Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417110 | XP_003601024.1 | 93.640 | 283 | 8 | 1 | 1 | 283 | 1 | 273 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417110 | sp|Q9LYL9|Y3623_ARATH | 46.909 | 275 | 143 | 3 | 1 | 274 | 1 | 273 | 7.05e-82 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417110 | G7J2Y2 | 93.640 | 283 | 8 | 1 | 1 | 283 | 1 | 273 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0417110 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417110 | MtrunA17_Chr3g0114411 | 93.640 | 283 | 8 | 1 | 1 | 283 | 1 | 273 | 0.0 | 545 |
| Msa0417110 | MtrunA17_Chr3g0125321 | 26.829 | 205 | 141 | 4 | 69 | 268 | 36 | 236 | 5.08e-19 | 84.3 |
| Msa0417110 | MtrunA17_Chr5g0447111 | 31.847 | 157 | 103 | 3 | 87 | 243 | 142 | 294 | 4.27e-15 | 74.3 |
| Msa0417110 | MtrunA17_Chr3g0103031 | 32.941 | 170 | 102 | 5 | 76 | 243 | 134 | 293 | 1.61e-14 | 72.8 |
| Msa0417110 | MtrunA17_Chr1g0159831 | 33.103 | 145 | 92 | 3 | 97 | 241 | 154 | 293 | 2.35e-11 | 63.2 |
| Msa0417110 | MtrunA17_Chr5g0447191 | 33.607 | 122 | 78 | 2 | 104 | 225 | 20 | 138 | 6.29e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417110 | AT3G56230.1 | 46.909 | 275 | 143 | 3 | 1 | 274 | 1 | 273 | 7.17e-83 | 251 |
| Msa0417110 | AT1G01640.1 | 45.596 | 193 | 99 | 4 | 87 | 278 | 1 | 188 | 9.16e-53 | 171 |
| Msa0417110 | AT1G01640.2 | 47.093 | 172 | 85 | 4 | 108 | 278 | 1 | 167 | 7.06e-47 | 155 |
| Msa0417110 | AT2G40450.1 | 39.444 | 180 | 104 | 3 | 95 | 269 | 9 | 188 | 2.88e-26 | 102 |
| Msa0417110 | AT5G48510.1 | 36.667 | 180 | 110 | 3 | 99 | 274 | 13 | 192 | 2.24e-25 | 100 |
| Msa0417110 | AT4G04090.1 | 31.765 | 170 | 115 | 1 | 105 | 273 | 20 | 189 | 8.53e-24 | 95.9 |
| Msa0417110 | AT2G05330.1 | 36.364 | 143 | 89 | 2 | 129 | 269 | 34 | 176 | 4.74e-21 | 89.4 |
| Msa0417110 | AT4G08455.1 | 28.774 | 212 | 135 | 6 | 69 | 268 | 41 | 248 | 3.71e-20 | 87.8 |
| Msa0417110 | AT2G05330.2 | 36.364 | 132 | 82 | 2 | 140 | 269 | 1 | 132 | 1.98e-17 | 78.2 |
| Msa0417110 | AT3G29740.1 | 44.872 | 78 | 40 | 1 | 96 | 170 | 10 | 87 | 5.36e-13 | 63.9 |
| Msa0417110 | AT1G21780.2 | 33.103 | 145 | 92 | 3 | 97 | 241 | 148 | 287 | 9.48e-13 | 67.8 |
| Msa0417110 | AT1G21780.1 | 33.103 | 145 | 92 | 3 | 97 | 241 | 148 | 287 | 9.48e-13 | 67.8 |
| Msa0417110 | AT1G55760.1 | 34.286 | 140 | 83 | 4 | 106 | 243 | 160 | 292 | 6.81e-11 | 62.4 |
Find 46 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAGGCCTTAATATTAA+TGG | 0.173072 | 3_2:+64207938 | None:intergenic |
| TTATAGAGAAATTGATAATT+TGG | 0.186682 | 3_2:+64206625 | None:intergenic |
| TGCACAAATGCTTCAAATTT+AGG | 0.193574 | 3_2:+64206701 | None:intergenic |
