AlfalfaGEDB | Msa0413840

M. sativa cultivar zhongmu-4 / Msa0413840

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413840	AES69527.1	85.156	256	24	2	1	254	1	244	8.13e-147	420

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413840	sp\|Q9FJK3\|AGL80_ARATH	36.527	167	93	2	1	167	1	154	1.74e-22	97.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413840	G7IWW4	85.156	256	24	2	1	254	1	244	3.88e-147	420

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TFs/TRs:

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Gene ID	Type	Classification
Msa0413840	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413840	MtrunA17_Chr3g0106421	88.426	216	23	1	41	254	1	216	5.23e-133	374
Msa0413840	MtrunA17_Chr2g0283941	39.847	261	130	4	1	253	1	242	3.30e-56	180
Msa0413840	MtrunA17_Chr3g0107461	46.154	169	79	1	1	169	1	157	1.16e-41	140
Msa0413840	MtrunA17_Chr3g0107381	39.500	200	97	5	1	196	1	180	2.19e-38	133
Msa0413840	MtrunA17_Chr3g0106501	48.889	135	69	0	41	175	1	135	3.56e-38	130
Msa0413840	MtrunA17_Chr4g0014321	39.759	166	88	1	1	166	1	154	2.38e-34	123
Msa0413840	MtrunA17_Chr3g0110131	36.015	261	136	8	1	251	1	240	1.91e-33	121
Msa0413840	MtrunA17_Chr4g0031421	41.844	141	82	0	41	181	1	141	2.62e-31	112
Msa0413840	MtrunA17_Chr3g0105791	41.727	139	81	0	41	179	1	139	4.50e-29	107
Msa0413840	MtrunA17_Chr8g0351751	35.000	180	103	2	1	178	1	168	2.20e-28	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0413840	AT3G05860.2	33.498	203	108	5	1	201	1	178	1.67e-24	97.4
Msa0413840	AT3G05860.3	33.498	203	108	5	1	201	1	178	2.15e-24	98.2
Msa0413840	AT3G05860.1	33.498	203	108	5	1	201	1	178	2.70e-24	98.2
Msa0413840	AT5G48670.1	36.527	167	93	2	1	167	1	154	1.77e-23	97.4
Msa0413840	AT1G65300.1	30.043	233	138	6	3	223	2	221	2.65e-20	87.8
Msa0413840	AT1G65330.1	37.008	127	68	1	3	129	2	116	5.93e-18	81.3
Msa0413840	AT5G26650.1	30.994	171	95	3	4	169	2	154	4.43e-17	80.1
Msa0413840	AT5G27960.1	29.437	231	133	8	4	216	2	220	8.05e-17	79.0
Msa0413840	AT5G27810.1	42.697	89	51	0	41	129	1	89	8.61e-17	74.7
Msa0413840	AT5G26630.1	29.586	169	102	3	1	167	1	154	2.43e-15	73.2

