Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413880 | XP_003599289.1 | 83.060 | 183 | 31 | 0 | 1 | 183 | 1 | 183 | 3.09e-98 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413880 | sp|Q9FJK3|AGL80_ARATH | 39.623 | 159 | 91 | 2 | 1 | 157 | 1 | 156 | 1.89e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413880 | G7J0M2 | 83.060 | 183 | 31 | 0 | 1 | 183 | 1 | 183 | 1.47e-98 | 292 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0413880 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413880 | MtrunA17_Chr3g0106501 | 83.226 | 155 | 26 | 0 | 29 | 183 | 1 | 155 | 7.80e-83 | 241 |
| Msa0413880 | MtrunA17_Chr3g0107381 | 50.323 | 155 | 76 | 1 | 1 | 155 | 1 | 154 | 6.15e-50 | 160 |
| Msa0413880 | MtrunA17_Chr3g0107461 | 47.771 | 157 | 82 | 0 | 1 | 157 | 1 | 157 | 1.04e-44 | 145 |
| Msa0413880 | MtrunA17_Chr2g0283941 | 43.636 | 165 | 93 | 0 | 1 | 165 | 1 | 165 | 1.22e-42 | 142 |
| Msa0413880 | MtrunA17_Chr3g0106421 | 47.482 | 139 | 73 | 0 | 29 | 167 | 1 | 139 | 1.12e-39 | 134 |
| Msa0413880 | MtrunA17_Chr4g0014321 | 39.634 | 164 | 99 | 0 | 1 | 164 | 1 | 164 | 2.98e-39 | 133 |
| Msa0413880 | MtrunA17_Chr3g0110131 | 42.038 | 157 | 90 | 1 | 1 | 157 | 1 | 156 | 2.54e-37 | 129 |
| Msa0413880 | MtrunA17_Chr3g0107331 | 42.593 | 162 | 86 | 3 | 3 | 161 | 2 | 159 | 4.03e-37 | 126 |
| Msa0413880 | MtrunA17_Chr3g0107361 | 42.038 | 157 | 88 | 2 | 3 | 158 | 2 | 156 | 2.47e-36 | 124 |
| Msa0413880 | MtrunA17_Chr3g0107351 | 42.675 | 157 | 87 | 2 | 3 | 158 | 2 | 156 | 3.77e-36 | 123 |
| Msa0413880 | MtrunA17_Chr8g0351751 | 40.244 | 164 | 96 | 1 | 1 | 162 | 1 | 164 | 8.62e-35 | 122 |
| Msa0413880 | MtrunA17_Chr4g0013041 | 38.312 | 154 | 93 | 1 | 1 | 154 | 1 | 152 | 3.35e-34 | 120 |
| Msa0413880 | MtrunA17_Chr4g0031421 | 43.382 | 136 | 77 | 0 | 29 | 164 | 1 | 136 | 1.19e-33 | 116 |
| Msa0413880 | MtrunA17_Chr3g0105791 | 43.382 | 136 | 77 | 0 | 29 | 164 | 1 | 136 | 1.13e-32 | 114 |
| Msa0413880 | MtrunA17_Chr3g0107341 | 40.764 | 157 | 90 | 2 | 3 | 158 | 2 | 156 | 3.78e-32 | 113 |
| Msa0413880 | MtrunA17_Chr5g0432691 | 37.013 | 154 | 96 | 1 | 1 | 154 | 1 | 153 | 4.67e-32 | 113 |
| Msa0413880 | MtrunA17_Chr4g0014031 | 39.873 | 158 | 95 | 0 | 1 | 158 | 1 | 158 | 2.77e-31 | 113 |
| Msa0413880 | MtrunA17_Chr1g0197321 | 38.608 | 158 | 96 | 1 | 1 | 158 | 1 | 157 | 8.28e-30 | 107 |
| Msa0413880 | MtrunA17_Chr4g0014131 | 37.654 | 162 | 101 | 0 | 1 | 162 | 1 | 162 | 4.06e-27 | 102 |
| Msa0413880 | MtrunA17_Chr2g0296861 | 37.580 | 157 | 93 | 2 | 1 | 155 | 1 | 154 | 5.78e-27 | 100 |
| Msa0413880 | MtrunA17_Chr5g0420351 | 36.875 | 160 | 93 | 3 | 1 | 157 | 1 | 155 | 1.44e-26 | 99.0 |
| Msa0413880 | MtrunA17_Chr2g0296831 | 43.860 | 114 | 64 | 0 | 1 | 114 | 1 | 114 | 3.36e-26 | 97.1 |
| Msa0413880 | MtrunA17_Chr1g0188681 | 35.714 | 154 | 97 | 2 | 1 | 154 | 1 | 152 | 3.62e-26 | 97.8 |
| Msa0413880 | MtrunA17_Chr1g0197461 | 37.975 | 158 | 92 | 4 | 3 | 158 | 2 | 155 | 2.17e-25 | 95.9 |
| Msa0413880 | MtrunA17_Chr4g0014121 | 35.484 | 155 | 100 | 0 | 1 | 155 | 29 | 183 | 3.22e-25 | 96.3 |