| ATTCTAGTTCTTCATGGTTT+AGG | 0.258680 | 3_2:+64206978 | None:intergenic |
| CAACTATGCCATTAATATTA+AGG | 0.308128 | 3_2:-64207946 | Msa0417110:CDS |
| TAGTGTCTCAAATGCATTAG+AGG | 0.315759 | 3_2:+64206811 | None:intergenic |
| CTCGAATTTCGCCGCGAAAT+AGG | 0.318434 | 3_2:+64207809 | None:intergenic |
| AGGATGTCTCCTTCAAATCT+TGG | 0.335688 | 3_2:+64206765 | None:intergenic |
| ACCTGCTCATAAATCCGTTT+TGG | 0.337217 | 3_2:-64207521 | Msa0417110:intron |
| GGAGAGATTCTAGTTCTTCA+TGG | 0.351873 | 3_2:+64206972 | None:intergenic |
| TTACAGTGGGACATTGCCTT+TGG | 0.363490 | 3_2:-64206939 | Msa0417110:CDS |
| GCCCCGCATATTGTATTCCT+TGG | 0.404140 | 3_2:+64207920 | None:intergenic |
| AGTTCTTCATGGTTTAGGTC+AGG | 0.422615 | 3_2:+64206983 | None:intergenic |
| GGGCATGTTATGAAGGAGTT+AGG | 0.432141 | 3_2:-64207901 | Msa0417110:CDS |
| TTGATTAGTCCAGGCAATCT+TGG | 0.436642 | 3_2:-64207553 | Msa0417110:CDS |
| TGTGTGAATTTGTTCTTTGA+AGG | 0.437509 | 3_2:+64207582 | None:intergenic |
| GTTTCAAGAGCATTTGTGAA+TGG | 0.440008 | 3_2:-64206650 | Msa0417110:CDS |
| TTGTTCAAACCAAGATTTGA+AGG | 0.441270 | 3_2:-64206774 | Msa0417110:CDS |
| TCCTGGAGTTTCTTTACAGT+GGG | 0.444038 | 3_2:-64206952 | Msa0417110:CDS |
| ACGGATTTATGAGCAGGTAT+AGG | 0.452650 | 3_2:+64207526 | None:intergenic |
| AAAACAATCACTACTCCAAA+TGG | 0.473612 | 3_2:-64207836 | Msa0417110:CDS |
| CCGCATATTGTATTCCTTGG+AGG | 0.481513 | 3_2:+64207923 | None:intergenic |
| ATAGGTGGACCAAGATTGCC+TGG | 0.498249 | 3_2:+64207544 | None:intergenic |
| CTCCAAGGAATACAATATGC+GGG | 0.502759 | 3_2:-64207922 | Msa0417110:CDS |
| AATTTGAAGCATTTGTGCAT+AGG | 0.515796 | 3_2:-64206697 | Msa0417110:CDS |
| TTCGCGGCGAAATTCGAGTA+AGG | 0.516513 | 3_2:-64207804 | Msa0417110:CDS |
| ATAGTTATTGTGTTACAAGT+TGG | 0.522203 | 3_2:+64207007 | None:intergenic |
| CTCCTGGAGTTTCTTTACAG+TGG | 0.523154 | 3_2:-64206953 | Msa0417110:CDS |
| ACCAAAACGGATTTATGAGC+AGG | 0.528361 | 3_2:+64207520 | None:intergenic |
| TCACAGTATTTCAGCAAATG+TGG | 0.541324 | 3_2:+64206860 | None:intergenic |
| CGCGAAATAGGAGAACCATT+TGG | 0.543566 | 3_2:+64207821 | None:intergenic |
| CAAATGGTTCTCCTATTTCG+CGG | 0.549333 | 3_2:-64207820 | Msa0417110:CDS |
| TGAAGAACTAGAATCTCTCC+TGG | 0.552448 | 3_2:-64206969 | Msa0417110:CDS |
| AAAACAAGAACTCACCAAAA+CGG | 0.553720 | 3_2:+64207507 | None:intergenic |
| ATATGCGGGGCATGTTATGA+AGG | 0.554738 | 3_2:-64207908 | Msa0417110:CDS |
| ACAGATATATTGATTAGTCC+AGG | 0.558976 | 3_2:-64207562 | Msa0417110:CDS |
| CATTAATATTAAGGCCTCCA+AGG | 0.571973 | 3_2:-64207937 | Msa0417110:CDS |
| GAAGATTTGGCTTATCTCAG+AGG | 0.573153 | 3_2:-64207616 | Msa0417110:CDS |
| CTTATCAGCTGCTTGTGACA+AGG | 0.589102 | 3_2:+64206892 | None:intergenic |
