGG 0.521607 3_2:+58721804 Msa0413840:CDS
AGTGAATTGAGCACCCTTTG+TGG 0.521846 3_2:+58721478 Msa0413840:CDS
CCTACTCGTAACTATAATGT+TGG 0.540983 3_2:+58721745 Msa0413840:CDS
GGTAACCCAAGCCCATGAGC+AGG 0.557566 3_2:+58721852 Msa0413840:CDS
GAAGGAAGTCAATCAGAGGT+TGG 0.560602 3_2:+58721822 Msa0413840:CDS
GAAGTTTGGCCACCCGCGAT+AGG 0.561174 3_2:+58721547 Msa0413840:CDS
GAAGCTGAAGCTATAAAGGA+TGG 0.563914 3_2:+58721883 Msa0413840:CDS
TCATGTTAGTCTCATAACCA+TGG 0.584822 3_2:-58721990 None:intergenic
GAGCACCCTTTGTGGAGTAG+AGG 0.592281 3_2:+58721486 Msa0413840:CDS
CATGTTAGTCTCATAACCAT+GGG 0.600840 3_2:-58721989 None:intergenic
GCTCAAGTGCCGCTGAGTGG+AGG 0.602451 3_2:+58721931 Msa0413840:CDS
GCTGAGTGGAGGAGATATGC+GGG 0.606989 3_2:+58721942 Msa0413840:CDS
CGCTGAGTGGAGGAGATATG+CGG 0.609024 3_2:+58721941 Msa0413840:CDS
TATGCGGGATAACATGGATG+AGG 0.617083 3_2:+58721957 Msa0413840:CDS
AATCATCAAATGGTGGCATG+AGG 0.619303 3_2:-58722053 None:intergenic
AATCAATAAGTCGAAACGGA+TGG 0.620948 3_2:+58720105 Msa0413840:CDS
ATTGCTCAAGTGCCGCTGAG+TGG 0.623375 3_2:+58721928 Msa0413840:CDS
AAATCAAAATCATCAAATGG+TGG 0.629108 3_2:-58722060 None:intergenic
CCAACATTATAGTTACGAGT+AGG 0.633928 3_2:-58721745 None:intergenic
CACCTACCTCTACTCCACAA+AGG 0.639768 3_2:-58721492 None:intergenic
CACACGTTCTAGTCCTATCG+CGG 0.645712 3_2:-58721560 None:intergenic
ACACGTTCTAGTCCTATCGC+GGG 0.647206 3_2:-58721559 None:intergenic
ACCCTTTGTGGAGTAGAGGT+AGG 0.653228 3_2:+58721490 Msa0413840:CDS
GGTGGCATGAGGAAGTCCAT+AGG 0.659527 3_2:-58722042 None:intergenic
ATATGAAGGAAGTCAATCAG+AGG 0.667679 3_2:+58721818 Msa0413840:CDS
CGTTCTAGTCCTATCGCGGG+TGG 0.679992 3_2:-58721556 None:intergenic
GATGAGGTTGCTGATACCCA+TGG 0.682185 3_2:+58721973 Msa0413840:CDS
CGCATATCTCCTCCACTCAG+CGG 0.698486 3_2:-58721940 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTATTTATTTATAA+TGG - chr3_2:58720389-58720408 None:intergenic 0.0%
!!! ATTTTTTTATTTATTTATAA+TGG - chr3_2:58720389-58720408 None:intergenic 0.0%
!!! TTTTTATCTTCAAAATAATA+GGG - chr3_2:58720535-58720554 None:intergenic 10.0%
!!! TTTTTTATCTTCAAAATAAT+AGG - chr3_2:58720536-58720555 None:intergenic 10.0%
!!! TTAAATTTTTTATTTGATTC+GGG - chr3_2:58720697-58720716 None:intergenic 10.0%
!!! TTATATATTTATTTTGAAAG+AGG - chr3_2:58720819-58720838 None:intergenic 10.0%
!!! TTTTTATCTTCAAAATAATA+GGG - chr3_2:58720535-58720554 None:intergenic 10.0%
!!! TTTTTTATCTTCAAAATAAT+AGG - chr3_2:58720536-58720555 None:intergenic 10.0%
!!! TTAAATTTTTTATTTGATTC+GGG - chr3_2:58720697-58720716 None:intergenic 10.0%
!!! TTATATATTTATTTTGAAAG+AGG - chr3_2:58720819-58720838 None:intergenic 10.0%
!!! TCAAAGATTTTAATTACAAT+GGG - chr3_2:58720240-58720259 None:intergenic 15.0%
!!! ATCAAAGATTTTAATTACAA+TGG - chr3_2:58720241-58720260 None:intergenic 15.0%
!! TAATTAAAATCTTTGATCTT+AGG + chr3_2:58720244-58720263 Msa0413840:intron 15.0%
!!! ATTGTTTTTATTATACAGTT+AGG + chr3_2:58720481-58720500 Msa0413840:intron 15.0%
!!! TTGTTTTTATTATACAGTTA+GGG + chr3_2:58720482-58720501 Msa0413840:intron 15.0%
!! AAAATTATTACTGCTATTAA+TGG + chr3_2:58720613-58720632 Msa0413840:intron 15.0%
!! AAATGGAAAAAATAAAAAGT+TGG + chr3_2:58721131-58721150 Msa0413840:intron 15.0%
!! TAGAAAAAAAATCAAAATCA+TGG - chr3_2:58721164-58721183 None:intergenic 15.0%
!!! TTTATAAAATGTTAAGTTGT+TGG + chr3_2:58721190-58721209 Msa0413840:intron 15.0%
!! ATATAAATGATATATAACTG+AGG - chr3_2:58721425-58721444 None:intergenic 15.0%
!!! TCAAAGATTTTAATTACAAT+GGG - chr3_2:58720240-58720259 None:intergenic 15.0%
!!! ATCAAAGATTTTAATTACAA+TGG - chr3_2:58720241-58720260 None:intergenic 15.0%
!! TAATTAAAATCTTTGATCTT+AGG + chr3_2:58720244-58720263 Msa0413840:intron 15.0%
!!! ATTGTTTTTATTATACAGTT+AGG + chr3_2:58720481-58720500 Msa0413840:intron 15.0%
!!! TTGTTTTTATTATACAGTTA+GGG + chr3_2:58720482-58720501 Msa0413840:intron 15.0%
!! AAAATTATTACTGCTATTAA+TGG + chr3_2:58720613-58720632 Msa0413840:intron 15.0%
!! AAATGGAAAAAATAAAAAGT+TGG + chr3_2:58721131-58721150 Msa0413840:intron 15.0%
!! TAGAAAAAAAATCAAAATCA+TGG - chr3_2:58721164-58721183 None:intergenic 15.0%
!!! TTTATAAAATGTTAAGTTGT+TGG + chr3_2:58721190-58721209 Msa0413840:intron 15.0%
!! ATATAAATGATATATAACTG+AGG - chr3_2:58721425-58721444 None:intergenic 15.0%
!! GATGAATATTTATTCTACTT+TGG - chr3_2:58720441-58720460 None:intergenic 20.0%
!! AAGATAAAAAAGTAAAATCG+TGG + chr3_2:58720545-58720564 Msa0413840:intron 20.0%
!!! ATCTTCCATTTTTTCAAAAA+CGG + chr3_2:58720642-58720661 Msa0413840:intron 20.0%
!! CATATAAAATCGATTATTGT+TGG + chr3_2:58720738-58720757 Msa0413840:intron 20.0%
!!! ATCATTTTATGAAAACTTCT+AGG - chr3_2:58721000-58721019 None:intergenic 20.0%
!! TTCAATAAGTATAATGAAGA+AGG + chr3_2:58721453-58721472 Msa0413840:CDS 20.0%
!! ACTCAAAAGAAACAAAAATA+TGG + chr3_2:58721609-58721628 Msa0413840:CDS 20.0%
!!! CTTCATATTTTCATCAATTA+AGG - chr3_2:58721806-58721825 None:intergenic 20.0%
!! CTTAATTGATGAAAATATGA+AGG + chr3_2:58721804-58721823 Msa0413840:CDS 20.0%
!! TCAAAATCAAAATCATCAAA+TGG - chr3_2:58722066-58722085 None:intergenic 20.0%
!! GATGAATATTTATTCTACTT+TGG - chr3_2:58720441-58720460 None:intergenic 20.0%
!! AAGATAAAAAAGTAAAATCG+TGG + chr3_2:58720545-58720564 Msa0413840:intron 20.0%
!!! ATCTTCCATTTTTTCAAAAA+CGG + chr3_2:58720642-58720661 Msa0413840:intron 20.0%
!! CATATAAAATCGATTATTGT+TGG + chr3_2:58720738-58720757 Msa0413840:intron 20.0%
!!! ATCATTTTATGAAAACTTCT+AGG - chr3_2:58721000-58721019 None:intergenic 20.0%
!! TTCAATAAGTATAATGAAGA+AGG + chr3_2:58721453-58721472 Msa0413840:CDS 20.0%
!! ACTCAAAAGAAACAAAAATA+TGG + chr3_2:58721609-58721628 Msa0413840:CDS 20.0%
!!! CTTCATATTTTCATCAATTA+AGG - chr3_2:58721806-58721825 None:intergenic 20.0%
!! CTTAATTGATGAAAATATGA+AGG + chr3_2:58721804-58721823 Msa0413840:CDS 20.0%
!! TCAAAATCAAAATCATCAAA+TGG - chr3_2:58722066-58722085 None:intergenic 20.0%
! ACATAATCAATAAGTCGAAA+CGG + chr3_2:58720101-58720120 Msa0413840:CDS 25.0%
! GCATGATTTAATTGAAACTA+AGG - chr3_2:58720172-58720191 None:intergenic 25.0%
!!! GGAAAATTAGTTTTACAATG+GGG - chr3_2:58720310-58720329 None:intergenic 25.0%
!!! CGGAAAATTAGTTTTACAAT+GGG - chr3_2:58720311-58720330 None:intergenic 25.0%
!!! ACGGAAAATTAGTTTTACAA+TGG - chr3_2:58720312-58720331 None:intergenic 25.0%
! ATGTAACTATTTCATCAACA+TGG - chr3_2:58720358-58720377 None:intergenic 25.0%
!!! TCTTCCATTTTTTCAAAAAC+GGG + chr3_2:58720643-58720662 Msa0413840:intron 25.0%
! TTAGATATGAATACCTAAAG+CGG + chr3_2:58721095-58721114 Msa0413840:intron 25.0%
!! ATAAAATGTTAAGTTGTTGG+TGG + chr3_2:58721193-58721212 Msa0413840:intron 25.0%
!!! AGTGCGATTTTTTTATTACA+CGG - chr3_2:58721238-58721257 None:intergenic 25.0%
! TACTTCGTAAAAAAAGTTTG+AGG + chr3_2:58721287-58721306 Msa0413840:intron 25.0%
! AATAGAAAACCTCTTATGTT+TGG + chr3_2:58721381-58721400 Msa0413840:intron 25.0%
! ATAGAAAACCTCTTATGTTT+GGG + chr3_2:58721382-58721401 Msa0413840:intron 25.0%
! AAAATTTACCCAAACATAAG+AGG - chr3_2:58721393-58721412 None:intergenic 25.0%
! AAATGATATATAACTGAGGA+GGG - chr3_2:58721421-58721440 None:intergenic 25.0%
! TAAATGATATATAACTGAGG+AGG - chr3_2:58721422-58721441 None:intergenic 25.0%
! ATAATCTATGGTGAAAATCA+TGG + chr3_2:58721517-58721536 Msa0413840:CDS 25.0%
! CAAAAGAAACAAAAATATGG+TGG + chr3_2:58721612-58721631 Msa0413840:CDS 25.0%
! TATGAGACTAACATGAATTA+TGG + chr3_2:58721997-58722016 Msa0413840:CDS 25.0%
! AAATCAAAATCATCAAATGG+TGG - chr3_2:58722063-58722082 None:intergenic 25.0%
! ACATAATCAATAAGTCGAAA+CGG + chr3_2:58720101-58720120 Msa0413840:CDS 25.0%
! GCATGATTTAATTGAAACTA+AGG - chr3_2:58720172-58720191 None:intergenic 25.0%
!!! GGAAAATTAGTTTTACAATG+GGG - chr3_2:58720310-58720329 None:intergenic 25.0%
!!! CGGAAAATTAGTTTTACAAT+GGG - chr3_2:58720311-58720330 None:intergenic 25.0%
!!! ACGGAAAATTAGTTTTACAA+TGG - chr3_2:58720312-58720331 None:intergenic 25.0%
! ATGTAACTATTTCATCAACA+TGG - chr3_2:58720358-58720377 None:intergenic 25.0%
!!! TCTTCCATTTTTTCAAAAAC+GGG + chr3_2:58720643-58720662 Msa0413840:intron 25.0%
! TTAGATATGAATACCTAAAG+CGG + chr3_2:58721095-58721114 Msa0413840:intron 25.0%