| Msa0413880 | MtrunA17_Chr1g0197261 | 34.177 | 158 | 102 | 2 | 1 | 158 | 1 | 156 | 1.42e-24 | 94.0 |
| Msa0413880 | MtrunA17_Chr1g0188651 | 38.312 | 154 | 91 | 2 | 1 | 154 | 1 | 150 | 1.42e-23 | 91.3 |
| Msa0413880 | MtrunA17_Chr1g0193311 | 36.943 | 157 | 97 | 2 | 1 | 157 | 1 | 155 | 5.32e-23 | 89.7 |
| Msa0413880 | MtrunA17_Chr1g0188661 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 4.12e-21 | 85.1 |
| Msa0413880 | MtrunA17_Chr7g0218151 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 6.31e-21 | 84.3 |
| Msa0413880 | MtrunA17_Chr4g0012761 | 34.416 | 154 | 99 | 2 | 1 | 154 | 1 | 152 | 2.49e-19 | 80.1 |
| Msa0413880 | MtrunA17_Chr7g0267601 | 29.060 | 117 | 83 | 0 | 3 | 119 | 6 | 122 | 7.97e-17 | 77.4 |
| Msa0413880 | MtrunA17_Chr4g0008701 | 30.769 | 117 | 81 | 0 | 3 | 119 | 6 | 122 | 2.68e-16 | 75.9 |
| Msa0413880 | MtrunA17_Chr6g0457851 | 32.759 | 116 | 71 | 3 | 1 | 110 | 11 | 125 | 2.28e-15 | 72.8 |
| Msa0413880 | MtrunA17_Chr1g0212151 | 31.858 | 113 | 70 | 3 | 1 | 107 | 1 | 112 | 1.45e-14 | 70.5 |
| Msa0413880 | MtrunA17_Chr6g0449861 | 31.858 | 113 | 70 | 3 | 1 | 107 | 9 | 120 | 3.88e-14 | 69.3 |
| Msa0413880 | MtrunA17_Chr4g0059631 | 28.191 | 188 | 114 | 7 | 1 | 176 | 1 | 179 | 4.18e-14 | 68.2 |
| Msa0413880 | MtrunA17_Chr3g0128721 | 23.718 | 156 | 118 | 1 | 3 | 158 | 6 | 160 | 1.61e-12 | 65.1 |
| Msa0413880 | MtrunA17_Chr6g0449851 | 28.571 | 126 | 83 | 3 | 1 | 120 | 1 | 125 | 6.87e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413880 | AT3G05860.2 | 36.601 | 153 | 92 | 2 | 1 | 151 | 1 | 150 | 8.68e-28 | 103 |
| Msa0413880 | AT5G48670.1 | 39.623 | 159 | 91 | 2 | 1 | 157 | 1 | 156 | 1.93e-27 | 105 |
| Msa0413880 | AT3G05860.3 | 36.364 | 154 | 93 | 2 | 1 | 152 | 1 | 151 | 2.95e-27 | 103 |
| Msa0413880 | AT3G05860.1 | 36.364 | 154 | 93 | 2 | 1 | 152 | 1 | 151 | 2.96e-27 | 103 |
| Msa0413880 | AT1G65330.1 | 33.333 | 156 | 101 | 2 | 3 | 157 | 2 | 155 | 2.99e-24 | 96.3 |
| Msa0413880 | AT1G65300.1 | 39.130 | 115 | 70 | 0 | 3 | 117 | 2 | 116 | 4.43e-24 | 95.9 |
| Msa0413880 | AT1G22590.2 | 31.737 | 167 | 98 | 2 | 1 | 161 | 1 | 157 | 1.18e-23 | 92.0 |
| Msa0413880 | AT5G26650.1 | 37.719 | 114 | 71 | 0 | 4 | 117 | 2 | 115 | 3.54e-22 | 92.0 |
| Msa0413880 | AT5G27960.1 | 36.842 | 114 | 72 | 0 | 4 | 117 | 2 | 115 | 5.21e-22 | 90.9 |
| Msa0413880 | AT2G28700.1 | 33.594 | 128 | 85 | 0 | 1 | 128 | 1 | 128 | 6.93e-22 | 90.9 |
| Msa0413880 | AT5G06500.1 | 32.639 | 144 | 80 | 3 | 1 | 142 | 1 | 129 | 4.19e-21 | 87.4 |
| Msa0413880 | AT1G31630.1 | 35.652 | 115 | 73 | 1 | 3 | 117 | 2 | 115 | 8.11e-20 | 85.5 |
| Msa0413880 | AT5G26630.1 | 34.969 | 163 | 93 | 3 | 1 | 157 | 1 | 156 | 2.58e-19 | 82.0 |
| Msa0413880 | AT5G27810.1 | 42.697 | 89 | 51 | 0 | 29 | 117 | 1 | 89 | 5.23e-19 | 78.6 |
| Msa0413880 | AT1G31640.1 | 34.783 | 115 | 74 | 1 | 3 | 117 | 2 | 115 | 5.04e-17 | 78.2 |
| Msa0413880 | AT2G40210.1 | 37.000 | 100 | 63 | 0 | 1 | 100 | 1 | 100 | 5.12e-16 | 75.1 |
| Msa0413880 | AT5G26580.1 | 32.479 | 117 | 65 | 2 | 1 | 117 | 1 | 103 | 6.60e-15 | 71.6 |
| Msa0413880 | AT2G03710.3 | 42.254 | 71 | 41 | 0 | 1 | 71 | 1 | 71 | 2.55e-11 | 60.1 |
| Msa0413880 | AT5G13790.2 | 42.466 | 73 | 40 | 1 | 1 | 73 | 1 | 71 | 3.91e-11 | 60.5 |
| Msa0413880 | AT5G13790.1 | 42.466 | 73 | 40 | 1 | 1 | 73 | 1 | 71 | 3.98e-11 | 60.5 |
| Msa0413880 | AT1G77980.1 | 36.905 | 84 | 52 | 1 | 1 | 84 | 1 | 83 | 4.38e-11 | 60.8 |
| Msa0413880 | AT1G22130.1 | 38.554 | 83 | 50 | 1 | 1 | 83 | 1 | 82 | 5.11e-11 | 60.8 |
| Msa0413880 | AT2G03710.2 | 42.254 | 71 | 41 | 0 | 1 | 71 | 1 | 71 | 7.61e-11 | 59.7 |
| Msa0413880 | AT2G03710.1 | 42.254 | 71 | 41 | 0 | 1 | 71 | 1 | 71 | 7.75e-11 | 59.7 |
Find 28 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCAAAAGTTGGATTTAA+TGG | 0.132212 | 3_2:-58795221 | Msa0413880:CDS |
| TTCCGTAACTTCATTAGAAT+TGG | 0.312999 | 3_2:+58795270 | None:intergenic |
| AATCCATTAAATCCAACTTT+TGG | 0.339004 | 3_2:+58795218 | None:intergenic |
| GAAGCTAGATAAAATTCATT+TGG | 0.361908 | 3_2:+58795148 | None:intergenic |
| GAGGTTTGGCCTTCTCCAAC+TGG | 0.364214 | 3_2:-58795505 | Msa0413880:CDS |
| GAGCATCCTTTGTGGTATAG+AGG | 0.426750 | 3_2:-58795566 | Msa0413880:CDS |
| ACCATCATGAAGTTGAGGTT+TGG | 0.438425 | 3_2:-58795519 | Msa0413880:CDS |
| GACCAATTCTAATGAAGTTA+CGG | 0.448005 | 3_2:-58795272 | Msa0413880:CDS |
| AACGAATTGAGCATCCTTTG+TGG | 0.463741 | 3_2:-58795574 | Msa0413880:CDS |
| CAATTGAATCCTCTTGAGCT+TGG | 0.465024 | 3_2:+58795194 | None:intergenic |
| ATTGATTAATGAGAAATTGA+AGG | 0.477565 | 3_2:-58795248 | Msa0413880:CDS |
| GGAAAACAAGAAGAAAGAAA+TGG | 0.479640 | 3_2:-58795353 | Msa0413880:CDS |
| GAAGGAAGTCTACCAAAAGT+TGG | 0.485133 | 3_2:-58795230 | Msa0413880:CDS |
| TGAAAACCATCATGAAGTTG+AGG | 0.549600 | 3_2:-58795524 | Msa0413880:CDS |
| GCCAAACCTCAACTTCATGA+TGG | 0.552073 | 3_2:+58795518 | None:intergenic |
| ATCATCAAAATTAAATTCAG+TGG | 0.561119 | 3_2:+58795303 | None:intergenic |
| CACTACTATGGGCAGAAGGA+AGG | 0.561138 | 3_2:-58797009 | None:intergenic |
| AGATCAGTATCACAAACTAA+AGG | 0.570022 | 3_2:-58795377 | Msa0413880:CDS |
| GAGTAGTAAGTGTGTTGTCA+AGG | 0.577943 | 3_2:-58795483 | Msa0413880:CDS |
| CTTACTACTCCAGTTGGAGA+AGG | 0.592421 | 3_2:+58795496 | None:intergenic |
| TCAGTATCACAAACTAAAGG+TGG | 0.593746 | 3_2:-58795374 | Msa0413880:CDS |
| AACACACTTACTACTCCAGT+TGG | 0.596457 | 3_2:+58795490 | None:intergenic |
| TACTATGGGCAGAAGGAAGG+TGG | 0.600474 | 3_2:-58797006 | None:intergenic |
| TCATCACTACTATGGGCAGA+AGG | 0.612227 | 3_2:-58797013 | None:intergenic |
| AATGGATTTCCAAGCTCAAG+AGG | 0.613698 | 3_2:-58795203 | Msa0413880:CDS |
| TAGTCAACAACTCAAAGCGG+AGG | 0.677810 | 3_2:-58796971 | Msa0413880:CDS |
| CACAAGCCTCTATACCACAA+AGG | 0.687096 | 3_2:+58795560 | None:intergenic |
| ACATAGTCAACAACTCAAAG+CGG | 0.715101 | 3_2:-58796974 | Msa0413880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTATGTATAAAAATAAA+TGG | + | chr3_2:58795415-58795434 | None:intergenic | 10.0% |