| CCTCCAAGGAATACAATATG+CGG | 0.594433 | 3_2:-64207923 | Msa0417110:CDS |
| TCCCACTGTAAAGAAACTCC+AGG | 0.600648 | 3_2:+64206951 | None:intergenic |
| GATTTATGAGCAGGTATAGG+TGG | 0.605249 | 3_2:+64207529 | None:intergenic |
| AGCATAATCAACATGATGAA+CGG | 0.614339 | 3_2:-64207878 | Msa0417110:CDS |
| CACTTGATGATTGTATAAGA+TGG | 0.631009 | 3_2:-64207675 | Msa0417110:CDS |
| TCCAAGGAATACAATATGCG+GGG | 0.662906 | 3_2:-64207921 | Msa0417110:CDS |
| ACTAATTGCACAGTTAAATG+CGG | 0.678765 | 3_2:+64206671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTAAAGATTAAAGAA+TGG | + | chr3_2:64207132-64207151 | None:intergenic | 10.0% |
| !!! | AGATAAAATAAAGTATTTTT+TGG | - | chr3_2:64207221-64207240 | Msa0417110:intron | 10.0% |
| !!! | ATTTTTAACTAAGAAATTAA+AGG | + | chr3_2:64207848-64207867 | None:intergenic | 10.0% |
| !!! | AAATTTTAAAGATTAAAGAA+TGG | + | chr3_2:64207132-64207151 | None:intergenic | 10.0% |
| !!! | AGATAAAATAAAGTATTTTT+TGG | - | chr3_2:64207221-64207240 | Msa0417110:intron | 10.0% |
| !!! | ATTTTTAACTAAGAAATTAA+AGG | + | chr3_2:64207848-64207867 | None:intergenic | 10.0% |
| !!! | TAATTCTTTTCATAATTCTA+TGG | - | chr3_2:64206816-64206835 | Msa0417110:CDS | 15.0% |
| !! | GTTAATGAAAATTATTTAGT+GGG | + | chr3_2:64207110-64207129 | None:intergenic | 15.0% |
| !!! | TAAAATAAAGTATTTTTTGG+CGG | - | chr3_2:64207224-64207243 | Msa0417110:intron | 15.0% |
| !!! | TATTTTTTTGTTTACAAAGA+GGG | + | chr3_2:64207300-64207319 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGTTTACAAAG+AGG | + | chr3_2:64207301-64207320 | None:intergenic | 15.0% |
| !! | TATTTATGTTATTGTAATGT+AGG | - | chr3_2:64207504-64207523 | Msa0417110:intron | 15.0% |
| !!! | TTATAGAGAAATTGATAATT+TGG | + | chr3_2:64207968-64207987 | None:intergenic | 15.0% |
| !!! | TAATTCTTTTCATAATTCTA+TGG | - | chr3_2:64206816-64206835 | Msa0417110:CDS | 15.0% |
| !! | GTTAATGAAAATTATTTAGT+GGG | + | chr3_2:64207110-64207129 | None:intergenic | 15.0% |
| !!! | TAAAATAAAGTATTTTTTGG+CGG | - | chr3_2:64207224-64207243 | Msa0417110:intron | 15.0% |
| !!! | TATTTTTTTGTTTACAAAGA+GGG | + | chr3_2:64207300-64207319 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTGTTTACAAAG+AGG | + | chr3_2:64207301-64207320 | None:intergenic | 15.0% |
| !! | TATTTATGTTATTGTAATGT+AGG | - | chr3_2:64207504-64207523 | Msa0417110:intron | 15.0% |
| !!! | TTATAGAGAAATTGATAATT+TGG | + | chr3_2:64207968-64207987 | None:intergenic | 15.0% |
| !!! | CTTCTTTTTGTTGATTAAAT+TGG | + | chr3_2:64206958-64206977 | None:intergenic | 20.0% |
| !! | TAATCAACAAAAAGAAGATT+TGG | - | chr3_2:64206961-64206980 | Msa0417110:CDS | 20.0% |
| !! | GGTTAATGAAAATTATTTAG+TGG | + | chr3_2:64207111-64207130 | None:intergenic | 20.0% |