!! ATAAAATGTTAAGTTGTTGG+TGG + chr3_2:58721193-58721212 Msa0413840:intron 25.0%
!!! AGTGCGATTTTTTTATTACA+CGG - chr3_2:58721238-58721257 None:intergenic 25.0%
! TACTTCGTAAAAAAAGTTTG+AGG + chr3_2:58721287-58721306 Msa0413840:intron 25.0%
! AATAGAAAACCTCTTATGTT+TGG + chr3_2:58721381-58721400 Msa0413840:intron 25.0%
! ATAGAAAACCTCTTATGTTT+GGG + chr3_2:58721382-58721401 Msa0413840:intron 25.0%
! AAAATTTACCCAAACATAAG+AGG - chr3_2:58721393-58721412 None:intergenic 25.0%
! AAATGATATATAACTGAGGA+GGG - chr3_2:58721421-58721440 None:intergenic 25.0%
! TAAATGATATATAACTGAGG+AGG - chr3_2:58721422-58721441 None:intergenic 25.0%
! ATAATCTATGGTGAAAATCA+TGG + chr3_2:58721517-58721536 Msa0413840:CDS 25.0%
! CAAAAGAAACAAAAATATGG+TGG + chr3_2:58721612-58721631 Msa0413840:CDS 25.0%
! TATGAGACTAACATGAATTA+TGG + chr3_2:58721997-58722016 Msa0413840:CDS 25.0%
! AAATCAAAATCATCAAATGG+TGG - chr3_2:58722063-58722082 None:intergenic 25.0%
ACATTCAGAAAAAGAACAGA+AGG + chr3_2:58720130-58720149 Msa0413840:CDS 30.0%
!! ATAAGTTCTAGAGATACCTT+GGG - chr3_2:58720277-58720296 None:intergenic 30.0%
AAAATAATAGGGCAAGTCAT+TGG - chr3_2:58720524-58720543 None:intergenic 30.0%
AAAAAAGAATGAAAGTCGTG+TGG - chr3_2:58720578-58720597 None:intergenic 30.0%
!! TTTGCCCGTTTTTGAAAAAA+TGG - chr3_2:58720650-58720669 None:intergenic 30.0%
! TATATAGCTTTTGGATGCAA+AGG + chr3_2:58721638-58721657 Msa0413840:CDS 30.0%
AAATGAAGCTGAAGCTATAA+AGG + chr3_2:58721879-58721898 Msa0413840:CDS 30.0%
TATAAAGGATGGAGATTTGT+CGG + chr3_2:58721894-58721913 Msa0413840:CDS 30.0%
!!! GATTTTGATTTTGACCCAAA+TGG + chr3_2:58722072-58722091 Msa0413840:CDS 30.0%
AGATAGATCCAAATCCATTT+GGG - chr3_2:58722089-58722108 None:intergenic 30.0%
TAGATAGATCCAAATCCATT+TGG - chr3_2:58722090-58722109 None:intergenic 30.0%
ACATTCAGAAAAAGAACAGA+AGG + chr3_2:58720130-58720149 Msa0413840:CDS 30.0%
!! ATAAGTTCTAGAGATACCTT+GGG - chr3_2:58720277-58720296 None:intergenic 30.0%
AAAATAATAGGGCAAGTCAT+TGG - chr3_2:58720524-58720543 None:intergenic 30.0%
AAAAAAGAATGAAAGTCGTG+TGG - chr3_2:58720578-58720597 None:intergenic 30.0%
!! TTTGCCCGTTTTTGAAAAAA+TGG - chr3_2:58720650-58720669 None:intergenic 30.0%
! TATATAGCTTTTGGATGCAA+AGG + chr3_2:58721638-58721657 Msa0413840:CDS 30.0%
AAATGAAGCTGAAGCTATAA+AGG + chr3_2:58721879-58721898 Msa0413840:CDS 30.0%
TATAAAGGATGGAGATTTGT+CGG + chr3_2:58721894-58721913 Msa0413840:CDS 30.0%
!!! GATTTTGATTTTGACCCAAA+TGG + chr3_2:58722072-58722091 Msa0413840:CDS 30.0%
AGATAGATCCAAATCCATTT+GGG - chr3_2:58722089-58722108 None:intergenic 30.0%
TAGATAGATCCAAATCCATT+TGG - chr3_2:58722090-58722109 None:intergenic 30.0%
AATCAATAAGTCGAAACGGA+TGG + chr3_2:58720105-58720124 Msa0413840:CDS 35.0%
