AlfalfaGEDB | Msa0416780

M. sativa cultivar zhongmu-4 / Msa0416780

KEGG: K15683
GO: GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
PFAM: PF01422.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416780	XP_003600910.2	94.900	902	19	2	1	902	1	875	0.0	1705

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416780	sp\|Q9FFK8\|NFXL2_ARATH	66.244	868	261	5	33	900	44	879	0.0	1149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416780	G7JBA9	94.900	902	19	2	1	902	1	875	0.0	1705

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TFs/TRs:

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Gene ID	Type	Classification
Msa0416780	TF	NF-X1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416780	MtrunA17_Chr3g0113591	94.900	902	19	2	1	902	1	875	0.0	1705
Msa0416780	MtrunA17_Chr6g0479161	30.615	797	388	29	47	763	172	883	9.58e-80	281
Msa0416780	MtrunA17_Chr4g0012511	33.837	662	303	24	61	675	33	606	8.03e-79	276
Msa0416780	MtrunA17_Chr4g0012511	27.087	587	260	20	204	718	94	584	8.80e-25	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416780	AT5G05660.1	66.244	868	261	5	33	900	44	879	0.0	1149
Msa0416780	AT1G10170.2	36.914	512	247	20	61	519	137	625	6.40e-71	255
Msa0416780	AT1G10170.2	27.711	498	260	22	266	716	219	663	7.67e-19	92.8
Msa0416780	AT1G10170.4	36.914	512	247	20	61	519	209	697	7.97e-71	255
Msa0416780	AT1G10170.4	27.711	498	260	22	266	716	291	735	1.58e-18	92.0
Msa0416780	AT1G10170.1	36.719	512	248	19	61	519	209	697	1.10e-70	255
Msa0416780	AT1G10170.1	27.711	498	260	22	266	716	291	735	2.53e-18	91.3
Msa0416780	AT1G10170.3	36.719	512	248	19	61	519	209	697	1.10e-70	255
Msa0416780	AT1G10170.3	27.711	498	260	22	266	716	291	735	2.53e-18	91.3

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Find 286 sgRNAs with CRISPR-Local

Find 507 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACATACCTATGGCA+TGG	0.606167	3_2:-63750020	None:intergenic
AAAACCCAAGGATCATCACT+GGG	0.667938	3_2:-63748998	None:intergenic
AAAATTTACCTTTGTTTCTG+TGG	0.461551	3_2:+63748959	Msa0416780:CDS
AAAGGAACCAACAATACTGC+AGG	0.573902	3_2:+63754794	Msa0416780:CDS
AAATCCTACTTCAACTTCTC+CGG	0.468783	3_2:+63748623	Msa0416780:CDS
AACAATTTCAGACACAGACA+AGG	0.613908	3_2:+63748416	None:intergenic
AACCACTTACATCTTTCCTA+AGG	0.520379	3_2:-63749636	None:intergenic
AACTTGTCCTTGTGGGAAAA+GGG	0.496194	3_2:+63749453	Msa0416780:CDS
AAGATCGGTTCTTCAAGGCA+TGG	0.650910	3_2:-63753068	None:intergenic
AAGCCTCACTTATCGGTGAC+TGG	0.560308	3_2:-63753098	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGATATTCAACTCTACATTT+AGG	-	chr3_2:63748923-63748942	None:intergenic	30.0%
AGATCGTTGAAAAATGATTG+TGG	+	chr3_2:63749049-63749068	Msa0416780:CDS	30.0%
GATCGTTGAAAAATGATTGT+GGG	+	chr3_2:63749050-63749069	Msa0416780:CDS	30.0%
TGTGAGAAAAAATTGGATTG+TGG	+	chr3_2:63749205-63749224	Msa0416780:CDS	30.0%
ACAATTATTAGATATGTGGC+AGG	+	chr3_2:63749964-63749983	Msa0416780:intron	30.0%
AGTAAATGGCTAGATAATGT+TGG	+	chr3_2:63750629-63750648	Msa0416780:intron	30.0%
ATTAGATCAACAGCATAACA+AGG	-	chr3_2:63751193-63751212	None:intergenic	30.0%