| !! | AAAAGCTTAAAAAAATAAGC+TGG | - | chr3_2:64207377-64207396 | Msa0417110:intron | 20.0% |
| !! | AGTTAAAAATATTGAGCATA+TGG | - | chr3_2:64207858-64207877 | Msa0417110:CDS | 20.0% |
| !!! | CTTCTTTTTGTTGATTAAAT+TGG | + | chr3_2:64206958-64206977 | None:intergenic | 20.0% |
| !! | TAATCAACAAAAAGAAGATT+TGG | - | chr3_2:64206961-64206980 | Msa0417110:CDS | 20.0% |
| !! | GGTTAATGAAAATTATTTAG+TGG | + | chr3_2:64207111-64207130 | None:intergenic | 20.0% |
| !! | AAAAGCTTAAAAAAATAAGC+TGG | - | chr3_2:64207377-64207396 | Msa0417110:intron | 20.0% |
| !! | AGTTAAAAATATTGAGCATA+TGG | - | chr3_2:64207858-64207877 | Msa0417110:CDS | 20.0% |
| ! | CAACTATGCCATTAATATTA+AGG | - | chr3_2:64206644-64206663 | Msa0417110:CDS | 25.0% |
| !!! | TCGGTGTAGTTTTTTTTTTT+GGG | - | chr3_2:64207267-64207286 | Msa0417110:intron | 25.0% |
| ! | ATAGTTATTGTGTTACAAGT+TGG | + | chr3_2:64207586-64207605 | None:intergenic | 25.0% |
| !! | TGTTTTTCCAATTTTTCCAA+AGG | + | chr3_2:64207670-64207689 | None:intergenic | 25.0% |
| ! | CAACTATGCCATTAATATTA+AGG | - | chr3_2:64206644-64206663 | Msa0417110:CDS | 25.0% |
| !!! | TCGGTGTAGTTTTTTTTTTT+GGG | - | chr3_2:64207267-64207286 | Msa0417110:intron | 25.0% |
| ! | ATAGTTATTGTGTTACAAGT+TGG | + | chr3_2:64207586-64207605 | None:intergenic | 25.0% |
| !! | TGTTTTTCCAATTTTTCCAA+AGG | + | chr3_2:64207670-64207689 | None:intergenic | 25.0% |
| AGCATAATCAACATGATGAA+CGG | - | chr3_2:64206712-64206731 | Msa0417110:CDS | 30.0% | |
| AAAACAATCACTACTCCAAA+TGG | - | chr3_2:64206754-64206773 | Msa0417110:CDS | 30.0% | |
| ! | CACTTGATGATTGTATAAGA+TGG | - | chr3_2:64206915-64206934 | Msa0417110:CDS | 30.0% |
| ! | TGTGTGAATTTGTTCTTTGA+AGG | + | chr3_2:64207011-64207030 | None:intergenic | 30.0% |
| ! | ACAGATATATTGATTAGTCC+AGG | - | chr3_2:64207028-64207047 | Msa0417110:CDS | 30.0% |
| AAAACAAGAACTCACCAAAA+CGG | + | chr3_2:64207086-64207105 | None:intergenic | 30.0% | |
| !!! | CTCGGTGTAGTTTTTTTTTT+TGG | - | chr3_2:64207266-64207285 | Msa0417110:intron | 30.0% |
| !! | ATTCTAGTTCTTCATGGTTT+AGG | + | chr3_2:64207615-64207634 | None:intergenic | 30.0% |
| TTGTTCAAACCAAGATTTGA+AGG | - | chr3_2:64207816-64207835 | Msa0417110:CDS | 30.0% | |
| TGCACAAATGCTTCAAATTT+AGG | + | chr3_2:64207892-64207911 | None:intergenic | 30.0% | |
| ! | AATTTGAAGCATTTGTGCAT+AGG | - | chr3_2:64207893-64207912 | Msa0417110:CDS | 30.0% |
| ACTAATTGCACAGTTAAATG+CGG | + | chr3_2:64207922-64207941 | None:intergenic | 30.0% | |
| AGCATAATCAACATGATGAA+CGG | - | chr3_2:64206712-64206731 | Msa0417110:CDS | 30.0% | |
| AAAACAATCACTACTCCAAA+TGG | - | chr3_2:64206754-64206773 | Msa0417110:CDS | 30.0% | |
| ! | CACTTGATGATTGTATAAGA+TGG | - | chr3_2:64206915-64206934 | Msa0417110:CDS | 30.0% |