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Find 51 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAAATCATCAAATGG+TGG	0.629108	3_2:-58722060	None:intergenic
AAATGAAGCTGAAGCTATAA+AGG	0.395160	3_2:+58721879	Msa0413840:CDS
AAGTGATGAGCAACTACCTA+TGG	0.489610	3_2:+58722026	Msa0413840:CDS
AATCAATAAGTCGAAACGGA+TGG	0.620948	3_2:+58720105	Msa0413840:CDS
AATCATCAAATGGTGGCATG+AGG	0.619303	3_2:-58722053	None:intergenic
ACACGTTCTAGTCCTATCGC+GGG	0.647206	3_2:-58721559	None:intergenic
ACATAATCAATAAGTCGAAA+CGG	0.519099	3_2:+58720101	Msa0413840:CDS
ACCCTTTGTGGAGTAGAGGT+AGG	0.653228	3_2:+58721490	Msa0413840:CDS
ACCTACCTCTACTCCACAAA+GGG	0.515797	3_2:-58721491	None:intergenic
AGATAGATCCAAATCCATTT+GGG	0.447437	3_2:-58722086	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTCAGAAAAAGAACAGA+AGG	+	chr3_2:58720130-58720149	Msa0413840:CDS	30.0%
AAAATAATAGGGCAAGTCAT+TGG	-	chr3_2:58720524-58720543	None:intergenic	30.0%
AAAAAAGAATGAAAGTCGTG+TGG	-	chr3_2:58720578-58720597	None:intergenic	30.0%
AAATGAAGCTGAAGCTATAA+AGG	+	chr3_2:58721879-58721898	Msa0413840:CDS	30.0%
TATAAAGGATGGAGATTTGT+CGG	+	chr3_2:58721894-58721913	Msa0413840:CDS	30.0%
AGATAGATCCAAATCCATTT+GGG	-	chr3_2:58722089-58722108	None:intergenic	30.0%
TAGATAGATCCAAATCCATT+TGG	-	chr3_2:58722090-58722109	None:intergenic	30.0%
ACATTCAGAAAAAGAACAGA+AGG	+	chr3_2:58720130-58720149	Msa0413840:CDS	30.0%
AAAATAATAGGGCAAGTCAT+TGG	-	chr3_2:58720524-58720543	None:intergenic	30.0%
AAAAAAGAATGAAAGTCGTG+TGG	-	chr3_2:58720578-58720597	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	58720073	58722110	58720073	ID=Msa0413840;Name=Msa0413840
chr3_2	mRNA	58720073	58722110	58720073	ID=Msa0413840-mRNA-1;Parent=Msa0413840;Name=Msa0413840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|0\|0\|2\|0\|254
chr3_2	exon	58720073	58720154	58720073	ID=Msa0413840-mRNA-1:exon:12176;Parent=Msa0413840-mRNA-1
chr3_2	exon	58721428	58722110	58721428	ID=Msa0413840-mRNA-1:exon:12177;Parent=Msa0413840-mRNA-1
chr3_2	CDS	58720073	58720154	58720073	ID=Msa0413840-mRNA-1:cds;Parent=Msa0413840-mRNA-1
chr3_2	CDS	58721428	58722110	58721428	ID=Msa0413840-mRNA-1:cds;Parent=Msa0413840-mRNA-1

Gene Sequence

>Msa0413840

ATGGGCAGAAAGAAGCTCAAACTTGAATACATAATCAATAAGTCGAAACGGATGGCAACATTCAGAAAAAGAACAGAAGGTTTTATATATCATTTATATATATGTTTTTCAATAAGTATAATGAAGAAGGCTAGTGAATTGAGCACCCTTTGTGGAGTAGAGGTAGGTGTAATAATCTATGGTGAAAATCATGGTCAAGCAGAAGTTTGGCCACCCGCGATAGGACTAGAACGTGTGTTGCACAAGTTTGAGAGTTTGTCTGAACTCAAAAGAAACAAAAATATGGTGGATCTATATAGCTTTTGGATGCAAAGGATTGAAAAAGCCAAAGAGAAGTATGAGAAAGCAATGATGGAAAACAAGAAGAAAGAAATGACTAATTTTATACGTCAATTTATTCCTACTCGTAACTATAATGTTGGTGATATGAGCTTAAATGATATCAATTATCTGACGACCTTAATTGATGAAAATATGAAGGAAGTCAATCAGAGGTTGGATTCAATGGTAACCCAAGCCCATGAGCAGGTTGTAAATGAAGCTGAAGCTATAAAGGATGGAGATTTGTCGGCTAGTACAAACATTGCTCAAGTGCCGCTGAGTGGAGGAGATATGCGGGATAACATGGATGAGGTTGCTGATACCCATGGTTATGAGACTAACATGAATTATGGTTTGCAAAGTGATGAGCAACTACCTATGGACTTCCTCATGCCACCATTTGATGATTTTGATTTTGACCCAAATGGATTTGGATCTATCTAG

Protein sequence

>Msa0413840

MGRKKLKLEYIINKSKRMATFRKRTEGFIYHLYICFSISIMKKASELSTLCGVEVGVIIYGENHGQAEVWPPAIGLERVLHKFESLSELKRNKNMVDLYSFWMQRIEKAKEKYEKAMMENKKKEMTNFIRQFIPTRNYNVGDMSLNDINYLTTLIDENMKEVNQRLDSMVTQAHEQVVNEAEAIKDGDLSASTNIAQVPLSGGDMRDNMDEVADTHGYETNMNYGLQSDEQLPMDFLMPPFDDFDFDPNGFGSI*