Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416370 | KEH34778.1 | 93.151 | 73 | 5 | 0 | 11 | 83 | 2 | 74 | 3.52e-41 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416370 | sp|Q9M047|WLI2B_ARATH | 89.062 | 64 | 7 | 0 | 13 | 76 | 119 | 182 | 2.82e-35 | 121 |
| Msa0416370 | sp|Q9M047|WLI2B_ARATH | 48.571 | 70 | 35 | 1 | 13 | 82 | 21 | 89 | 3.60e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416370 | A0A072V070 | 93.151 | 73 | 5 | 0 | 11 | 83 | 2 | 74 | 1.68e-41 | 139 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0416370 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416370 | MtrunA17_Chr3g0113051 | 95.775 | 71 | 3 | 0 | 13 | 83 | 121 | 191 | 3.22e-43 | 138 |
| Msa0416370 | MtrunA17_Chr3g0113051 | 43.396 | 53 | 30 | 0 | 13 | 65 | 21 | 73 | 5.02e-11 | 55.8 |
| Msa0416370 | MtrunA17_Chr8g0386501 | 66.129 | 62 | 21 | 0 | 13 | 74 | 113 | 174 | 2.67e-24 | 90.9 |
| Msa0416370 | MtrunA17_Chr8g0349391 | 62.712 | 59 | 22 | 0 | 13 | 71 | 115 | 173 | 8.18e-24 | 89.4 |
| Msa0416370 | MtrunA17_Chr8g0349391 | 49.206 | 63 | 32 | 0 | 3 | 65 | 11 | 73 | 8.63e-15 | 65.9 |
| Msa0416370 | MtrunA17_Chr7g0247111 | 58.065 | 62 | 26 | 0 | 13 | 74 | 117 | 178 | 2.66e-23 | 88.2 |
| Msa0416370 | MtrunA17_Chr7g0247111 | 41.429 | 70 | 41 | 0 | 3 | 72 | 11 | 80 | 4.38e-13 | 61.6 |
| Msa0416370 | MtrunA17_Chr1g0152431 | 64.286 | 56 | 20 | 0 | 12 | 67 | 120 | 175 | 1.91e-18 | 75.1 |
| Msa0416370 | MtrunA17_Chr4g0059371 | 49.180 | 61 | 31 | 0 | 13 | 73 | 121 | 181 | 1.22e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416370 | AT3G55770.3 | 89.062 | 64 | 7 | 0 | 13 | 76 | 119 | 182 | 2.86e-36 | 121 |
| Msa0416370 | AT3G55770.3 | 48.571 | 70 | 35 | 1 | 13 | 82 | 21 | 89 | 3.66e-15 | 67.0 |
| Msa0416370 | AT3G55770.5 | 89.062 | 64 | 7 | 0 | 13 | 76 | 119 | 182 | 2.86e-36 | 121 |
| Msa0416370 | AT3G55770.5 | 48.571 | 70 | 35 | 1 | 13 | 82 | 21 | 89 | 3.66e-15 | 67.0 |
| Msa0416370 | AT3G55770.2 | 89.062 | 64 | 7 | 0 | 13 | 76 | 119 | 182 | 2.86e-36 | 121 |
| Msa0416370 | AT3G55770.2 | 48.571 | 70 | 35 | 1 | 13 | 82 | 21 | 89 | 3.66e-15 | 67.0 |
| Msa0416370 | AT3G55770.1 | 89.062 | 64 | 7 | 0 | 13 | 76 | 119 | 182 | 2.86e-36 | 121 |
| Msa0416370 | AT3G55770.1 | 48.571 | 70 | 35 | 1 | 13 | 82 | 21 | 89 | 3.66e-15 | 67.0 |
| Msa0416370 | AT2G39900.1 | 91.935 | 62 | 5 | 0 | 13 | 74 | 120 | 181 | 8.63e-36 | 120 |
| Msa0416370 | AT2G39900.1 | 40.845 | 71 | 42 | 0 | 12 | 82 | 20 | 90 | 2.50e-13 | 62.4 |
| Msa0416370 | AT3G55770.7 | 90.323 | 62 | 6 | 0 | 15 | 76 | 155 | 216 | 3.80e-35 | 119 |
| Msa0416370 | AT3G55770.7 | 47.887 | 71 | 36 | 1 | 12 | 82 | 20 | 89 | 7.09e-15 | 67.0 |
| Msa0416370 | AT3G61230.1 | 60.000 | 60 | 24 | 0 | 13 | 72 | 118 | 177 | 2.14e-23 | 89.0 |
| Msa0416370 | AT3G61230.1 | 42.029 | 69 | 40 | 0 | 3 | 71 | 12 | 80 | 2.02e-14 | 65.5 |
| Msa0416370 | AT2G45800.2 | 56.716 | 67 | 29 | 0 | 13 | 79 | 86 | 152 | 2.50e-22 | 85.5 |
| Msa0416370 | AT2G45800.1 | 56.716 | 67 | 29 | 0 | 13 | 79 | 117 | 183 | 4.02e-22 | 85.9 |