!! CATAAGTTCTAGAGATACCT+TGG - chr3_2:58720278-58720297 None:intergenic 35.0%
! TAATTTTCCGTCGACATACA+TGG + chr3_2:58720321-58720340 Msa0413840:intron 35.0%
! TTTTCAAAAACGGGCAAAGT+CGG + chr3_2:58720652-58720671 Msa0413840:intron 35.0%
ATATGCACTCTCGTTCAATT+TGG + chr3_2:58720937-58720956 Msa0413840:intron 35.0%
!!! CGATTTTTTTATTACACGGC+TGG - chr3_2:58721234-58721253 None:intergenic 35.0%
GAGGTAGGTGTAATAATCTA+TGG + chr3_2:58721505-58721524 Msa0413840:CDS 35.0%
!! TGGTGGATCTATATAGCTTT+TGG + chr3_2:58721629-58721648 Msa0413840:CDS 35.0%
TGCTTTCTCATACTTCTCTT+TGG - chr3_2:58721674-58721693 None:intergenic 35.0%
GAAGTATGAGAAAGCAATGA+TGG + chr3_2:58721678-58721697 Msa0413840:CDS 35.0%
CCAACATTATAGTTACGAGT+AGG - chr3_2:58721748-58721767 None:intergenic 35.0%
CCTACTCGTAACTATAATGT+TGG + chr3_2:58721745-58721764 Msa0413840:CDS 35.0%
ATATGAAGGAAGTCAATCAG+AGG + chr3_2:58721818-58721837 Msa0413840:CDS 35.0%
TTCATTTACAACCTGCTCAT+GGG - chr3_2:58721866-58721885 None:intergenic 35.0%
! CATGTTAGTCTCATAACCAT+GGG - chr3_2:58721992-58722011 None:intergenic 35.0%
! TCATGTTAGTCTCATAACCA+TGG - chr3_2:58721993-58722012 None:intergenic 35.0%
!! GATTTTGACCCAAATGGATT+TGG + chr3_2:58722078-58722097 Msa0413840:CDS 35.0%
AATCAATAAGTCGAAACGGA+TGG + chr3_2:58720105-58720124 Msa0413840:CDS 35.0%
!! CATAAGTTCTAGAGATACCT+TGG - chr3_2:58720278-58720297 None:intergenic 35.0%
! TAATTTTCCGTCGACATACA+TGG + chr3_2:58720321-58720340 Msa0413840:intron 35.0%
! TTTTCAAAAACGGGCAAAGT+CGG + chr3_2:58720652-58720671 Msa0413840:intron 35.0%
ATATGCACTCTCGTTCAATT+TGG + chr3_2:58720937-58720956 Msa0413840:intron 35.0%
!!! CGATTTTTTTATTACACGGC+TGG - chr3_2:58721234-58721253 None:intergenic 35.0%
GAGGTAGGTGTAATAATCTA+TGG + chr3_2:58721505-58721524 Msa0413840:CDS 35.0%
!! TGGTGGATCTATATAGCTTT+TGG + chr3_2:58721629-58721648 Msa0413840:CDS 35.0%
TGCTTTCTCATACTTCTCTT+TGG - chr3_2:58721674-58721693 None:intergenic 35.0%
GAAGTATGAGAAAGCAATGA+TGG + chr3_2:58721678-58721697 Msa0413840:CDS 35.0%
CCAACATTATAGTTACGAGT+AGG - chr3_2:58721748-58721767 None:intergenic 35.0%
CCTACTCGTAACTATAATGT+TGG + chr3_2:58721745-58721764 Msa0413840:CDS 35.0%
ATATGAAGGAAGTCAATCAG+AGG + chr3_2:58721818-58721837 Msa0413840:CDS 35.0%
TTCATTTACAACCTGCTCAT+GGG - chr3_2:58721866-58721885 None:intergenic 35.0%
! CATGTTAGTCTCATAACCAT+GGG - chr3_2:58721992-58722011 None:intergenic 35.0%
! TCATGTTAGTCTCATAACCA+TGG - chr3_2:58721993-58722012 None:intergenic 35.0%
!! GATTTTGACCCAAATGGATT+TGG + chr3_2:58722078-58722097 Msa0413840:CDS 35.0%
AATCCAACCATGTATGTCGA+CGG - chr3_2:58720331-58720350 None:intergenic 40.0%