| ! | TGTGTGAATTTGTTCTTTGA+AGG | + | chr3_2:64207011-64207030 | None:intergenic | 30.0% |
| ! | ACAGATATATTGATTAGTCC+AGG | - | chr3_2:64207028-64207047 | Msa0417110:CDS | 30.0% |
| AAAACAAGAACTCACCAAAA+CGG | + | chr3_2:64207086-64207105 | None:intergenic | 30.0% | |
| !!! | CTCGGTGTAGTTTTTTTTTT+TGG | - | chr3_2:64207266-64207285 | Msa0417110:intron | 30.0% |
| !! | ATTCTAGTTCTTCATGGTTT+AGG | + | chr3_2:64207615-64207634 | None:intergenic | 30.0% |
| TTGTTCAAACCAAGATTTGA+AGG | - | chr3_2:64207816-64207835 | Msa0417110:CDS | 30.0% | |
| TGCACAAATGCTTCAAATTT+AGG | + | chr3_2:64207892-64207911 | None:intergenic | 30.0% | |
| ! | AATTTGAAGCATTTGTGCAT+AGG | - | chr3_2:64207893-64207912 | Msa0417110:CDS | 30.0% |
| ACTAATTGCACAGTTAAATG+CGG | + | chr3_2:64207922-64207941 | None:intergenic | 30.0% | |
| CTTGGAGGCCTTAATATTAA+TGG | + | chr3_2:64206655-64206674 | None:intergenic | 35.0% | |
| CATTAATATTAAGGCCTCCA+AGG | - | chr3_2:64206653-64206672 | Msa0417110:CDS | 35.0% | |
| ! | GACATTGCCTTTGGAAAAAT+TGG | - | chr3_2:64207660-64207679 | Msa0417110:CDS | 35.0% |
| TCACAGTATTTCAGCAAATG+TGG | + | chr3_2:64207733-64207752 | None:intergenic | 35.0% | |
| TAGTGTCTCAAATGCATTAG+AGG | + | chr3_2:64207782-64207801 | None:intergenic | 35.0% | |
| !! | GTTTCAAGAGCATTTGTGAA+TGG | - | chr3_2:64207940-64207959 | Msa0417110:CDS | 35.0% |
| CTTGGAGGCCTTAATATTAA+TGG | + | chr3_2:64206655-64206674 | None:intergenic | 35.0% | |
| CATTAATATTAAGGCCTCCA+AGG | - | chr3_2:64206653-64206672 | Msa0417110:CDS | 35.0% | |
| ! | GACATTGCCTTTGGAAAAAT+TGG | - | chr3_2:64207660-64207679 | Msa0417110:CDS | 35.0% |
| TCACAGTATTTCAGCAAATG+TGG | + | chr3_2:64207733-64207752 | None:intergenic | 35.0% | |
| TAGTGTCTCAAATGCATTAG+AGG | + | chr3_2:64207782-64207801 | None:intergenic | 35.0% | |
| !! | GTTTCAAGAGCATTTGTGAA+TGG | - | chr3_2:64207940-64207959 | Msa0417110:CDS | 35.0% |
| CCTCCAAGGAATACAATATG+CGG | - | chr3_2:64206667-64206686 | Msa0417110:CDS | 40.0% | |
| CTCCAAGGAATACAATATGC+GGG | - | chr3_2:64206668-64206687 | Msa0417110:CDS | 40.0% | |
| TCCAAGGAATACAATATGCG+GGG | - | chr3_2:64206669-64206688 | Msa0417110:CDS | 40.0% | |
| CAAATGGTTCTCCTATTTCG+CGG | - | chr3_2:64206770-64206789 | Msa0417110:CDS | 40.0% | |
| ! | GAAGATTTGGCTTATCTCAG+AGG | - | chr3_2:64206974-64206993 | Msa0417110:CDS | 40.0% |
| ! | TTGATTAGTCCAGGCAATCT+TGG | - | chr3_2:64207037-64207056 | Msa0417110:CDS | 40.0% |
| GATTTATGAGCAGGTATAGG+TGG | + | chr3_2:64207064-64207083 | None:intergenic | 40.0% | |
| ACGGATTTATGAGCAGGTAT+AGG | + | chr3_2:64207067-64207086 | None:intergenic | 40.0% | |