| Msa0416370 | AT2G45800.1 | 46.032 | 63 | 34 | 0 | 3 | 65 | 11 | 73 | 1.48e-14 | 65.9 |
| Msa0416370 | AT1G01780.1 | 46.970 | 66 | 35 | 0 | 13 | 78 | 115 | 180 | 2.71e-20 | 80.5 |
| Msa0416370 | AT1G01780.1 | 45.283 | 53 | 29 | 0 | 13 | 65 | 21 | 73 | 3.01e-13 | 62.0 |
| Msa0416370 | AT1G10200.2 | 63.636 | 55 | 20 | 0 | 13 | 67 | 79 | 133 | 2.89e-18 | 73.9 |
| Msa0416370 | AT1G10200.1 | 63.636 | 55 | 20 | 0 | 13 | 67 | 121 | 175 | 6.89e-18 | 73.9 |
| Msa0416370 | AT3G55770.6 | 48.571 | 70 | 35 | 1 | 13 | 82 | 21 | 89 | 3.69e-16 | 68.2 |
| Msa0416370 | AT3G55770.4 | 48.571 | 70 | 35 | 1 | 13 | 82 | 21 | 89 | 6.43e-16 | 67.8 |
Find 17 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATAATTTGATGGAGTTAT+AGG | 0.257991 | 3_2:+63175081 | None:intergenic |
| GGCACCAACATTCAAGATTC+TGG | 0.320266 | 3_2:+63174943 | None:intergenic |
| CATAATTTGATGGAGTTATA+GGG | 0.324721 | 3_2:+63175082 | None:intergenic |
| TGAACACTTGAAACATGATT+TGG | 0.352807 | 3_2:+63175116 | None:intergenic |
| TCAAATTATGCAGCCCTTGA+AGG | 0.395217 | 3_2:-63175069 | Msa0416370:CDS |
| TGCAGTACAAAATGCCTTCA+AGG | 0.396606 | 3_2:+63175055 | None:intergenic |
| TCAAGGGCTGCATAATTTGA+TGG | 0.397175 | 3_2:+63175072 | None:intergenic |
| GAACACTTGAAACATGATTT+GGG | 0.456736 | 3_2:+63175117 | None:intergenic |
| GTAGGTAACAGTCGAAAGCC+AGG | 0.532163 | 3_2:-63175145 | Msa0416370:intron |
| CTTGAAACATGATTTGGGAT+AGG | 0.554637 | 3_2:+63175122 | None:intergenic |
| AACATGATTTGGGATAGGCC+TGG | 0.600433 | 3_2:+63175127 | None:intergenic |
| GCAGTACAAAATGCCTTCAA+GGG | 0.612938 | 3_2:+63175056 | None:intergenic |
| TCATGTTTCAAGTGTTCACA+CGG | 0.626317 | 3_2:-63175111 | Msa0416370:CDS |
| TAGCACACTAAATACAAGCT+CGG | 0.642339 | 3_2:+63176495 | None:intergenic |
| AGCTTGACAACAATGAGAGG+AGG | 0.645458 | 3_2:-63176519 | Msa0416370:CDS |
| AGAAGCTTGACAACAATGAG+AGG | 0.652052 | 3_2:-63176522 | Msa0416370:CDS |
| TGTTTCAAGTGTTCACACGG+AGG | 0.708270 | 3_2:-63175108 | Msa0416370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTACATATCAACAAAAA+GGG | + | chr3_2:63175958-63175977 | None:intergenic | 15.0% |
| !! | TTAATTACATATCAACAAAA+AGG | + | chr3_2:63175959-63175978 | None:intergenic | 15.0% |
| !! | TAATTACATATCAACAAAAA+GGG | + | chr3_2:63175958-63175977 | None:intergenic | 15.0% |
| !! | TTAATTACATATCAACAAAA+AGG | + | chr3_2:63175959-63175978 | None:intergenic | 15.0% |
| !!! | ACTATTTCAGCAATTTTTTT+TGG | - | chr3_2:63175060-63175079 | Msa0416370:CDS | 20.0% |
| !! | TCAGCATAATAAAAAAAACT+TGG | + | chr3_2:63175132-63175151 | None:intergenic | 20.0% |
| !!! | GTAGAACAAAAACATAATTT+TGG | + | chr3_2:63175477-63175496 | None:intergenic | 20.0% |
| !!! | AACTAAAAGTACCTTTTAAA+TGG | + | chr3_2:63176143-63176162 | None:intergenic | 20.0% |
| !! | AGTAATTAGATTTACTCATT+CGG | + | chr3_2:63176231-63176250 | None:intergenic | 20.0% |
| !! | ATATATCTTATTCTGAATGT+AGG | - | chr3_2:63176320-63176339 | Msa0416370:intron | 20.0% |
| !!! | ACTATTTCAGCAATTTTTTT+TGG | - | chr3_2:63175060-63175079 | Msa0416370:CDS | 20.0% |
| !! | TCAGCATAATAAAAAAAACT+TGG | + | chr3_2:63175132-63175151 | None:intergenic | 20.0% |