GTAAGAAAGGACAATAACAT+TGG	+	chr3_2:63751423-63751442	Msa0416780:intron	30.0%
ATAACATTGGATTCTTCTTG+TGG	+	chr3_2:63751436-63751455	Msa0416780:intron	30.0%
TCATTGGAAATAAAAGGCTA+AGG	-	chr3_2:63751823-63751842	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	63748431	63755370	63748431	ID=Msa0416780;Name=Msa0416780
chr3_2	mRNA	63748431	63755370	63748431	ID=Msa0416780-mRNA-1;Parent=Msa0416780;Name=Msa0416780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=66\|0.91\|0.92\|1\|1\|1\|13\|298\|902
chr3_2	exon	63748431	63749648	63748431	ID=Msa0416780-mRNA-1:exon:13948;Parent=Msa0416780-mRNA-1
chr3_2	exon	63749739	63749852	63749739	ID=Msa0416780-mRNA-1:exon:13949;Parent=Msa0416780-mRNA-1
chr3_2	exon	63749975	63750030	63749975	ID=Msa0416780-mRNA-1:exon:13950;Parent=Msa0416780-mRNA-1
chr3_2	exon	63750389	63750455	63750389	ID=Msa0416780-mRNA-1:exon:13951;Parent=Msa0416780-mRNA-1
chr3_2	exon	63750824	63750916	63750824	ID=Msa0416780-mRNA-1:exon:13952;Parent=Msa0416780-mRNA-1
chr3_2	exon	63752361	63752446	63752361	ID=Msa0416780-mRNA-1:exon:13953;Parent=Msa0416780-mRNA-1
chr3_2	exon	63752683	63752845	63752683	ID=Msa0416780-mRNA-1:exon:13954;Parent=Msa0416780-mRNA-1
chr3_2	exon	63752979	63753149	63752979	ID=Msa0416780-mRNA-1:exon:13955;Parent=Msa0416780-mRNA-1
chr3_2	exon	63753325	63753515	63753325	ID=Msa0416780-mRNA-1:exon:13956;Parent=Msa0416780-mRNA-1
chr3_2	exon	63753666	63753747	63753666	ID=Msa0416780-mRNA-1:exon:13957;Parent=Msa0416780-mRNA-1
chr3_2	exon	63753839	63754123	63753839	ID=Msa0416780-mRNA-1:exon:13958;Parent=Msa0416780-mRNA-1
chr3_2	exon	63754723	63754815	63754723	ID=Msa0416780-mRNA-1:exon:13959;Parent=Msa0416780-mRNA-1
chr3_2	exon	63754917	63755370	63754917	ID=Msa0416780-mRNA-1:exon:13960;Parent=Msa0416780-mRNA-1
chr3_2	five_prime_UTR	63748431	63748496	63748431	ID=Msa0416780-mRNA-1:five_prime_utr;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63748497	63749648	63748497	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63749739	63749852	63749739	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63749975	63750030	63749975	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63750389	63750455	63750389	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63750824	63750916	63750824	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63752361	63752446	63752361	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63752683	63752845	63752683	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63752979	63753149	63752979	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63753325	63753515	63753325	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63753666	63753747	63753666	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63753839	63754123	63753839	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63754723	63754815	63754723	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	CDS	63754917	63755072	63754917	ID=Msa0416780-mRNA-1:cds;Parent=Msa0416780-mRNA-1
chr3_2	three_prime_UTR	63755073	63755370	63755073	ID=Msa0416780-mRNA-1:three_prime_utr;Parent=Msa0416780-mRNA-1