| !!! | ACTTTTTATTTTATTTCTAA+TGG | + | chr3_2:58795476-58795495 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTATAGATTTG+AGG | - | chr3_2:58796092-58796111 | Msa0413880:intron | 10.0% |
| !!! | ACTTATTTTACTTTTTTTAA+AGG | + | chr3_2:58796203-58796222 | None:intergenic | 10.0% |
| !! | CTTATAAAAAAAAATTCTTA+TGG | - | chr3_2:58796464-58796483 | Msa0413880:intron | 10.0% |
| !! | CAATTATGTATAAAAATAAA+TGG | + | chr3_2:58795415-58795434 | None:intergenic | 10.0% |
| !!! | ACTTTTTATTTTATTTCTAA+TGG | + | chr3_2:58795476-58795495 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTATAGATTTG+AGG | - | chr3_2:58796092-58796111 | Msa0413880:intron | 10.0% |
| !!! | ACTTATTTTACTTTTTTTAA+AGG | + | chr3_2:58796203-58796222 | None:intergenic | 10.0% |
| !! | CTTATAAAAAAAAATTCTTA+TGG | - | chr3_2:58796464-58796483 | Msa0413880:intron | 10.0% |
| !!! | ATTTTCCTTTTTTTTTTAAC+AGG | - | chr3_2:58795683-58795702 | Msa0413880:intron | 15.0% |
| !!! | AATAAGTCTTTTTTTTTTGA+AGG | - | chr3_2:58795939-58795958 | Msa0413880:intron | 15.0% |
| !!! | CGTTCTTTATTTTATAAAAA+AGG | - | chr3_2:58796244-58796263 | Msa0413880:intron | 15.0% |
| !!! | TTATAAAAAAGGTAATTTGT+TGG | - | chr3_2:58796255-58796274 | Msa0413880:intron | 15.0% |
| !!! | ATTTTCCTTTTTTTTTTAAC+AGG | - | chr3_2:58795683-58795702 | Msa0413880:intron | 15.0% |
| !!! | AATAAGTCTTTTTTTTTTGA+AGG | - | chr3_2:58795939-58795958 | Msa0413880:intron | 15.0% |
| !!! | CGTTCTTTATTTTATAAAAA+AGG | - | chr3_2:58796244-58796263 | Msa0413880:intron | 15.0% |
| !!! | TTATAAAAAAGGTAATTTGT+TGG | - | chr3_2:58796255-58796274 | Msa0413880:intron | 15.0% |
| !! | TGATTATAATCTTTGACAAT+CGG | - | chr3_2:58795311-58795330 | Msa0413880:CDS | 20.0% |
| !!! | ACCATTTTTATTACAGAATT+AGG | - | chr3_2:58795566-58795585 | Msa0413880:CDS | 20.0% |
| !!! | CCATTTTTATTACAGAATTA+GGG | - | chr3_2:58795567-58795586 | Msa0413880:CDS | 20.0% |
| !!! | TTTTTTTCATCTGTGAAAAA+TGG | + | chr3_2:58795622-58795641 | None:intergenic | 20.0% |
| !! | CTTATCCTGTTAAAAAAAAA+AGG | + | chr3_2:58795691-58795710 | None:intergenic | 20.0% |
| !! | TCCAAATCAAAATTTCAAAT+TGG | - | chr3_2:58795748-58795767 | Msa0413880:intron | 20.0% |
| !!! | ACCAATTTGAAATTTTGATT+TGG | + | chr3_2:58795752-58795771 | None:intergenic | 20.0% |
| !! | ACATCAAAATTGAATATTGT+TGG | - | chr3_2:58795787-58795806 | Msa0413880:intron | 20.0% |
| !!! | TGAATATTGTTGGATATTTT+TGG | - | chr3_2:58795797-58795816 | Msa0413880:intron | 20.0% |
| !!! | GAATATTGTTGGATATTTTT+GGG | - | chr3_2:58795798-58795817 | Msa0413880:intron | 20.0% |
| !! | TACACAAAATCAAATATGAT+TGG | + | chr3_2:58796070-58796089 | None:intergenic | 20.0% |
| !!! | AACGTTTTTTTAAATTGTTG+AGG | + | chr3_2:58796163-58796182 | None:intergenic | 20.0% |
| !! | ATCATCAAAATTAAATTCAG+TGG | + | chr3_2:58796843-58796862 | None:intergenic | 20.0% |
| !! | ATTGATTAATGAGAAATTGA+AGG | - | chr3_2:58796895-58796914 | Msa0413880:intron | 20.0% |
| !! | TGATTATAATCTTTGACAAT+CGG | - | chr3_2:58795311-58795330 | Msa0413880:CDS | 20.0% |
| !!! | ACCATTTTTATTACAGAATT+AGG | - | chr3_2:58795566-58795585 | Msa0413880:CDS | 20.0% |