| !!! | GTAGAACAAAAACATAATTT+TGG | + | chr3_2:63175477-63175496 | None:intergenic | 20.0% |
| !!! | AACTAAAAGTACCTTTTAAA+TGG | + | chr3_2:63176143-63176162 | None:intergenic | 20.0% |
| !! | AGTAATTAGATTTACTCATT+CGG | + | chr3_2:63176231-63176250 | None:intergenic | 20.0% |
| !! | ATATATCTTATTCTGAATGT+AGG | - | chr3_2:63176320-63176339 | Msa0416370:intron | 20.0% |
| ! | CTATTTAATGTTCTCATGTA+TGG | - | chr3_2:63175199-63175218 | Msa0416370:intron | 25.0% |
| ! | TACAATGTCAAACTCAATAA+AGG | - | chr3_2:63175320-63175339 | Msa0416370:intron | 25.0% |
| ! | ACAATGTCAAACTCAATAAA+GGG | - | chr3_2:63175321-63175340 | Msa0416370:intron | 25.0% |
| !! | TTTTACTTGGAAGTTTTTCA+AGG | - | chr3_2:63175530-63175549 | Msa0416370:intron | 25.0% |
| !! | TATCTAGTCCTGTAATTTTA+AGG | + | chr3_2:63175559-63175578 | None:intergenic | 25.0% |
| ! | AAAAAAAGTTAACTTTGAGC+AGG | - | chr3_2:63175850-63175869 | Msa0416370:intron | 25.0% |
| !! | TTTTAGTAGAAACCAACATT+TGG | + | chr3_2:63175923-63175942 | None:intergenic | 25.0% |
| ! | ATATCAACAAAAAGGGAAAA+GGG | + | chr3_2:63175951-63175970 | None:intergenic | 25.0% |
| ! | AAATTTGTATGATCCTCAAA+AGG | - | chr3_2:63176100-63176119 | Msa0416370:intron | 25.0% |
| ! | AACTGCATAAAATTGAAGAT+TGG | + | chr3_2:63176196-63176215 | None:intergenic | 25.0% |
| ! | GTAATTAGATTTACTCATTC+GGG | + | chr3_2:63176230-63176249 | None:intergenic | 25.0% |
| ! | CATAATTTGATGGAGTTATA+GGG | + | chr3_2:63176404-63176423 | None:intergenic | 25.0% |
| ! | CTATTTAATGTTCTCATGTA+TGG | - | chr3_2:63175199-63175218 | Msa0416370:intron | 25.0% |
| ! | TACAATGTCAAACTCAATAA+AGG | - | chr3_2:63175320-63175339 | Msa0416370:intron | 25.0% |
| ! | ACAATGTCAAACTCAATAAA+GGG | - | chr3_2:63175321-63175340 | Msa0416370:intron | 25.0% |
| !! | TTTTACTTGGAAGTTTTTCA+AGG | - | chr3_2:63175530-63175549 | Msa0416370:intron | 25.0% |
| !! | TATCTAGTCCTGTAATTTTA+AGG | + | chr3_2:63175559-63175578 | None:intergenic | 25.0% |
| ! | AAAAAAAGTTAACTTTGAGC+AGG | - | chr3_2:63175850-63175869 | Msa0416370:intron | 25.0% |
| !! | TTTTAGTAGAAACCAACATT+TGG | + | chr3_2:63175923-63175942 | None:intergenic | 25.0% |
| ! | ATATCAACAAAAAGGGAAAA+GGG | + | chr3_2:63175951-63175970 | None:intergenic | 25.0% |
| ! | AAATTTGTATGATCCTCAAA+AGG | - | chr3_2:63176100-63176119 | Msa0416370:intron | 25.0% |
| ! | AACTGCATAAAATTGAAGAT+TGG | + | chr3_2:63176196-63176215 | None:intergenic | 25.0% |
| ! | GTAATTAGATTTACTCATTC+GGG | + | chr3_2:63176230-63176249 | None:intergenic | 25.0% |
| ! | CATAATTTGATGGAGTTATA+GGG | + | chr3_2:63176404-63176423 | None:intergenic | 25.0% |
| TTATGCTGAATATAGTTTCC+TGG | - | chr3_2:63175143-63175162 | Msa0416370:CDS | 30.0% | |
| ! | AGTATTATTTCTTATGAGCC+AGG | + | chr3_2:63175164-63175183 | None:intergenic | 30.0% |
| !!! | ATTGGTTTGGTTCCTTTTTT+AGG | - | chr3_2:63175266-63175285 | Msa0416370:intron | 30.0% |
| AATAAAGGGTAGAATTGTTC+AGG | - | chr3_2:63175335-63175354 | Msa0416370:intron | 30.0% | |
| ! | CACTCTTTTATTAGTACGAA+TGG | + | chr3_2:63175386-63175405 | None:intergenic | 30.0% |