ATAATAGGGCAAGTCATTGG+TGG - chr3_2:58720521-58720540 None:intergenic 40.0%
CACTCTCGTTCAATTTGGTT+TGG + chr3_2:58720942-58720961 Msa0413840:intron 40.0%
ATCATGGTCAAGCAGAAGTT+TGG + chr3_2:58721533-58721552 Msa0413840:CDS 40.0%
CAATCAGAGGTTGGATTCAA+TGG + chr3_2:58721831-58721850 Msa0413840:CDS 40.0%
CTTCATTTACAACCTGCTCA+TGG - chr3_2:58721867-58721886 None:intergenic 40.0%
GAAGCTGAAGCTATAAAGGA+TGG + chr3_2:58721883-58721902 Msa0413840:CDS 40.0%
AAGTGATGAGCAACTACCTA+TGG + chr3_2:58722026-58722045 Msa0413840:CDS 40.0%
AATCATCAAATGGTGGCATG+AGG - chr3_2:58722056-58722075 None:intergenic 40.0%
AATCCAACCATGTATGTCGA+CGG - chr3_2:58720331-58720350 None:intergenic 40.0%
ATAATAGGGCAAGTCATTGG+TGG - chr3_2:58720521-58720540 None:intergenic 40.0%
CACTCTCGTTCAATTTGGTT+TGG + chr3_2:58720942-58720961 Msa0413840:intron 40.0%
ATCATGGTCAAGCAGAAGTT+TGG + chr3_2:58721533-58721552 Msa0413840:CDS 40.0%
CAATCAGAGGTTGGATTCAA+TGG + chr3_2:58721831-58721850 Msa0413840:CDS 40.0%
CTTCATTTACAACCTGCTCA+TGG - chr3_2:58721867-58721886 None:intergenic 40.0%
GAAGCTGAAGCTATAAAGGA+TGG + chr3_2:58721883-58721902 Msa0413840:CDS 40.0%
AAGTGATGAGCAACTACCTA+TGG + chr3_2:58722026-58722045 Msa0413840:CDS 40.0%
AATCATCAAATGGTGGCATG+AGG - chr3_2:58722056-58722075 None:intergenic 40.0%
!! CTCTAGAACTTATGCCCTTG+AGG + chr3_2:58720284-58720303 Msa0413840:intron 45.0%
! GTTTTACAATGGGGCCTCAA+GGG - chr3_2:58720301-58720320 None:intergenic 45.0%
! AGTTTTACAATGGGGCCTCA+AGG - chr3_2:58720302-58720321 None:intergenic 45.0%
TTTCCGTCGACATACATGGT+TGG + chr3_2:58720325-58720344 Msa0413840:intron 45.0%
GTAATGACAGTGACCGCTTT+AGG - chr3_2:58721111-58721130 None:intergenic 45.0%
GCGGTCACTGTCATTACAAA+TGG + chr3_2:58721114-58721133 Msa0413840:intron 45.0%
AGTGAATTGAGCACCCTTTG+TGG + chr3_2:58721478-58721497 Msa0413840:CDS 45.0%
ACCTACCTCTACTCCACAAA+GGG - chr3_2:58721494-58721513 None:intergenic 45.0%
GAAGGAAGTCAATCAGAGGT+TGG + chr3_2:58721822-58721841 Msa0413840:CDS 45.0%
AGGAGATATGCGGGATAACA+TGG + chr3_2:58721951-58721970 Msa0413840:CDS 45.0%
TATGCGGGATAACATGGATG+AGG + chr3_2:58721957-58721976 Msa0413840:CDS 45.0%
!! CTCTAGAACTTATGCCCTTG+AGG + chr3_2:58720284-58720303 Msa0413840:intron 45.0%
! GTTTTACAATGGGGCCTCAA+GGG - chr3_2:58720301-58720320 None:intergenic 45.0%
! AGTTTTACAATGGGGCCTCA+AGG - chr3_2:58720302-58720321 None:intergenic 45.0%
TTTCCGTCGACATACATGGT+TGG + chr3_2:58720325-58720344 Msa0413840:intron 45.0%
GTAATGACAGTGACCGCTTT+AGG - chr3_2:58721111-58721130 None:intergenic 45.0%
GCGGTCACTGTCATTACAAA+TGG + chr3_2:58721114-58721133 Msa0413840:intron 45.0%
AGTGAATTGAGCACCCTTTG+TGG + chr3_2:58721478-58721497 Msa0413840:CDS 45.0%
ACCTACCTCTACTCCACAAA+GGG - chr3_2:58721494-58721513 None:intergenic 45.0%