| ! | ACCTGCTCATAAATCCGTTT+TGG | - | chr3_2:64207069-64207088 | Msa0417110:intron | 40.0% |
| ! | ACCAAAACGGATTTATGAGC+AGG | + | chr3_2:64207073-64207092 | None:intergenic | 40.0% |
| TTCTGTCTCACGATTGATCT+CGG | - | chr3_2:64207248-64207267 | Msa0417110:intron | 40.0% | |
| AGTTCTTCATGGTTTAGGTC+AGG | + | chr3_2:64207610-64207629 | None:intergenic | 40.0% | |
| !! | GGAGAGATTCTAGTTCTTCA+TGG | + | chr3_2:64207621-64207640 | None:intergenic | 40.0% |
| TGAAGAACTAGAATCTCTCC+TGG | - | chr3_2:64207621-64207640 | Msa0417110:CDS | 40.0% | |
| TCCTGGAGTTTCTTTACAGT+GGG | - | chr3_2:64207638-64207657 | Msa0417110:CDS | 40.0% | |
| AGGATGTCTCCTTCAAATCT+TGG | + | chr3_2:64207828-64207847 | None:intergenic | 40.0% | |
| CCTCCAAGGAATACAATATG+CGG | - | chr3_2:64206667-64206686 | Msa0417110:CDS | 40.0% | |
| CTCCAAGGAATACAATATGC+GGG | - | chr3_2:64206668-64206687 | Msa0417110:CDS | 40.0% | |
| TCCAAGGAATACAATATGCG+GGG | - | chr3_2:64206669-64206688 | Msa0417110:CDS | 40.0% | |
| CAAATGGTTCTCCTATTTCG+CGG | - | chr3_2:64206770-64206789 | Msa0417110:CDS | 40.0% | |
| ! | GAAGATTTGGCTTATCTCAG+AGG | - | chr3_2:64206974-64206993 | Msa0417110:CDS | 40.0% |
| ! | TTGATTAGTCCAGGCAATCT+TGG | - | chr3_2:64207037-64207056 | Msa0417110:CDS | 40.0% |
| GATTTATGAGCAGGTATAGG+TGG | + | chr3_2:64207064-64207083 | None:intergenic | 40.0% | |
| ACGGATTTATGAGCAGGTAT+AGG | + | chr3_2:64207067-64207086 | None:intergenic | 40.0% | |
| ! | ACCTGCTCATAAATCCGTTT+TGG | - | chr3_2:64207069-64207088 | Msa0417110:intron | 40.0% |
| ! | ACCAAAACGGATTTATGAGC+AGG | + | chr3_2:64207073-64207092 | None:intergenic | 40.0% |
| TTCTGTCTCACGATTGATCT+CGG | - | chr3_2:64207248-64207267 | Msa0417110:intron | 40.0% | |
| AGTTCTTCATGGTTTAGGTC+AGG | + | chr3_2:64207610-64207629 | None:intergenic | 40.0% | |
| !! | GGAGAGATTCTAGTTCTTCA+TGG | + | chr3_2:64207621-64207640 | None:intergenic | 40.0% |
| TGAAGAACTAGAATCTCTCC+TGG | - | chr3_2:64207621-64207640 | Msa0417110:CDS | 40.0% | |
| TCCTGGAGTTTCTTTACAGT+GGG | - | chr3_2:64207638-64207657 | Msa0417110:CDS | 40.0% | |
| AGGATGTCTCCTTCAAATCT+TGG | + | chr3_2:64207828-64207847 | None:intergenic | 40.0% | |
| CCGCATATTGTATTCCTTGG+AGG | + | chr3_2:64206670-64206689 | None:intergenic | 45.0% | |
| ATATGCGGGGCATGTTATGA+AGG | - | chr3_2:64206682-64206701 | Msa0417110:CDS | 45.0% | |
| GGGCATGTTATGAAGGAGTT+AGG | - | chr3_2:64206689-64206708 | Msa0417110:CDS | 45.0% | |
| CGCGAAATAGGAGAACCATT+TGG | + | chr3_2:64206772-64206791 | None:intergenic | 45.0% | |
| CAATCATCAAGTGTCTGCAG+AGG | + | chr3_2:64206908-64206927 | None:intergenic | 45.0% | |
| CTCCTGGAGTTTCTTTACAG+TGG | - | chr3_2:64207637-64207656 | Msa0417110:CDS | 45.0% | |