| ! | AATAAAAGAGTGCAAGTTGA+TGG | - | chr3_2:63175394-63175413 | Msa0416370:intron | 30.0% |
| ! | ATCAGTAGATTTTCAGCTAT+AGG | - | chr3_2:63175601-63175620 | Msa0416370:intron | 30.0% |
| !! | TTTGGTGTTCCTTATATATG+CGG | - | chr3_2:63175734-63175753 | Msa0416370:intron | 30.0% |
| CATATCAACAAAAAGGGAAA+AGG | + | chr3_2:63175952-63175971 | None:intergenic | 30.0% | |
| AACAAATTAACATTCATCGC+AGG | + | chr3_2:63176043-63176062 | None:intergenic | 30.0% | |
| !!! | TTAGTTCTGTTTTACTCCTA+TGG | - | chr3_2:63176157-63176176 | Msa0416370:intron | 30.0% |
| ! | TATAAATCTGCAGTTTTGCA+CGG | - | chr3_2:63176250-63176269 | Msa0416370:intron | 30.0% |
| GAACACTTGAAACATGATTT+GGG | + | chr3_2:63176369-63176388 | None:intergenic | 30.0% | |
| TGAACACTTGAAACATGATT+TGG | + | chr3_2:63176370-63176389 | None:intergenic | 30.0% | |
| GCATAATTTGATGGAGTTAT+AGG | + | chr3_2:63176405-63176424 | None:intergenic | 30.0% | |
| TTATGCTGAATATAGTTTCC+TGG | - | chr3_2:63175143-63175162 | Msa0416370:CDS | 30.0% | |
| ! | AGTATTATTTCTTATGAGCC+AGG | + | chr3_2:63175164-63175183 | None:intergenic | 30.0% |
| !!! | ATTGGTTTGGTTCCTTTTTT+AGG | - | chr3_2:63175266-63175285 | Msa0416370:intron | 30.0% |
| AATAAAGGGTAGAATTGTTC+AGG | - | chr3_2:63175335-63175354 | Msa0416370:intron | 30.0% | |
| ! | CACTCTTTTATTAGTACGAA+TGG | + | chr3_2:63175386-63175405 | None:intergenic | 30.0% |
| ! | AATAAAAGAGTGCAAGTTGA+TGG | - | chr3_2:63175394-63175413 | Msa0416370:intron | 30.0% |
| ! | ATCAGTAGATTTTCAGCTAT+AGG | - | chr3_2:63175601-63175620 | Msa0416370:intron | 30.0% |
| !! | TTTGGTGTTCCTTATATATG+CGG | - | chr3_2:63175734-63175753 | Msa0416370:intron | 30.0% |
| CATATCAACAAAAAGGGAAA+AGG | + | chr3_2:63175952-63175971 | None:intergenic | 30.0% | |
| AACAAATTAACATTCATCGC+AGG | + | chr3_2:63176043-63176062 | None:intergenic | 30.0% | |
| !!! | TTAGTTCTGTTTTACTCCTA+TGG | - | chr3_2:63176157-63176176 | Msa0416370:intron | 30.0% |
| ! | TATAAATCTGCAGTTTTGCA+CGG | - | chr3_2:63176250-63176269 | Msa0416370:intron | 30.0% |
| GAACACTTGAAACATGATTT+GGG | + | chr3_2:63176369-63176388 | None:intergenic | 30.0% | |
| TGAACACTTGAAACATGATT+TGG | + | chr3_2:63176370-63176389 | None:intergenic | 30.0% | |
| GCATAATTTGATGGAGTTAT+AGG | + | chr3_2:63176405-63176424 | None:intergenic | 30.0% | |
| TAGCACACTAAATACAAGCT+CGG | + | chr3_2:63174991-63175010 | None:intergenic | 35.0% | |
| CCATTTGATCCTCCTAAAAA+AGG | + | chr3_2:63175281-63175300 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTAGGAGGATCAAA+TGG | - | chr3_2:63175278-63175297 | Msa0416370:intron | 35.0% |
| !! | TTTTTAGGAGGATCAAATGG+TGG | - | chr3_2:63175281-63175300 | Msa0416370:intron | 35.0% |
| CATCGTTAATTATGTGACCA+GGG | - | chr3_2:63175427-63175446 | Msa0416370:intron | 35.0% | |
| !! | CTAGTCCTGTAATTTTAAGG+AGG | + | chr3_2:63175556-63175575 | None:intergenic | 35.0% |
| TTAGAGTAAGTACGTGGATT+AGG | - | chr3_2:63175630-63175649 | Msa0416370:intron | 35.0% | |
| !!! | GTTGTTTTTTTAGCCTGCTT+GGG | - | chr3_2:63175710-63175729 | Msa0416370:intron | 35.0% |
| !! | GATGAGGAGTACCATTTAAA+AGG | - | chr3_2:63176129-63176148 | Msa0416370:intron | 35.0% |
| TGGAAGCAACAATAAACCAT+AGG | + | chr3_2:63176176-63176195 | None:intergenic | 35.0% | |
| !! | AACCAAGACATTCTAGTTCA+GGG | + | chr3_2:63176279-63176298 | None:intergenic | 35.0% |
| !! | AAACCAAGACATTCTAGTTC+AGG | + | chr3_2:63176280-63176299 | None:intergenic | 35.0% |
| ! | CTTGAAACATGATTTGGGAT+AGG | + | chr3_2:63176364-63176383 | None:intergenic | 35.0% |
| ! | TCATGTTTCAAGTGTTCACA+CGG | - | chr3_2:63176372-63176391 | Msa0416370:intron | 35.0% |
| CCTTAAAAAGCTGAGAGAAA+TGG | + | chr3_2:63176458-63176477 | None:intergenic | 35.0% | |
| ! | CCATTTCTCTCAGCTTTTTA+AGG | - | chr3_2:63176455-63176474 | Msa0416370:intron | 35.0% |
| !! | TCTCAGCTTTTTAAGGAGAA+AGG | - | chr3_2:63176462-63176481 | Msa0416370:intron | 35.0% |
| !! | CTCAGCTTTTTAAGGAGAAA+GGG | - | chr3_2:63176463-63176482 | Msa0416370:intron | 35.0% |
| TAGCACACTAAATACAAGCT+CGG | + | chr3_2:63174991-63175010 | None:intergenic | 35.0% | |
| CCATTTGATCCTCCTAAAAA+AGG | + | chr3_2:63175281-63175300 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTAGGAGGATCAAA+TGG | - | chr3_2:63175278-63175297 | Msa0416370:intron | 35.0% |
| !! | TTTTTAGGAGGATCAAATGG+TGG | - | chr3_2:63175281-63175300 | Msa0416370:intron | 35.0% |
| CATCGTTAATTATGTGACCA+GGG | - | chr3_2:63175427-63175446 | Msa0416370:intron | 35.0% | |
| !! | CTAGTCCTGTAATTTTAAGG+AGG | + | chr3_2:63175556-63175575 | None:intergenic | 35.0% |
| TTAGAGTAAGTACGTGGATT+AGG | - | chr3_2:63175630-63175649 | Msa0416370:intron | 35.0% | |
| !!! | GTTGTTTTTTTAGCCTGCTT+GGG | - | chr3_2:63175710-63175729 | Msa0416370:intron | 35.0% |
| !! | GATGAGGAGTACCATTTAAA+AGG | - | chr3_2:63176129-63176148 | Msa0416370:intron | 35.0% |
| TGGAAGCAACAATAAACCAT+AGG | + | chr3_2:63176176-63176195 | None:intergenic | 35.0% | |
| !! | AACCAAGACATTCTAGTTCA+GGG | + | chr3_2:63176279-63176298 | None:intergenic | 35.0% |
| !! | AAACCAAGACATTCTAGTTC+AGG | + | chr3_2:63176280-63176299 | None:intergenic | 35.0% |
| ! | CTTGAAACATGATTTGGGAT+AGG | + | chr3_2:63176364-63176383 | None:intergenic | 35.0% |
| ! | TCATGTTTCAAGTGTTCACA+CGG | - | chr3_2:63176372-63176391 | Msa0416370:intron | 35.0% |
| CCTTAAAAAGCTGAGAGAAA+TGG | + | chr3_2:63176458-63176477 | None:intergenic | 35.0% | |
| ! | CCATTTCTCTCAGCTTTTTA+AGG | - | chr3_2:63176455-63176474 | Msa0416370:intron | 35.0% |
| !! | TCTCAGCTTTTTAAGGAGAA+AGG | - | chr3_2:63176462-63176481 | Msa0416370:intron | 35.0% |
| !! | CTCAGCTTTTTAAGGAGAAA+GGG | - | chr3_2:63176463-63176482 | Msa0416370:intron | 35.0% |
| AGAAGCTTGACAACAATGAG+AGG | - | chr3_2:63174961-63174980 | Msa0416370:CDS | 40.0% | |
| !!! | GGTTTGGTTCCTTTTTTAGG+AGG | - | chr3_2:63175269-63175288 | Msa0416370:intron | 40.0% |
| CCTGGTCACATAATTAACGA+TGG | + | chr3_2:63175429-63175448 | None:intergenic | 40.0% | |
| CCATCGTTAATTATGTGACC+AGG | - | chr3_2:63175426-63175445 | Msa0416370:intron | 40.0% | |
| !! | GAGCTTTTTCTTCTGCAATC+TGG | - | chr3_2:63175498-63175517 | Msa0416370:intron | 40.0% |