Gene Sequence

>Msa0416780

ATGGCGGCATCACATAACCACCGTCCGCAACCGCCACAACCACTCTCCGACTCCGATTCTGACGGAGGCGGTGGCTCCTCCACCACATCACTCCTTCGCCACTCCGACCTATCCGAATCAATATTCAAATCCTACTTCAACTTCTCCGGCCACTCCTCAACCAATGCCACCACCGCCGACCTCTCCAAGATCCAATCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTCTCCTGCCTCATCTGCCTCGAACGCATCAAACCTTCTGATCCAACTTGGTCCTGCACCTCCCTCTGCTTCGCCGTCTTCCATCTCTTCTGTATTCAAAGCTGGTCTCGTCAAGCTTCCGATCTCGCCGCCGCACGCGCTGTCACGCGCCTCTCCGTTTCTGCTGAACACGCTGCCGAAACATCTCTCTGGAACTGTCCTAAATGTAGAGTTGAATATCCCAAAAATTTAATCCCAAAAATTTACCTTTGTTTCTGTGGTAAATTGGAGAATCCACCCAGTGATGATCCTTGGGTTTTACCTCATTCCTGTGGTGAAGTTTGTGGTAGATCGTTGAAAAATGATTGTGGGCATCGTTGTTTGCTTCTTTGTCATCCTGGGCCATGTCCATCTTGTCCACAATTGGTTACTGTTAGTTGCTTTTGTGGGTCCCATCAAGATGTACGTAGATGTGGGTTCAAAGAGTTTTCTTGTGAAGCACGTTGTGAGAAAAAATTGGATTGTGGTGTTCATAGGTGTGTTGAGATTTGCCACCGTGGCGATTGTCCGCCGTGTCGGGCGCGTGGTGTTTATAGGTGTCAATGTGGGAAGGTGAAAGAGGAGAGGGAGTGTTGTGAACGTGTTTTTCAATGTGGTGATCCTTGTGAGAAGAAGCTTAGCTGTGGGAAGCATGTTTGTGAGAAAGGGTGCCATTCTGGGGAGTGTGGTGGATGTCCTTTACAAGGGAAGAGAACTTGTCCTTGTGGGAAAAGGGTGTATGAAGGAATGCCTTGTGATGCTCCTTTGCAGGTTTGTGGTGCAACTTGTGAGAAAACGTTGCCGTGTGGGTATCATAGGTGTCATGAACGATGCCATCGTGGTCAGTGTATGGAGACTTGTAGGATTGTTGTGAAGAAAAGTTGTCGTTGTCGAAGCCTTAGGAAAGATGTGCCTTGCTATCAAGATTTGACATGTGAGAGGAAGTGCCAGACATTGCGCGACTGTGGTAAGCACCCGTGTAAGCGCCGCTGCTGTGATGGAGATTGCCCTCCGTGCTCAGAGATATGTGGCAGGAGGCTTCGCTGTAGGAACCATAAATGCCAATCTCCATGCCATAGAGGTCCTTGTGCTCCTTGTCCTATAATGGTGACAATTGCTTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACGGAAATGGATCAAAAGCCACCTAAATGTCGTAAACAATGTCCTATTCAGCCTTTGTGCCGGCATGCATCAATCTCCAAGCCTCACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGCCTACCTTGTGCAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGGTGTCATGGTGCTAGGCCTCCTCCTAAACCCGAGTTTACTCTCAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAAGTGTTCCCGGCACTCCATGCCCTCCTTGCCCAGAACTAGAATGGAGACCATGTGTGGGGCAACACATTGGAGCAGAGAGAATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGATAATTTATGTGGTAATCCTCTACCATGTGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGAAGAACCGATCTTCCATGAACCAGTCACCGATAAGTGAGGCTTGTGAAGCTTGTTCGCTTTCTTGCCAAAAGGAACGAAAGCCTAAGTGTCAACATCACTGCCCTCGGCGCTGCCACCCTGGAGACTGCCCCCCATGCAAGGTGCTAATTAAACGGTCATGTCATTGTGGTGCAATGGTCCATGCTTTTGAGTGCATTTATTACAACAGCCTGTCTGCAAGGGATCAAGAGACTGCCCGGTCATGTGGTGGACCATGTCATAGAAAGATGCCAAATTGTACACACCTATGCCCAGAGACATGTCATCCTGGTGAATGCCCAAATCCTGAGAAATGCTCTAAAAAGATACTGCAAACTAAACAAACCAATACACCTATTATTGATCCAATTTATCTTCTAAATTATGAACTCGTTCTTTACAAGGTCACTGCTCGTTGCAAATGCCAAACGCTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGTGCTGGTTGCAATCCAAGCGATGTACCAAAAAATCAATTTGGGGTTGGACTTATTCCTTGCAATTCTGACTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAATTGCAATTACGTAAATCTAAAGTTACAGAGGTGAAGGAGCAGCCAGATAATGAAAAATCAGGTCCAAAGCGGCGAAAAAAGCGAGAGCGGGTAGTAGAATCAAAGGAACCAACAATACTGCAGAAAATTATTTCCAGAGCAAAGCAGCTTCTTCTATTTATATTTTTCTTGGTCATACTTGTTGCTGCTACTCATTATGGGTACAAGGGACTACTATGGCTCAATGATTGGATGAATAAAGTCGATGAACAAAGACAAAGGTCTTCACGAATCAGATGA

Protein sequence

>Msa0416780

MAASHNHRPQPPQPLSDSDSDGGGGSSTTSLLRHSDLSESIFKSYFNFSGHSSTNATTADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAAARAVTRLSVSAEHAAETSLWNCPKCRVEYPKNLIPKIYLCFCGKLENPPSDDPWVLPHSCGEVCGRSLKNDCGHRCLLLCHPGPCPSCPQLVTVSCFCGSHQDVRRCGFKEFSCEARCEKKLDCGVHRCVEICHRGDCPPCRARGVYRCQCGKVKEERECCERVFQCGDPCEKKLSCGKHVCEKGCHSGECGGCPLQGKRTCPCGKRVYEGMPCDAPLQVCGATCEKTLPCGYHRCHERCHRGQCMETCRIVVKKSCRCRSLRKDVPCYQDLTCERKCQTLRDCGKHPCKRRCCDGDCPPCSEICGRRLRCRNHKCQSPCHRGPCAPCPIMVTIACACGETHFEVPCGTEMDQKPPKCRKQCPIQPLCRHASISKPHKCHYGACPPCRLPCAEEYQCGHACKLRCHGARPPPKPEFTLKPKKKKIIQQSESVPGTPCPPCPELEWRPCVGQHIGAERMMVCSNKSQFSCDNLCGNPLPCGNHYCTKTCHALKNRSSMNQSPISEACEACSLSCQKERKPKCQHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNSLSARDQETARSCGGPCHRKMPNCTHLCPETCHPGECPNPEKCSKKILQTKQTNTPIIDPIYLLNYELVLYKVTARCKCQTLKKEWLCQDVQAAHNRAGCNPSDVPKNQFGVGLIPCNSDCKSKVQVVESELQLRKSKVTEVKEQPDNEKSGPKRRKKRERVVESKEPTILQKIISRAKQLLLFIFFLVILVAATHYGYKGLLWLNDWMNKVDEQRQRSSRIR*