| !!! | CCATTTTTATTACAGAATTA+GGG | - | chr3_2:58795567-58795586 | Msa0413880:CDS | 20.0% |
| !!! | TTTTTTTCATCTGTGAAAAA+TGG | + | chr3_2:58795622-58795641 | None:intergenic | 20.0% |
| !! | CTTATCCTGTTAAAAAAAAA+AGG | + | chr3_2:58795691-58795710 | None:intergenic | 20.0% |
| !! | TCCAAATCAAAATTTCAAAT+TGG | - | chr3_2:58795748-58795767 | Msa0413880:intron | 20.0% |
| !!! | ACCAATTTGAAATTTTGATT+TGG | + | chr3_2:58795752-58795771 | None:intergenic | 20.0% |
| !! | ACATCAAAATTGAATATTGT+TGG | - | chr3_2:58795787-58795806 | Msa0413880:intron | 20.0% |
| !!! | TGAATATTGTTGGATATTTT+TGG | - | chr3_2:58795797-58795816 | Msa0413880:intron | 20.0% |
| !!! | GAATATTGTTGGATATTTTT+GGG | - | chr3_2:58795798-58795817 | Msa0413880:intron | 20.0% |
| !! | TACACAAAATCAAATATGAT+TGG | + | chr3_2:58796070-58796089 | None:intergenic | 20.0% |
| !!! | AACGTTTTTTTAAATTGTTG+AGG | + | chr3_2:58796163-58796182 | None:intergenic | 20.0% |
| !! | ATCATCAAAATTAAATTCAG+TGG | + | chr3_2:58796843-58796862 | None:intergenic | 20.0% |
| !! | ATTGATTAATGAGAAATTGA+AGG | - | chr3_2:58796895-58796914 | Msa0413880:intron | 20.0% |
| ! | ACATTCAGAACAAGAAAAAA+TGG | - | chr3_2:58795198-58795217 | Msa0413880:CDS | 25.0% |
| ! | CAAAGATTATAATCATAGTG+TGG | + | chr3_2:58795306-58795325 | None:intergenic | 25.0% |
| ! | CCCTAATTCTGTAATAAAAA+TGG | + | chr3_2:58795570-58795589 | None:intergenic | 25.0% |
| ! | AAATCGTGTAAAATCGTTAA+TGG | - | chr3_2:58795639-58795658 | Msa0413880:intron | 25.0% |
| !!! | GTTTTTTTAAATTGTTGAGG+TGG | + | chr3_2:58796160-58796179 | None:intergenic | 25.0% |
| !!! | TAAAAAAGGTAATTTGTTGG+TGG | - | chr3_2:58796258-58796277 | Msa0413880:intron | 25.0% |
| ! | TAAACAATTAGGGTAAGTTA+CGG | + | chr3_2:58796287-58796306 | None:intergenic | 25.0% |
| !! | AATCCATTAAATCCAACTTT+TGG | + | chr3_2:58796928-58796947 | None:intergenic | 25.0% |
| ! | GAAGCTAGATAAAATTCATT+TGG | + | chr3_2:58796998-58797017 | None:intergenic | 25.0% |
| ! | ACATTCAGAACAAGAAAAAA+TGG | - | chr3_2:58795198-58795217 | Msa0413880:CDS | 25.0% |
| ! | CAAAGATTATAATCATAGTG+TGG | + | chr3_2:58795306-58795325 | None:intergenic | 25.0% |
| ! | CCCTAATTCTGTAATAAAAA+TGG | + | chr3_2:58795570-58795589 | None:intergenic | 25.0% |
| ! | AAATCGTGTAAAATCGTTAA+TGG | - | chr3_2:58795639-58795658 | Msa0413880:intron | 25.0% |
| !!! | GTTTTTTTAAATTGTTGAGG+TGG | + | chr3_2:58796160-58796179 | None:intergenic | 25.0% |
| !!! | TAAAAAAGGTAATTTGTTGG+TGG | - | chr3_2:58796258-58796277 | Msa0413880:intron | 25.0% |
| ! | TAAACAATTAGGGTAAGTTA+CGG | + | chr3_2:58796287-58796306 | None:intergenic | 25.0% |
| !! | AATCCATTAAATCCAACTTT+TGG | + | chr3_2:58796928-58796947 | None:intergenic | 25.0% |
| ! | GAAGCTAGATAAAATTCATT+TGG | + | chr3_2:58796998-58797017 | None:intergenic | 25.0% |
| ! | TACAGAATTAGGGTAAGTTT+TGG | - | chr3_2:58795577-58795596 | Msa0413880:CDS | 30.0% |
| ATAAAGAACGAAAATCGTCA+TGG | + | chr3_2:58796234-58796253 | None:intergenic | 30.0% | |