| CAAGGCCTCCTTAAAATTAC+AGG | - | chr3_2:63175548-63175567 | Msa0416370:intron | 40.0% | |
| AGACTGTTAGAGTAAGTACG+TGG | - | chr3_2:63175624-63175643 | Msa0416370:intron | 40.0% | |
| TCATAGCAGAGTGGAGTTTA+GGG | - | chr3_2:63175683-63175702 | Msa0416370:intron | 40.0% | |
| !!! | GGTTGTTTTTTTAGCCTGCT+TGG | - | chr3_2:63175709-63175728 | Msa0416370:intron | 40.0% |
| !! | TTTTTAGCCTGCTTGGGTTT+TGG | - | chr3_2:63175716-63175735 | Msa0416370:intron | 40.0% |
| ! | CAACAAGTGCCGCATATATA+AGG | + | chr3_2:63175746-63175765 | None:intergenic | 40.0% |
| TGGATCGTTCATCGAGTTAT+CGG | + | chr3_2:63175903-63175922 | None:intergenic | 40.0% | |
| TCGATGAACGATCCAAATGT+TGG | - | chr3_2:63175908-63175927 | Msa0416370:intron | 40.0% | |
| !! | CCTCATCAAAGTACCTTTTG+AGG | + | chr3_2:63176116-63176135 | None:intergenic | 40.0% |
| !! | CCTCAAAAGGTACTTTGATG+AGG | - | chr3_2:63176113-63176132 | Msa0416370:intron | 40.0% |
| TACCCTGAACTAGAATGTCT+TGG | - | chr3_2:63176274-63176293 | Msa0416370:intron | 40.0% | |
| TCAAGGGCTGCATAATTTGA+TGG | + | chr3_2:63176414-63176433 | None:intergenic | 40.0% | |
| TCAAATTATGCAGCCCTTGA+AGG | - | chr3_2:63176414-63176433 | Msa0416370:intron | 40.0% | |
| GCAGTACAAAATGCCTTCAA+GGG | + | chr3_2:63176430-63176449 | None:intergenic | 40.0% | |
| TGCAGTACAAAATGCCTTCA+AGG | + | chr3_2:63176431-63176450 | None:intergenic | 40.0% | |
| AGAAGCTTGACAACAATGAG+AGG | - | chr3_2:63174961-63174980 | Msa0416370:CDS | 40.0% | |
| !!! | GGTTTGGTTCCTTTTTTAGG+AGG | - | chr3_2:63175269-63175288 | Msa0416370:intron | 40.0% |
| CCTGGTCACATAATTAACGA+TGG | + | chr3_2:63175429-63175448 | None:intergenic | 40.0% | |
| CCATCGTTAATTATGTGACC+AGG | - | chr3_2:63175426-63175445 | Msa0416370:intron | 40.0% | |
| !! | GAGCTTTTTCTTCTGCAATC+TGG | - | chr3_2:63175498-63175517 | Msa0416370:intron | 40.0% |
| CAAGGCCTCCTTAAAATTAC+AGG | - | chr3_2:63175548-63175567 | Msa0416370:intron | 40.0% | |
| AGACTGTTAGAGTAAGTACG+TGG | - | chr3_2:63175624-63175643 | Msa0416370:intron | 40.0% | |
| TCATAGCAGAGTGGAGTTTA+GGG | - | chr3_2:63175683-63175702 | Msa0416370:intron | 40.0% | |
| !!! | GGTTGTTTTTTTAGCCTGCT+TGG | - | chr3_2:63175709-63175728 | Msa0416370:intron | 40.0% |
| !! | TTTTTAGCCTGCTTGGGTTT+TGG | - | chr3_2:63175716-63175735 | Msa0416370:intron | 40.0% |
| ! | CAACAAGTGCCGCATATATA+AGG | + | chr3_2:63175746-63175765 | None:intergenic | 40.0% |
| TGGATCGTTCATCGAGTTAT+CGG | + | chr3_2:63175903-63175922 | None:intergenic | 40.0% | |
| TCGATGAACGATCCAAATGT+TGG | - | chr3_2:63175908-63175927 | Msa0416370:intron | 40.0% | |
| !! | CCTCATCAAAGTACCTTTTG+AGG | + | chr3_2:63176116-63176135 | None:intergenic | 40.0% |
| !! | CCTCAAAAGGTACTTTGATG+AGG | - | chr3_2:63176113-63176132 | Msa0416370:intron | 40.0% |
| TACCCTGAACTAGAATGTCT+TGG | - | chr3_2:63176274-63176293 | Msa0416370:intron | 40.0% | |
| TCAAGGGCTGCATAATTTGA+TGG | + | chr3_2:63176414-63176433 | None:intergenic | 40.0% | |
| TCAAATTATGCAGCCCTTGA+AGG | - | chr3_2:63176414-63176433 | Msa0416370:intron | 40.0% | |
| GCAGTACAAAATGCCTTCAA+GGG | + | chr3_2:63176430-63176449 | None:intergenic | 40.0% | |