| TCCCACTGTAAAGAAACTCC+AGG | + | chr3_2:64207642-64207661 | None:intergenic | 45.0% | |
| TTACAGTGGGACATTGCCTT+TGG | - | chr3_2:64207651-64207670 | Msa0417110:CDS | 45.0% | |
| CTTATCAGCTGCTTGTGACA+AGG | + | chr3_2:64207701-64207720 | None:intergenic | 45.0% | |
| CCGCATATTGTATTCCTTGG+AGG | + | chr3_2:64206670-64206689 | None:intergenic | 45.0% | |
| ATATGCGGGGCATGTTATGA+AGG | - | chr3_2:64206682-64206701 | Msa0417110:CDS | 45.0% | |
| GGGCATGTTATGAAGGAGTT+AGG | - | chr3_2:64206689-64206708 | Msa0417110:CDS | 45.0% | |
| CGCGAAATAGGAGAACCATT+TGG | + | chr3_2:64206772-64206791 | None:intergenic | 45.0% | |
| CAATCATCAAGTGTCTGCAG+AGG | + | chr3_2:64206908-64206927 | None:intergenic | 45.0% | |
| CTCCTGGAGTTTCTTTACAG+TGG | - | chr3_2:64207637-64207656 | Msa0417110:CDS | 45.0% | |
| TCCCACTGTAAAGAAACTCC+AGG | + | chr3_2:64207642-64207661 | None:intergenic | 45.0% | |
| TTACAGTGGGACATTGCCTT+TGG | - | chr3_2:64207651-64207670 | Msa0417110:CDS | 45.0% | |
| CTTATCAGCTGCTTGTGACA+AGG | + | chr3_2:64207701-64207720 | None:intergenic | 45.0% | |
| GCCCCGCATATTGTATTCCT+TGG | + | chr3_2:64206673-64206692 | None:intergenic | 50.0% | |
| CTCGAATTTCGCCGCGAAAT+AGG | + | chr3_2:64206784-64206803 | None:intergenic | 50.0% | |
| TTCGCGGCGAAATTCGAGTA+AGG | - | chr3_2:64206786-64206805 | Msa0417110:CDS | 50.0% | |
| ATAGGTGGACCAAGATTGCC+TGG | + | chr3_2:64207049-64207068 | None:intergenic | 50.0% | |
| GCCCCGCATATTGTATTCCT+TGG | + | chr3_2:64206673-64206692 | None:intergenic | 50.0% | |
| CTCGAATTTCGCCGCGAAAT+AGG | + | chr3_2:64206784-64206803 | None:intergenic | 50.0% | |
| TTCGCGGCGAAATTCGAGTA+AGG | - | chr3_2:64206786-64206805 | Msa0417110:CDS | 50.0% | |
| ATAGGTGGACCAAGATTGCC+TGG | + | chr3_2:64207049-64207068 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 64206625 | 64207987 | 64206625 | ID=Msa0417110;Name=Msa0417110 |
| chr3_2 | mRNA | 64206625 | 64207987 | 64206625 | ID=Msa0417110-mRNA-1;Parent=Msa0417110;Name=Msa0417110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|283 |
| chr3_2 | exon | 64207775 | 64207987 | 64207775 | ID=Msa0417110-mRNA-1:exon:14194;Parent=Msa0417110-mRNA-1 |
| chr3_2 | exon | 64207522 | 64207698 | 64207522 | ID=Msa0417110-mRNA-1:exon:14193;Parent=Msa0417110-mRNA-1 |
| chr3_2 | exon | 64206625 | 64207086 | 64206625 | ID=Msa0417110-mRNA-1:exon:14192;Parent=Msa0417110-mRNA-1 |
| chr3_2 | CDS | 64207775 | 64207987 | 64207775 | ID=Msa0417110-mRNA-1:cds;Parent=Msa0417110-mRNA-1 |
| chr3_2 | CDS | 64207522 | 64207698 | 64207522 | ID=Msa0417110-mRNA-1:cds;Parent=Msa0417110-mRNA-1 |
| chr3_2 | CDS | 64206625 | 64207086 | 64206625 | ID=Msa0417110-mRNA-1:cds;Parent=Msa0417110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