| !!! | CCTTGTTCTTTTTTCATGTT+CGG | + | chr3_2:58796699-58796718 | None:intergenic | 30.0% |
| AGATCAGTATCACAAACTAA+AGG | - | chr3_2:58796766-58796785 | Msa0413880:intron | 30.0% | |
| GGAAAACAAGAAGAAAGAAA+TGG | - | chr3_2:58796790-58796809 | Msa0413880:intron | 30.0% | |
| GACCAATTCTAATGAAGTTA+CGG | - | chr3_2:58796871-58796890 | Msa0413880:intron | 30.0% | |
| TTCCGTAACTTCATTAGAAT+TGG | + | chr3_2:58796876-58796895 | None:intergenic | 30.0% | |
| CTACCAAAAGTTGGATTTAA+TGG | - | chr3_2:58796922-58796941 | Msa0413880:intron | 30.0% | |
| ! | TACAGAATTAGGGTAAGTTT+TGG | - | chr3_2:58795577-58795596 | Msa0413880:CDS | 30.0% |
| ATAAAGAACGAAAATCGTCA+TGG | + | chr3_2:58796234-58796253 | None:intergenic | 30.0% | |
| !!! | CCTTGTTCTTTTTTCATGTT+CGG | + | chr3_2:58796699-58796718 | None:intergenic | 30.0% |
| AGATCAGTATCACAAACTAA+AGG | - | chr3_2:58796766-58796785 | Msa0413880:intron | 30.0% | |
| GGAAAACAAGAAGAAAGAAA+TGG | - | chr3_2:58796790-58796809 | Msa0413880:intron | 30.0% | |
| GACCAATTCTAATGAAGTTA+CGG | - | chr3_2:58796871-58796890 | Msa0413880:intron | 30.0% | |
| TTCCGTAACTTCATTAGAAT+TGG | + | chr3_2:58796876-58796895 | None:intergenic | 30.0% | |
| CTACCAAAAGTTGGATTTAA+TGG | - | chr3_2:58796922-58796941 | Msa0413880:intron | 30.0% | |
| ACATAGTCAACAACTCAAAG+CGG | - | chr3_2:58795169-58795188 | Msa0413880:CDS | 35.0% | |
| TAACTCATAAAGATGCCTTG+GGG | + | chr3_2:58795343-58795362 | None:intergenic | 35.0% | |
| CTAACTCATAAAGATGCCTT+GGG | + | chr3_2:58795344-58795363 | None:intergenic | 35.0% | |
| ACCCAATATTAATCGCATAC+CGG | + | chr3_2:58795378-58795397 | None:intergenic | 35.0% | |
| TTAACAGGATAAGCTGATGT+TGG | - | chr3_2:58795698-58795717 | Msa0413880:intron | 35.0% | |
| TGAAAACCATCATGAAGTTG+AGG | - | chr3_2:58796619-58796638 | Msa0413880:intron | 35.0% | |
| CCGAACATGAAAAAAGAACA+AGG | - | chr3_2:58796696-58796715 | Msa0413880:intron | 35.0% | |
| TGAAAAAAGAACAAGGATGC+TGG | - | chr3_2:58796703-58796722 | Msa0413880:intron | 35.0% | |
| TCAGTATCACAAACTAAAGG+TGG | - | chr3_2:58796769-58796788 | Msa0413880:intron | 35.0% | |
| ACATAGTCAACAACTCAAAG+CGG | - | chr3_2:58795169-58795188 | Msa0413880:CDS | 35.0% | |
| TAACTCATAAAGATGCCTTG+GGG | + | chr3_2:58795343-58795362 | None:intergenic | 35.0% | |
| CTAACTCATAAAGATGCCTT+GGG | + | chr3_2:58795344-58795363 | None:intergenic | 35.0% | |
| ACCCAATATTAATCGCATAC+CGG | + | chr3_2:58795378-58795397 | None:intergenic | 35.0% | |
| TTAACAGGATAAGCTGATGT+TGG | - | chr3_2:58795698-58795717 | Msa0413880:intron | 35.0% | |
| TGAAAACCATCATGAAGTTG+AGG | - | chr3_2:58796619-58796638 | Msa0413880:intron | 35.0% | |
| CCGAACATGAAAAAAGAACA+AGG | - | chr3_2:58796696-58796715 | Msa0413880:intron | 35.0% | |
| TGAAAAAAGAACAAGGATGC+TGG | - | chr3_2:58796703-58796722 | Msa0413880:intron | 35.0% | |
| TCAGTATCACAAACTAAAGG+TGG | - | chr3_2:58796769-58796788 | Msa0413880:intron | 35.0% | |
| CCTAACTCATAAAGATGCCT+TGG | + | chr3_2:58795345-58795364 | None:intergenic | 40.0% | |
| ! | CCAAGGCATCTTTATGAGTT+AGG | - | chr3_2:58795342-58795361 | Msa0413880:CDS | 40.0% |