| TGCAGTACAAAATGCCTTCA+AGG | + | chr3_2:63176431-63176450 | None:intergenic | 40.0% | |
| AGCTTGACAACAATGAGAGG+AGG | - | chr3_2:63174964-63174983 | Msa0416370:CDS | 45.0% | |
| GTGTAAAGATTGTGTCCCTC+AGG | - | chr3_2:63175238-63175257 | Msa0416370:intron | 45.0% | |
| TAAAGATTGTGTCCCTCAGG+TGG | - | chr3_2:63175241-63175260 | Msa0416370:intron | 45.0% | |
| CCAAACCAATATCCACCTGA+GGG | + | chr3_2:63175256-63175275 | None:intergenic | 45.0% | |
| ACCAAACCAATATCCACCTG+AGG | + | chr3_2:63175257-63175276 | None:intergenic | 45.0% | |
| !! | GTGGATTAGGAACTTTGAGC+AGG | - | chr3_2:63175643-63175662 | Msa0416370:intron | 45.0% |
| TTGCAACTGTCATAGCAGAG+TGG | - | chr3_2:63175674-63175693 | Msa0416370:intron | 45.0% | |
| GTCATAGCAGAGTGGAGTTT+AGG | - | chr3_2:63175682-63175701 | Msa0416370:intron | 45.0% | |
| CATAGCAGAGTGGAGTTTAG+GGG | - | chr3_2:63175684-63175703 | Msa0416370:intron | 45.0% | |
| TTTGAGCAGGAGACTGTCAA+AGG | - | chr3_2:63175863-63175882 | Msa0416370:intron | 45.0% | |
| TCGTTCATCGAGTTATCGGA+CGG | + | chr3_2:63175899-63175918 | None:intergenic | 45.0% | |
| ! | AACATGATTTGGGATAGGCC+TGG | + | chr3_2:63176359-63176378 | None:intergenic | 45.0% |
| ! | TGTTTCAAGTGTTCACACGG+AGG | - | chr3_2:63176375-63176394 | Msa0416370:intron | 45.0% |
| AGCTTGACAACAATGAGAGG+AGG | - | chr3_2:63174964-63174983 | Msa0416370:CDS | 45.0% | |
| GTGTAAAGATTGTGTCCCTC+AGG | - | chr3_2:63175238-63175257 | Msa0416370:intron | 45.0% | |
| TAAAGATTGTGTCCCTCAGG+TGG | - | chr3_2:63175241-63175260 | Msa0416370:intron | 45.0% | |
| CCAAACCAATATCCACCTGA+GGG | + | chr3_2:63175256-63175275 | None:intergenic | 45.0% | |
| ACCAAACCAATATCCACCTG+AGG | + | chr3_2:63175257-63175276 | None:intergenic | 45.0% | |
| !! | GTGGATTAGGAACTTTGAGC+AGG | - | chr3_2:63175643-63175662 | Msa0416370:intron | 45.0% |
| TTGCAACTGTCATAGCAGAG+TGG | - | chr3_2:63175674-63175693 | Msa0416370:intron | 45.0% | |
| GTCATAGCAGAGTGGAGTTT+AGG | - | chr3_2:63175682-63175701 | Msa0416370:intron | 45.0% | |
| CATAGCAGAGTGGAGTTTAG+GGG | - | chr3_2:63175684-63175703 | Msa0416370:intron | 45.0% | |
| TTTGAGCAGGAGACTGTCAA+AGG | - | chr3_2:63175863-63175882 | Msa0416370:intron | 45.0% | |
| TCGTTCATCGAGTTATCGGA+CGG | + | chr3_2:63175899-63175918 | None:intergenic | 45.0% | |
| ! | AACATGATTTGGGATAGGCC+TGG | + | chr3_2:63176359-63176378 | None:intergenic | 45.0% |
| ! | TGTTTCAAGTGTTCACACGG+AGG | - | chr3_2:63176375-63176394 | Msa0416370:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTTGAAA+CGG | + | chr3_2:63175824-63175843 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTGAAA+CGG | + | chr3_2:63175824-63175843 | None:intergenic | 5.0% |
| TGTGTCCCTCAGGTGGATAT+TGG | - | chr3_2:63175248-63175267 | Msa0416370:intron | 50.0% | |
| ! | CCCTCAGGTGGATATTGGTT+TGG | - | chr3_2:63175253-63175272 | Msa0416370:intron | 50.0% |
| GCTAGTAGAGAAAGAAGCCC+TGG | + | chr3_2:63175447-63175466 | None:intergenic | 50.0% | |
| ! | CTGGCGCAACAGGTTTTACT+TGG | - | chr3_2:63175517-63175536 | Msa0416370:intron | 50.0% |