GAAGGAAGTCAATCAGAGGT+TGG + chr3_2:58721822-58721841 Msa0413840:CDS 45.0%
AGGAGATATGCGGGATAACA+TGG + chr3_2:58721951-58721970 Msa0413840:CDS 45.0%
TATGCGGGATAACATGGATG+AGG + chr3_2:58721957-58721976 Msa0413840:CDS 45.0%
!!! TTTAAATTTTTTATTTGATT+CGG - chr3_2:58720698-58720717 None:intergenic 5.0%
!! ATCAAATAAAAAATTTAAAT+TGG + chr3_2:58720699-58720718 Msa0413840:intron 5.0%
!! TATACAAAATATAATATTAT+TGG - chr3_2:58721025-58721044 None:intergenic 5.0%
!!! TTTAAATTTTTTATTTGATT+CGG - chr3_2:58720698-58720717 None:intergenic 5.0%
!! ATCAAATAAAAAATTTAAAT+TGG + chr3_2:58720699-58720718 Msa0413840:intron 5.0%
!! TATACAAAATATAATATTAT+TGG - chr3_2:58721025-58721044 None:intergenic 5.0%
GATCTTAGGTGTGTGTCCCA+AGG + chr3_2:58720258-58720277 Msa0413840:intron 50.0%
TCAAAAACGGGCAAAGTCGG+TGG + chr3_2:58720655-58720674 Msa0413840:intron 50.0%
ACCCTTTGTGGAGTAGAGGT+AGG + chr3_2:58721490-58721509 Msa0413840:CDS 50.0%
CACCTACCTCTACTCCACAA+AGG - chr3_2:58721495-58721514 None:intergenic 50.0%
ACACGTTCTAGTCCTATCGC+GGG - chr3_2:58721562-58721581 None:intergenic 50.0%
CACACGTTCTAGTCCTATCG+CGG - chr3_2:58721563-58721582 None:intergenic 50.0%
TACAACCTGCTCATGGGCTT+GGG - chr3_2:58721860-58721879 None:intergenic 50.0%
TTACAACCTGCTCATGGGCT+TGG - chr3_2:58721861-58721880 None:intergenic 50.0%
GATGAGGTTGCTGATACCCA+TGG + chr3_2:58721973-58721992 Msa0413840:CDS 50.0%
GATCTTAGGTGTGTGTCCCA+AGG + chr3_2:58720258-58720277 Msa0413840:intron 50.0%
TCAAAAACGGGCAAAGTCGG+TGG + chr3_2:58720655-58720674 Msa0413840:intron 50.0%
ACCCTTTGTGGAGTAGAGGT+AGG + chr3_2:58721490-58721509 Msa0413840:CDS 50.0%
CACCTACCTCTACTCCACAA+AGG - chr3_2:58721495-58721514 None:intergenic 50.0%
ACACGTTCTAGTCCTATCGC+GGG - chr3_2:58721562-58721581 None:intergenic 50.0%
CACACGTTCTAGTCCTATCG+CGG - chr3_2:58721563-58721582 None:intergenic 50.0%
TACAACCTGCTCATGGGCTT+GGG - chr3_2:58721860-58721879 None:intergenic 50.0%
TTACAACCTGCTCATGGGCT+TGG - chr3_2:58721861-58721880 None:intergenic 50.0%
GATGAGGTTGCTGATACCCA+TGG + chr3_2:58721973-58721992 Msa0413840:CDS 50.0%
GAGCACCCTTTGTGGAGTAG+AGG + chr3_2:58721486-58721505 Msa0413840:CDS 55.0%
! ATTGCTCAAGTGCCGCTGAG+TGG + chr3_2:58721928-58721947 Msa0413840:CDS 55.0%
CGCATATCTCCTCCACTCAG+CGG - chr3_2:58721943-58721962 None:intergenic 55.0%
CGCTGAGTGGAGGAGATATG+CGG + chr3_2:58721941-58721960 Msa0413840:CDS 55.0%
GCTGAGTGGAGGAGATATGC+GGG + chr3_2:58721942-58721961 Msa0413840:CDS 55.0%
GGTGGCATGAGGAAGTCCAT+AGG - chr3_2:58722045-58722064 None:intergenic 55.0%
GAGCACCCTTTGTGGAGTAG+AGG + chr3_2:58721486-58721505 Msa0413840:CDS 55.0%
! ATTGCTCAAGTGCCGCTGAG+TGG + chr3_2:58721928-58721947 Msa0413840:CDS 55.0%