| AGGCATCTTTATGAGTTAGG+CGG | - | chr3_2:58795345-58795364 | Msa0413880:CDS | 40.0% | |
| ACCCGGTATGCGATTAATAT+TGG | - | chr3_2:58795373-58795392 | Msa0413880:CDS | 40.0% | |
| CCCAATATTAATCGCATACC+GGG | + | chr3_2:58795377-58795396 | None:intergenic | 40.0% | |
| CCCGGTATGCGATTAATATT+GGG | - | chr3_2:58795374-58795393 | Msa0413880:CDS | 40.0% | |
| TGAAAAATGGCCCAAGTCAT+TGG | + | chr3_2:58795609-58795628 | None:intergenic | 40.0% | |
| AACGAATTGAGCATCCTTTG+TGG | - | chr3_2:58796569-58796588 | Msa0413880:intron | 40.0% | |
| ACCATCATGAAGTTGAGGTT+TGG | - | chr3_2:58796624-58796643 | Msa0413880:intron | 40.0% | |
| AACACACTTACTACTCCAGT+TGG | + | chr3_2:58796656-58796675 | None:intergenic | 40.0% | |
| GAGTAGTAAGTGTGTTGTCA+AGG | - | chr3_2:58796660-58796679 | Msa0413880:intron | 40.0% | |
| GAAGGAAGTCTACCAAAAGT+TGG | - | chr3_2:58796913-58796932 | Msa0413880:intron | 40.0% | |
| ! | AATGGATTTCCAAGCTCAAG+AGG | - | chr3_2:58796940-58796959 | Msa0413880:intron | 40.0% |
| CAATTGAATCCTCTTGAGCT+TGG | + | chr3_2:58796952-58796971 | None:intergenic | 40.0% | |
| CCTAACTCATAAAGATGCCT+TGG | + | chr3_2:58795345-58795364 | None:intergenic | 40.0% | |
| ! | CCAAGGCATCTTTATGAGTT+AGG | - | chr3_2:58795342-58795361 | Msa0413880:CDS | 40.0% |
| AGGCATCTTTATGAGTTAGG+CGG | - | chr3_2:58795345-58795364 | Msa0413880:CDS | 40.0% | |
| ACCCGGTATGCGATTAATAT+TGG | - | chr3_2:58795373-58795392 | Msa0413880:CDS | 40.0% | |
| CCCAATATTAATCGCATACC+GGG | + | chr3_2:58795377-58795396 | None:intergenic | 40.0% | |
| CCCGGTATGCGATTAATATT+GGG | - | chr3_2:58795374-58795393 | Msa0413880:CDS | 40.0% | |
| TGAAAAATGGCCCAAGTCAT+TGG | + | chr3_2:58795609-58795628 | None:intergenic | 40.0% | |
| AACGAATTGAGCATCCTTTG+TGG | - | chr3_2:58796569-58796588 | Msa0413880:intron | 40.0% | |
| ACCATCATGAAGTTGAGGTT+TGG | - | chr3_2:58796624-58796643 | Msa0413880:intron | 40.0% | |
| AACACACTTACTACTCCAGT+TGG | + | chr3_2:58796656-58796675 | None:intergenic | 40.0% | |
| GAGTAGTAAGTGTGTTGTCA+AGG | - | chr3_2:58796660-58796679 | Msa0413880:intron | 40.0% | |
| GAAGGAAGTCTACCAAAAGT+TGG | - | chr3_2:58796913-58796932 | Msa0413880:intron | 40.0% | |
| ! | AATGGATTTCCAAGCTCAAG+AGG | - | chr3_2:58796940-58796959 | Msa0413880:intron | 40.0% |
| CAATTGAATCCTCTTGAGCT+TGG | + | chr3_2:58796952-58796971 | None:intergenic | 40.0% | |
| TAGTCAACAACTCAAAGCGG+AGG | - | chr3_2:58795172-58795191 | Msa0413880:CDS | 45.0% | |
| TTTGGCTGTCACCAATGACT+TGG | - | chr3_2:58795595-58795614 | Msa0413880:intron | 45.0% | |
| TTGGCTGTCACCAATGACTT+GGG | - | chr3_2:58795596-58795615 | Msa0413880:intron | 45.0% | |
| GAGCATCCTTTGTGGTATAG+AGG | - | chr3_2:58796577-58796596 | Msa0413880:intron | 45.0% | |
| CACAAGCCTCTATACCACAA+AGG | + | chr3_2:58796586-58796605 | None:intergenic | 45.0% | |
| GCCAAACCTCAACTTCATGA+TGG | + | chr3_2:58796628-58796647 | None:intergenic | 45.0% | |
| CTTACTACTCCAGTTGGAGA+AGG | + | chr3_2:58796650-58796669 | None:intergenic | 45.0% | |
| TAGTCAACAACTCAAAGCGG+AGG | - | chr3_2:58795172-58795191 | Msa0413880:CDS | 45.0% | |
| TTTGGCTGTCACCAATGACT+TGG | - | chr3_2:58795595-58795614 | Msa0413880:intron | 45.0% | |
| TTGGCTGTCACCAATGACTT+GGG | - | chr3_2:58795596-58795615 | Msa0413880:intron | 45.0% | |
| GAGCATCCTTTGTGGTATAG+AGG | - | chr3_2:58796577-58796596 | Msa0413880:intron | 45.0% | |
| CACAAGCCTCTATACCACAA+AGG | + | chr3_2:58796586-58796605 | None:intergenic | 45.0% | |
| GCCAAACCTCAACTTCATGA+TGG | + | chr3_2:58796628-58796647 | None:intergenic | 45.0% | |
| CTTACTACTCCAGTTGGAGA+AGG | + | chr3_2:58796650-58796669 | None:intergenic | 45.0% | |
| !!! | TAAAAAGTATTTAAAAAATT+AGG | - | chr3_2:58795488-58795507 | Msa0413880:CDS | 5.0% |
| !!! | AAAAAGTATTTAAAAAATTA+GGG | - | chr3_2:58795489-58795508 | Msa0413880:CDS | 5.0% |
| !!! | TATTTTATATTAAACAATTA+GGG | + | chr3_2:58796297-58796316 | None:intergenic | 5.0% |
| !!! | ATATTTTATATTAAACAATT+AGG | + | chr3_2:58796298-58796317 | None:intergenic | 5.0% |
| !!! | TTATATATATATTTTTCAAT+AGG | - | chr3_2:58796530-58796549 | Msa0413880:intron | 5.0% |
| !!! | TATATATATATTTTTCAATA+GGG | - | chr3_2:58796531-58796550 | Msa0413880:intron | 5.0% |
| !!! | TAAAAAGTATTTAAAAAATT+AGG | - | chr3_2:58795488-58795507 | Msa0413880:CDS | 5.0% |
| !!! | AAAAAGTATTTAAAAAATTA+GGG | - | chr3_2:58795489-58795508 | Msa0413880:CDS | 5.0% |
| !!! | TATTTTATATTAAACAATTA+GGG | + | chr3_2:58796297-58796316 | None:intergenic | 5.0% |
| !!! | ATATTTTATATTAAACAATT+AGG | + | chr3_2:58796298-58796317 | None:intergenic | 5.0% |
| !!! | TTATATATATATTTTTCAAT+AGG | - | chr3_2:58796530-58796549 | Msa0413880:intron | 5.0% |
| !!! | TATATATATATTTTTCAATA+GGG | - | chr3_2:58796531-58796550 | Msa0413880:intron | 5.0% |
| TGAGTTAGGCGGTTGAGACC+CGG | - | chr3_2:58795356-58795375 | Msa0413880:CDS | 55.0% | |
| ! | GAGGTTTGGCCTTCTCCAAC+TGG | - | chr3_2:58796638-58796657 | Msa0413880:intron | 55.0% |
| TGAGTTAGGCGGTTGAGACC+CGG | - | chr3_2:58795356-58795375 | Msa0413880:CDS | 55.0% | |
| ! | GAGGTTTGGCCTTCTCCAAC+TGG | - | chr3_2:58796638-58796657 | Msa0413880:intron | 55.0% |
| GACAATCGGTGTGTGCCCCA+AGG | - | chr3_2:58795325-58795344 | Msa0413880:CDS | 60.0% | |
| GACAATCGGTGTGTGCCCCA+AGG | - | chr3_2:58795325-58795344 | Msa0413880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 58795141 | 58797024 | 58795141 | ID=Msa0413880;Name=Msa0413880 |
| chr3_2 | mRNA | 58795141 | 58797024 | 58795141 | ID=Msa0413880-mRNA-1;Parent=Msa0413880;Name=Msa0413880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0|2|0|183 |
| chr3_2 | exon | 58796946 | 58797024 | 58796946 | ID=Msa0413880-mRNA-1:exon:12209;Parent=Msa0413880-mRNA-1 |
| chr3_2 | exon | 58795141 | 58795613 | 58795141 | ID=Msa0413880-mRNA-1:exon:12208;Parent=Msa0413880-mRNA-1 |
| chr3_2 | CDS | 58796946 | 58797024 | 58796946 | ID=Msa0413880-mRNA-1:cds;Parent=Msa0413880-mRNA-1 |
| chr3_2 | CDS | 58795141 | 58795613 | 58795141 | ID=Msa0413880-mRNA-1:cds;Parent=Msa0413880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