| AGGAACACCAAAACCCAAGC+AGG | + | chr3_2:63175726-63175745 | None:intergenic | 50.0% | |
| GTAGGTAACAGTCGAAAGCC+AGG | - | chr3_2:63176338-63176357 | Msa0416370:intron | 50.0% | |
| TGTGTCCCTCAGGTGGATAT+TGG | - | chr3_2:63175248-63175267 | Msa0416370:intron | 50.0% | |
| ! | CCCTCAGGTGGATATTGGTT+TGG | - | chr3_2:63175253-63175272 | Msa0416370:intron | 50.0% |
| GCTAGTAGAGAAAGAAGCCC+TGG | + | chr3_2:63175447-63175466 | None:intergenic | 50.0% | |
| ! | CTGGCGCAACAGGTTTTACT+TGG | - | chr3_2:63175517-63175536 | Msa0416370:intron | 50.0% |
| AGGAACACCAAAACCCAAGC+AGG | + | chr3_2:63175726-63175745 | None:intergenic | 50.0% | |
| GTAGGTAACAGTCGAAAGCC+AGG | - | chr3_2:63176338-63176357 | Msa0416370:intron | 50.0% | |
| CTTCTGCAATCTGGCGCAAC+AGG | - | chr3_2:63175507-63175526 | Msa0416370:intron | 55.0% | |
| AGCAGAGTGGAGTTTAGGGG+TGG | - | chr3_2:63175687-63175706 | Msa0416370:intron | 55.0% | |
| GCAGAGTGGAGTTTAGGGGT+GGG | - | chr3_2:63175688-63175707 | Msa0416370:intron | 55.0% | |
| CGTCCATACCTTGCGTCTTG+CGG | - | chr3_2:63175777-63175796 | Msa0416370:intron | 55.0% | |
| GTCCATACCTTGCGTCTTGC+GGG | - | chr3_2:63175778-63175797 | Msa0416370:intron | 55.0% | |
| TCCATACCTTGCGTCTTGCG+GGG | - | chr3_2:63175779-63175798 | Msa0416370:intron | 55.0% | |
| CTTCTGCAATCTGGCGCAAC+AGG | - | chr3_2:63175507-63175526 | Msa0416370:intron | 55.0% | |
| AGCAGAGTGGAGTTTAGGGG+TGG | - | chr3_2:63175687-63175706 | Msa0416370:intron | 55.0% | |
| GCAGAGTGGAGTTTAGGGGT+GGG | - | chr3_2:63175688-63175707 | Msa0416370:intron | 55.0% | |
| CGTCCATACCTTGCGTCTTG+CGG | - | chr3_2:63175777-63175796 | Msa0416370:intron | 55.0% | |
| GTCCATACCTTGCGTCTTGC+GGG | - | chr3_2:63175778-63175797 | Msa0416370:intron | 55.0% | |
| TCCATACCTTGCGTCTTGCG+GGG | - | chr3_2:63175779-63175798 | Msa0416370:intron | 55.0% | |
| TCCCCGCAAGACGCAAGGTA+TGG | + | chr3_2:63175783-63175802 | None:intergenic | 60.0% | |
| TACCTTGCGTCTTGCGGGGA+TGG | - | chr3_2:63175783-63175802 | Msa0416370:intron | 60.0% | |
| TCCCCGCAAGACGCAAGGTA+TGG | + | chr3_2:63175783-63175802 | None:intergenic | 60.0% | |
| TACCTTGCGTCTTGCGGGGA+TGG | - | chr3_2:63175783-63175802 | Msa0416370:intron | 60.0% | |
| CGCCATCCCCGCAAGACGCA+AGG | + | chr3_2:63175788-63175807 | None:intergenic | 70.0% | |
| CGCCATCCCCGCAAGACGCA+AGG | + | chr3_2:63175788-63175807 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 63174954 | 63176551 | 63174954 | ID=Msa0416370;Name=Msa0416370 |
| chr3_2 | mRNA | 63174954 | 63176551 | 63174954 | ID=Msa0416370-mRNA-1;Parent=Msa0416370;Name=Msa0416370-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.5|1|1|2|0|83 |
| chr3_2 | exon | 63176510 | 63176551 | 63176510 | ID=Msa0416370-mRNA-1:exon:13716;Parent=Msa0416370-mRNA-1 |
| chr3_2 | exon | 63174954 | 63175163 | 63174954 | ID=Msa0416370-mRNA-1:exon:13715;Parent=Msa0416370-mRNA-1 |
| chr3_2 | CDS | 63176510 | 63176551 | 63176510 | ID=Msa0416370-mRNA-1:cds;Parent=Msa0416370-mRNA-1 |
| chr3_2 | CDS | 63174954 | 63175163 | 63174954 | ID=Msa0416370-mRNA-1:cds;Parent=Msa0416370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