CGCATATCTCCTCCACTCAG+CGG - chr3_2:58721943-58721962 None:intergenic 55.0%
CGCTGAGTGGAGGAGATATG+CGG + chr3_2:58721941-58721960 Msa0413840:CDS 55.0%
GCTGAGTGGAGGAGATATGC+GGG + chr3_2:58721942-58721961 Msa0413840:CDS 55.0%
GGTGGCATGAGGAAGTCCAT+AGG - chr3_2:58722045-58722064 None:intergenic 55.0%
GAAGTTTGGCCACCCGCGAT+AGG + chr3_2:58721547-58721566 Msa0413840:CDS 60.0%
CGTTCTAGTCCTATCGCGGG+TGG - chr3_2:58721559-58721578 None:intergenic 60.0%
GGTAACCCAAGCCCATGAGC+AGG + chr3_2:58721852-58721871 Msa0413840:CDS 60.0%
GAAGTTTGGCCACCCGCGAT+AGG + chr3_2:58721547-58721566 Msa0413840:CDS 60.0%
CGTTCTAGTCCTATCGCGGG+TGG - chr3_2:58721559-58721578 None:intergenic 60.0%
GGTAACCCAAGCCCATGAGC+AGG + chr3_2:58721852-58721871 Msa0413840:CDS 60.0%
! GCTCAAGTGCCGCTGAGTGG+AGG + chr3_2:58721931-58721950 Msa0413840:CDS 65.0%
! GCTCAAGTGCCGCTGAGTGG+AGG + chr3_2:58721931-58721950 Msa0413840:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 58720073 58722110 58720073 ID=Msa0413840;Name=Msa0413840
chr3_2 mRNA 58720073 58722110 58720073 ID=Msa0413840-mRNA-1;Parent=Msa0413840;Name=Msa0413840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0|2|0|254
chr3_2 exon 58720073 58720154 58720073 ID=Msa0413840-mRNA-1:exon:12176;Parent=Msa0413840-mRNA-1
chr3_2 exon 58721428 58722110 58721428 ID=Msa0413840-mRNA-1:exon:12177;Parent=Msa0413840-mRNA-1
chr3_2 CDS 58720073 58720154 58720073 ID=Msa0413840-mRNA-1:cds;Parent=Msa0413840-mRNA-1
chr3_2 CDS 58721428 58722110 58721428 ID=Msa0413840-mRNA-1:cds;Parent=Msa0413840-mRNA-1
Gene Sequence

>Msa0413840

ATGGGCAGAAAGAAGCTCAAACTTGAATACATAATCAATAAGTCGAAACGGATGGCAACATTCAGAAAAAGAACAGAAGGTTTTATATATCATTTATATATATGTTTTTCAATAAGTATAATGAAGAAGGCTAGTGAATTGAGCACCCTTTGTGGAGTAGAGGTAGGTGTAATAATCTATGGTGAAAATCATGGTCAAGCAGAAGTTTGGCCACCCGCGATAGGACTAGAACGTGTGTTGCACAAGTTTGAGAGTTTGTCTGAACTCAAAAGAAACAAAAATATGGTGGATCTATATAGCTTTTGGATGCAAAGGATTGAAAAAGCCAAAGAGAAGTATGAGAAAGCAATGATGGAAAACAAGAAGAAAGAAATGACTAATTTTATACGTCAATTTATTCCTACTCGTAACTATAATGTTGGTGATATGAGCTTAAATGATATCAATTATCTGACGACCTTAATTGATGAAAATATGAAGGAAGTCAATCAGAGGTTGGATTCAATGGTAACCCAAGCCCATGAGCAGGTTGTAAATGAAGCTGAAGCTATAAAGGATGGAGATTTGTCGGCTAGTACAAACATTGCTCAAGTGCCGCTGAGTGGAGGAGATATGCGGGATAACATGGATGAGGTTGCTGATACCCATGGTTATGAGACTAACATGAATTATGGTTTGCAAAGTGATGAGCAACTACCTATGGACTTCCTCATGCCACCATTTGATGATTTTGATTTTGACCCAAATGGATTTGGATCTATCTAG

Protein sequence

>Msa0413840

MGRKKLKLEYIINKSKRMATFRKRTEGFIYHLYICFSISIMKKASELSTLCGVEVGVIIYGENHGQAEVWPPAIGLERVLHKFESLSELKRNKNMVDLYSFWMQRIEKAKEKYEKAMMENKKKEMTNFIRQFIPTRNYNVGDMSLNDINYLTTLIDENMKEVNQRLDSMVTQAHEQVVNEAEAIKDGDLSASTNIAQVPLSGGDMRDNMDEVADTHGYETNMNYGLQSDEQLPMDFLMPPFDDFDFDPNGFGSI*