AlfalfaGEDB | Msa0416370

M. sativa cultivar zhongmu-4 / Msa0416370

KEGG: K09377
GO: GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0044877 GO:0051015 GO:0051017 GO:0061572 GO:0071840 GO:0097435
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416370	KEH34778.1	93.151	73	5	0	11	83	2	74	3.52e-41	139

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416370	sp\|Q9M047\|WLI2B_ARATH	89.062	64	7	0	13	76	119	182	2.82e-35	121
Msa0416370	sp\|Q9M047\|WLI2B_ARATH	48.571	70	35	1	13	82	21	89	3.60e-14	67.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416370	A0A072V070	93.151	73	5	0	11	83	2	74	1.68e-41	139

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TFs/TRs:

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Gene ID	Type	Classification
Msa0416370	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416370	MtrunA17_Chr3g0113051	95.775	71	3	13	83	121	191	3.22e-43	138
Msa0416370	MtrunA17_Chr3g0113051	43.396	53	30	13	65	21	73	5.02e-11	55.8
Msa0416370	MtrunA17_Chr8g0386501	66.129	62	21	13	74	113	174	2.67e-24	90.9
Msa0416370	MtrunA17_Chr8g0349391	62.712	59	22	13	71	115	173	8.18e-24	89.4
Msa0416370	MtrunA17_Chr8g0349391	49.206	63	32	3	65	11	73	8.63e-15	65.9
Msa0416370	MtrunA17_Chr7g0247111	58.065	62	26	13	74	117	178	2.66e-23	88.2
Msa0416370	MtrunA17_Chr7g0247111	41.429	70	41	3	72	11	80	4.38e-13	61.6
Msa0416370	MtrunA17_Chr1g0152431	64.286	56	20	12	67	120	175	1.91e-18	75.1
Msa0416370	MtrunA17_Chr4g0059371	49.180	61	31	13	73	121	181	1.22e-17	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416370	AT3G55770.3	89.062	64	7	0	13	76	119	182	2.86e-36	121
Msa0416370	AT3G55770.3	48.571	70	35	1	13	82	21	89	3.66e-15	67.0
Msa0416370	AT3G55770.5	89.062	64	7	0	13	76	119	182	2.86e-36	121
Msa0416370	AT3G55770.5	48.571	70	35	1	13	82	21	89	3.66e-15	67.0
Msa0416370	AT3G55770.2	89.062	64	7	0	13	76	119	182	2.86e-36	121
Msa0416370	AT3G55770.2	48.571	70	35	1	13	82	21	89	3.66e-15	67.0
Msa0416370	AT3G55770.1	89.062	64	7	0	13	76	119	182	2.86e-36	121
Msa0416370	AT3G55770.1	48.571	70	35	1	13	82	21	89	3.66e-15	67.0
Msa0416370	AT2G39900.1	91.935	62	5	0	13	74	120	181	8.63e-36	120
Msa0416370	AT2G39900.1	40.845	71	42	0	12	82	20	90	2.50e-13	62.4

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Find 17 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGATTTGGGATAGGCC+TGG	0.600433	3_2:+63175127	None:intergenic
AGAAGCTTGACAACAATGAG+AGG	0.652052	3_2:-63176522	Msa0416370:CDS
AGCTTGACAACAATGAGAGG+AGG	0.645458	3_2:-63176519	Msa0416370:CDS
CATAATTTGATGGAGTTATA+GGG	0.324721	3_2:+63175082	None:intergenic
CTTGAAACATGATTTGGGAT+AGG	0.554637	3_2:+63175122	None:intergenic
GAACACTTGAAACATGATTT+GGG	0.456736	3_2:+63175117	None:intergenic
GCAGTACAAAATGCCTTCAA+GGG	0.612938	3_2:+63175056	None:intergenic
GCATAATTTGATGGAGTTAT+AGG	0.257991	3_2:+63175081	None:intergenic
GGCACCAACATTCAAGATTC+TGG	0.320266	3_2:+63174943	None:intergenic
GTAGGTAACAGTCGAAAGCC+AGG	0.532163	3_2:-63175145	Msa0416370:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATGCTGAATATAGTTTCC+TGG	-	chr3_2:63175143-63175162	Msa0416370:CDS	30.0%
AATAAAGGGTAGAATTGTTC+AGG	-	chr3_2:63175335-63175354	Msa0416370:intron	30.0%
CATATCAACAAAAAGGGAAA+AGG	+	chr3_2:63175952-63175971	None:intergenic	30.0%
AACAAATTAACATTCATCGC+AGG	+	chr3_2:63176043-63176062	None:intergenic	30.0%
GAACACTTGAAACATGATTT+GGG	+	chr3_2:63176369-63176388	None:intergenic	30.0%
TGAACACTTGAAACATGATT+TGG	+	chr3_2:63176370-63176389	None:intergenic	30.0%
GCATAATTTGATGGAGTTAT+AGG	+	chr3_2:63176405-63176424	None:intergenic	30.0%
TTATGCTGAATATAGTTTCC+TGG	-	chr3_2:63175143-63175162	Msa0416370:CDS	30.0%
AATAAAGGGTAGAATTGTTC+AGG	-	chr3_2:63175335-63175354	Msa0416370:intron	30.0%
CATATCAACAAAAAGGGAAA+AGG	+	chr3_2:63175952-63175971	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	63174954	63176551	63174954	ID=Msa0416370;Name=Msa0416370
chr3_2	mRNA	63174954	63176551	63174954	ID=Msa0416370-mRNA-1;Parent=Msa0416370;Name=Msa0416370-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|83
chr3_2	exon	63176510	63176551	63176510	ID=Msa0416370-mRNA-1:exon:13716;Parent=Msa0416370-mRNA-1
chr3_2	exon	63174954	63175163	63174954	ID=Msa0416370-mRNA-1:exon:13715;Parent=Msa0416370-mRNA-1
chr3_2	CDS	63176510	63176551	63176510	ID=Msa0416370-mRNA-1:cds;Parent=Msa0416370-mRNA-1
chr3_2	CDS	63174954	63175163	63174954	ID=Msa0416370-mRNA-1:cds;Parent=Msa0416370-mRNA-1

Gene Sequence	>Msa0416370 ATGGACAAGAAGCTTGACAACAATGAGAGGAGGACCGAGCTTGTAACAGTCGAAAGCCAGGCCTATCCCAAATCATGTTTCAAGTGTTCACACGGAGGTTGCCCTATAACTCCATCAAATTATGCAGCCCTTGAAGGCATTTTGTACTGCAAGCACCATTTCTCTCAGCTTTTTAAGGAGAAAGGGAGCTACAATCATCTTATCAAGTCTGCATCAATCAAACATGCAGCAGCATCTGTTCCAGAATCTTGA
Protein sequence	>Msa0416370 MDKKLDNNERRTELVTVESQAYPKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKHAAASVPES*